Citrus Sinensis ID: 000846
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1255 | 2.2.26 [Sep-21-2011] | |||||||
| Q6YUU5 | 1245 | Putative multidrug resist | yes | no | 0.963 | 0.971 | 0.533 | 0.0 | |
| Q9LHD1 | 1240 | ABC transporter B family | yes | no | 0.964 | 0.976 | 0.533 | 0.0 | |
| Q9LSJ6 | 1240 | ABC transporter B family | no | no | 0.961 | 0.973 | 0.519 | 0.0 | |
| Q9LSJ5 | 1225 | ABC transporter B family | no | no | 0.958 | 0.982 | 0.513 | 0.0 | |
| Q9LSJ2 | 1229 | ABC transporter B family | no | no | 0.966 | 0.986 | 0.511 | 0.0 | |
| Q9LSJ8 | 1228 | ABC transporter B family | no | no | 0.964 | 0.986 | 0.508 | 0.0 | |
| Q9LHK4 | 1241 | Putative ABC transporter | no | no | 0.948 | 0.958 | 0.460 | 0.0 | |
| Q9LJX0 | 1252 | ABC transporter B family | no | no | 0.965 | 0.968 | 0.448 | 0.0 | |
| Q9ZR72 | 1286 | ABC transporter B family | no | no | 0.968 | 0.945 | 0.437 | 0.0 | |
| Q8LPK2 | 1273 | ABC transporter B family | no | no | 0.956 | 0.943 | 0.423 | 0.0 |
| >sp|Q6YUU5|MDR_ORYSJ Putative multidrug resistance protein OS=Oryza sativa subsp. japonica GN=Os02g0190300 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 1321 bits (3418), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 668/1251 (53%), Positives = 910/1251 (72%), Gaps = 42/1251 (3%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLR 66
+F +AD D LM+ G +G++GDG+ P+M+ + S + ND G+ + D V +++ +
Sbjct: 23 VFMHADAADVALMVLGLLGAMGDGISTPVMLLITSRIFNDLGSGA------DIVKEFSSK 76
Query: 67 -------LLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGS 119
L+++A + AF+EG CW RTAERQ SRMR YL++VLRQ+V +FD ++
Sbjct: 77 VNVNARNLVFLAAASWVMAFLEGYCWARTAERQASRMRARYLRAVLRQDVEYFDLKK--- 133
Query: 120 STTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMF 179
+T +V++++SNDS +Q + EK+ N + + F F L WRL+L ALP ++
Sbjct: 134 GSTAEVITSVSNDSLVVQDVLSEKVPNFVMNAAMFAGSYAVGFALLWRLTLVALPSVVLL 193
Query: 180 IVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTM 239
I+PG ++G++++G+ ++ E Y G IAEQAVSS RTVYS+VAE T+ +FS AL+++
Sbjct: 194 IIPGFMYGRILVGLARRIREQYTRPGAIAEQAVSSARTVYSFVAERTTMAQFSAALEESA 253
Query: 240 ELGIKQGFIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVL 299
LG+KQG KG+ +GS G+ + WAF W GS LV G +GG++F +I++GGL++
Sbjct: 254 RLGLKQGLAKGIAVGSNGITFAIWAFNVWYGSRLVMYHGYQGGTVFAVSAAIVVGGLALG 313
Query: 300 GALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPD 359
L N+ +EA AA RI E++ R P ID++ G+ L+ V GE+EFR+V FCYPSRP+
Sbjct: 314 SGLSNVKYFSEASSAAERILEVIRRVPKIDSESDTGEELANVTGEVEFRNVEFCYPSRPE 373
Query: 360 TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL 419
+ + NLRVPAG++V LVGGSGSGKST IALL+RFYDP GEV++DG IRRL LKWL
Sbjct: 374 SPIFVSFNLRVPAGRTVALVGGSGSGKSTVIALLERFYDPSAGEVMVDGVDIRRLRLKWL 433
Query: 420 RSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQ 479
R+QMGLV+QEP LFATSI ENILFGK+ A+ ++V++AAKAANAH+FI++LP GY+TQVG+
Sbjct: 434 RAQMGLVSQEPALFATSIRENILFGKEEATAEEVVAAAKAANAHNFISQLPQGYDTQVGE 493
Query: 480 LGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIA 539
G QMSGGQKQRIAIARA+++ PKILLLDEATSALD +SER+VQEA+D S GRTT++IA
Sbjct: 494 RGVQMSGGQKQRIAIARAILKSPKILLLDEATSALDTESERVVQEALDLASMGRTTIVIA 553
Query: 540 HRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTFND 599
HRLSTIR A++I V+++G+V E G H+EL+ + G Y +V LQQ N
Sbjct: 554 HRLSTIRNADIIAVMQSGEVKELGPHDELIA-NDNGLYSSLVRLQQTRDSN--------- 603
Query: 600 FSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDPDDDSLGD 659
++D I + T A S S + A + S A S+G D DD D
Sbjct: 604 ---EIDEIGVTGSTSAVGQSSSHSMSRRFSAASRSSSARSLG---------DARDD---D 648
Query: 660 RIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKS 719
++ PS RLL +N PEW AL+G +++ G +QP AY +GS+IS+YF TD +
Sbjct: 649 NTEKPKLPVPSFRRLLMLNAPEWKQALMGSFSAVVFGGIQPAYAYAMGSMISVYFLTDHA 708
Query: 720 EIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQ 779
EIK K+RT +L F+G+AVL+F+ ++ QHY+F MGE LTKR+RE++L K++TFEIGWFD+
Sbjct: 709 EIKDKTRTYALIFVGLAVLSFLINIGQHYNFGAMGEYLTKRIREQMLAKILTFEIGWFDR 768
Query: 780 EDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQP 839
++N+S AIC++LA +ANVVRSLVGDRM+L++Q I + + +GLV++WRL LVMIAVQP
Sbjct: 769 DENSSGAICSQLAKDANVVRSLVGDRMALVIQTISAVLIACTMGLVIAWRLALVMIAVQP 828
Query: 840 LVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRG 899
L+I +Y+R VL+KSM+ K+ AQ E S+LA+EAV N RTITAFSSQ+RIL LF+++ G
Sbjct: 829 LIIVCFYARRVLLKSMSKKSIHAQAESSKLAAEAVSNLRTITAFSSQERILRLFEQSQDG 888
Query: 900 PKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAY 959
P++ES++ SW++G+GL +S T + AL +WYGGRL+ + I+ + LFQ F+IL+ T
Sbjct: 889 PRKESIRQSWFAGLGLGTSMSLMTCTWALDFWYGGRLMAEHHISAKELFQTFMILVSTGR 948
Query: 960 VIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYP 1019
VIA+AGSMT+D++KG++AV SVFA+LDR +EIDPD+PQG +++G ++++ V FAYP
Sbjct: 949 VIADAGSMTTDLAKGADAVASVFAVLDRETEIDPDNPQGYK-PEKLKGEVDIRGVDFAYP 1007
Query: 1020 TRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN 1079
+RPD +I KG +L I+ GK+ ALVGQSG GKSTIIGL+ERFYDP++GSV +D +DI+ YN
Sbjct: 1008 SRPDVIIFKGFTLSIQPGKSTALVGQSGSGKSTIIGLIERFYDPIRGSVKIDGRDIKAYN 1067
Query: 1080 LKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDT 1139
L+ LR HI LVSQEPTLFAGTIRENI YG A E+EI+ AA ANAH+FIS +KDGYDT
Sbjct: 1068 LRALRRHIGLVSQEPTLFAGTIRENIVYGTETASEAEIEDAARSANAHDFISNLKDGYDT 1127
Query: 1140 YCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTC 1199
+CGERGVQLSGGQKQRIA+ARAILKNP+ILLLDEATSALDS SE +VQEAL+++M+GRT
Sbjct: 1128 WCGERGVQLSGGQKQRIAIARAILKNPAILLLDEATSALDSQSEKVVQEALDRVMIGRTS 1187
Query: 1200 VVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGG 1250
VVVAHRLSTIQ D I V++ G VVE+G+H L+A G Y+SL+ Q G
Sbjct: 1188 VVVAHRLSTIQNCDLITVLEKGTVVEKGTHASLMAKGLSGTYFSLVNLQQG 1238
|
Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9LHD1|AB15B_ARATH ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1304 bits (3375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 667/1251 (53%), Positives = 908/1251 (72%), Gaps = 40/1251 (3%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDT----VDK 62
+F +ADG D LLM G IG++GDG PL++ + S ++N+ G SS + DT + K
Sbjct: 23 IFMHADGVDWLLMGLGLIGAVGDGFTTPLVLLITSKLMNNIGG---SSFNTDTFMQSISK 79
Query: 63 YTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTT 122
++ LLYVA G + F+EG CWTRT ERQT+RMR +YL++VLRQ+VG+FD ++T
Sbjct: 80 NSVALLYVACGSWVVCFLEGYCWTRTGERQTARMREKYLRAVLRQDVGYFDLH---VTST 136
Query: 123 FQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVP 182
V++++S+DS IQ + EK+ N L STF + FIL WRL++ LP ++ ++P
Sbjct: 137 SDVITSVSSDSFVIQDVLSEKLPNFLMSASTFVGSYIVGFILLWRLAIVGLPFIVLLVIP 196
Query: 183 GLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELG 242
GL++G+ ++ + K+ E Y AG +AEQA+SS+RTVY++ E +T+ +FS ALQ +++LG
Sbjct: 197 GLMYGRALISISRKIREEYNEAGFVAEQAISSVRTVYAFSGERKTISKFSTALQGSVKLG 256
Query: 243 IKQGFIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGAL 302
IKQG KG+ +GS G+ + W F +W GS +V G +GG++F +I +GG+S+ G L
Sbjct: 257 IKQGLAKGITIGSNGITFAMWGFMSWYGSRMVMYHGAQGGTVFAVAAAIAIGGVSLGGGL 316
Query: 303 PNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLV 362
NL EA RI E+++R P ID+D+ G L +RGE+EF++V F YPSR +T +
Sbjct: 317 SNLKYFFEAASVGERIMEVINRVPKIDSDNPDGHKLEKIRGEVEFKNVKFVYPSRLETSI 376
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ 422
LRVP+GK+V LVGGSGSGKST I+LLQRFYDP+ GE+L+DG I +L +KWLRSQ
Sbjct: 377 FDDFCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPLAGEILIDGVSIDKLQVKWLRSQ 436
Query: 423 MGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGF 482
MGLV+QEP LFAT+I ENILFGK+ ASMDDV+ AAKA+NAH+FI++LP+GYETQVG+ G
Sbjct: 437 MGLVSQEPALFATTIKENILFGKEDASMDDVVEAAKASNAHNFISQLPNGYETQVGERGV 496
Query: 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRL 542
QMSGGQKQRIAIARA+I+ P ILLLDEATSALD++SER+VQEA++ S GRTT++IAHRL
Sbjct: 497 QMSGGQKQRIAIARAIIKSPTILLLDEATSALDSESERVVQEALENASIGRTTILIAHRL 556
Query: 543 STIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSH 602
STIR A++I V+K G +VE+GSH+ELM + G+Y +V LQQ+ ++ + S
Sbjct: 557 STIRNADVISVVKNGHIVETGSHDELMENID-GQYSTLVHLQQIEKQDINVSVKIGPISD 615
Query: 603 QMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDPDDDSLGDRID 662
PS SS ST L+ S A SV P TI+ +D+
Sbjct: 616 -------------PSKDIRNSSRVST--LSRSSSANSVTGP--STIKNLSEDN------- 651
Query: 663 QSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIK 722
PS RLL +N+PEW AL GCI++ GA+QP AY +GS++S+YF T EIK
Sbjct: 652 --KPQLPSFKRLLAMNLPEWKQALYGCISATLFGAIQPAYAYSLGSMVSVYFLTSHDEIK 709
Query: 723 SKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDN 782
K+R +L F+G+AVL+F+ ++ QHY+F+ MGE LTKR+RE++L K++TFE+GWFD+++N
Sbjct: 710 EKTRIYALSFVGLAVLSFLINISQHYNFAYMGEYLTKRIRERMLSKVLTFEVGWFDRDEN 769
Query: 783 TSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVI 842
+S AIC+RLA +ANVVRSLVGDRM+L+VQ + ++ +GLV++WRL LVMIAVQP++I
Sbjct: 770 SSGAICSRLAKDANVVRSLVGDRMALVVQTVSAVTIAFTMGLVIAWRLALVMIAVQPVII 829
Query: 843 GSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKE 902
+Y+R VL+KSM+ KA KAQ E S+LA+EAV N RTITAFSSQ+RI+ + ++ P+
Sbjct: 830 VCFYTRRVLLKSMSKKAIKAQDESSKLAAEAVSNVRTITAFSSQERIMKMLEKAQESPRR 889
Query: 903 ESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIA 962
ES++ SW++G GL SQ + + AL +WYGGRL+ IT + LF+ F+IL+ T VIA
Sbjct: 890 ESIRQSWFAGFGLAMSQSLTSCTWALDFWYGGRLIQDGYITAKALFETFMILVSTGRVIA 949
Query: 963 EAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRP 1022
+AGSMT+D++KGS+AV SVFA+LDR + IDP+ P G + +R + G++E +V F+YPTRP
Sbjct: 950 DAGSMTTDLAKGSDAVGSVFAVLDRYTSIDPEDPDGYETER-ITGQVEFLDVDFSYPTRP 1008
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ 1082
D +I K S+KIE GK+ A+VG SG GKSTIIGL+ERFYDPLKG V +D +DIR+Y+L+
Sbjct: 1009 DVIIFKNFSIKIEEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRS 1068
Query: 1083 LRSHIALVSQEPTLFAGTIRENIAYGKADAR--ESEIKKAAVLANAHEFISGMKDGYDTY 1140
LR HIALVSQEPTLFAGTIRENI YG + E+EI +AA ANAH+FI+ + +GYDTY
Sbjct: 1069 LRRHIALVSQEPTLFAGTIRENIIYGGVSDKIDEAEIIEAAKAANAHDFITSLTEGYDTY 1128
Query: 1141 CGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCV 1200
CG+RGVQLSGGQKQRIA+ARA+LKNPS+LLLDEATSALDS SE +VQ+ALE++M+GRT V
Sbjct: 1129 CGDRGVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSQSERVVQDALERVMVGRTSV 1188
Query: 1201 VVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGGS 1251
V+AHRLSTIQ D IAV+ G++VE+G+H+ L++ G Y+SL+ Q S
Sbjct: 1189 VIAHRLSTIQNCDAIAVLDKGKLVERGTHSSLLSKGPTGIYFSLVSLQTTS 1239
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ6|AB17B_ARATH ABC transporter B family member 17 OS=Arabidopsis thaliana GN=ABCB17 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1291 bits (3341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 645/1241 (51%), Positives = 895/1241 (72%), Gaps = 34/1241 (2%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLS-NDTVDKYTL 65
+F +ADG D +LM G IG++GDG P++VF+ + ++N+ G SS++ + T+ K +
Sbjct: 23 IFMHADGVDWILMALGLIGAVGDGFITPVVVFIFNTLLNNLGTSSSNNKTFMQTISKNVV 82
Query: 66 RLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQV 125
LLYVA G + F+EG CWTRT ERQ +RMR +YL++VLRQ+VG+FD ++T V
Sbjct: 83 ALLYVACGSWVICFLEGYCWTRTGERQAARMREKYLRAVLRQDVGYFDLH---VTSTSDV 139
Query: 126 VSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLL 185
+++IS+DS IQ + EK+ N L S F + SFIL WRL++ P ++ +VPGL+
Sbjct: 140 ITSISSDSLVIQDFLSEKLPNFLMNASAFVASYIVSFILMWRLTIVGFPFIILLLVPGLM 199
Query: 186 FGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQ 245
+G+ ++ + K+ E Y AG IAEQA+SS+RTVY++ +E++ + +FS AL+ +++LG++Q
Sbjct: 200 YGRALVSISRKIHEQYNEAGSIAEQAISSVRTVYAFGSENKMIGKFSTALRGSVKLGLRQ 259
Query: 246 GFIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNL 305
G KG+ +GS G+ + WAF W GS LV G KGG++FV I GG+S+ +L NL
Sbjct: 260 GLAKGITIGSNGVTHAIWAFLTWYGSRLVMNHGSKGGTVFVVISCITYGGVSLGQSLSNL 319
Query: 306 TAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQG 365
+EA VA RI E++ R P ID++ K G+ L ++GE+EF V F Y SRP+T +
Sbjct: 320 KYFSEAFVAWERILEVIKRVPDIDSNKKEGQILERMKGEVEFNHVKFTYLSRPETTIFDD 379
Query: 366 LNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGL 425
L L++PAGK+V LVGGSGSGKST I+LLQRFYDP+ GE+L+DG I +L + WLRSQMGL
Sbjct: 380 LCLKIPAGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGVSIDKLQVNWLRSQMGL 439
Query: 426 VNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMS 485
V+QEPVLFATSITENILFGK+ AS+D+V+ AAKA+NAH FI++ P GY+TQVG+ G QMS
Sbjct: 440 VSQEPVLFATSITENILFGKEDASLDEVVEAAKASNAHTFISQFPLGYKTQVGERGVQMS 499
Query: 486 GGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTI 545
GGQKQRIAIARA+I+ PKILLLDEATSALD++SER+VQE++D S GRTT++IAHRLSTI
Sbjct: 500 GGQKQRIAIARAIIKSPKILLLDEATSALDSESERVVQESLDNASIGRTTIVIAHRLSTI 559
Query: 546 RTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQMD 605
R A++I V+ G++VE+GSH EL+ R + G+Y +V LQQM EN+ SN N +
Sbjct: 560 RNADVICVIHNGQIVETGSHEELLKRID-GQYTSLVSLQQM--ENEESNVNINVSVTKDQ 616
Query: 606 AINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDPDDDSLGDRIDQSS 665
++L K S +S ST + S+ T S I P+D+
Sbjct: 617 VMSLSK----DFKYSQHNSIGSTSS--------SIVTNVSDLI---PNDN---------Q 652
Query: 666 YATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKS 725
PS RL+ +N PEW AL GC+++ G +QP++AY GS+IS++F T +IK K+
Sbjct: 653 PLVPSFTRLMVMNRPEWKHALYGCLSAALVGVLQPVSAYSAGSVISVFFLTSHDQIKEKT 712
Query: 726 RTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSA 785
R L F+G+A+ +F+ ++ QHY F+ MGE LTKR+RE++L K++TFE+ WFD +DN+S
Sbjct: 713 RIYVLLFVGLAIFSFLVNISQHYGFAYMGEYLTKRIREQMLSKILTFEVNWFDIDDNSSG 772
Query: 786 AICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSY 845
AIC+RLA +ANVVRS+VGDRMSLLVQ I + + I+GLV++WRL +VMI+VQPL++ +
Sbjct: 773 AICSRLAKDANVVRSMVGDRMSLLVQTISAVIIACIIGLVIAWRLAIVMISVQPLIVVCF 832
Query: 846 YSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESL 905
Y++ VL+KS++ KA KAQ E S+LA+EAV N RTITAFSSQ+RI+ L K+ GP+ ES+
Sbjct: 833 YTQRVLLKSLSEKASKAQDESSKLAAEAVSNIRTITAFSSQERIIKLLKKVQEGPRRESV 892
Query: 906 KHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAG 965
SW +GI L +S+ T ++AL +WYGGRL+ I + F+ FLI + T VIA+AG
Sbjct: 893 HRSWLAGIVLGTSRSLITCTSALNFWYGGRLIADGKIVSKAFFEIFLIFVTTGRVIADAG 952
Query: 966 SMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQM 1025
+MT+D+++G +AV SVFA+LDR + I+P +P G + +++G+I NV FAYPTRPD +
Sbjct: 953 TMTTDLARGLDAVGSVFAVLDRCTTIEPKNPDGY-VAEKIKGQITFLNVDFAYPTRPDVV 1011
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS 1085
I + S++I+ GK+ A+VG SG GKSTIIGL+ERFYDPLKG+V +D +DIR+Y+L+ LR
Sbjct: 1012 IFENFSIEIDEGKSTAIVGTSGSGKSTIIGLIERFYDPLKGTVKIDGRDIRSYHLRSLRK 1071
Query: 1086 HIALVSQEPTLFAGTIRENIAYGKADAR--ESEIKKAAVLANAHEFISGMKDGYDTYCGE 1143
+I+LVSQEP LFAGTIRENI YG + ESEI +AA ANAH+FI+ + +GYDT CG+
Sbjct: 1072 YISLVSQEPMLFAGTIRENIMYGGTSDKIDESEIIEAAKAANAHDFITSLSNGYDTNCGD 1131
Query: 1144 RGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVA 1203
+GVQLSGGQKQRIA+ARA+LKNPS+LLLDEATSALDS SE +VQ+ALE++M+GRT +++A
Sbjct: 1132 KGVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSKSERVVQDALERVMVGRTSIMIA 1191
Query: 1204 HRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSL 1244
HRLSTIQ D I V+ G++VE G+H+ L+ G Y+SL
Sbjct: 1192 HRLSTIQNCDMIVVLGKGKIVESGTHSSLLEKGPTGTYFSL 1232
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ5|AB18B_ARATH ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1281 bits (3314), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 642/1250 (51%), Positives = 877/1250 (70%), Gaps = 47/1250 (3%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPS-SSSLSNDTVDKYTL 65
+F +ADG D +LM G IG++GDG P++ F+ S ++N+ G S TV K +
Sbjct: 11 IFMHADGVDWMLMALGLIGAVGDGFITPIIFFICSKLLNNVGGSSFDDETFMQTVAKNAV 70
Query: 66 RLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQV 125
L+YVA + F+EG CWTRT ERQ ++MR +YLK+VLRQ+VG+FD ++T V
Sbjct: 71 ALVYVACASWVICFIEGYCWTRTGERQAAKMREKYLKAVLRQDVGYFDLH---VTSTSDV 127
Query: 126 VSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLL 185
++++S+DS IQ + EK+ N L S F + F+L WRL++ P ++ ++PGL+
Sbjct: 128 ITSVSSDSLVIQDFLSEKLPNFLMNTSAFVASYIVGFLLLWRLTIVGFPFIILLLIPGLM 187
Query: 186 FGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQ 245
+G+ ++ + MK+ E Y AG IAEQ +SS+RTVY++ +E + + +FS ALQ +++LG++Q
Sbjct: 188 YGRALIRISMKIREEYNEAGSIAEQVISSVRTVYAFGSEKKMIEKFSTALQGSVKLGLRQ 247
Query: 246 GFIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNL 305
G KG+ +GS G+ Y W F W GS +V G KGG++ V + GG S+ +L NL
Sbjct: 248 GLAKGIAIGSNGITYAIWGFLTWYGSRMVMNHGSKGGTVSSVIVCVTFGGTSLGQSLSNL 307
Query: 306 TAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQG 365
+EA V RI ++++R P ID+D+ G+ L RGE+EF V F YPSRP+T +
Sbjct: 308 KYFSEAFVVGERIMKVINRVPGIDSDNLEGQILEKTRGEVEFNHVKFTYPSRPETPIFDD 367
Query: 366 LNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGL 425
L LRVP+GK+V LVGGSGSGKST I+LLQRFYDP+ GE+L+DG I +L +KWLRSQMGL
Sbjct: 368 LCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGLPINKLQVKWLRSQMGL 427
Query: 426 VNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMS 485
V+QEPVLFATSI ENILFGK+ ASMD+V+ AAKA+NAH FI++ P+ Y+TQVG+ G Q+S
Sbjct: 428 VSQEPVLFATSIKENILFGKEDASMDEVVEAAKASNAHSFISQFPNSYQTQVGERGVQLS 487
Query: 486 GGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTI 545
GGQKQRIAIARA+I+ P ILLLDEATSALD++SER+VQEA+D S GRTT++IAHRLSTI
Sbjct: 488 GGQKQRIAIARAIIKSPIILLLDEATSALDSESERVVQEALDNASIGRTTIVIAHRLSTI 547
Query: 546 RTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQMD 605
R A++I V+ G+++E+GSH EL+ + +G +Y +V LQQ+ N + S +
Sbjct: 548 RNADVICVVHNGRIIETGSHEELLEKLDG-QYTSLVRLQQV------DNKESDHISVEEG 600
Query: 606 AINLYKRTIAPSPMSMRSSAAST-----PALNPFSPALSVGTPYSYTIQYDPDDDSLGDR 660
+ + + SP S +S P L+P D SL
Sbjct: 601 QASSLSKDLKYSPKEFIHSTSSNIVRDFPNLSP------------------KDGKSL--- 639
Query: 661 IDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSE 720
PS RL+ +N PEW AL GC+ + GAVQPI +Y GS++S+YF +
Sbjct: 640 -------VPSFKRLMSMNRPEWKHALYGCLGAALFGAVQPIYSYSSGSMVSVYFLASHDQ 692
Query: 721 IKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQE 780
IK K+R L F+G+A+ F+S++ QHY F+ MGE LTKR+RE++LGK++TFE+ WFD++
Sbjct: 693 IKEKTRIYVLLFVGLALFTFLSNISQHYGFAYMGEYLTKRIRERMLGKILTFEVNWFDKD 752
Query: 781 DNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPL 840
+N+S AIC+RLA +AN+VRSLVGDRMSLLVQ I + +GLV+SWR ++VM++VQP+
Sbjct: 753 ENSSGAICSRLAKDANMVRSLVGDRMSLLVQTISAVSITCAIGLVISWRFSIVMMSVQPV 812
Query: 841 VIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGP 900
++ +Y++ VL+KSM+ A K Q E S+LA+EAV N RTITAFSSQ+RI+ L K GP
Sbjct: 813 IVVCFYTQRVLLKSMSRNAIKGQDESSKLAAEAVSNIRTITAFSSQERIINLLKMVQEGP 872
Query: 901 KEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYV 960
+++S + SW +GI L +SQ T +AL +WYGG+L+ + + + FLI T V
Sbjct: 873 RKDSARQSWLAGIMLGTSQSLITCVSALNFWYGGKLIADGKMMSKEFLEIFLIFASTGRV 932
Query: 961 IAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPT 1020
IAEAG+MT D+ KGS+AV SVFA+LDR + I+P++P G + ++++G+I NV FAYPT
Sbjct: 933 IAEAGTMTKDLVKGSDAVASVFAVLDRNTTIEPENPDGY-VPKKVKGQISFSNVDFAYPT 991
Query: 1021 RPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNL 1080
RPD +I + S+ IE GK+ A+VG SG GKSTII L+ERFYDPLKG V +D +DIR+ +L
Sbjct: 992 RPDVIIFQNFSIDIEDGKSTAIVGPSGSGKSTIISLIERFYDPLKGIVKIDGRDIRSCHL 1051
Query: 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKADAR--ESEIKKAAVLANAHEFISGMKDGYD 1138
+ LR HIALVSQEPTLFAGTIRENI YG A + ESEI +AA ANAH+FI+ + +GYD
Sbjct: 1052 RSLRQHIALVSQEPTLFAGTIRENIMYGGASNKIDESEIIEAAKAANAHDFITSLSNGYD 1111
Query: 1139 TYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRT 1198
T CG+RGVQLSGGQKQRIA+ARA+LKNPS+LLLDEATSALDS SES+VQ+ALE++M+GRT
Sbjct: 1112 TCCGDRGVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSQSESVVQDALERLMVGRT 1171
Query: 1199 CVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
VV+AHRLSTIQK DTIAV++NG VVE G+H+ L+A GAY+SL+ Q
Sbjct: 1172 SVVIAHRLSTIQKCDTIAVLENGAVVECGNHSSLLAKGPKGAYFSLVSLQ 1221
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ2|AB22B_ARATH ABC transporter B family member 22 OS=Arabidopsis thaliana GN=ABCB22 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 1276 bits (3301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 642/1255 (51%), Positives = 883/1255 (70%), Gaps = 42/1255 (3%)
Query: 2 GGNDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDT-- 59
G +F +A+ D +LM G IG++GDG P++ F+ ++ND G+ SS + T
Sbjct: 5 GSVRSIFMHANSVDLVLMGLGLIGAVGDGFITPIIFFITGLLLNDIGD---SSFGDKTFM 61
Query: 60 --VDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQ 117
+ K + LLYVA + FVEG CWTRT ERQ SRMR +YL++VLRQ+VG+FD
Sbjct: 62 HAIMKNAVALLYVAGASLVICFVEGYCWTRTGERQASRMREKYLRAVLRQDVGYFDLH-- 119
Query: 118 GSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTL 177
++T V++++S+D+ IQ + EK+ N L S F + FI+ WRL++ P +
Sbjct: 120 -VTSTSDVITSVSSDTLVIQDVLSEKLPNFLMSASAFVASYIVGFIMLWRLTIVGFPFFI 178
Query: 178 MFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQK 237
+ ++PGL+ G+ ++ + K+ E Y AG IAEQA+S +RTVY++ +E + + +FS AL+
Sbjct: 179 LLLIPGLMCGRALINISRKIREEYNEAGSIAEQAISLVRTVYAFGSERKMISKFSAALEG 238
Query: 238 TMELGIKQGFIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLS 297
+++LG++QG KG+ +GS G+ Y W F W GS +V G KGG+IF + I GG S
Sbjct: 239 SVKLGLRQGIAKGIAIGSNGVTYAIWGFMTWYGSRMVMYHGAKGGTIFAVIICITYGGTS 298
Query: 298 VLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSR 357
+ L NL +EA VA RI E++ R P ID+D+ G+ L ++GE++F+ V F Y SR
Sbjct: 299 LGRGLSNLKYFSEAVVAGERIIEVIKRVPDIDSDNPRGQVLENIKGEVQFKHVKFMYSSR 358
Query: 358 PDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLK 417
P+T + L LR+P+GKSV LVGGSGSGKST I+LLQRFYDP+ GE+L+DG I++L +K
Sbjct: 359 PETPIFDDLCLRIPSGKSVALVGGSGSGKSTVISLLQRFYDPIVGEILIDGVSIKKLQVK 418
Query: 418 WLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQV 477
WLRSQMGLV+QEP LFATSI ENILFGK+ AS D+V+ AAK++NAHDFI++ P GY+TQV
Sbjct: 419 WLRSQMGLVSQEPALFATSIEENILFGKEDASFDEVVEAAKSSNAHDFISQFPLGYKTQV 478
Query: 478 GQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLI 537
G+ G QMSGGQKQRI+IARA+I+ P +LLLDEATSALD++SER+VQEA+D + GRTT++
Sbjct: 479 GERGVQMSGGQKQRISIARAIIKSPTLLLLDEATSALDSESERVVQEALDNATIGRTTIV 538
Query: 538 IAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTF 597
IAHRLSTIR ++I V K G++VE+GSH ELM + G+Y +V LQ M EN+ SND
Sbjct: 539 IAHRLSTIRNVDVICVFKNGQIVETGSHEELMENVD-GQYTSLVRLQIM--ENEESNDNV 595
Query: 598 NDFSHQMDAINLYKRTIAPSPMSM--RSSAASTPALNPFSPALSVGTPYSYTIQYDPDDD 655
+ + N K S +S+ RSS +T ++ D
Sbjct: 596 SVSMREGQFSNFNKDVKYSSRLSIQSRSSLFATSSI----------------------DT 633
Query: 656 SLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFR 715
+L I + PS RL+ +N PEW AL GC++++ GA+ PI AY GS++S+YF
Sbjct: 634 NLAGSIPKDK--KPSFKRLMAMNKPEWKHALYGCLSAVLYGALHPIYAYASGSMVSVYFL 691
Query: 716 TDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIG 775
T E+K K+R L F+G+AVL F+ S++Q YSF+ MGE LTKR+RE +L KL+TFE+
Sbjct: 692 TSHDEMKEKTRIYVLLFVGLAVLCFLISIIQQYSFAYMGEYLTKRIRENILSKLLTFEVS 751
Query: 776 WFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMI 835
WFD+++N+S +IC+RLA +ANVVRSLVG+R+SLLVQ I + +GL +SW+L++VMI
Sbjct: 752 WFDEDENSSGSICSRLAKDANVVRSLVGERVSLLVQTISAVSVACTLGLAISWKLSIVMI 811
Query: 836 AVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKE 895
A+QP+V+G +Y++ +++KS++ KA KAQ E S+LA+EAV N RTITAFSSQ+RIL L K
Sbjct: 812 AIQPVVVGCFYTQRIVLKSISKKAIKAQDESSKLAAEAVSNIRTITAFSSQERILKLLKM 871
Query: 896 TLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILL 955
GP+ E+++ SW +GI L +S+ T ++AL YWYG RL+ IT + F+ F++ +
Sbjct: 872 VQEGPQRENIRQSWLAGIVLATSRSLMTCTSALNYWYGARLIIDGKITSKAFFELFILFV 931
Query: 956 FTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVF 1015
T VIA+AG+MT D++KGS+AV SVFA+LDR + I+P+ P G + + ++G+I+ NV
Sbjct: 932 STGRVIADAGAMTMDLAKGSDAVGSVFAVLDRYTNIEPEKPDGF-VPQNIKGQIKFVNVD 990
Query: 1016 FAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDI 1075
FAYPTRPD +I K S+ I+ GK+ A+VG SG GKSTIIGL+ERFYDPLKG V +D +DI
Sbjct: 991 FAYPTRPDVIIFKNFSIDIDEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDI 1050
Query: 1076 RNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADAR--ESEIKKAAVLANAHEFISGM 1133
R+Y+L+ LR HI LVSQEP LFAGTIRENI YG A + ESEI +AA ANAH+FI +
Sbjct: 1051 RSYHLRSLRQHIGLVSQEPILFAGTIRENIMYGGASDKIDESEIIEAAKAANAHDFIVTL 1110
Query: 1134 KDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKM 1193
DGYDTYCG+RGVQLSGGQKQRIA+ARA+LKNPS+LLLDEATSALD+ SE +VQ+AL ++
Sbjct: 1111 SDGYDTYCGDRGVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDNQSERMVQDALGRL 1170
Query: 1194 MMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
M+GRT VV+AHRLSTIQ DTI V+ G+VVE G+H+ L+A G Y+SL+ Q
Sbjct: 1171 MVGRTSVVIAHRLSTIQNCDTITVLDKGKVVECGTHSSLLAKGPTGVYFSLVSLQ 1225
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ8|AB16B_ARATH ABC transporter B family member 16 OS=Arabidopsis thaliana GN=ABCB16 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1269 bits (3283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 638/1254 (50%), Positives = 877/1254 (69%), Gaps = 43/1254 (3%)
Query: 2 GGNDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDT-- 59
G +F +ADG D +LM G IG++GDG P++ F+ + ++ND+G S S +++T
Sbjct: 5 GSMRSIFMHADGVDWMLMGLGLIGAVGDGFITPILFFITAMLLNDFG---SFSFNDETFM 61
Query: 60 --VDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQ 117
+ K L +LYVA + F+EG CWTRT ERQ ++MR YL++VLRQ+VG+FD
Sbjct: 62 QPISKNALAMLYVACASWVICFLEGYCWTRTGERQAAKMRERYLRAVLRQDVGYFDLH-- 119
Query: 118 GSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTL 177
++T +++++S+DS IQ + EK+ N L S F + F+L WRL++ P +
Sbjct: 120 -VTSTSDIITSVSSDSLVIQDFLSEKLPNILMNASAFVGSYIVGFMLLWRLTIVGFPFII 178
Query: 178 MFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQK 237
+ ++PGL++G+ ++G+ K+ E Y AG IAEQA+SS+RTVY++V+E + + +FS+ALQ
Sbjct: 179 LLLIPGLMYGRALIGISRKIREEYNEAGSIAEQAISSVRTVYAFVSEKKMIEKFSDALQG 238
Query: 238 TMELGIKQGFIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLS 297
+++LG++QG KG+ +GS G++Y W F W GS +V G KGG++ V + GG +
Sbjct: 239 SVKLGLRQGLAKGIAIGSNGIVYAIWGFLTWYGSRMVMNYGYKGGTVSTVTVCVTFGGTA 298
Query: 298 VLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSR 357
+ AL NL +EA VA RI +M+ R P ID+D+ G L +RGE+EF +V YPSR
Sbjct: 299 LGQALSNLKYFSEAFVAGERIQKMIKRVPDIDSDNLNGHILETIRGEVEFNNVKCKYPSR 358
Query: 358 PDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLK 417
P+TL+ L L++P+GK+V LVGGSGSGKST I+LLQRFYDP EG++L+D I + +K
Sbjct: 359 PETLIFDDLCLKIPSGKTVALVGGSGSGKSTVISLLQRFYDPNEGDILIDSVSINNMQVK 418
Query: 418 WLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQV 477
WLRSQMG+V+QEP LFATSI ENILFGK+ AS D+V+ AAKA+NAH+FI++ P GY+TQV
Sbjct: 419 WLRSQMGMVSQEPSLFATSIKENILFGKEDASFDEVVEAAKASNAHNFISQFPHGYQTQV 478
Query: 478 GQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLI 537
G+ G MSGGQKQRIAIARALI+ P ILLLDEATSALD +SER+VQEA+D S GRTT++
Sbjct: 479 GERGVHMSGGQKQRIAIARALIKSPIILLLDEATSALDLESERVVQEALDNASVGRTTIV 538
Query: 538 IAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTF 597
IAHRLSTIR A++I VL G +VE+GSH++LM G+Y +V LQQM +E N +
Sbjct: 539 IAHRLSTIRNADIICVLHNGCIVETGSHDKLMEI--DGKYTSLVRLQQMKNEESCDNTSV 596
Query: 598 NDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDPDDDSL 657
++ ++ + + +P + S +S+ N L
Sbjct: 597 GVKEGRVSSL---RNDLDYNPRDLAHSMSSSIVTN------------------------L 629
Query: 658 GDRIDQSSYA-TPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRT 716
D I Q PS RL+ +N PEW AL GC+++ GAVQPI AY G +IS++F T
Sbjct: 630 SDSIPQDKKPLVPSFKRLMAMNRPEWKHALCGCLSASLGGAVQPIYAYSSGLMISVFFLT 689
Query: 717 DKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGW 776
+ +IK +R L F G+A+ F +S+ Q YSFS MGE LTKR+RE++L K++TFE+ W
Sbjct: 690 NHEQIKENTRIYVLLFFGLALFTFFTSISQQYSFSYMGEYLTKRIREQMLSKILTFEVNW 749
Query: 777 FDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIA 836
FD+E+N+S AIC+RLA +ANVVRSLVG+RMSLLVQ I + + +GLV++WR T+VMI+
Sbjct: 750 FDEEENSSGAICSRLAKDANVVRSLVGERMSLLVQTISTVMVACTIGLVIAWRFTIVMIS 809
Query: 837 VQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKET 896
VQP++I YY + VL+K+M+ KA AQ E S+LA+EAV N RTIT FSSQ+RI+ L +
Sbjct: 810 VQPVIIVCYYIQRVLLKNMSKKAIIAQDESSKLAAEAVSNIRTITTFSSQERIMKLLERV 869
Query: 897 LRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLF 956
GP+ ES + SW +GI L ++Q T ++AL +WYGG+L+ + + F+ FLI
Sbjct: 870 QEGPRRESARQSWLAGIMLGTTQSLITCTSALNFWYGGKLIADGKMVSKAFFELFLIFKT 929
Query: 957 TAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFF 1016
T IAEAG+MT+D++KGSN+V SVF +LDRR+ I+P++P G I +++G+I NV F
Sbjct: 930 TGRAIAEAGTMTTDLAKGSNSVDSVFTVLDRRTTIEPENPDGY-ILEKIKGQITFLNVDF 988
Query: 1017 AYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIR 1076
AYPTRP+ +I S++I GK+ A+VG S GKST+IGL+ERFYDPL+G V +D +DIR
Sbjct: 989 AYPTRPNMVIFNNFSIEIHEGKSTAIVGPSRSGKSTVIGLIERFYDPLQGIVKIDGRDIR 1048
Query: 1077 NYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADAR--ESEIKKAAVLANAHEFISGMK 1134
+Y+L+ LR H++LVSQEPTLFAGTIRENI YG+A + ESEI +A ANAHEFI+ +
Sbjct: 1049 SYHLRSLRQHMSLVSQEPTLFAGTIRENIMYGRASNKIDESEIIEAGKTANAHEFITSLS 1108
Query: 1135 DGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM 1194
DGYDTYCG+RGVQLSGGQKQRIA+AR ILKNPSILLLDEATSALDS SE +VQ+ALE +M
Sbjct: 1109 DGYDTYCGDRGVQLSGGQKQRIAIARTILKNPSILLLDEATSALDSQSERVVQDALEHVM 1168
Query: 1195 MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
+G+T VV+AHRLSTIQ DTIAV+ G+VVE G+H L+A G+Y+SL+ Q
Sbjct: 1169 VGKTSVVIAHRLSTIQNCDTIAVLDKGKVVESGTHASLLAKGPTGSYFSLVSLQ 1222
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LHK4|AB8B_ARATH Putative ABC transporter B family member 8 OS=Arabidopsis thaliana GN=ABCB8 PE=5 SV=1 | Back alignment and function description |
|---|
Score = 1071 bits (2770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/1239 (46%), Positives = 819/1239 (66%), Gaps = 49/1239 (3%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYG----NPSSSSLSNDTVDK 62
+FR+AD D +LM+ G++G+IGDGM + + +S ++N G NPSS++ + + K
Sbjct: 21 IFRFADWIDIVLMVLGSVGAIGDGMSTNVSLVFVSRIMNTLGYSQHNPSSTNFKEE-IQK 79
Query: 63 YTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTT 122
+L +Y+ + + AF+EG CW++T+ERQ ++R YL++VLRQEV FFD+ +T
Sbjct: 80 CSLYFVYLGLAILGVAFMEGYCWSKTSERQVMKIRRTYLEAVLRQEVSFFDSD----IST 135
Query: 123 FQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVP 182
+++ TIS D++ IQ + EK+ L ++S F L+FS SWRL++ A+P ++ ++P
Sbjct: 136 SEIIHTISTDTSLIQQLLSEKVPIFLMHISVFITGLVFSAYFSWRLTVVAIPTLVLLLIP 195
Query: 183 GLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELG 242
GL++GK ++ + K + Y A I EQA+SSI+T+ S+ AE + + ++S L++ +LG
Sbjct: 196 GLIYGKYLVHLSKKSFKEYTKANSIVEQALSSIKTILSFTAETQIIKKYSEVLERHKKLG 255
Query: 243 IKQGFIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGAL 302
+KQG KGL +GS G+ + WAF AW GS LV K E GG I+ AG+S ++GG+S+ AL
Sbjct: 256 LKQGLAKGLAVGSSGISFTIWAFLAWYGSRLVMHKQETGGRIYAAGISFVLGGISLGTAL 315
Query: 303 PNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKAL--SYVRGEIEFRDVYFCYPSRPDT 360
+ +EA VAA RI +DR ID +D + ++G +EF V Y SRP+T
Sbjct: 316 TEIRYFSEASVAAARICSRIDRISEIDGEDTKKGFIPGEKMKGRVEFERVTLVYLSRPET 375
Query: 361 LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLR 420
++L+ L V G+SV L+G SGSGKST IALLQRFYDP EG V +DG+ I+ L LKW+R
Sbjct: 376 IILKDFTLTVDVGQSVALMGASGSGKSTVIALLQRFYDPCEGFVRIDGFDIKTLQLKWMR 435
Query: 421 SQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQL 480
+G+V+Q+ LF TSI EN++FGK+ ASMD+VISAAKAANAH FIT+LP+GY+T +G
Sbjct: 436 QHIGVVSQDHALFGTSIMENLMFGKNKASMDEVISAAKAANAHGFITQLPNGYDTHIGNR 495
Query: 481 GFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAH 540
G +SGGQKQRIAIARA+IR+P ILLLDEATSALD +SE ++Q A+D+V+ GRTTL++AH
Sbjct: 496 GALLSGGQKQRIAIARAIIRNPVILLLDEATSALDGESETLIQNALDQVAAGRTTLVVAH 555
Query: 541 RLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQ-QMASENDTSNDTFND 599
+LST+R AN+I +L+ G V E GSH +LM + Y ++V+LQ Q E
Sbjct: 556 KLSTVRGANIIAMLENGSVRELGSHEDLMTK--NNHYAKLVKLQRQFGHE---------- 603
Query: 600 FSHQMDAINLYKRTIAPSPMSMRSSAASTPAL-NPFSPALSVGTPYSYTIQYDPDDDSLG 658
HQ D L R +P S+ S L N SP L V +P + + +
Sbjct: 604 --HQQD---LQDRVNSPEIQQRWSTMNSVIRLSNRSSPDLIV-SPITLESNHTT---KIN 654
Query: 659 DRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDK 718
+ I +S+ RLL PEW S+L+GCI++ GA+QP+ A +G +IS +F
Sbjct: 655 ENIPSTSFT-----RLLPFVSPEWKSSLVGCISATTFGAIQPVYALSIGGMISAFFAKSS 709
Query: 719 SEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFD 778
E++ K SL F+ + L+ +LLQHYSF+ MGE+L +R+R K+L K+ TFE WFD
Sbjct: 710 QEMQDKIHIYSLIFISLTFLSITLNLLQHYSFAKMGERLMQRLRLKMLEKIFTFEPAWFD 769
Query: 779 QEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQ 838
E+N ++ IC+RL E ++V+SLV DR+SLLVQ I G + I+GL++SW+L LVMIAVQ
Sbjct: 770 VEENFTSEICSRLNNEVSIVKSLVADRISLLVQTISGVTIAMIIGLLISWKLALVMIAVQ 829
Query: 839 PLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLR 898
PL I +Y++ VL+ ++ AQ SQ+ASEA+ NH+ +T+ S K+I+ +F
Sbjct: 830 PLSILCFYTKKVLLSKISNNYAYAQNRSSQIASEAIYNHKIVTSLGSTKKIIEIFDNAQY 889
Query: 899 GPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTA 958
K + K +W +G G+ S+Q + AL +WYGG L+ + I+ +F+ F +L+ T
Sbjct: 890 EAKRKGRKAAWLAGFGMGSAQCLTFLTWALDFWYGGVLVQKGEISAGDVFKTFFVLVSTG 949
Query: 959 YVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQM---RGRIELKNVF 1015
VIAEAGSMTSD++KG+ A+ SVF ILDR P S + + +M +GRIELKN+
Sbjct: 950 KVIAEAGSMTSDLAKGTAAISSVFNILDR-----PSSHENTNHGEKMGTIQGRIELKNID 1004
Query: 1016 FAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDI 1075
F+YP RP ++L+ SL I+ G ++ LVG SGCGKST+I L++RFYD G V +D +++
Sbjct: 1005 FSYPNRPSILVLRDFSLDIKPGTSIGLVGTSGCGKSTVIALIQRFYDVEIGCVKIDSENL 1064
Query: 1076 RNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKD 1135
R+ N+K R H ALVSQEP +++G+I++NI G+ +A E E+ +AA ANAH+FIS M+
Sbjct: 1065 RDINIKWYRKHTALVSQEPVVYSGSIQDNIILGRPEATEDEVVEAAKAANAHDFISAMEK 1124
Query: 1136 GYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM 1195
GY T CGERGVQLSGGQKQRIA+ARA L++P ILLLDE TS+LDS SE VQ+AL ++M
Sbjct: 1125 GYKTECGERGVQLSGGQKQRIAIARAFLRSPIILLLDEVTSSLDSNSEQEVQDALARIMA 1184
Query: 1196 GR--TCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
R T VVVAHRL+T++ D IA+I +G V+E GS++ L
Sbjct: 1185 SRNMTTVVVAHRLNTLKNLDCIALIVDGTVIETGSYDHL 1223
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1038 bits (2684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/1250 (44%), Positives = 805/1250 (64%), Gaps = 38/1250 (3%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYG-NPSSSSLSNDTVDKYTL 65
LF +AD D LLM G++G+I G P+ + ++N +G N V +Y+L
Sbjct: 29 LFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQMDLHQMVHEVSRYSL 88
Query: 66 RLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQV 125
+Y+ + V S++ E CW + ERQ + +R +YL++VL+Q+VGFFDT + T +
Sbjct: 89 YFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKYLEAVLKQDVGFFDTDAR----TGDI 144
Query: 126 VSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLL 185
V ++S D+ +Q AI EK+ N + YLSTF L+ F+ +W+L+L ++ + G L
Sbjct: 145 VFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIPGIAFAGGL 204
Query: 186 FGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQ 245
+ + G+ K ESY AG IAEQA++ +RTVYSYV E + L +S+A+Q T++LG K
Sbjct: 205 YAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNAYSDAIQYTLKLGYKA 264
Query: 246 GFIKGLLMG-SMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPN 304
G KGL +G + G+ + WA W + GG F A S I+GG+S+ + N
Sbjct: 265 GMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSN 324
Query: 305 LTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQ 364
L A ++ K A ++ E++++ P I D GK L V G IEF+DV F YPSRPD ++ +
Sbjct: 325 LGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQVHGNIEFKDVTFSYPSRPDVMIFR 384
Query: 365 GLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424
N+ P+GK+V +VGGSGSGKST ++L++RFYDP G++LLDG +I+ L LK+LR Q+G
Sbjct: 385 NFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQLKFLREQIG 444
Query: 425 LVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQM 484
LVNQEP LFAT+I ENIL+GK A+M +V +AA AANAH FIT LP GY+TQVG+ G Q+
Sbjct: 445 LVNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQVGERGVQL 504
Query: 485 SGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLST 544
SGGQKQRIAIARA+++DPKILLLDEATSALDA SE IVQEA+D+V GRTT+++AHRL T
Sbjct: 505 SGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTVVVAHRLCT 564
Query: 545 IRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQM 604
IR + I V++ G+VVE+G+H EL+ + G Y ++ Q+M D SN
Sbjct: 565 IRNVDSIAVIQQGQVVETGTHEELI--AKSGAYASLIRFQEMVGTRDFSN---------- 612
Query: 605 DAINLYKRTIAPSPMSMRSS----AASTPALNPFSPALSVGTPYSYTIQYDPDDDSLGDR 660
PS RS+ + ST +L+ S +L YSY+ D + + +
Sbjct: 613 -----------PSTRRTRSTRLSHSLSTKSLSLRSGSLR-NLSYSYSTGADGRIEMISNA 660
Query: 661 IDQSSYATPSQ--WRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDK 718
P +RLLK+N PEW +++G + SI SG + P A + ++I +++ TD
Sbjct: 661 ETDRKTRAPENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDY 720
Query: 719 SEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFD 778
++ K++ ++G + + L+QHY FS+MGE LT RVR +L ++ E+GWFD
Sbjct: 721 DSMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFD 780
Query: 779 QEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQ 838
++++ S+ I ARLAT+A V+S + +R+S+++Q + + S+IV ++ WR++L+++
Sbjct: 781 EDEHNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTF 840
Query: 839 PLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLR 898
PL++ + +++ + +K AG KA + S +A E V N RT+ AF++Q +IL LF LR
Sbjct: 841 PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELR 900
Query: 899 GPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTA 958
P++ SL S SG SQ S AL WYG L+++ + T + + F++L+ TA
Sbjct: 901 VPQKRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITA 960
Query: 959 YVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAY 1018
+AE S+ +I +G AV SVF++LDR++ IDPD ++ +RG IE ++V FAY
Sbjct: 961 NSVAETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDADADPVE-TIRGDIEFRHVDFAY 1019
Query: 1019 PTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNY 1078
P+RPD M+ + +L+I AG + ALVG SG GKS++I ++ERFYDPL G V +D +DIR
Sbjct: 1020 PSRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRL 1079
Query: 1079 NLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYD 1138
NLK LR I LV QEP LFA TI +NIAYGK A ESE+ AA ANAH FISG+ +GY
Sbjct: 1080 NLKSLRLKIGLVQQEPALFAATIFDNIAYGKDGATESEVIDAARAANAHGFISGLPEGYK 1139
Query: 1139 TYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRT 1198
T GERGVQLSGGQKQRIA+ARA+LKNP++LLLDEATSALD+ SE ++QEALE++M GRT
Sbjct: 1140 TPVGERGVQLSGGQKQRIAIARAVLKNPTVLLLDEATSALDAESECVLQEALERLMRGRT 1199
Query: 1199 CVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
VVVAHRLSTI+ D I VI++GR+VEQGSH+ELV+ GAY L++ Q
Sbjct: 1200 TVVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELVSRPE-GAYSRLLQLQ 1248
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates in auxin efflux and thus regulates the polar auxin basipetal transport (from auxin-producing leaves to auxin-sensitive tissues, and from root tips to root elongating zone). Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1001 bits (2587), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/1258 (43%), Positives = 785/1258 (62%), Gaps = 42/1258 (3%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYG-NPSSSSLSNDTVDKYTL 65
LFR+ADG D +LM G++G+ G PL + + ++N +G N ++ + V KY L
Sbjct: 32 LFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFGSNSNNVEKMMEEVLKYAL 91
Query: 66 RLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQV 125
L V + S++ E CW + ERQT++MR++YL++ L Q++ FFDT+ + S F
Sbjct: 92 YFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALNQDIQFFDTEVRTSDVVF-- 149
Query: 126 VSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLL 185
I+ D+ +Q AI EK+ N + Y++TF + F W+L+L L + + V G +
Sbjct: 150 --AINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTLAVVPLIAVIGGI 207
Query: 186 FGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQ 245
+ + K ES AG I EQ V IR V ++V E +S+AL+ +LG K
Sbjct: 208 HTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAYSSALKIAQKLGYKT 267
Query: 246 GFIKGLLMGSMG-MIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPN 304
G KG+ +G+ +++ +A W G YLV GG ++++GGL++ + P+
Sbjct: 268 GLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFAVMIGGLALGQSAPS 327
Query: 305 LTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQ 364
+ A +AKVAA +IF ++D P I+ + + G L V G +E ++V F YPSRPD +L
Sbjct: 328 MAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNVDFSYPSRPDVKILN 387
Query: 365 GLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424
L VPAGK++ LVG SGSGKST ++L++RFYDP G+VLLDG ++ L L+WLR Q+G
Sbjct: 388 NFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLKLRWLRQQIG 447
Query: 425 LVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQM 484
LV+QEP LFATSI ENIL G+ A ++ AA+ ANAH FI KLPDG++TQVG+ G Q+
Sbjct: 448 LVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDTQVGERGLQL 507
Query: 485 SGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLST 544
SGGQKQRIAIARA++++P ILLLDEATSALD++SE++VQEA+D+ GRTTLIIAHRLST
Sbjct: 508 SGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLIIAHRLST 567
Query: 545 IRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQM 604
IR A+L+ VL+ G V E G+H+EL ++GE G Y +++++Q+ A E SN
Sbjct: 568 IRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHETAMSN---------- 617
Query: 605 DAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVG-TPYSYTI-QYDPDDDSLGDRID 662
R + P S R+S S+P + S S G +PYS + + D SL ID
Sbjct: 618 ------ARKSSARPSSARNSV-SSPIMTRNS---SYGRSPYSRRLSDFSTSDFSLS--ID 665
Query: 663 QSSYAT------------PSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLI 710
SSY S WRL K+N PEW ALLG + S+ G++ AY + +++
Sbjct: 666 ASSYPNYRNEKLAFKDQANSFWRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVL 725
Query: 711 SIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLM 770
S+Y+ D + + +G++ + + LQH + ++GE LTKRVREK+L ++
Sbjct: 726 SVYYNPDHEYMIKQIDKYCYLLIGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLSAVL 785
Query: 771 TFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRL 830
E+ WFDQE+N SA I ARLA +AN VRS +GDR+S++VQ + + G VL WRL
Sbjct: 786 KNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRL 845
Query: 831 TLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRIL 890
LV++AV P+V+ + + + M +G A +G+QLA EA+ N RT+ AF+S+ +I+
Sbjct: 846 ALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEAKIV 905
Query: 891 GLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQA 950
L+ L P + +G G +QF AS AL WY L+ + +
Sbjct: 906 RLYTANLEPPLKRCFWKGQIAGSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRV 965
Query: 951 FLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIE 1010
F++L+ +A AE ++ D KG A+RSVF +LDR++EI+PD P + ++RG +E
Sbjct: 966 FMVLMVSANGAAETLTLAPDFIKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRGEVE 1025
Query: 1011 LKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFM 1070
LK++ F+YP+RPD I + LSL+ AGKT+ALVG SGCGKS++I L++RFY+P G V +
Sbjct: 1026 LKHIDFSYPSRPDIQIFRDLSLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMI 1085
Query: 1071 DEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFI 1130
D +DIR YNLK +R HIA+V QEP LF TI ENIAYG A E+EI +AA LA+AH+FI
Sbjct: 1086 DGKDIRKYNLKAIRKHIAIVPQEPCLFGTTIYENIAYGHECATEAEIIQAATLASAHKFI 1145
Query: 1131 SGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEAL 1190
S + +GY TY GERGVQLSGGQKQRIA+ARA+++ I+LLDEATSALD+ SE VQEAL
Sbjct: 1146 SALPEGYKTYVGERGVQLSGGQKQRIAIARALVRKAEIMLLDEATSALDAESERSVQEAL 1205
Query: 1191 EKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
++ GRT +VVAHRLSTI+ + IAVI +G+V EQGSH+ L+ G Y +I+ Q
Sbjct: 1206 DQACSGRTSIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNHPDGIYARMIQLQ 1263
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates directly in auxin efflux and thus regulates the polar (presumably basipetal) auxin transport (from root tips to root elongating zone). Transports also some auxin metabolites such as oxindoleacetic acid and indoleacetaldehyde. Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Confers resistance to herbicides such as dicamba, pendimethalin, oryzalin, and monosodium acid methanearsonate (MSMA), but not to herbicides such as glyphosate, atrazine, bentazon and fluazifop-p-butyl. Mediates also resistance to xenobiotics such as cycloheximide and the cytokinin N6-(2-isopentenyl)adenine (2IP). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPK2|AB2B_ARATH ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 983 bits (2541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/1255 (42%), Positives = 786/1255 (62%), Gaps = 54/1255 (4%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVIN----DYGNPSSSSLSNDTVDK 62
LF +AD D +LM G++G+ G P+ +IN Y P +S V K
Sbjct: 65 LFSFADFYDCVLMTLGSVGACIHGASVPIFFIFFGKLINIIGLAYLFPKQAS---HRVAK 121
Query: 63 YTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTT 122
Y+L +Y+++ + S+++E CW T ERQ ++MR YL+S+L Q++ FDT+ ++T
Sbjct: 122 YSLDFVYLSVAILFSSWLEVACWMHTGERQAAKMRRAYLRSMLSQDISLFDTE----AST 177
Query: 123 FQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVP 182
+V+S I++D +Q A+ EK+ N L Y+S F F W++SL L + + +
Sbjct: 178 GEVISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQISLVTLSIVPLIALA 237
Query: 183 GLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELG 242
G ++ + +G+I ++ +SY AG IAE+ + ++RTV ++ E + + AL+ T + G
Sbjct: 238 GGIYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRTVQAFTGEERAVRLYREALENTYKYG 297
Query: 243 IKQGFIKGLLMGSMG-MIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGA 301
K G KGL +GSM ++++ WA W S +V + GG F +++++ GLS+ A
Sbjct: 298 RKAGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKSFTTMLNVVIAGLSLGQA 357
Query: 302 LPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTL 361
P+++A AK AA IF+M++R T K G+ L V G I+F+D F YPSRPD +
Sbjct: 358 APDISAFVRAKAAAYPIFKMIERNTVTKTSAKSGRKLGKVDGHIQFKDATFSYPSRPDVV 417
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRS 421
+ LNL +PAGK V LVGGSGSGKST I+L++RFY+P+ G VLLDG I L +KWLR
Sbjct: 418 IFDRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGNNISELDIKWLRG 477
Query: 422 QMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLG 481
Q+GLVNQEP LFAT+I ENIL+GKD A+ +++ AAK + A FI LP+G+ETQVG+ G
Sbjct: 478 QIGLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFINNLPEGFETQVGERG 537
Query: 482 FQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHR 541
Q+SGGQKQRIAI+RA++++P ILLLDEATSALDA+SE+ VQEA+D+V GRTT+++AHR
Sbjct: 538 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHR 597
Query: 542 LSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMAS--ENDTSNDTFND 599
LST+R A++I V+ GK+VE G+H L++ +G Y ++ LQ+ AS N + N T +
Sbjct: 598 LSTVRNADIIAVVHEGKIVEFGNHENLISNPDGA-YSSLLRLQETASLQRNPSLNRTLSR 656
Query: 600 FSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDPDDDSLGD 659
H + Y R ++ + RSS S SV P D
Sbjct: 657 -PHSIK----YSRELSRT----RSSFCSERE--------SVTRP---------------D 684
Query: 660 RIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVG-SLISIYFRTDK 718
D S + RL + P+W + G I + +G+ P+ A V +L+S Y D
Sbjct: 685 GADPSKKVKVTVGRLYSMIRPDWMYGVCGTICAFIAGSQMPLFALGVSQALVSYYSGWD- 743
Query: 719 SEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFD 778
E + + + +++ F +V+ I ++H F MGE+LT RVRE + ++ EIGWFD
Sbjct: 744 -ETQKEIKKIAILFCCASVITLIVYTIEHICFGTMGERLTLRVRENMFRAILKNEIGWFD 802
Query: 779 QEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQ 838
+ DNTS+ + +RL ++A +++++V DR ++L+Q + V S+I+ +L+WRLTLV++A
Sbjct: 803 EVDNTSSMLASRLESDATLLKTIVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVLATY 862
Query: 839 PLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLR 898
PLVI + S + M+ G KA + + LA E+V N RT+ AF ++++IL L+ L
Sbjct: 863 PLVISGHISEKLFMQGYGGDLNKAYLKANMLAGESVSNIRTVAAFCAEEKILELYSRELL 922
Query: 899 GPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTA 958
P + S + +G+ SQFF +S LA WYG L+ + L + + + F++L+ TA
Sbjct: 923 EPSKSSFRRGQIAGLFYGVSQFFIFSSYGLALWYGSTLMDKGLAGFKSVMKTFMVLIVTA 982
Query: 959 YVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAY 1018
+ E ++ D+ KG+ V SVF ILDR+++I ++ + + + G IELK V F+Y
Sbjct: 983 LAMGETLALAPDLLKGNQMVASVFEILDRKTQIVGETSEELN---NVEGTIELKGVHFSY 1039
Query: 1019 PTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNY 1078
P+RPD +I + L + AGK++ALVGQSG GKS++I L+ RFYDP G V ++ +DI+
Sbjct: 1040 PSRPDVVIFRDFDLIVRAGKSMALVGQSGSGKSSVISLILRFYDPTAGKVMIEGKDIKKL 1099
Query: 1079 NLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYD 1138
+LK LR HI LV QEP LFA TI ENI YG A +SE+ ++A+LANAH FI+ + +GY
Sbjct: 1100 DLKALRKHIGLVQQEPALFATTIYENILYGNEGASQSEVVESAMLANAHSFITSLPEGYS 1159
Query: 1139 TYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRT 1198
T GERGVQ+SGGQ+QRIA+ARAILKNP+ILLLDEATSALD SE +VQ+AL+++M RT
Sbjct: 1160 TKVGERGVQMSGGQRQRIAIARAILKNPAILLLDEATSALDVESERVVQQALDRLMANRT 1219
Query: 1199 CVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGGSSP 1253
VVVAHRLSTI+ +DTI+V+ G++VEQGSH +LV L++ G Y+ LI Q P
Sbjct: 1220 TVVVAHRLSTIKNADTISVLHGGKIVEQGSHRKLV-LNKSGPYFKLISLQQQQQP 1273
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1255 | ||||||
| 224124238 | 1251 | multidrug/pheromone exporter, MDR family | 0.994 | 0.997 | 0.783 | 0.0 | |
| 255563677 | 1217 | multidrug resistance protein 1, 2, putat | 0.964 | 0.995 | 0.767 | 0.0 | |
| 356545153 | 1243 | PREDICTED: putative multidrug resistance | 0.985 | 0.995 | 0.746 | 0.0 | |
| 356515002 | 1243 | PREDICTED: putative multidrug resistance | 0.988 | 0.998 | 0.747 | 0.0 | |
| 449468490 | 1249 | PREDICTED: putative multidrug resistance | 0.984 | 0.989 | 0.737 | 0.0 | |
| 357474799 | 1248 | ABC transporter B family member [Medicag | 0.980 | 0.985 | 0.718 | 0.0 | |
| 359493766 | 1252 | PREDICTED: ABC transporter B family memb | 0.995 | 0.997 | 0.725 | 0.0 | |
| 224115226 | 1171 | multidrug/pheromone exporter, MDR family | 0.930 | 0.997 | 0.732 | 0.0 | |
| 359473162 | 1245 | PREDICTED: ABC transporter B family memb | 0.990 | 0.998 | 0.682 | 0.0 | |
| 147867379 | 1245 | hypothetical protein VITISV_012787 [Viti | 0.990 | 0.998 | 0.683 | 0.0 |
| >gi|224124238|ref|XP_002319279.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222857655|gb|EEE95202.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2013 bits (5214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 986/1258 (78%), Positives = 1142/1258 (90%), Gaps = 10/1258 (0%)
Query: 1 MGGNDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTV 60
MGG D +FRYAD KDKLLM FG +GSIGDG+QYPL ++VLS VIN+YG+ SS+S+S DTV
Sbjct: 1 MGGKDSMFRYADSKDKLLMFFGVLGSIGDGLQYPLTMYVLSHVINEYGS-SSASVSIDTV 59
Query: 61 DKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSS 120
+KY+L+LLYVAI VGLSAFVEGLCWTRTAERQTS MRMEYLKSVLRQEVGFFDTQE GSS
Sbjct: 60 NKYSLKLLYVAIAVGLSAFVEGLCWTRTAERQTSIMRMEYLKSVLRQEVGFFDTQEAGSS 119
Query: 121 TTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFI 180
TT QVVSTISND+NSIQVAIC+KI N LAY+STF FCL+ S++LSW+L+LAALPLTLMFI
Sbjct: 120 TTHQVVSTISNDANSIQVAICDKIPNCLAYMSTFVFCLVTSYMLSWKLALAALPLTLMFI 179
Query: 181 VPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTME 240
+PGL+FGK MM VIMKMIESYGVAGGIAEQAVSSIRTVYSYVAE++TL +FS ALQ+TME
Sbjct: 180 IPGLVFGKFMMDVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAENQTLDKFSRALQQTME 239
Query: 241 LGIKQGFIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLG 300
LGIKQGF KGLLMGSMGMIYVGW+FQAW+G+YLVTEKGEKGGSIFVAG++IIMGGLSVLG
Sbjct: 240 LGIKQGFAKGLLMGSMGMIYVGWSFQAWLGTYLVTEKGEKGGSIFVAGINIIMGGLSVLG 299
Query: 301 ALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDT 360
ALPNLT+ITEA A+TRIF+M+DRTP+ID++DK GKALSY+RGEI+F+D+YF YPSRPDT
Sbjct: 300 ALPNLTSITEAMAASTRIFQMIDRTPSIDSEDKKGKALSYIRGEIQFQDIYFNYPSRPDT 359
Query: 361 LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLR 420
+LQGLNL +PAGK+VGLVGGSGSGKST I+LLQRFYDP EG++LLDG+K+ RL LKW R
Sbjct: 360 PILQGLNLTIPAGKTVGLVGGSGSGKSTVISLLQRFYDPNEGQILLDGHKVNRLQLKWWR 419
Query: 421 SQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQL 480
SQMGLVNQEPVLFATSI ENILFGK+GASMDDV++AAK ANAHDFITKLPDGYETQVGQ
Sbjct: 420 SQMGLVNQEPVLFATSIKENILFGKEGASMDDVVNAAKDANAHDFITKLPDGYETQVGQF 479
Query: 481 GFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAH 540
GFQ+SGGQKQRIAIARALIRDPKILLLDEATSALD QSER+VQ+AID+ SKGRTT+ IAH
Sbjct: 480 GFQLSGGQKQRIAIARALIRDPKILLLDEATSALDVQSERMVQDAIDEASKGRTTITIAH 539
Query: 541 RLSTIRTANLIMVLKAGKVVESGSHNELM--NRGEGGEYYQMVELQQMASENDTSNDTFN 598
RLSTIRTANLI+VL+AG+V+ESGSH +LM N G+GGEY++MV+L QMAS+N+ S N
Sbjct: 540 RLSTIRTANLIVVLQAGRVIESGSHEQLMQKNDGQGGEYFRMVQL-QMASQNEAS----N 594
Query: 599 DFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDPDDDSLG 658
DF++ D + ++ + APSP+S+R S TP LNPFSPA S+GTPYS++I YDP D+S
Sbjct: 595 DFTYHNDGHSFHRMSPAPSPLSVRRSVPGTPLLNPFSPAFSMGTPYSFSI-YDPADESFE 653
Query: 659 DRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDK 718
D + Q +Y PSQWRLL++N PEWGSAL+GC+A+IGSGAVQPINAYCVGSLIS YF +DK
Sbjct: 654 DDLYQLNYPAPSQWRLLRMNAPEWGSALIGCLAAIGSGAVQPINAYCVGSLISNYFLSDK 713
Query: 719 SEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFD 778
S K KS LSL FLG+A L+FI+SLLQHY+F+VMGEKLT+RVREKLL KLMTFEIGWFD
Sbjct: 714 SAAKHKSNKLSLVFLGIAALDFITSLLQHYNFAVMGEKLTRRVREKLLAKLMTFEIGWFD 773
Query: 779 QEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQ 838
++NTSA+ICA+LATEAN+ RSLVGDRMSLLVQA FGS+F+Y +GL+L+WRL LVMIAVQ
Sbjct: 774 DDENTSASICAKLATEANMFRSLVGDRMSLLVQAFFGSLFAYTLGLILTWRLALVMIAVQ 833
Query: 839 PLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLR 898
PLV+GSYYS++VLMKSMAGKA+KAQKEGSQLASEAVINHRTITAFSSQ+R+LGLF+ TLR
Sbjct: 834 PLVVGSYYSKSVLMKSMAGKAQKAQKEGSQLASEAVINHRTITAFSSQRRMLGLFRATLR 893
Query: 899 GPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTA 958
GP+EES +HSW SG GLFSSQF NTASTALA+WYGGRLLT+ LI+PEHLFQAFLILLF+A
Sbjct: 894 GPREESARHSWLSGFGLFSSQFLNTASTALAFWYGGRLLTEGLISPEHLFQAFLILLFSA 953
Query: 959 YVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGR-DIKRQMRGRIELKNVFFA 1017
YVIAEAGSMT+D+SKG NA+RSV AILDR+SEIDP++ G DIK++++G++E NVFFA
Sbjct: 954 YVIAEAGSMTNDLSKGGNAIRSVLAILDRKSEIDPNNSWGALDIKKKLKGQVEFNNVFFA 1013
Query: 1018 YPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRN 1077
YPTRPDQMI KGL+LKI+AGKT+ALVG SG GKST+IGL+ERFYDP+KG+VF+D QD+++
Sbjct: 1014 YPTRPDQMIFKGLNLKIDAGKTMALVGPSGSGKSTVIGLIERFYDPMKGTVFIDGQDVKS 1073
Query: 1078 YNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGY 1137
YNL+ LRSHIALVSQEPTLFAGTIRENIAYGK DARESEI+KAAVLANAHEFISGMK+GY
Sbjct: 1074 YNLRLLRSHIALVSQEPTLFAGTIRENIAYGKEDARESEIRKAAVLANAHEFISGMKEGY 1133
Query: 1138 DTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGR 1197
DTYCGERGVQLSGGQKQRIALARAI+K+PSILLLDEATSALDSVSESLVQEALEKMM+GR
Sbjct: 1134 DTYCGERGVQLSGGQKQRIALARAIIKDPSILLLDEATSALDSVSESLVQEALEKMMVGR 1193
Query: 1198 TCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGGSSPFR 1255
TCVV+AHRLSTIQKS+ I+VIKNG+VVEQGSH++L+ L GGAYYSL + Q GSS +
Sbjct: 1194 TCVVIAHRLSTIQKSNCISVIKNGKVVEQGSHSQLMELGSGGAYYSLTRIQSGSSSYH 1251
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255563677|ref|XP_002522840.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223537924|gb|EEF39538.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1960 bits (5077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 966/1258 (76%), Positives = 1101/1258 (87%), Gaps = 47/1258 (3%)
Query: 1 MGGNDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTV 60
MGG + +FRYADG DKLLM FG +GSIGDG+QYP+ ++VLS VIN+YG+P+S L+N+TV
Sbjct: 1 MGGKNSMFRYADGIDKLLMFFGALGSIGDGLQYPVTMYVLSHVINEYGSPNSP-LTNETV 59
Query: 61 DKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSS 120
D+Y+L+LLYVAI VGLSAF+EG+CWTRTAERQ SRMR EYLKSVLRQEVGFFDTQE GSS
Sbjct: 60 DRYSLKLLYVAIAVGLSAFIEGMCWTRTAERQISRMRTEYLKSVLRQEVGFFDTQEAGSS 119
Query: 121 TTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFI 180
TT+QVVSTISND+N+IQVAICEKI + L ++STF FCL+FSFILSW+L+LAALPLT+MFI
Sbjct: 120 TTYQVVSTISNDANAIQVAICEKIPDCLTFMSTFVFCLVFSFILSWKLALAALPLTMMFI 179
Query: 181 VPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTME 240
+PGL+FGKLMM VIMKMIESYG+AGGI EQA+SSIRTVYSYVAE +T+ FS ALQKTME
Sbjct: 180 IPGLVFGKLMMDVIMKMIESYGIAGGIVEQAISSIRTVYSYVAESQTIDNFSGALQKTME 239
Query: 241 LGIKQGFIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLG 300
LGIKQGF KGL+MGSMG+IYVGWAFQAWVG+YLVT KGEKGGSIFVAG+++IMGGLS+LG
Sbjct: 240 LGIKQGFAKGLMMGSMGIIYVGWAFQAWVGTYLVTSKGEKGGSIFVAGINVIMGGLSILG 299
Query: 301 ALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDT 360
ALPNLTAITEA VAATRIFEM+DR+P+ID++DK GKALSYVRGEIEF+D+YF YPSRPDT
Sbjct: 300 ALPNLTAITEATVAATRIFEMIDRSPSIDSEDKKGKALSYVRGEIEFKDIYFSYPSRPDT 359
Query: 361 LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLR 420
+LQGLNL +PAGK+VGLVGGSGSGKST IALLQRFYDP+EGEVLLDGYKIRRL LKWLR
Sbjct: 360 PILQGLNLTIPAGKTVGLVGGSGSGKSTIIALLQRFYDPIEGEVLLDGYKIRRLQLKWLR 419
Query: 421 SQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQL 480
SQ+GLVNQEPVLFATSI ENILFGK+GASMDDVI+AAKAANAHDF+ KLPDGYETQVGQ
Sbjct: 420 SQIGLVNQEPVLFATSIKENILFGKEGASMDDVITAAKAANAHDFVVKLPDGYETQVGQF 479
Query: 481 GFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAH 540
GFQMSGGQKQRIAIARALIR+PKILLLDEATSALD QSER+VQEAID+ SKGRTT+ IAH
Sbjct: 480 GFQMSGGQKQRIAIARALIRNPKILLLDEATSALDTQSERLVQEAIDQASKGRTTITIAH 539
Query: 541 RLSTIRTANLIMVLKAGKVVESGSHNELM--NRGEGGEYYQMVELQQMASENDTSNDTFN 598
RLSTIRTANLI+VL+AG+V+ESG+H +LM N G+GGEY+QMV+LQQM +EN+ +
Sbjct: 540 RLSTIRTANLILVLQAGRVIESGTHEKLMQINDGQGGEYFQMVQLQQMTAENEAP----S 595
Query: 599 DFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDPDDDSLG 658
DF + D N +K APSP+S+RSSA +TP L PFSPA S GTPYSY++ YDPDDDS+
Sbjct: 596 DFGYNNDGRNFHKTNAAPSPISIRSSAQNTPVLYPFSPAFSFGTPYSYSVPYDPDDDSVE 655
Query: 659 DRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDK 718
D + + Y PSQWRLLK+N PEWG A +GC+A+IGSGAVQPINAYCVGSLIS YFR DK
Sbjct: 656 DDMKRLDYPAPSQWRLLKMNAPEWGRAFIGCLAAIGSGAVQPINAYCVGSLISNYFRIDK 715
Query: 719 SEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFD 778
S+I+ +SR LSL FLG+A LNF SSLLQHY+F+VMGEKLTKRVREKLL KLMTFEIGWFD
Sbjct: 716 SDIRHRSRILSLVFLGIAALNFTSSLLQHYNFAVMGEKLTKRVREKLLEKLMTFEIGWFD 775
Query: 779 QEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQ 838
++NTSAAICA+ ATEAN+VRSLVGDRMSLLVQA+FGS+F+Y + LVLSWRL LVMIAVQ
Sbjct: 776 DDENTSAAICAKFATEANMVRSLVGDRMSLLVQAVFGSIFAYALALVLSWRLALVMIAVQ 835
Query: 839 PLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLR 898
P V+GSYYSR+VLMKSM+GKA+KAQKE + LGLFK+T
Sbjct: 836 PFVVGSYYSRSVLMKSMSGKAQKAQKE---------------------EAXLGLFKDT-- 872
Query: 899 GPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTA 958
P+ S+QFFNTASTALAYWYGGRLLT+ I+ EHLFQAFLILLFTA
Sbjct: 873 -PE---------------SAQFFNTASTALAYWYGGRLLTEGQISAEHLFQAFLILLFTA 916
Query: 959 YVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAY 1018
YVIAEAGSMTSD+SKG NA+RSVF ILDR+SEIDPDS G DIK++++GR++LKNVFFAY
Sbjct: 917 YVIAEAGSMTSDLSKGGNAIRSVFTILDRKSEIDPDSSWGLDIKKEIKGRVDLKNVFFAY 976
Query: 1019 PTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNY 1078
PTRPDQMI KGL+LKI+AG TVALVG SG GKST+IGL+ERFYDP KGS+ +D QDI+NY
Sbjct: 977 PTRPDQMIFKGLNLKIDAGNTVALVGPSGSGKSTVIGLIERFYDPTKGSILIDGQDIKNY 1036
Query: 1079 NLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYD 1138
L+ LRSHIALVSQEPTLFAGTIRENI YGK +A ESEI+KAAVLANA EFISGMKDGYD
Sbjct: 1037 KLRMLRSHIALVSQEPTLFAGTIRENIIYGKENATESEIRKAAVLANADEFISGMKDGYD 1096
Query: 1139 TYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRT 1198
TYCGERGVQLSGGQKQRIALARAI+KNPSILLLDEATSALDSVSESLVQEALEKMM+GRT
Sbjct: 1097 TYCGERGVQLSGGQKQRIALARAIIKNPSILLLDEATSALDSVSESLVQEALEKMMVGRT 1156
Query: 1199 CVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ-GGSSPFR 1255
CVVVAHRLSTIQKS+ IAVIKNG+VVE+GSHNELV+L RGG YYSLIK Q SSP+R
Sbjct: 1157 CVVVAHRLSTIQKSNCIAVIKNGKVVEEGSHNELVSLGRGGVYYSLIKGQSSSSSPYR 1214
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356545153|ref|XP_003541009.1| PREDICTED: putative multidrug resistance protein-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1944 bits (5037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 935/1252 (74%), Positives = 1099/1252 (87%), Gaps = 15/1252 (1%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLR 66
+FRYADG DKLLM FGT+G +GDG+Q PLM+++LS VIN YG+ +S L+ V+KY L+
Sbjct: 1 MFRYADGVDKLLMFFGTLGCLGDGLQTPLMMYILSDVINAYGD-KNSHLTKHDVNKYALK 59
Query: 67 LLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVV 126
L A+GVGLSAF+EG+CWTRTAERQ SRMRMEYLKSVLRQEVGFFDTQ GSSTT+QVV
Sbjct: 60 LFCAALGVGLSAFIEGICWTRTAERQASRMRMEYLKSVLRQEVGFFDTQIAGSSTTYQVV 119
Query: 127 STISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLF 186
S IS+D+N+IQV +CEKI + LAY+STF FC +F+F+LSWRL+LAA+PL++MFIVP L+F
Sbjct: 120 SLISSDANTIQVVLCEKIPDCLAYMSTFLFCHIFAFVLSWRLTLAAIPLSVMFIVPALVF 179
Query: 187 GKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQG 246
GK+M+ ++MKMIESYGVAGGIAEQA+SSIRTVYSYV E++TL RFS+ALQKTME GIKQG
Sbjct: 180 GKIMLDLVMKMIESYGVAGGIAEQAISSIRTVYSYVGENQTLNRFSSALQKTMEFGIKQG 239
Query: 247 FIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLT 306
F KGL++GSMG+IY+ W FQAWVG++L+T KGE+GG +FVAG +++MGGLS+L ALPNLT
Sbjct: 240 FAKGLMLGSMGVIYISWGFQAWVGTFLITNKGEQGGHVFVAGFNVLMGGLSILSALPNLT 299
Query: 307 AITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGL 366
AITEA A TR+FEM+DR P+ID++DK GKALSYVRGEIEF+D+YFCYPSRPDT VLQG
Sbjct: 300 AITEATAAVTRLFEMIDRVPSIDSEDKKGKALSYVRGEIEFQDIYFCYPSRPDTPVLQGF 359
Query: 367 NLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLV 426
NL VPAGKSVGLVGGSGSGKST IALL+RFYDPVEG +LLDG+K RL LKWLRSQ+GLV
Sbjct: 360 NLTVPAGKSVGLVGGSGSGKSTIIALLERFYDPVEGLILLDGHKTNRLQLKWLRSQLGLV 419
Query: 427 NQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSG 486
NQEPVLFATSI ENILFGK+GASM+ VISAAKAANAHDFI KLPDGYETQVGQ GFQ+SG
Sbjct: 420 NQEPVLFATSIKENILFGKEGASMESVISAAKAANAHDFIVKLPDGYETQVGQFGFQLSG 479
Query: 487 GQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR 546
GQKQRIAIARAL+RDPK+LLLDEATSALDAQSER+VQ AID+ SKGRTT+IIAHRLSTIR
Sbjct: 480 GQKQRIAIARALLRDPKVLLLDEATSALDAQSERVVQAAIDQASKGRTTIIIAHRLSTIR 539
Query: 547 TANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASENDTSND----TFNDFSH 602
TANLI VL++G+V+E G+HNELM +G EY MVELQQ+ ++ND S T SH
Sbjct: 540 TANLIAVLQSGRVIELGTHNELMELTDG-EYAHMVELQQITTQNDESKPSNLLTEGKSSH 598
Query: 603 QMDAINLYKRTIAPSP-MSMRSSAASTPALNPFSPALSVGTPYSYTIQYDPDDDSLGDRI 661
+M ++ SP +S RSS TP L PFS S+GTPYSY+IQYDPDDDS D +
Sbjct: 599 RM--------SVPQSPTVSFRSSTVGTPMLYPFSQGFSMGTPYSYSIQYDPDDDSFEDNL 650
Query: 662 DQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEI 721
++++ PSQWRLLK+N PEWG A+LG + +IGSGAVQP+NAYCVG+LIS+YF TD SE+
Sbjct: 651 KRTNHPAPSQWRLLKMNTPEWGRAMLGILGAIGSGAVQPVNAYCVGTLISVYFETDSSEM 710
Query: 722 KSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQED 781
KSK++ L+L FLG+ V NF +S+LQHY+F+VMGE+LTKR+REK+L KLMTFEIGWFD ED
Sbjct: 711 KSKAKVLALVFLGIGVFNFFTSILQHYNFAVMGERLTKRIREKILEKLMTFEIGWFDHED 770
Query: 782 NTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLV 841
NTSA+ICARL++EAN+VRSLVGDRMSLL QAIFGS+F+Y +GLVL+WRL+LVMIAVQPLV
Sbjct: 771 NTSASICARLSSEANLVRSLVGDRMSLLAQAIFGSIFAYTLGLVLTWRLSLVMIAVQPLV 830
Query: 842 IGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPK 901
IGS+YSR+VLMKSMA KARKAQ+EGSQLASEAVINHRTITAFSSQKR+L LFK T+ GPK
Sbjct: 831 IGSFYSRSVLMKSMAEKARKAQREGSQLASEAVINHRTITAFSSQKRMLALFKSTMVGPK 890
Query: 902 EESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVI 961
E+S++ SW SG GLFSSQFFNT+STALAYWYGGRLL I P+HLFQAFLILLFTAY+I
Sbjct: 891 EDSIRQSWISGFGLFSSQFFNTSSTALAYWYGGRLLIDGKIEPKHLFQAFLILLFTAYII 950
Query: 962 AEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTR 1021
A+AGSMTSD+SKG +AV SVFAILDR++EIDP++ G + KR++RGR+ELKNVFFAYP+R
Sbjct: 951 ADAGSMTSDLSKGRSAVGSVFAILDRKTEIDPETSWGGEKKRKLRGRVELKNVFFAYPSR 1010
Query: 1022 PDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLK 1081
PDQMI KGL+LK+E G+TVALVG SGCGKST+IGL+ERFYDP KG+V +DEQDI++YNL+
Sbjct: 1011 PDQMIFKGLNLKVEPGRTVALVGHSGCGKSTVIGLIERFYDPAKGTVCIDEQDIKSYNLR 1070
Query: 1082 QLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYC 1141
LRS IALVSQEPTLFAGTIRENIAYGK + ESEI++AA LANAHEFISGM DGY+TYC
Sbjct: 1071 MLRSQIALVSQEPTLFAGTIRENIAYGKENTTESEIRRAASLANAHEFISGMNDGYETYC 1130
Query: 1142 GERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVV 1201
GERGVQLSGGQKQRIALARAILKNP+ILLLDEATSALDSVSE LVQEALEK+M+GRTC+V
Sbjct: 1131 GERGVQLSGGQKQRIALARAILKNPAILLLDEATSALDSVSEILVQEALEKIMVGRTCIV 1190
Query: 1202 VAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGGSSP 1253
VAHRLSTIQKS+ IAVIKNG+VVEQGSHNEL++L R GAYYSL+K Q GSSP
Sbjct: 1191 VAHRLSTIQKSNYIAVIKNGKVVEQGSHNELISLGREGAYYSLVKLQSGSSP 1242
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515002|ref|XP_003526190.1| PREDICTED: putative multidrug resistance protein-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1942 bits (5031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 933/1248 (74%), Positives = 1097/1248 (87%), Gaps = 7/1248 (0%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLR 66
+FRYADG DKLLM FGT+GS+GDG+Q PLM+++LS VIN YG+ +S L+ V+KY LR
Sbjct: 1 MFRYADGMDKLLMFFGTLGSLGDGLQTPLMMYILSDVINAYGD-KNSHLTRHDVNKYALR 59
Query: 67 LLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVV 126
L A+GVGLSAF+EG+CWTRTAERQ SRMRMEYLKSVLRQEVGFFDTQ GSSTT+QVV
Sbjct: 60 LFCAALGVGLSAFIEGMCWTRTAERQASRMRMEYLKSVLRQEVGFFDTQTAGSSTTYQVV 119
Query: 127 STISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLF 186
S IS+D+N+IQV +CEKI + +AY+STF FC + +F+LSWRL+LAA+PL++MFIVP L+F
Sbjct: 120 SLISSDANTIQVVLCEKIPDCVAYMSTFLFCHILAFVLSWRLTLAAIPLSVMFIVPALVF 179
Query: 187 GKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQG 246
GK+M+ ++MKMIESYG+AGGIAEQA+SSIRTVYSYV E++TL RFS+ALQKTME GIKQG
Sbjct: 180 GKIMLDLVMKMIESYGIAGGIAEQAISSIRTVYSYVGENQTLTRFSSALQKTMEFGIKQG 239
Query: 247 FIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLT 306
F KGL++GSMG+IY+ W FQAWVG++L+T KGEKGG +FVAG +++MGGLS+L ALPNLT
Sbjct: 240 FAKGLMLGSMGVIYISWGFQAWVGTFLITNKGEKGGHVFVAGFNVLMGGLSILSALPNLT 299
Query: 307 AITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGL 366
AITEA A TR+FEM+DR P ID++DK GKALSYVRGEIEF+DVYFCYPSRPDT VLQG
Sbjct: 300 AITEATAAVTRLFEMIDRVPTIDSEDKKGKALSYVRGEIEFQDVYFCYPSRPDTPVLQGF 359
Query: 367 NLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLV 426
NL VPAGKSVGLVGGSGSGKST I L +RFYDPVEG +LLDG+K RL LKWLRSQ+GLV
Sbjct: 360 NLTVPAGKSVGLVGGSGSGKSTVIQLFERFYDPVEGVILLDGHKTNRLQLKWLRSQIGLV 419
Query: 427 NQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSG 486
NQEPVLFATSI ENILFGK+GASM+ VISAAKAANAHDFI KLPDGYETQVGQ GFQ+SG
Sbjct: 420 NQEPVLFATSIKENILFGKEGASMESVISAAKAANAHDFIVKLPDGYETQVGQFGFQLSG 479
Query: 487 GQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR 546
GQKQRIAIARAL+RDPK+LLLDEATSALDAQSER+VQ AID+ SKGRTT+IIAHRLSTIR
Sbjct: 480 GQKQRIAIARALLRDPKVLLLDEATSALDAQSERVVQAAIDQASKGRTTIIIAHRLSTIR 539
Query: 547 TANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQMDA 606
TANLI VL+AG+VVE G+HNELM +G EY MVELQQ+ ++ND S + + +
Sbjct: 540 TANLIAVLQAGRVVELGTHNELMELTDG-EYAHMVELQQITTQNDESKPS----NLLTEG 594
Query: 607 INLYKRTIAPSP-MSMRSSAASTPALNPFSPALSVGTPYSYTIQYDPDDDSLGDRIDQSS 665
+ ++ +I SP +S RSS TP L PFS S+GTPYSY+IQYDPDDDS D + + +
Sbjct: 595 KSSHRTSIPQSPTVSFRSSTVGTPMLYPFSQGFSMGTPYSYSIQYDPDDDSFEDNLKRPN 654
Query: 666 YATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKS 725
+ PSQWRLLK+N PEWG A+LG + +IGSGAVQP+NAYCVG+LIS+YF TD SE+KSK+
Sbjct: 655 HPAPSQWRLLKMNAPEWGRAMLGILGAIGSGAVQPVNAYCVGTLISVYFETDSSEMKSKA 714
Query: 726 RTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSA 785
+TL+L FLG+ V NF +S+LQHY+F+VMGE+LTKR+REK+L KLMTFEIGWFD EDNTSA
Sbjct: 715 KTLALVFLGIGVFNFFTSILQHYNFAVMGERLTKRIREKILEKLMTFEIGWFDHEDNTSA 774
Query: 786 AICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSY 845
+ICARL++EAN+VRSLVGDRMSLL QAIFGS+F+Y +GLVL+W+L+LVMIAVQPLVIGS+
Sbjct: 775 SICARLSSEANLVRSLVGDRMSLLAQAIFGSIFAYTLGLVLTWKLSLVMIAVQPLVIGSF 834
Query: 846 YSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESL 905
YSR+VLMKSMA KARKAQ+EGSQLASEAVINHRTITAFSSQKR+L LFK T+ GPK+ES+
Sbjct: 835 YSRSVLMKSMAEKARKAQREGSQLASEAVINHRTITAFSSQKRMLALFKSTMVGPKKESI 894
Query: 906 KHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAG 965
+ SW SG GLFSSQFFNT+STALAYWYGGRLL + I P+HLFQAFLILLFTAY+IA+AG
Sbjct: 895 RQSWISGFGLFSSQFFNTSSTALAYWYGGRLLIDDQIEPKHLFQAFLILLFTAYIIADAG 954
Query: 966 SMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQM 1025
SMTSD+SKGS+AV SVF ILDR++EIDP++ G + KR++RGR+ELKNVFFAYP+RPDQM
Sbjct: 955 SMTSDLSKGSSAVGSVFTILDRKTEIDPETSWGGEKKRKIRGRVELKNVFFAYPSRPDQM 1014
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS 1085
I KGL+LK+E G+TVALVG SGCGKST+IGL+ERFYDP KG+V +DEQDI+ YNL+ LRS
Sbjct: 1015 IFKGLNLKVEPGRTVALVGHSGCGKSTVIGLIERFYDPAKGTVCIDEQDIKFYNLRMLRS 1074
Query: 1086 HIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERG 1145
IALVSQEPTLFAGTIRENIAYGK + ESEI++AA LANAHEFISGM DGY+TYCGERG
Sbjct: 1075 QIALVSQEPTLFAGTIRENIAYGKENTTESEIRRAASLANAHEFISGMNDGYETYCGERG 1134
Query: 1146 VQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHR 1205
VQLSGGQKQRIALARAILKNP+ILLLDEATSALDSVSE LVQEALEK+M+GRTC+VVAHR
Sbjct: 1135 VQLSGGQKQRIALARAILKNPAILLLDEATSALDSVSEILVQEALEKIMVGRTCIVVAHR 1194
Query: 1206 LSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGGSSP 1253
LSTIQKS+ IAVIKNG+VVEQGSHNEL++L GAYYSL+K QGGSSP
Sbjct: 1195 LSTIQKSNYIAVIKNGKVVEQGSHNELISLGHEGAYYSLVKLQGGSSP 1242
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468490|ref|XP_004151954.1| PREDICTED: putative multidrug resistance protein-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1902 bits (4927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 920/1247 (73%), Positives = 1089/1247 (87%), Gaps = 11/1247 (0%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLR 66
+FRYAD DK LM FGT+GSIGDG+Q PLM+++L VIN YG+ +S L+ND VD + LR
Sbjct: 6 MFRYADSIDKFLMFFGTLGSIGDGLQVPLMMYILKDVINAYGD-KNSGLTNDMVDTFALR 64
Query: 67 LLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVV 126
LLY AIGVGLSAFVEGLCW RTAERQTSRMRMEYLKSVLRQEV FFDTQ STT +VV
Sbjct: 65 LLYTAIGVGLSAFVEGLCWARTAERQTSRMRMEYLKSVLRQEVSFFDTQT--GSTTHEVV 122
Query: 127 STISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLF 186
S IS+D++SIQVA+CEKI + LAY+STFFFC +F+FI+SWR + A +PL+ MFI PGL+F
Sbjct: 123 SLISSDASSIQVALCEKIPDCLAYMSTFFFCHVFAFIVSWRFTFAVIPLSAMFIGPGLVF 182
Query: 187 GKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQG 246
GK+MM +IMKMIESYGVAGGI EQAVSSIRTVY+YV E++T +FS ALQK+ME GIK G
Sbjct: 183 GKIMMDLIMKMIESYGVAGGIVEQAVSSIRTVYAYVGENQTQEKFSQALQKSMEFGIKSG 242
Query: 247 FIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLT 306
+KGL++GSMG+IY GW FQAWVG+YL+TEKGEKGG+IF+AG +++MGGLS+L ALP+LT
Sbjct: 243 LVKGLMLGSMGIIYAGWGFQAWVGTYLITEKGEKGGNIFIAGFNVLMGGLSILSALPHLT 302
Query: 307 AITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGL 366
+ITEA A TRI EM+DR D ++K KALS+V+GEIEF++VYF YPSRPDT VLQG
Sbjct: 303 SITEATSATTRILEMIDRVAETDREEKKEKALSHVKGEIEFQNVYFTYPSRPDTPVLQGF 362
Query: 367 NLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLV 426
NL+VPAGK VGLVGGSGSGKST I+LL+RFYDP +GE+LLDG+KI+R LKWLRSQMGLV
Sbjct: 363 NLKVPAGKRVGLVGGSGSGKSTVISLLERFYDPTDGEILLDGHKIKRFQLKWLRSQMGLV 422
Query: 427 NQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSG 486
NQEPVLFATSI ENI+FGKDGASM+ VI+AAKAANAHDFI KLP+GY+TQVGQ GFQMSG
Sbjct: 423 NQEPVLFATSIKENIMFGKDGASMEQVINAAKAANAHDFIVKLPEGYDTQVGQFGFQMSG 482
Query: 487 GQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR 546
GQKQRIAIARAL+RDPKILLLDEATSALDAQSER+VQEAIDK SKGRTT+ IAHRLSTI+
Sbjct: 483 GQKQRIAIARALLRDPKILLLDEATSALDAQSERMVQEAIDKASKGRTTITIAHRLSTIQ 542
Query: 547 TANLIMVLKAGKVVESGSHNELM--NRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQM 604
TA+ I+VLKAG+V+ESGSH+ELM N G+GGEY +MV+LQQMA +N+T F D + +M
Sbjct: 543 TAHQIVVLKAGEVIESGSHDELMLLNNGQGGEYLRMVQLQQMAVQNET----FYDTNIEM 598
Query: 605 DAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSV--GTPYSYTIQYDPDDDSLGDRID 662
D ++ + SP+S++S +TP L PFS A+S+ GTPYSY++Q+DPDD+S +
Sbjct: 599 DRRYRHRMSAPTSPISVKSGGHNTPVLYPFSTAMSISMGTPYSYSVQFDPDDESFEEDRK 658
Query: 663 QSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIK 722
Y +PSQWRLLK+N PEW ALLGCI ++GSGAVQPINAYCVG+LIS+YFR ++ IK
Sbjct: 659 HRVYPSPSQWRLLKMNAPEWRRALLGCIGALGSGAVQPINAYCVGALISVYFRANEPNIK 718
Query: 723 SKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDN 782
SKSR LSL FLG+ + NF++++LQHY+FS+MGE+LTKRVREK+L KLMTFEIGWFDQ++N
Sbjct: 719 SKSRNLSLVFLGIGIFNFLTNILQHYNFSIMGERLTKRVREKILEKLMTFEIGWFDQDEN 778
Query: 783 TSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVI 842
TSAAICARL+TEAN+VRSLVGDRMSLLVQAIF + F+Y VGLVLSWRLTLVMIAVQPLVI
Sbjct: 779 TSAAICARLSTEANMVRSLVGDRMSLLVQAIFSAAFAYSVGLVLSWRLTLVMIAVQPLVI 838
Query: 843 GSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKE 902
GS+Y+R+VLMKSMA KARKAQ+EGSQLASEAV NH+TI AFSSQK+IL LF TL+ PK+
Sbjct: 839 GSFYARSVLMKSMAEKARKAQREGSQLASEAVTNHKTIVAFSSQKKILWLFAATLKSPKK 898
Query: 903 ESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIA 962
ES + SW S +GLFSSQFFNTASTALAYWYGGRLLTQ++I+ EH+FQAFLILLFTAY+IA
Sbjct: 899 ESARQSWISALGLFSSQFFNTASTALAYWYGGRLLTQDMISSEHIFQAFLILLFTAYIIA 958
Query: 963 EAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRP 1022
+AGSMTSDIS+GSNAV SV AILDR++EIDP++ GRD KR+M+G++EL+++ F+YPTRP
Sbjct: 959 DAGSMTSDISRGSNAVGSVIAILDRKTEIDPENKSGRDHKRRMKGKVELRSICFSYPTRP 1018
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ 1082
+QMIL+GLSLKI+AGKTVALVGQSG GKSTIIGL+ERFYDP GS+ +DE DI+NYNL+
Sbjct: 1019 EQMILRGLSLKIDAGKTVALVGQSGSGKSTIIGLIERFYDPSTGSIHIDELDIKNYNLRW 1078
Query: 1083 LRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCG 1142
LRS IALVSQEPTLFAGTIRENIAYGK A ESEI++AAVLANAHEFISGMKD YDTYCG
Sbjct: 1079 LRSQIALVSQEPTLFAGTIRENIAYGKEKAGESEIREAAVLANAHEFISGMKDEYDTYCG 1138
Query: 1143 ERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVV 1202
ERG QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE+LVQEALEKMM+GRTC++V
Sbjct: 1139 ERGAQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSENLVQEALEKMMVGRTCIIV 1198
Query: 1203 AHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQG 1249
AHRLSTIQK++TIAVIKNG+VVEQGSH+EL+++ + G YYSL K Q
Sbjct: 1199 AHRLSTIQKANTIAVIKNGKVVEQGSHSELISMGQRGEYYSLTKSQA 1245
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357474799|ref|XP_003607685.1| ABC transporter B family member [Medicago truncatula] gi|355508740|gb|AES89882.1| ABC transporter B family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1895 bits (4910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 910/1267 (71%), Positives = 1085/1267 (85%), Gaps = 37/1267 (2%)
Query: 3 GNDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDK 62
G++ +FRYADG DKLLM FGT+GS+GDG+Q PLM+++LS VIN YG+ +S L+ V+K
Sbjct: 2 GSNSMFRYADGFDKLLMFFGTLGSLGDGLQNPLMMYILSDVINAYGD-KNSRLNQHDVNK 60
Query: 63 YTLRLLYVAIGVGLSAFV-------------EGLCWTRTAERQTSRMRMEYLKSVLRQEV 109
+ L+LL VAIGVG+SAF+ EG+CW RTAERQ SRMR+EYLKSVLRQEV
Sbjct: 61 FALKLLCVAIGVGISAFIVFLIDTNLIMATTEGICWNRTAERQASRMRVEYLKSVLRQEV 120
Query: 110 GFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLS 169
GFFDTQ GSSTT+QVVS IS+D+N++Q A+CEKI + L Y+STFFFC +F+F+LSWRL+
Sbjct: 121 GFFDTQTAGSSTTYQVVSLISSDANTVQSALCEKIPDCLTYMSTFFFCHIFAFVLSWRLA 180
Query: 170 LAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLI 229
LAA+PL++MFIVP L+FGK+M+ V MKMIESYGVAGGIAEQA+SSIRTV+SYV E++TL
Sbjct: 181 LAAIPLSIMFIVPALVFGKIMLDVTMKMIESYGVAGGIAEQAISSIRTVFSYVGENQTLK 240
Query: 230 RFSNALQKTMELGIKQGFIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGV 289
RFS AL+KTME GIKQGF KGL++GSMG+IYV W FQAWVG++L+++KGEKGG +FVAG
Sbjct: 241 RFSTALEKTMEFGIKQGFAKGLMLGSMGVIYVSWGFQAWVGTFLISDKGEKGGHVFVAGF 300
Query: 290 SIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRD 349
+I+MGGLS+L ALPNLTAI EA A TR++EM+DR P ID+++K GKALS+VRGEIEF+D
Sbjct: 301 NILMGGLSILSALPNLTAIMEASSAVTRLYEMIDRVPVIDSEEKKGKALSHVRGEIEFKD 360
Query: 350 VYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGY 409
+YFCYPSRPD+ VLQ NL +PAGK +GLVGGSGSGKST IALL+RFYDPVEGE+LLDG+
Sbjct: 361 IYFCYPSRPDSPVLQEFNLIIPAGKRIGLVGGSGSGKSTIIALLERFYDPVEGEILLDGH 420
Query: 410 KIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKL 469
KI RL LKWLRS +GLVNQEPVLFATSI ENILFGK+GASM+ VISAAK+ANAHDFI KL
Sbjct: 421 KINRLQLKWLRSNLGLVNQEPVLFATSIKENILFGKEGASMESVISAAKSANAHDFIVKL 480
Query: 470 PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV 529
PDGYETQVGQ GFQ+SGGQKQRIAIARAL+RDPK+LLLDEATSALD+QSER+VQ AID+
Sbjct: 481 PDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKVLLLDEATSALDSQSERVVQAAIDQA 540
Query: 530 SKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELM--NRGEGGEYYQMVELQQMA 587
SKGRTT+IIAHRLSTIRTA+ I VL+AGKV+E+GSHN LM N GEGGEY +MV+LQQ+
Sbjct: 541 SKGRTTIIIAHRLSTIRTADTIAVLQAGKVIETGSHNVLMEINGGEGGEYARMVKLQQVT 600
Query: 588 SENDTSNDTFNDFSHQMDAINLYKRTIAPSP-MSMRSSAASTPALNPFSPALSVGTPYSY 646
++ND + + Q++ + ++ +I SP MS +SS TP L PFS S+GTPYSY
Sbjct: 601 AQNDEIKHS----NLQLEGKSSHRMSIPQSPGMSFKSSTPGTPMLYPFSQGFSIGTPYSY 656
Query: 647 TIQYDPDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCV 706
+IQYD DDDS D +S++ PSQWRLLK+N PEWG +LG + +IGSGAVQPINAYCV
Sbjct: 657 SIQYDHDDDSYEDDFKRSNHPAPSQWRLLKMNAPEWGRGVLGVLGAIGSGAVQPINAYCV 716
Query: 707 GSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLL 766
G LIS+YF D S++KSK+R L+L FLG+ V NF +S+LQHY+F+VMGE+LTKR+REK+L
Sbjct: 717 GLLISVYFEPDTSKMKSKARALALVFLGIGVFNFFTSILQHYNFAVMGERLTKRIREKIL 776
Query: 767 GKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVL 826
KLM+FEIGWFD EDNTSAAICARLA+EAN+VRSLVGDRMSLL QAIFGS+F+Y VGLVL
Sbjct: 777 EKLMSFEIGWFDHEDNTSAAICARLASEANLVRSLVGDRMSLLAQAIFGSIFAYTVGLVL 836
Query: 827 SWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQ 886
+WRL+LVMIAVQPLVIGS+Y+R+VLMK+MA K RKAQ+EGSQLASEAVINHRTITAFSSQ
Sbjct: 837 TWRLSLVMIAVQPLVIGSFYARSVLMKTMAEKTRKAQREGSQLASEAVINHRTITAFSSQ 896
Query: 887 KRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEH 946
KR+L LFK T+ GPK+ES++ SW SG GLFSSQFFNT+STALAYWYGG LL + I P
Sbjct: 897 KRMLALFKATMTGPKQESIRQSWISGFGLFSSQFFNTSSTALAYWYGGSLLIKGQIEPTE 956
Query: 947 LFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMR 1006
LFQAFLILLFTAY+IAEAGSMTSDISKGSNAV SVF I KR++R
Sbjct: 957 LFQAFLILLFTAYIIAEAGSMTSDISKGSNAVGSVFQIK----------------KRKIR 1000
Query: 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
GR+ELKNVFFAYP+RP+QM+ +GL+LK+EAG+TVALVG SGCGKSTIIGL+ERFYDP+KG
Sbjct: 1001 GRVELKNVFFAYPSRPEQMVFQGLNLKVEAGRTVALVGHSGCGKSTIIGLIERFYDPIKG 1060
Query: 1067 SVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANA 1126
+V +DEQDI+ YNL+ LRSHIALVSQEPTLF+GTIRENIAYGK +A ESEI++AA +ANA
Sbjct: 1061 TVCIDEQDIKTYNLRMLRSHIALVSQEPTLFSGTIRENIAYGKENATESEIRRAATVANA 1120
Query: 1127 HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
HEFISGM +GY+T+CGERGVQLSGGQKQRIALARAILKNP+ILLLDEATSALDS SE LV
Sbjct: 1121 HEFISGMNEGYETHCGERGVQLSGGQKQRIALARAILKNPAILLLDEATSALDSASEVLV 1180
Query: 1187 QEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIK 1246
QEALEK+M+GRTC+ VAHRLSTIQ S++IAVIKNG+VVEQGSHNEL++L R GAY+SL+K
Sbjct: 1181 QEALEKIMVGRTCIAVAHRLSTIQNSNSIAVIKNGKVVEQGSHNELISLGRNGAYHSLVK 1240
Query: 1247 PQGGSSP 1253
Q GSSP
Sbjct: 1241 LQHGSSP 1247
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493766|ref|XP_002279336.2| PREDICTED: ABC transporter B family member 15-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1871 bits (4847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 913/1258 (72%), Positives = 1098/1258 (87%), Gaps = 9/1258 (0%)
Query: 1 MGGNDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTV 60
MG + +F+YADG DK LML GT+G IGDG+Q L +F+LS +INDYG S+SS++ V
Sbjct: 1 MGRKNSMFQYADGVDKWLMLLGTLGCIGDGLQSALSMFILSDIINDYGK-SNSSITIHIV 59
Query: 61 DKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSS 120
DKY L+LLYVA+GVG+SAF+EG+CWTRTAERQTSRMR++YLKSVLRQEVGFFD+Q SS
Sbjct: 60 DKYALKLLYVAVGVGISAFIEGICWTRTAERQTSRMRIKYLKSVLRQEVGFFDSQGADSS 119
Query: 121 TTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFI 180
T+QVVST+S+D+NSIQ I EKI + LAY + F FCLLF+FILSWRL+LA+LP T+MFI
Sbjct: 120 ITYQVVSTLSSDANSIQAVIGEKIPDCLAYTAAFIFCLLFAFILSWRLALASLPFTVMFI 179
Query: 181 VPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTME 240
+PGL FGKLMM + MKMIESYGVAGGIAEQA+SSIRTVYS+V EH+TL++FS ALQKTME
Sbjct: 180 IPGLGFGKLMMDLGMKMIESYGVAGGIAEQAISSIRTVYSFVGEHQTLVKFSQALQKTME 239
Query: 241 LGIKQGFIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLG 300
LGIKQGF KGL+M SMG+IYV WAFQAW+G+YLVT+KGE GG +FVAG +++MGGL VL
Sbjct: 240 LGIKQGFAKGLMMSSMGIIYVSWAFQAWIGTYLVTKKGESGGPLFVAGFNVLMGGLYVLS 299
Query: 301 ALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDT 360
ALPNLT+I+EA AATRIFEM+DR PA+D++D+ GKAL+YVRGEIEF+D++F YPSRPD+
Sbjct: 300 ALPNLTSISEATAAATRIFEMIDRVPALDSEDRKGKALAYVRGEIEFKDIHFSYPSRPDS 359
Query: 361 LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLR 420
+LQG +LRV AGK+VGLVGGSGSGKST I+LL+RFYDP +GE+LLDGYK+ RL+LKWLR
Sbjct: 360 PILQGFDLRVRAGKTVGLVGGSGSGKSTVISLLERFYDPTKGEILLDGYKVNRLNLKWLR 419
Query: 421 SQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQL 480
SQMGLVNQEPVLFATSI ENILFGK+GASM+ V+SAA AANAHDFITKLPDGYETQVGQ
Sbjct: 420 SQMGLVNQEPVLFATSIKENILFGKEGASMELVVSAATAANAHDFITKLPDGYETQVGQF 479
Query: 481 GFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAH 540
G Q+SGGQ+QRIAIARALIRDPKILLLDEATSALD +SERIVQ+A+D+ G+TT+++AH
Sbjct: 480 GVQLSGGQRQRIAIARALIRDPKILLLDEATSALDTESERIVQDALDQALVGKTTIVVAH 539
Query: 541 RLSTIRTANLIMVLKAGKVVESGSHNEL--MNRGEGGEYYQMVELQQMASENDTSNDTFN 598
RLSTIR A++I+VL+ G+VVE GSH+EL MN +GGEY++MV+LQQ A +++ D+F
Sbjct: 540 RLSTIRMASMIVVLQNGRVVEKGSHDELMQMNGRQGGEYFRMVQLQQKAMQSE--EDSFC 597
Query: 599 DFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDPDDDSLG 658
+Q D ++ APSP+S+RSS STPAL+ FSPA S+ P+S IQ+DP ++S
Sbjct: 598 S-DYQSDVKYQHRMYTAPSPISVRSSTPSTPALHAFSPAYSISAPFS--IQFDPSEESYE 654
Query: 659 DRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDK 718
+ ++S+Y PSQWRLLK+N PEW SALLGC+ +IGS AVQPINAYCVG+LIS+YF TD+
Sbjct: 655 EDSEKSTYRPPSQWRLLKMNAPEWKSALLGCLGAIGSAAVQPINAYCVGTLISVYFNTDE 714
Query: 719 SEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFD 778
S +KS+SR S FLG+ V NFI ++LQHY+F+VMGE+ TKRVREKLL KLMTFEIGWFD
Sbjct: 715 SSMKSESRFYSYLFLGLCVYNFIMNVLQHYNFAVMGERFTKRVREKLLEKLMTFEIGWFD 774
Query: 779 QEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQ 838
QE+N SAA+CARLATEA++VR+LVG+RMSLLVQA+F + F+Y +GLVL+WRLTLVMIAVQ
Sbjct: 775 QEENNSAAVCARLATEASMVRTLVGERMSLLVQAVFATSFAYGLGLVLTWRLTLVMIAVQ 834
Query: 839 PLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLR 898
PLVIGS+YSR VL KSM+ KARKAQKEGSQLASEA +NHRTITAFSSQ+RILGLFK++L+
Sbjct: 835 PLVIGSFYSRTVLAKSMSSKARKAQKEGSQLASEATVNHRTITAFSSQRRILGLFKDSLK 894
Query: 899 GPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTA 958
GP++E++K SW+SG GLF +QF TAS ALA+WYGGRL+TQ LITP+ LFQAFLIL FTA
Sbjct: 895 GPRKENVKLSWFSGFGLFMAQFLTTASMALAFWYGGRLMTQGLITPKRLFQAFLILTFTA 954
Query: 959 YVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDI-KRQMRGRIELKNVFFA 1017
+IA+AGSMTSD+SKGSNA+RSVFAILDR+SEIDP++ G D K ++GRIELKNVFFA
Sbjct: 955 KIIADAGSMTSDLSKGSNAIRSVFAILDRKSEIDPENSWGIDPEKTTVKGRIELKNVFFA 1014
Query: 1018 YPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRN 1077
YP RP+Q+ILKGLSLKIEAG+TVALVGQSG GKSTIIGL+ERFYDPL+GS+ +DE DI+N
Sbjct: 1015 YPARPNQLILKGLSLKIEAGRTVALVGQSGSGKSTIIGLIERFYDPLRGSIHIDELDIKN 1074
Query: 1078 YNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGY 1137
+NL+ LRS+IALVSQEPTLFA TIRENIAYGK +A ESEI+KAAVLANAHEFISGMKDGY
Sbjct: 1075 HNLRILRSNIALVSQEPTLFAATIRENIAYGKENATESEIRKAAVLANAHEFISGMKDGY 1134
Query: 1138 DTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGR 1197
DTYCGERGVQLSGGQKQR+A+ARAILKNPS+LLLDEATSALDS SE VQEAL+KMM+GR
Sbjct: 1135 DTYCGERGVQLSGGQKQRVAIARAILKNPSVLLLDEATSALDSASERSVQEALDKMMVGR 1194
Query: 1198 TCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGGSSPFR 1255
TC+V+AHRLSTIQ S+TIAVIKNG VVE+GSH+EL++ GG+YYSLIKPQ G SP+R
Sbjct: 1195 TCLVIAHRLSTIQNSNTIAVIKNGMVVEKGSHSELLSFGPGGSYYSLIKPQVGDSPYR 1252
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115226|ref|XP_002316977.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222860042|gb|EEE97589.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1859 bits (4816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 922/1258 (73%), Positives = 1058/1258 (84%), Gaps = 90/1258 (7%)
Query: 1 MGGNDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTV 60
MGG D +FRYADG DKLLM FG +GS+G+G+++PL ++VLS VINDYG+
Sbjct: 1 MGGKDSMFRYADGMDKLLMFFGVLGSVGEGLRHPLTMYVLSHVINDYGSS---------- 50
Query: 61 DKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSS 120
EGLCWTRTAERQTSRMR EYLKSVLRQEVGFFDTQ+ GSS
Sbjct: 51 --------------------EGLCWTRTAERQTSRMRTEYLKSVLRQEVGFFDTQDAGSS 90
Query: 121 TTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFI 180
TT+QVVSTISND+++IQVAICEKI + LA +S FFFCL+FSFILSW+ +LAALP LMFI
Sbjct: 91 TTYQVVSTISNDASAIQVAICEKIPDCLAQMSCFFFCLVFSFILSWKFTLAALPFALMFI 150
Query: 181 VPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTME 240
VPGL+FGKLMM V MKMIE+YGVAGGIAEQA+SSIRTVYSYVAE++TL RFS ALQ+T+E
Sbjct: 151 VPGLVFGKLMMDVTMKMIEAYGVAGGIAEQAISSIRTVYSYVAENQTLDRFSRALQETIE 210
Query: 241 LGIKQGFIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLG 300
LGIKQGF KGL+MGSMGM+YV WAFQAW G+YLVTEKGEKGGSIFVAG++I+MGGLSVLG
Sbjct: 211 LGIKQGFAKGLMMGSMGMVYVSWAFQAWAGTYLVTEKGEKGGSIFVAGINIMMGGLSVLG 270
Query: 301 ALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDT 360
ALPNLT+ITEA VAATRIF+M++RTP+ID +DK GKALSY RGEI+F+D++F YPSRPDT
Sbjct: 271 ALPNLTSITEATVAATRIFQMIERTPSIDLEDKKGKALSYARGEIDFQDIHFSYPSRPDT 330
Query: 361 LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLR 420
+L+GLNLR+PAGK+VGLVGGSGSGKST I+LLQRFY+P EG++LLDG+KI RL LKW R
Sbjct: 331 PILRGLNLRIPAGKTVGLVGGSGSGKSTVISLLQRFYEPNEGQILLDGHKINRLQLKWWR 390
Query: 421 SQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQL 480
SQMGLVNQEPVLFATSI ENILFGK+GA MDDVI+AAK ANAHDFITKL DGYETQVGQ
Sbjct: 391 SQMGLVNQEPVLFATSIKENILFGKEGALMDDVINAAKDANAHDFITKLTDGYETQVGQF 450
Query: 481 GFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAH 540
GFQ+SGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQ+AID+ SKGRTT+ IAH
Sbjct: 451 GFQLSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQDAIDQASKGRTTITIAH 510
Query: 541 RLSTIRTANLIMVLKAGKVVESGSHNELM--NRGEGGEYYQMVELQQMASENDTSNDTFN 598
RLSTIRTANLI+VL++G+V+ESGSH++LM N G GGEY++MV+LQQMA++ + FN
Sbjct: 511 RLSTIRTANLIVVLQSGRVIESGSHDQLMQINNGRGGEYFRMVQLQQMAAQKEN----FN 566
Query: 599 DFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDPDDDSLG 658
DF ++ D N ++ SPA
Sbjct: 567 DFIYRNDGKNSFR----------------------MSPA--------------------- 583
Query: 659 DRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDK 718
PS WRLLK+N PEWG L GC+A+IG+GAVQPINAYC GSL+S YFR+DK
Sbjct: 584 ----------PSPWRLLKMNAPEWGRGLTGCLAAIGAGAVQPINAYCAGSLMSNYFRSDK 633
Query: 719 SEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFD 778
S IK KS L+L FL + LNFI+SLLQHY+F++MGE+LTKRVREKLL KLMTFEIGWFD
Sbjct: 634 SAIKHKSNVLALIFLFIGALNFITSLLQHYNFAIMGERLTKRVREKLLAKLMTFEIGWFD 693
Query: 779 QEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQ 838
++NTSAAICARLATEA++VRSLVGDRMSLLVQ FGSVF+Y +GLVL+WRLTLVMIAVQ
Sbjct: 694 DDENTSAAICARLATEASMVRSLVGDRMSLLVQTFFGSVFAYSIGLVLTWRLTLVMIAVQ 753
Query: 839 PLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLR 898
PLVIGS+Y R+VLMKSMAGKA+KAQ EGSQLASEAVINHRTI AFSS+KR+L LFK TLR
Sbjct: 754 PLVIGSFYLRSVLMKSMAGKAQKAQMEGSQLASEAVINHRTIAAFSSEKRMLELFKATLR 813
Query: 899 GPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTA 958
GPKEES+KHSW SG+GLF SQFFNTA L YWYGGRLLT+ LIT E LFQAFLILLFTA
Sbjct: 814 GPKEESVKHSWLSGLGLFCSQFFNTAFITLTYWYGGRLLTEGLITSERLFQAFLILLFTA 873
Query: 959 YVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQG-RDIKRQMRGRIELKNVFFA 1017
YVIAEAGSMT+DISKG NA+R++FAILDR+SEIDP++ G +I+R++ G++E NV+FA
Sbjct: 874 YVIAEAGSMTNDISKGGNAIRTIFAILDRKSEIDPNNSFGASNIRRKLNGQVEFNNVYFA 933
Query: 1018 YPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRN 1077
YPTRPDQMI KGL+LKI+AGKTVALVG SG GKSTIIGL+ERFYDPLKG+VF+D QDI+
Sbjct: 934 YPTRPDQMIFKGLNLKIDAGKTVALVGPSGSGKSTIIGLIERFYDPLKGAVFIDRQDIKR 993
Query: 1078 YNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGY 1137
YNL+ LRSHIALVSQEPTLFAGTIRENIAYGK +ARESEI+KAAV+ANAHEFISGMKDGY
Sbjct: 994 YNLRMLRSHIALVSQEPTLFAGTIRENIAYGKENARESEIRKAAVVANAHEFISGMKDGY 1053
Query: 1138 DTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGR 1197
DTYCGERGVQLSGGQKQRIALARAILK+PSILLLDEATSALDSVSESLVQEALE MM+GR
Sbjct: 1054 DTYCGERGVQLSGGQKQRIALARAILKDPSILLLDEATSALDSVSESLVQEALENMMVGR 1113
Query: 1198 TCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGGSSPFR 1255
TCVV+AHRLSTIQKS++IAVIKNG+VVEQGSH EL+AL G YYSL K Q GSS ++
Sbjct: 1114 TCVVIAHRLSTIQKSNSIAVIKNGKVVEQGSHKELIALGSSGEYYSLTKLQSGSSSYQ 1171
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473162|ref|XP_002282137.2| PREDICTED: ABC transporter B family member 15-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1730 bits (4480), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 858/1257 (68%), Positives = 1051/1257 (83%), Gaps = 14/1257 (1%)
Query: 1 MGGNDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTV 60
MG G+FRYA+G D LLML GT+GSIGDG+ PL + VLS VIN YG+ S S V
Sbjct: 1 MGRKGGMFRYANGIDMLLMLLGTLGSIGDGLMSPLTMLVLSDVINKYGD-VDPSFSIQVV 59
Query: 61 DKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSS 120
DK++L L VAIGVG+SAF+EG+CWTRT+ERQTSRMRMEYLKSVLRQEVGFFD Q SS
Sbjct: 60 DKHSLWLFCVAIGVGISAFIEGICWTRTSERQTSRMRMEYLKSVLRQEVGFFDKQA-ASS 118
Query: 121 TTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFI 180
TTFQV+STIS+D++SIQ I EKI N LA+LS+F FCL+ +F LSWRL++AALP +LMFI
Sbjct: 119 TTFQVISTISSDAHSIQDVISEKIPNCLAHLSSFIFCLIVAFFLSWRLAVAALPFSLMFI 178
Query: 181 VPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTME 240
+PG+ FGKLMM + MKM +YGVAG IAEQA+SS+RTVYSY E +TL RFS+ALQK+M+
Sbjct: 179 IPGVGFGKLMMNLGMKMKVAYGVAGEIAEQAISSVRTVYSYAGECQTLDRFSHALQKSMK 238
Query: 241 LGIKQGFIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLG 300
LGIK GF KGLL+GSMG IY WAFQAWVG+ LVTEKGE GGS+F++GV +I+GGLS++
Sbjct: 239 LGIKLGFTKGLLIGSMGTIYAAWAFQAWVGTILVTEKGEGGGSVFISGVCVILGGLSIMN 298
Query: 301 ALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDT 360
ALPNL+ I EA AATRIFE+ DR P ID++++ GK L+YVRGEIEF++V F YPSRP T
Sbjct: 299 ALPNLSFILEATAAATRIFEITDRIPEIDSENEKGKILAYVRGEIEFKEVEFSYPSRPTT 358
Query: 361 LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLR 420
+LQG NL+V AGK+VGLVGGSGSGKST I+LL+RFYDPV+G +LLDG+KI+RL LKWLR
Sbjct: 359 KILQGFNLKVKAGKTVGLVGGSGSGKSTIISLLERFYDPVKGNILLDGHKIKRLQLKWLR 418
Query: 421 SQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQL 480
SQ+GLVNQEPVLFATSI ENILFGK+GA ++ V+ AAKAANAH FI+KLP GYETQVGQ
Sbjct: 419 SQIGLVNQEPVLFATSIKENILFGKEGAPLELVVRAAKAANAHGFISKLPQGYETQVGQF 478
Query: 481 GFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAH 540
G Q+SGGQKQRIAIARALIRDP+ILLLDEATSALDA+SERIVQEA+D+ S GRTT++IAH
Sbjct: 479 GIQLSGGQKQRIAIARALIRDPRILLLDEATSALDAESERIVQEALDQASLGRTTIMIAH 538
Query: 541 RLSTIRTANLIMVLKAGKVVESGSHNEL--MNRGEGGEYYQMVELQQMASENDTSNDTFN 598
RLSTI A++I+VL++G+VVESGSHN+L MN G+GG Y +M++LQQ A ++++S
Sbjct: 539 RLSTIHKADIIVVLQSGRVVESGSHNDLIQMNNGQGGAYSRMLQLQQSAMQSNSS----- 593
Query: 599 DFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDPDDDSLG 658
F D + + A +P+S+ SS S+PA FSPA S+ S IQ D+S
Sbjct: 594 -FYRPADGTSHSRTMSAQTPVSVTSSLPSSPAF-LFSPAFSISMAPS--IQLHSYDESDS 649
Query: 659 DRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDK 718
+ +++SSY P QWRL+K+N+PEW L+GCI + GA+QP +AYC+G+++S+YF D
Sbjct: 650 ENLEKSSYP-PWQWRLVKMNLPEWKRGLIGCIGAAVFGAIQPTHAYCLGTVVSVYFLKDD 708
Query: 719 SEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFD 778
S IKS+++ FLG+AVL+FI++LLQHY+F++MGE+L KRVREK+LGK++TFEIGWFD
Sbjct: 709 SSIKSQTKFYCFIFLGLAVLSFIANLLQHYNFAIMGERLIKRVREKMLGKVLTFEIGWFD 768
Query: 779 QEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQ 838
Q++NTSAAICARLATEAN+VRSL+GDR+SLLVQ F + +++VGL+++WRL +VMIA+Q
Sbjct: 769 QDENTSAAICARLATEANMVRSLIGDRISLLVQVFFSASLAFMVGLIVTWRLAIVMIAMQ 828
Query: 839 PLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLR 898
PL+IGS+YS++VLMKSM+ KA KAQ EGSQLASEA +NHRTITAFSSQ+RILGLF T+
Sbjct: 829 PLLIGSFYSKSVLMKSMSEKALKAQNEGSQLASEAAVNHRTITAFSSQQRILGLFGATME 888
Query: 899 GPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTA 958
GPK+E++K SW SG GLFSSQF TAS AL YWYGGRL+ LITP+HLFQAF IL+ T
Sbjct: 889 GPKKENIKQSWISGFGLFSSQFLTTASIALTYWYGGRLMIHGLITPKHLFQAFFILMSTG 948
Query: 959 YVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAY 1018
IA+AGSMTSD++KGS A+RSVFAILDR+S+I+P+ P+ + + ++G IELKNVFF+Y
Sbjct: 949 KNIADAGSMTSDLAKGSRAMRSVFAILDRQSKIEPEDPERIMVNKAIKGCIELKNVFFSY 1008
Query: 1019 PTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNY 1078
PTRPDQMI KGLSL+IEAGKT ALVG+SG GKST+IGL+ERFYDPL GSV +D+ DIR+Y
Sbjct: 1009 PTRPDQMIFKGLSLRIEAGKTAALVGESGSGKSTVIGLIERFYDPLNGSVQIDQHDIRSY 1068
Query: 1079 NLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYD 1138
NL++LRSHIALVSQEP LFAGTI ENI YGK +A E+EI++AA+LANAHEFIS MKDGY
Sbjct: 1069 NLRKLRSHIALVSQEPILFAGTIYENIVYGKENATEAEIRRAALLANAHEFISSMKDGYK 1128
Query: 1139 TYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRT 1198
TYCGERGVQLSGGQKQRIALARAILKNP+I+LLDEATSALDS+SE+LVQEALEKMM+GRT
Sbjct: 1129 TYCGERGVQLSGGQKQRIALARAILKNPAIILLDEATSALDSMSENLVQEALEKMMVGRT 1188
Query: 1199 CVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGGSSPFR 1255
CVVVAHRLSTIQKSDTIAVIKNG+VVEQGSH++L+A+ GG YYSLIK QG SP+R
Sbjct: 1189 CVVVAHRLSTIQKSDTIAVIKNGKVVEQGSHSDLLAVGHGGTYYSLIKLQGNHSPYR 1245
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147867379|emb|CAN81180.1| hypothetical protein VITISV_012787 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1729 bits (4477), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 859/1257 (68%), Positives = 1051/1257 (83%), Gaps = 14/1257 (1%)
Query: 1 MGGNDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTV 60
MG G+FRYA+G D LLML GT+GSIGDG+ PL + VLS VIN+YG+ S S V
Sbjct: 1 MGRKGGMFRYANGIDMLLMLLGTLGSIGDGLMSPLTMLVLSDVINEYGD-VDPSFSIQVV 59
Query: 61 DKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSS 120
DK++L L VAIGVG+SAF+EG+CWTRT+ERQTSRMRMEYLKSVLRQEVGFFD Q SS
Sbjct: 60 DKHSLWLFCVAIGVGISAFIEGICWTRTSERQTSRMRMEYLKSVLRQEVGFFDKQA-ASS 118
Query: 121 TTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFI 180
TTFQV+STIS+D++SIQ I EKI N LA+LS+F FCL+ +F LSWRL++AALP +LMFI
Sbjct: 119 TTFQVISTISSDAHSIQDVISEKIPNCLAHLSSFIFCLIVAFFLSWRLAVAALPFSLMFI 178
Query: 181 VPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTME 240
+PG+ FGKLMM + MKM +YGVAG IAEQA+SS+RTVYSY E +TL RFS+ALQK+M
Sbjct: 179 IPGVGFGKLMMNLGMKMKVAYGVAGEIAEQAISSVRTVYSYAGECQTLDRFSHALQKSMT 238
Query: 241 LGIKQGFIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLG 300
LGIK GF KGLL+GSMG IY WAFQAWVG+ LVTEKGE GGS+F++GV +I+GGLS++
Sbjct: 239 LGIKLGFTKGLLIGSMGTIYAAWAFQAWVGTILVTEKGEGGGSVFISGVCVILGGLSIMN 298
Query: 301 ALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDT 360
ALPNL+ I EA AATRIFE+ DR P ID++++ GK L+YVRGEIEF++V F YPSRP T
Sbjct: 299 ALPNLSFILEATXAATRIFEITDRIPEIDSENEKGKILAYVRGEIEFKEVEFSYPSRPTT 358
Query: 361 LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLR 420
+LQG NL+V AGK+VGLVGGSGSGKST I+LL+RFYDPV+G +LLDG+KI+RL LKWLR
Sbjct: 359 KILQGFNLKVKAGKTVGLVGGSGSGKSTIISLLERFYDPVKGNILLDGHKIKRLQLKWLR 418
Query: 421 SQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQL 480
SQ+GLVNQEPVLFATSI ENILFGK+GA ++ V+ AAKAANAH FI+KLP GYETQVGQ
Sbjct: 419 SQIGLVNQEPVLFATSIKENILFGKEGAPLELVVRAAKAANAHGFISKLPQGYETQVGQF 478
Query: 481 GFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAH 540
G Q+SGGQKQRIAIARALIRDP+ILLLDEATSALDA+SERIVQEA+D+ S GRTT++IAH
Sbjct: 479 GIQLSGGQKQRIAIARALIRDPRILLLDEATSALDAESERIVQEALDQASLGRTTIMIAH 538
Query: 541 RLSTIRTANLIMVLKAGKVVESGSHNEL--MNRGEGGEYYQMVELQQMASENDTSNDTFN 598
RLSTI A++I+VL++G+VVESGSHN+L MN G+GG Y +M++LQQ A ++++S
Sbjct: 539 RLSTIHKADIIVVLQSGRVVESGSHNDLIQMNNGQGGAYSRMLQLQQSAMQSNSS----- 593
Query: 599 DFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDPDDDSLG 658
F D + + A +P+S+ SS S+PA FSPA S+ S IQ D+S
Sbjct: 594 -FYRPADGTSHSRTMSAQTPVSVTSSLPSSPAF-LFSPAFSISMAPS--IQLHSYDESDS 649
Query: 659 DRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDK 718
+ +++SSY P QWRL+K+N+PEW LLGCI + GA+QP +AYC+G+++S+YF D
Sbjct: 650 ENLEKSSYP-PWQWRLVKMNLPEWKRGLLGCIGAAVFGAIQPTHAYCLGTVVSVYFLKDD 708
Query: 719 SEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFD 778
S IKS+++ FLG+AVL+FI++LLQHY+F++MGE+L KRVREK+LGK++TFEIGWFD
Sbjct: 709 SSIKSQTKFYCFIFLGLAVLSFIANLLQHYNFAIMGERLIKRVREKMLGKVLTFEIGWFD 768
Query: 779 QEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQ 838
Q++NTSAAICARLATEAN+VRSL+GDR+SLLVQ F + +++VGL+++WRL +VMIA+Q
Sbjct: 769 QDENTSAAICARLATEANMVRSLIGDRISLLVQVFFSASLAFMVGLIVTWRLAIVMIAMQ 828
Query: 839 PLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLR 898
PL+IGS+YS++VLMKSM+ KA KAQ EGSQLASEA +NHRTITAFSSQ+RILGLF T+
Sbjct: 829 PLLIGSFYSKSVLMKSMSEKALKAQNEGSQLASEAAVNHRTITAFSSQQRILGLFGATME 888
Query: 899 GPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTA 958
GPK+E++K SW SG GLFSSQF TAS AL YWYGGRL+ LITP+HLFQAF IL+ T
Sbjct: 889 GPKKENIKQSWXSGFGLFSSQFLTTASIALTYWYGGRLMIHGLITPKHLFQAFFILMSTG 948
Query: 959 YVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAY 1018
IA+AGSMTSD++KGS A+RSVFAILDR+S+I+P+ P+ + + ++G IELKNVFF+Y
Sbjct: 949 KNIADAGSMTSDLAKGSRAMRSVFAILDRQSKIEPEDPERIMVNKAIKGCIELKNVFFSY 1008
Query: 1019 PTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNY 1078
PTRPDQMI KGLSL+IEAGKT ALVG+SG GKST+IGL+ERFYDPL GSV +D+ DIR+Y
Sbjct: 1009 PTRPDQMIFKGLSLRIEAGKTAALVGESGSGKSTVIGLIERFYDPLNGSVQIDQHDIRSY 1068
Query: 1079 NLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYD 1138
NL++LRSHIALVSQEP LFAGTI ENI YGK +A E+EI++AA+LANAHEFIS MKDGY
Sbjct: 1069 NLRKLRSHIALVSQEPILFAGTIYENIVYGKENATEAEIRRAALLANAHEFISSMKDGYK 1128
Query: 1139 TYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRT 1198
TYCGERGVQLSGGQKQRIALARAILKNP+I+LLDEATSALDS+SE+LVQEALEKMM+GRT
Sbjct: 1129 TYCGERGVQLSGGQKQRIALARAILKNPAIILLDEATSALDSMSENLVQEALEKMMVGRT 1188
Query: 1199 CVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGGSSPFR 1255
CVVVAHRLSTIQKSDTIAVIKNG+VVEQGSH++L+A+ GG YYSLIK QG SP+R
Sbjct: 1189 CVVVAHRLSTIQKSDTIAVIKNGKVVEQGSHSDLLAVGHGGTYYSLIKLQGNHSPYR 1245
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1255 | ||||||
| UNIPROTKB|Q6YUU5 | 1245 | LOC_Os02g09720 "Putative multi | 0.475 | 0.479 | 0.591 | 0.0 | |
| TAIR|locus:2088897 | 1240 | ABCB15 "ATP-binding cassette B | 0.461 | 0.466 | 0.585 | 0.0 | |
| TAIR|locus:2088942 | 1225 | ABCB18 "ATP-binding cassette B | 0.461 | 0.472 | 0.573 | 0.0 | |
| TAIR|locus:504955759 | 1229 | ABCB22 "ATP-binding cassette B | 0.461 | 0.471 | 0.568 | 0.0 | |
| TAIR|locus:2088912 | 1228 | ABCB16 "ATP-binding cassette B | 0.470 | 0.481 | 0.564 | 0.0 | |
| TAIR|locus:2088927 | 1240 | ABCB17 "ATP-binding cassette B | 0.458 | 0.463 | 0.555 | 0.0 | |
| UNIPROTKB|Q8GU81 | 1234 | mdr17 "Uncharacterized protein | 0.470 | 0.478 | 0.479 | 5.4e-292 | |
| UNIPROTKB|Q0JCP1 | 1259 | Os04g0459000 "Os04g0459000 pro | 0.479 | 0.478 | 0.458 | 1.1e-271 | |
| TAIR|locus:2090734 | 1252 | ABCB19 "ATP-binding cassette B | 0.479 | 0.480 | 0.462 | 1.5e-267 | |
| TAIR|locus:2057961 | 1286 | ABCB1 "ATP-binding cassette B1 | 0.978 | 0.954 | 0.421 | 6.4e-257 |
| UNIPROTKB|Q6YUU5 LOC_Os02g09720 "Putative multidrug resistance protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1832 (650.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 356/602 (59%), Positives = 474/602 (78%)
Query: 651 DPDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLI 710
D DD D ++ PS RLL +N PEW AL+G +++ G +QP AY +GS+I
Sbjct: 643 DARDD---DNTEKPKLPVPSFRRLLMLNAPEWKQALMGSFSAVVFGGIQPAYAYAMGSMI 699
Query: 711 SIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLM 770
S+YF TD +EIK K+RT +L F+G+AVL+F+ ++ QHY+F MGE LTKR+RE++L K++
Sbjct: 700 SVYFLTDHAEIKDKTRTYALIFVGLAVLSFLINIGQHYNFGAMGEYLTKRIREQMLAKIL 759
Query: 771 TFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRL 830
TFEIGWFD+++N+S AIC++LA +ANVVRSLVGDRM+L++Q I + + +GLV++WRL
Sbjct: 760 TFEIGWFDRDENSSGAICSQLAKDANVVRSLVGDRMALVIQTISAVLIACTMGLVIAWRL 819
Query: 831 TLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRIL 890
LVMIAVQPL+I +Y+R VL+KSM+ K+ AQ E S+LA+EAV N RTITAFSSQ+RIL
Sbjct: 820 ALVMIAVQPLIIVCFYARRVLLKSMSKKSIHAQAESSKLAAEAVSNLRTITAFSSQERIL 879
Query: 891 GLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQA 950
LF+++ GP++ES++ SW++G+GL +S T + AL +WYGGRL+ + I+ + LFQ
Sbjct: 880 RLFEQSQDGPRKESIRQSWFAGLGLGTSMSLMTCTWALDFWYGGRLMAEHHISAKELFQT 939
Query: 951 FLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIE 1010
F+IL+ T VIA+AGSMT+D++KG++AV SVFA+LDR +EIDPD+PQG ++ ++G ++
Sbjct: 940 FMILVSTGRVIADAGSMTTDLAKGADAVASVFAVLDRETEIDPDNPQGYKPEK-LKGEVD 998
Query: 1011 LKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFM 1070
++ V FAYP+RPD +I KG +L I+ GK+ ALVGQSG GKSTIIGL+ERFYDP++GSV +
Sbjct: 999 IRGVDFAYPSRPDVIIFKGFTLSIQPGKSTALVGQSGSGKSTIIGLIERFYDPIRGSVKI 1058
Query: 1071 DEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFI 1130
D +DI+ YNL+ LR HI LVSQEPTLFAGTIRENI YG A E+EI+ AA ANAH+FI
Sbjct: 1059 DGRDIKAYNLRALRRHIGLVSQEPTLFAGTIRENIVYGTETASEAEIEDAARSANAHDFI 1118
Query: 1131 SGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEAL 1190
S +KDGYDT+CGERGVQLSGGQKQRIA+ARAILKNP+ILLLDEATSALDS SE +VQEAL
Sbjct: 1119 SNLKDGYDTWCGERGVQLSGGQKQRIAIARAILKNPAILLLDEATSALDSQSEKVVQEAL 1178
Query: 1191 EKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIK-PQG 1249
+++M+GRT VVVAHRLSTIQ D I V++ G VVE+G+H L+A G Y+SL+ QG
Sbjct: 1179 DRVMIGRTSVVVAHRLSTIQNCDLITVLEKGTVVEKGTHASLMAKGLSGTYFSLVNLQQG 1238
Query: 1250 GS 1251
G+
Sbjct: 1239 GN 1240
|
|
| TAIR|locus:2088897 ABCB15 "ATP-binding cassette B15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1771 (628.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 341/582 (58%), Positives = 458/582 (78%)
Query: 669 PSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTL 728
PS RLL +N+PEW AL GCI++ GA+QP AY +GS++S+YF T EIK K+R
Sbjct: 656 PSFKRLLAMNLPEWKQALYGCISATLFGAIQPAYAYSLGSMVSVYFLTSHDEIKEKTRIY 715
Query: 729 SLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAIC 788
+L F+G+AVL+F+ ++ QHY+F+ MGE LTKR+RE++L K++TFE+GWFD+++N+S AIC
Sbjct: 716 ALSFVGLAVLSFLINISQHYNFAYMGEYLTKRIRERMLSKVLTFEVGWFDRDENSSGAIC 775
Query: 789 ARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSR 848
+RLA +ANVVRSLVGDRM+L+VQ + ++ +GLV++WRL LVMIAVQP++I +Y+R
Sbjct: 776 SRLAKDANVVRSLVGDRMALVVQTVSAVTIAFTMGLVIAWRLALVMIAVQPVIIVCFYTR 835
Query: 849 NVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHS 908
VL+KSM+ KA KAQ E S+LA+EAV N RTITAFSSQ+RI+ + ++ P+ ES++ S
Sbjct: 836 RVLLKSMSKKAIKAQDESSKLAAEAVSNVRTITAFSSQERIMKMLEKAQESPRRESIRQS 895
Query: 909 WYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMT 968
W++G GL SQ + + AL +WYGGRL+ IT + LF+ F+IL+ T VIA+AGSMT
Sbjct: 896 WFAGFGLAMSQSLTSCTWALDFWYGGRLIQDGYITAKALFETFMILVSTGRVIADAGSMT 955
Query: 969 SDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILK 1028
+D++KGS+AV SVFA+LDR + IDP+ P G + +R + G++E +V F+YPTRPD +I K
Sbjct: 956 TDLAKGSDAVGSVFAVLDRYTSIDPEDPDGYETER-ITGQVEFLDVDFSYPTRPDVIIFK 1014
Query: 1029 GLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088
S+KIE GK+ A+VG SG GKSTIIGL+ERFYDPLKG V +D +DIR+Y+L+ LR HIA
Sbjct: 1015 NFSIKIEEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRRHIA 1074
Query: 1089 LVSQEPTLFAGTIRENIAYGKADAR--ESEIKKAAVLANAHEFISGMKDGYDTYCGERGV 1146
LVSQEPTLFAGTIRENI YG + E+EI +AA ANAH+FI+ + +GYDTYCG+RGV
Sbjct: 1075 LVSQEPTLFAGTIRENIIYGGVSDKIDEAEIIEAAKAANAHDFITSLTEGYDTYCGDRGV 1134
Query: 1147 QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRL 1206
QLSGGQKQRIA+ARA+LKNPS+LLLDEATSALDS SE +VQ+ALE++M+GRT VV+AHRL
Sbjct: 1135 QLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSQSERVVQDALERVMVGRTSVVIAHRL 1194
Query: 1207 STIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
STIQ D IAV+ G++VE+G+H+ L++ G Y+SL+ Q
Sbjct: 1195 STIQNCDAIAVLDKGKLVERGTHSSLLSKGPTGIYFSLVSLQ 1236
|
|
| TAIR|locus:2088942 ABCB18 "ATP-binding cassette B18" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1706 (605.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 334/582 (57%), Positives = 444/582 (76%)
Query: 669 PSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTL 728
PS RL+ +N PEW AL GC+ + GAVQPI +Y GS++S+YF +IK K+R
Sbjct: 641 PSFKRLMSMNRPEWKHALYGCLGAALFGAVQPIYSYSSGSMVSVYFLASHDQIKEKTRIY 700
Query: 729 SLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAIC 788
L F+G+A+ F+S++ QHY F+ MGE LTKR+RE++LGK++TFE+ WFD+++N+S AIC
Sbjct: 701 VLLFVGLALFTFLSNISQHYGFAYMGEYLTKRIRERMLGKILTFEVNWFDKDENSSGAIC 760
Query: 789 ARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSR 848
+RLA +AN+VRSLVGDRMSLLVQ I + +GLV+SWR ++VM++VQP+++ +Y++
Sbjct: 761 SRLAKDANMVRSLVGDRMSLLVQTISAVSITCAIGLVISWRFSIVMMSVQPVIVVCFYTQ 820
Query: 849 NVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHS 908
VL+KSM+ A K Q E S+LA+EAV N RTITAFSSQ+RI+ L K GP+++S + S
Sbjct: 821 RVLLKSMSRNAIKGQDESSKLAAEAVSNIRTITAFSSQERIINLLKMVQEGPRKDSARQS 880
Query: 909 WYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMT 968
W +GI L +SQ T +AL +WYGG+L+ + + + FLI T VIAEAG+MT
Sbjct: 881 WLAGIMLGTSQSLITCVSALNFWYGGKLIADGKMMSKEFLEIFLIFASTGRVIAEAGTMT 940
Query: 969 SDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILK 1028
D+ KGS+AV SVFA+LDR + I+P++P G + ++++G+I NV FAYPTRPD +I +
Sbjct: 941 KDLVKGSDAVASVFAVLDRNTTIEPENPDGY-VPKKVKGQISFSNVDFAYPTRPDVIIFQ 999
Query: 1029 GLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088
S+ IE GK+ A+VG SG GKSTII L+ERFYDPLKG V +D +DIR+ +L+ LR HIA
Sbjct: 1000 NFSIDIEDGKSTAIVGPSGSGKSTIISLIERFYDPLKGIVKIDGRDIRSCHLRSLRQHIA 1059
Query: 1089 LVSQEPTLFAGTIRENIAYGKADAR--ESEIKKAAVLANAHEFISGMKDGYDTYCGERGV 1146
LVSQEPTLFAGTIRENI YG A + ESEI +AA ANAH+FI+ + +GYDT CG+RGV
Sbjct: 1060 LVSQEPTLFAGTIRENIMYGGASNKIDESEIIEAAKAANAHDFITSLSNGYDTCCGDRGV 1119
Query: 1147 QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRL 1206
QLSGGQKQRIA+ARA+LKNPS+LLLDEATSALDS SES+VQ+ALE++M+GRT VV+AHRL
Sbjct: 1120 QLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSQSESVVQDALERLMVGRTSVVIAHRL 1179
Query: 1207 STIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
STIQK DTIAV++NG VVE G+H+ L+A GAY+SL+ Q
Sbjct: 1180 STIQKCDTIAVLENGAVVECGNHSSLLAKGPKGAYFSLVSLQ 1221
|
|
| TAIR|locus:504955759 ABCB22 "ATP-binding cassette B22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1698 (602.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 331/582 (56%), Positives = 445/582 (76%)
Query: 669 PSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTL 728
PS RL+ +N PEW AL GC++++ GA+ PI AY GS++S+YF T E+K K+R
Sbjct: 645 PSFKRLMAMNKPEWKHALYGCLSAVLYGALHPIYAYASGSMVSVYFLTSHDEMKEKTRIY 704
Query: 729 SLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAIC 788
L F+G+AVL F+ S++Q YSF+ MGE LTKR+RE +L KL+TFE+ WFD+++N+S +IC
Sbjct: 705 VLLFVGLAVLCFLISIIQQYSFAYMGEYLTKRIRENILSKLLTFEVSWFDEDENSSGSIC 764
Query: 789 ARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSR 848
+RLA +ANVVRSLVG+R+SLLVQ I + +GL +SW+L++VMIA+QP+V+G +Y++
Sbjct: 765 SRLAKDANVVRSLVGERVSLLVQTISAVSVACTLGLAISWKLSIVMIAIQPVVVGCFYTQ 824
Query: 849 NVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHS 908
+++KS++ KA KAQ E S+LA+EAV N RTITAFSSQ+RIL L K GP+ E+++ S
Sbjct: 825 RIVLKSISKKAIKAQDESSKLAAEAVSNIRTITAFSSQERILKLLKMVQEGPQRENIRQS 884
Query: 909 WYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMT 968
W +GI L +S+ T ++AL YWYG RL+ IT + F+ F++ + T VIA+AG+MT
Sbjct: 885 WLAGIVLATSRSLMTCTSALNYWYGARLIIDGKITSKAFFELFILFVSTGRVIADAGAMT 944
Query: 969 SDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILK 1028
D++KGS+AV SVFA+LDR + I+P+ P G + + ++G+I+ NV FAYPTRPD +I K
Sbjct: 945 MDLAKGSDAVGSVFAVLDRYTNIEPEKPDGF-VPQNIKGQIKFVNVDFAYPTRPDVIIFK 1003
Query: 1029 GLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088
S+ I+ GK+ A+VG SG GKSTIIGL+ERFYDPLKG V +D +DIR+Y+L+ LR HI
Sbjct: 1004 NFSIDIDEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRQHIG 1063
Query: 1089 LVSQEPTLFAGTIRENIAYGKADAR--ESEIKKAAVLANAHEFISGMKDGYDTYCGERGV 1146
LVSQEP LFAGTIRENI YG A + ESEI +AA ANAH+FI + DGYDTYCG+RGV
Sbjct: 1064 LVSQEPILFAGTIRENIMYGGASDKIDESEIIEAAKAANAHDFIVTLSDGYDTYCGDRGV 1123
Query: 1147 QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRL 1206
QLSGGQKQRIA+ARA+LKNPS+LLLDEATSALD+ SE +VQ+AL ++M+GRT VV+AHRL
Sbjct: 1124 QLSGGQKQRIAIARAVLKNPSVLLLDEATSALDNQSERMVQDALGRLMVGRTSVVIAHRL 1183
Query: 1207 STIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
STIQ DTI V+ G+VVE G+H+ L+A G Y+SL+ Q
Sbjct: 1184 STIQNCDTITVLDKGKVVECGTHSSLLAKGPTGVYFSLVSLQ 1225
|
|
| TAIR|locus:2088912 ABCB16 "ATP-binding cassette B16" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1681 (596.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 337/597 (56%), Positives = 445/597 (74%)
Query: 656 SLGDRIDQSSYA-TPSQWRLLKINMPEWGSALLGCI-ASIGSGAVQPINAYCVGSLISIY 713
+L D I Q PS RL+ +N PEW AL GC+ AS+G GAVQPI AY G +IS++
Sbjct: 628 NLSDSIPQDKKPLVPSFKRLMAMNRPEWKHALCGCLSASLG-GAVQPIYAYSSGLMISVF 686
Query: 714 FRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFE 773
F T+ +IK +R L F G+A+ F +S+ Q YSFS MGE LTKR+RE++L K++TFE
Sbjct: 687 FLTNHEQIKENTRIYVLLFFGLALFTFFTSISQQYSFSYMGEYLTKRIREQMLSKILTFE 746
Query: 774 IGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLV 833
+ WFD+E+N+S AIC+RLA +ANVVRSLVG+RMSLLVQ I + + +GLV++WR T+V
Sbjct: 747 VNWFDEEENSSGAICSRLAKDANVVRSLVGERMSLLVQTISTVMVACTIGLVIAWRFTIV 806
Query: 834 MIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLF 893
MI+VQP++I YY + VL+K+M+ KA AQ E S+LA+EAV N RTIT FSSQ+RI+ L
Sbjct: 807 MISVQPVIIVCYYIQRVLLKNMSKKAIIAQDESSKLAAEAVSNIRTITTFSSQERIMKLL 866
Query: 894 KETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLI 953
+ GP+ ES + SW +GI L ++Q T ++AL +WYGG+L+ + + F+ FLI
Sbjct: 867 ERVQEGPRRESARQSWLAGIMLGTTQSLITCTSALNFWYGGKLIADGKMVSKAFFELFLI 926
Query: 954 LLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKN 1013
T IAEAG+MT+D++KGSN+V SVF +LDRR+ I+P++P G I +++G+I N
Sbjct: 927 FKTTGRAIAEAGTMTTDLAKGSNSVDSVFTVLDRRTTIEPENPDGY-ILEKIKGQITFLN 985
Query: 1014 VFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQ 1073
V FAYPTRP+ +I S++I GK+ A+VG S GKST+IGL+ERFYDPL+G V +D +
Sbjct: 986 VDFAYPTRPNMVIFNNFSIEIHEGKSTAIVGPSRSGKSTVIGLIERFYDPLQGIVKIDGR 1045
Query: 1074 DIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADAR--ESEIKKAAVLANAHEFIS 1131
DIR+Y+L+ LR H++LVSQEPTLFAGTIRENI YG+A + ESEI +A ANAHEFI+
Sbjct: 1046 DIRSYHLRSLRQHMSLVSQEPTLFAGTIRENIMYGRASNKIDESEIIEAGKTANAHEFIT 1105
Query: 1132 GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALE 1191
+ DGYDTYCG+RGVQLSGGQKQRIA+AR ILKNPSILLLDEATSALDS SE +VQ+ALE
Sbjct: 1106 SLSDGYDTYCGDRGVQLSGGQKQRIAIARTILKNPSILLLDEATSALDSQSERVVQDALE 1165
Query: 1192 KMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
+M+G+T VV+AHRLSTIQ DTIAV+ G+VVE G+H L+A G+Y+SL+ Q
Sbjct: 1166 HVMVGKTSVVIAHRLSTIQNCDTIAVLDKGKVVESGTHASLLAKGPTGSYFSLVSLQ 1222
|
|
| TAIR|locus:2088927 ABCB17 "ATP-binding cassette B17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1669 (592.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 321/578 (55%), Positives = 443/578 (76%)
Query: 669 PSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTL 728
PS RL+ +N PEW AL GC+++ G +QP++AY GS+IS++F T +IK K+R
Sbjct: 656 PSFTRLMVMNRPEWKHALYGCLSAALVGVLQPVSAYSAGSVISVFFLTSHDQIKEKTRIY 715
Query: 729 SLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAIC 788
L F+G+A+ +F+ ++ QHY F+ MGE LTKR+RE++L K++TFE+ WFD +DN+S AIC
Sbjct: 716 VLLFVGLAIFSFLVNISQHYGFAYMGEYLTKRIREQMLSKILTFEVNWFDIDDNSSGAIC 775
Query: 789 ARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSR 848
+RLA +ANVVRS+VGDRMSLLVQ I + + I+GLV++WRL +VMI+VQPL++ +Y++
Sbjct: 776 SRLAKDANVVRSMVGDRMSLLVQTISAVIIACIIGLVIAWRLAIVMISVQPLIVVCFYTQ 835
Query: 849 NVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHS 908
VL+KS++ KA KAQ E S+LA+EAV N RTITAFSSQ+RI+ L K+ GP+ ES+ S
Sbjct: 836 RVLLKSLSEKASKAQDESSKLAAEAVSNIRTITAFSSQERIIKLLKKVQEGPRRESVHRS 895
Query: 909 WYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMT 968
W +GI L +S+ T ++AL +WYGGRL+ I + F+ FLI + T VIA+AG+MT
Sbjct: 896 WLAGIVLGTSRSLITCTSALNFWYGGRLIADGKIVSKAFFEIFLIFVTTGRVIADAGTMT 955
Query: 969 SDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILK 1028
+D+++G +AV SVFA+LDR + I+P +P G + +++G+I NV FAYPTRPD +I +
Sbjct: 956 TDLARGLDAVGSVFAVLDRCTTIEPKNPDGY-VAEKIKGQITFLNVDFAYPTRPDVVIFE 1014
Query: 1029 GLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088
S++I+ GK+ A+VG SG GKSTIIGL+ERFYDPLKG+V +D +DIR+Y+L+ LR +I+
Sbjct: 1015 NFSIEIDEGKSTAIVGTSGSGKSTIIGLIERFYDPLKGTVKIDGRDIRSYHLRSLRKYIS 1074
Query: 1089 LVSQEPTLFAGTIRENIAYGKADAR--ESEIKKAAVLANAHEFISGMKDGYDTYCGERGV 1146
LVSQEP LFAGTIRENI YG + ESEI +AA ANAH+FI+ + +GYDT CG++GV
Sbjct: 1075 LVSQEPMLFAGTIRENIMYGGTSDKIDESEIIEAAKAANAHDFITSLSNGYDTNCGDKGV 1134
Query: 1147 QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRL 1206
QLSGGQKQRIA+ARA+LKNPS+LLLDEATSALDS SE +VQ+ALE++M+GRT +++AHRL
Sbjct: 1135 QLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSKSERVVQDALERVMVGRTSIMIAHRL 1194
Query: 1207 STIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSL 1244
STIQ D I V+ G++VE G+H+ L+ G Y+SL
Sbjct: 1195 STIQNCDMIVVLGKGKIVESGTHSSLLEKGPTGTYFSL 1232
|
|
| UNIPROTKB|Q8GU81 mdr17 "Uncharacterized protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1448 (514.8 bits), Expect = 5.4e-292, Sum P(2) = 5.4e-292
Identities = 286/596 (47%), Positives = 423/596 (70%)
Query: 652 PDDDSLGDRIDQS-SYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLI 710
P + D S S PS RLL +N PEW A++G ++++ G++QPI A +G +I
Sbjct: 637 PLTPGISKETDSSVSPPAPSFSRLLAMNAPEWRQAVIGSLSALVYGSLQPIYAITIGGMI 696
Query: 711 SIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLM 770
+ +F D E+ + +L F ++V++ + +LLQHY+F+ MGE L +R+R ++L K++
Sbjct: 697 AAFFVQDLKEMNAIISRYALIFCSLSVISIVVNLLQHYNFAYMGEHLVRRIRVQVLEKIL 756
Query: 771 TFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRL 830
TFE WFD+E N+S ++C+RL+ EA++V++LV DR+SLL+Q G + + +GL+++W+L
Sbjct: 757 TFEAAWFDEETNSSGSLCSRLSNEASLVKTLVADRISLLLQTASGIIIAVTMGLIVAWKL 816
Query: 831 TLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRIL 890
LVMIAVQP + YY++ +++ +++ KAQ + +Q+A EAV NHR +T+F ++L
Sbjct: 817 ALVMIAVQPTTMICYYAKKIVLSNVSRDLAKAQHQSTQIAIEAVYNHRMVTSFGCSSKVL 876
Query: 891 GLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQA 950
LF+ T P + + K SW +GI S + S AL +WYGG+L I+ +F+
Sbjct: 877 QLFEHTQEEPLKRARKKSWVAGITTGLSPCLSFLSWALDFWYGGKLAQSGEISAGDVFKT 936
Query: 951 FLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQ-GRDI-KRQMRGR 1008
F +L+ T +IA+AGSMTSD++KG+NAV SVF +LDR+S I P + Q +D K +++GR
Sbjct: 937 FFVLVSTGKLIADAGSMTSDLAKGANAVASVFEVLDRKS-ISPQNSQVEKDNQKNKIQGR 995
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IE K V FAYPTRP +IL+ SL ++AG ++ LVG+SGCGKSTIIGL++RFYD +G+V
Sbjct: 996 IEFKRVDFAYPTRPQCLILQDFSLDVKAGTSIGLVGRSGCGKSTIIGLIQRFYDVDRGAV 1055
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHE 1128
+D D+R ++ R ALVSQEP +F+G++R+NIA+GK +A E EI +AA ANAHE
Sbjct: 1056 KVDGMDVREMDILWYRGFTALVSQEPAIFSGSVRDNIAFGKPEADEDEIVEAAKAANAHE 1115
Query: 1129 FISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQE 1188
FIS +KDGY T CGE G+QLSGGQKQRIA+ARAI++NP+ILLLDEATSALD+ SE +VQE
Sbjct: 1116 FISSLKDGYHTDCGEHGLQLSGGQKQRIAIARAIIRNPAILLLDEATSALDAQSEQVVQE 1175
Query: 1189 ALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSL 1244
AL+++M GRT +VVAHRL+TI+ D+IA + G+VVE+G++ L +S+ GA+Y+L
Sbjct: 1176 ALDRIMSGRTTIVVAHRLNTIKNVDSIAFLGEGKVVERGTYPHL--MSKKGAFYNL 1229
|
|
| UNIPROTKB|Q0JCP1 Os04g0459000 "Os04g0459000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1377 (489.8 bits), Expect = 1.1e-271, Sum P(2) = 1.1e-271
Identities = 279/608 (45%), Positives = 409/608 (67%)
Query: 644 YSYTIQYDPDDDSLGDRIDQSSYATPSQW--RLLKINMPEWGSALLGCIASIGSGAVQPI 701
YSY+ D + + + + Y P + +LLK+N PEW +LG I SI SG + P
Sbjct: 651 YSYSTGADGRIEMVSNADNDRKYPAPKGYFFKLLKLNAPEWPYTILGAIGSILSGFIGPT 710
Query: 702 NAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRV 761
A + ++I +++ D + ++ K+R ++G + ++ L+QHY FS+MGE LT RV
Sbjct: 711 FAIVMSNMIEVFYFRDPNAMERKTREYVFIYIGTGLYAVVAYLVQHYFFSIMGENLTTRV 770
Query: 762 REKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYI 821
R +L ++ ++GWFDQE+N S+ + ARL+T+A V+S + +R+S+++Q + + S++
Sbjct: 771 RRMMLAAILRNDVGWFDQEENNSSLVAARLSTDAADVKSAIAERISVILQNMTSLLVSFV 830
Query: 822 VGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTIT 881
VG ++ WR+ ++++ PL++ + +++ + MK AG KA + S +A E V N RT+
Sbjct: 831 VGFIIEWRVAVLILVTFPLLVLANFAQQLSMKGFAGDTAKAHAKTSMIAGEGVSNIRTVA 890
Query: 882 AFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFS-SQFFNTASTALAYWYGGRLLTQE 940
AF++Q ++L LF LR P+ SL+ S SG LF SQ AS AL WYG L+
Sbjct: 891 AFNAQDKVLSLFCTELRVPQMHSLRRSQISG-ALFGLSQLSLYASEALILWYGAHLVRHH 949
Query: 941 LITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRD 1000
+ T + + F++L+ TA +AE S+ +I +G ++RSVFAIL+ R+ IDPD P+
Sbjct: 950 VSTFSKVIKVFVVLVITANTVAETVSLAPEIVRGGESIRSVFAILNYRTRIDPDEPETEP 1009
Query: 1001 IKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERF 1060
++ +RG I+ ++V FAYP+RPD M+ K SL+I AG++ ALVG SG GKST+I L+ERF
Sbjct: 1010 VE-SVRGDIDFRHVDFAYPSRPDVMVFKDFSLRIRAGQSQALVGASGSGKSTVIALIERF 1068
Query: 1061 YDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKA 1120
YDPL G V +D +DIR N++ LR I LV QEP LFA +I ENIAYGK A E E+ +A
Sbjct: 1069 YDPLAGKVMIDGKDIRRLNVRSLRLKIGLVQQEPVLFATSIFENIAYGKDGATEEEVIEA 1128
Query: 1121 AVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS 1180
A +AN H F+S + +GY T GERGVQLSGGQKQRIA+ARA+LK+P++LLLDEATSALD+
Sbjct: 1129 AKVANMHGFVSALPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPAVLLLDEATSALDA 1188
Query: 1181 VSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGA 1240
SE ++QEALE++M GRT V+VAHRLSTI+ D+IAV+++GRVVEQGSH ELV+ GA
Sbjct: 1189 ESECVLQEALERIMKGRTAVLVAHRLSTIRGVDSIAVVQDGRVVEQGSHGELVSRP-DGA 1247
Query: 1241 YYSLIKPQ 1248
Y L++ Q
Sbjct: 1248 YSRLLQLQ 1255
|
|
| TAIR|locus:2090734 ABCB19 "ATP-binding cassette B19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1358 (483.1 bits), Expect = 1.5e-267, Sum P(2) = 1.5e-267
Identities = 281/608 (46%), Positives = 409/608 (67%)
Query: 644 YSYTIQYDPDDDSLGD-RIDQSSYATPSQ-WRLLKINMPEWGSALLGCIASIGSGAVQPI 701
YSY+ D + + + D+ + A + +RLLK+N PEW +++G + SI SG + P
Sbjct: 644 YSYSTGADGRIEMISNAETDRKTRAPENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPT 703
Query: 702 NAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRV 761
A + ++I +++ TD ++ K++ ++G + + L+QHY FS+MGE LT RV
Sbjct: 704 FAIVMSNMIEVFYYTDYDSMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRV 763
Query: 762 REKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYI 821
R +L ++ E+GWFD++++ S+ I ARLAT+A V+S + +R+S+++Q + + S+I
Sbjct: 764 RRMMLSAILRNEVGWFDEDEHNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFI 823
Query: 822 VGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTIT 881
V ++ WR++L+++ PL++ + +++ + +K AG KA + S +A E V N RT+
Sbjct: 824 VAFIVEWRVSLLILGTFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVA 883
Query: 882 AFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFS-SQFFNTASTALAYWYGGRLLTQE 940
AF++Q +IL LF LR P++ SL S SG LF SQ S AL WYG L+++
Sbjct: 884 AFNAQSKILSLFCHELRVPQKRSLYRSQTSGF-LFGLSQLALYGSEALILWYGAHLVSKG 942
Query: 941 LITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRD 1000
+ T + + F++L+ TA +AE S+ +I +G AV SVF++LDR++ IDPD
Sbjct: 943 VSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDADADP 1002
Query: 1001 IKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERF 1060
++ +RG IE ++V FAYP+RPD M+ + +L+I AG + ALVG SG GKS++I ++ERF
Sbjct: 1003 VET-IRGDIEFRHVDFAYPSRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERF 1061
Query: 1061 YDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKA 1120
YDPL G V +D +DIR NLK LR I LV QEP LFA TI +NIAYGK A ESE+ A
Sbjct: 1062 YDPLAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAATIFDNIAYGKDGATESEVIDA 1121
Query: 1121 AVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS 1180
A ANAH FISG+ +GY T GERGVQLSGGQKQRIA+ARA+LKNP++LLLDEATSALD+
Sbjct: 1122 ARAANAHGFISGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKNPTVLLLDEATSALDA 1181
Query: 1181 VSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGA 1240
SE ++QEALE++M GRT VVVAHRLSTI+ D I VI++GR+VEQGSH+ELV+ G A
Sbjct: 1182 ESECVLQEALERLMRGRTTVVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELVSRPEG-A 1240
Query: 1241 YYSLIKPQ 1248
Y L++ Q
Sbjct: 1241 YSRLLQLQ 1248
|
|
| TAIR|locus:2057961 ABCB1 "ATP-binding cassette B1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2473 (875.6 bits), Expect = 6.4e-257, P = 6.4e-257
Identities = 525/1246 (42%), Positives = 761/1246 (61%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSS-SLSNDTVDKYTL 65
LFR+ADG D +LM G++G+ G PL + + ++N +G+ S++ + V KY L
Sbjct: 32 LFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFGSNSNNVEKMMEEVLKYAL 91
Query: 66 RLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQV 125
L V + S++ E CW + ERQT++MR++YL++ L Q++ FFDT+ + T V
Sbjct: 92 YFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALNQDIQFFDTEVR----TSDV 147
Query: 126 VSTISNDSNSIQVAICEKISNTLAYXXXXXXXXXXXXXXXWRLSLAALPLTLMFIVPGLL 185
V I+ D+ +Q AI EK+ N + Y W+L+L L + + V G +
Sbjct: 148 VFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTLAVVPLIAVIGGI 207
Query: 186 FGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQ 245
+ + K ES AG I EQ V IR V ++V E +S+AL+ +LG K
Sbjct: 208 HTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAYSSALKIAQKLGYKT 267
Query: 246 GFIKGLLMGSMG-MIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPN 304
G KG+ +G+ +++ +A W G YLV GG ++++GGL++ + P+
Sbjct: 268 GLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFAVMIGGLALGQSAPS 327
Query: 305 LTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQ 364
+ A +AKVAA +IF ++D P I+ + + G L V G +E ++V F YPSRPD +L
Sbjct: 328 MAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNVDFSYPSRPDVKILN 387
Query: 365 GLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424
L VPA T ++L++RFYDP G+VLLDG ++ L L+WLR Q+G
Sbjct: 388 NFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLKLRWLRQQIG 447
Query: 425 LVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQM 484
LV+QEP LFATSI ENIL G+ A ++ AA+ ANAH FI KLPDG++TQVG+ G Q+
Sbjct: 448 LVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDTQVGERGLQL 507
Query: 485 SGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLST 544
SGGQKQRIAIARA++++P ILLLDEATSALD++SE++VQEA+D+ GRTTLIIAHRLST
Sbjct: 508 SGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLIIAHRLST 567
Query: 545 IRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQM 604
IR A+L+ VL+ G V E G+H+EL ++GE G Y +++++Q+ A E SN + +
Sbjct: 568 IRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHETAMSNARKSS-ARPS 626
Query: 605 DAINLYKRTIXXXXXXXXXXXXXXXXLNPFSPALSVGTPYSYTIQYDPDD--DSLGDRID 662
A N I +P+S LS + +++ D + +++
Sbjct: 627 SARNSVSSPIMTRNSSYGR--------SPYSRRLSDFSTSDFSLSIDASSYPNYRNEKLA 678
Query: 663 QSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIK 722
A S WRL K+N PEW ALLG + S+ G++ AY + +++S+Y+ D +
Sbjct: 679 FKDQAN-SFWRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVLSVYYNPDHEYMI 737
Query: 723 SKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDN 782
+ +G++ + + LQH + ++GE LTKRVREK+L ++ E+ WFDQE+N
Sbjct: 738 KQIDKYCYLLIGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLSAVLKNEMAWFDQEEN 797
Query: 783 TSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVI 842
SA I ARLA +AN VRS +GDR+S++VQ + + G VL WRL LV++AV P+V+
Sbjct: 798 ESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVV 857
Query: 843 GSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKE 902
+ + + M +G A +G+QLA EA+ N RT+ AF+S+ +I+ L+ L P +
Sbjct: 858 AATVLQKMFMTGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEAKIVRLYTANLEPPLK 917
Query: 903 ESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIA 962
+G G +QF AS AL WY L+ + + F++L+ +A A
Sbjct: 918 RCFWKGQIAGSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAA 977
Query: 963 EAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRP 1022
E ++ D KG A+RSVF +LDR++EI+PD P + ++RG +ELK++ F+YP+RP
Sbjct: 978 ETLTLAPDFIKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRGEVELKHIDFSYPSRP 1037
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ 1082
D I + LSL+ AGKT+ALVG SGCGKS++I L++RFY+P G V +D +DIR YNLK
Sbjct: 1038 DIQIFRDLSLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMIDGKDIRKYNLKA 1097
Query: 1083 LRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCG 1142
+R HIA+V QEP LF TI ENIAYG A E+EI +AA LA+AH+FIS + +GY TY G
Sbjct: 1098 IRKHIAIVPQEPCLFGTTIYENIAYGHECATEAEIIQAATLASAHKFISALPEGYKTYVG 1157
Query: 1143 ERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVV 1202
ERGVQLSGGQKQRIA+ARA+++ I+LLDEATSALD+ SE VQEAL++ GRT +VV
Sbjct: 1158 ERGVQLSGGQKQRIAIARALVRKAEIMLLDEATSALDAESERSVQEALDQACSGRTSIVV 1217
Query: 1203 AHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
AHRLSTI+ + IAVI +G+V EQGSH+ L+ G Y +I+ Q
Sbjct: 1218 AHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNHPDGIYARMIQLQ 1263
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P36619 | PMD1_SCHPO | No assigned EC number | 0.3532 | 0.9768 | 0.9001 | yes | no |
| Q00748 | MDR65_DROME | 3, ., 6, ., 3, ., 4, 4 | 0.3778 | 0.9250 | 0.8917 | yes | no |
| P21448 | MDR1_CRIGR | 3, ., 6, ., 3, ., 4, 4 | 0.3806 | 0.9665 | 0.9506 | yes | no |
| P08183 | MDR1_HUMAN | 3, ., 6, ., 3, ., 4, 4 | 0.3776 | 0.9665 | 0.9476 | yes | no |
| Q6YUU5 | MDR_ORYSJ | No assigned EC number | 0.5339 | 0.9633 | 0.9710 | yes | no |
| Q9LHD1 | AB15B_ARATH | No assigned EC number | 0.5331 | 0.9649 | 0.9766 | yes | no |
| P21447 | MDR1A_MOUSE | 3, ., 6, ., 3, ., 4, 4 | 0.3793 | 0.9665 | 0.9506 | yes | no |
| Q8T9W4 | ABCB3_DICDI | No assigned EC number | 0.3896 | 0.9561 | 0.8379 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1255 | |||
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-156 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-142 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-141 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-134 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-130 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-126 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-126 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-118 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-118 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-113 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-112 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-110 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-107 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-106 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-106 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-100 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-99 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-97 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-96 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-94 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-89 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-87 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-86 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-85 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-84 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-83 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-83 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-81 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 6e-81 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-80 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-77 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-76 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-73 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-72 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-71 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-70 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-70 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 6e-70 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 7e-70 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-69 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-68 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 8e-66 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 3e-65 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-63 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-63 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 9e-63 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-62 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 4e-62 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-62 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 5e-62 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 8e-62 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-61 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 5e-61 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-60 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 6e-60 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 8e-57 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-55 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 3e-54 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 8e-54 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-53 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-53 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 5e-53 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 7e-52 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-50 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-49 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-49 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-48 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-48 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-47 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-46 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-46 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-45 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-45 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 8e-45 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 7e-43 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 8e-43 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-42 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-42 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-42 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-42 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-42 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-42 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-41 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-41 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-41 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 7e-41 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-40 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-40 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-40 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-40 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-40 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-40 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-39 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-39 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-39 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-39 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 4e-39 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 5e-39 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 6e-39 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-38 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-38 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-38 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 5e-38 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 6e-38 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-37 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-37 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-37 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-37 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-37 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-37 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-36 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-36 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-36 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-36 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-36 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 9e-36 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-35 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-35 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-35 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-35 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-35 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 5e-35 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-35 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-35 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-34 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-34 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-34 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 6e-34 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 6e-34 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 7e-34 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 8e-34 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 8e-34 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-33 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-33 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-33 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-33 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 5e-33 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 7e-33 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 7e-33 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 8e-33 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 8e-33 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-32 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-32 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-32 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-32 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-32 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-32 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-32 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-32 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-32 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 5e-32 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-31 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-31 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-31 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-31 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-31 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-31 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-31 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-31 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 5e-31 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 5e-31 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-31 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 6e-31 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 8e-31 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 8e-31 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-31 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-30 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-30 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-30 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-30 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-30 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-30 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-30 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-30 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 3e-30 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-30 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 4e-30 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-30 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 6e-30 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-29 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-29 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 3e-29 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-29 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-29 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 4e-29 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-29 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 7e-29 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 8e-29 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 8e-29 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 8e-29 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 9e-29 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 9e-29 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-28 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-28 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-28 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-28 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-28 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-28 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-28 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-28 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-28 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 3e-28 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 3e-28 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-28 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-28 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-28 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 4e-28 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-28 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 5e-28 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-28 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-28 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 8e-28 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 8e-28 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 8e-28 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 8e-28 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-27 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-27 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-27 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-27 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-27 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-27 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-27 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-27 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-27 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-27 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 5e-27 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-27 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 5e-27 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 5e-27 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 6e-27 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 7e-27 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 7e-27 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 8e-27 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 8e-27 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 8e-27 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 9e-27 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 9e-27 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 9e-27 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-26 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-26 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-26 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-26 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-26 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-26 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-26 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-26 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-26 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 5e-26 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 5e-26 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-26 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 5e-26 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 6e-26 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 6e-26 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 6e-26 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 7e-26 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 7e-26 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 8e-26 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-25 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-25 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-25 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-25 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-25 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-25 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-25 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-25 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-25 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-25 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-25 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-25 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-25 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-25 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-25 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-25 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-25 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-25 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-25 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-25 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-25 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-25 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-25 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-25 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-25 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-25 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-25 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-25 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 7e-25 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 8e-25 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 8e-25 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 8e-25 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 9e-25 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-24 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-24 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-24 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-24 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-24 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-24 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-24 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-24 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-24 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-24 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 4e-24 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-24 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-24 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-24 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 5e-24 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 6e-24 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 8e-24 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-23 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-23 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-23 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-23 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-23 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-23 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-23 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-23 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-23 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-23 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-23 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-23 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-23 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-23 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-23 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-23 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-23 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-23 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 4e-23 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 4e-23 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 4e-23 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-23 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-23 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 6e-23 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 6e-23 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 6e-23 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 9e-23 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 9e-23 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-22 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-22 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-22 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-22 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-22 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-22 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-22 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-22 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-22 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-22 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-22 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-22 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-22 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-22 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-22 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-22 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-22 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-22 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-22 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-22 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 4e-22 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-22 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 5e-22 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 5e-22 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-22 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 5e-22 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 6e-22 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 6e-22 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 7e-22 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 7e-22 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 8e-22 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 9e-22 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-21 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-21 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-21 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-21 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-21 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-21 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-21 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-21 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-21 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-21 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-21 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-21 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-21 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-21 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-21 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-21 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-21 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-21 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-21 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-21 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-21 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 3e-21 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-21 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 5e-21 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 6e-21 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 6e-21 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 6e-21 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-21 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 6e-21 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 6e-21 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-21 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 8e-21 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 8e-21 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 8e-21 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 9e-21 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 9e-21 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-20 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-20 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-20 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-20 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-20 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-20 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-20 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-20 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-20 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-20 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 3e-20 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 4e-20 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-20 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 5e-20 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-20 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 5e-20 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-20 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 7e-20 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 7e-20 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 7e-20 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 7e-20 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 9e-20 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-19 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-19 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 1e-19 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-19 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-19 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-19 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-19 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-19 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-19 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-19 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-19 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-19 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-19 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-19 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-19 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 4e-19 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 4e-19 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-19 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-19 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-19 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-19 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-19 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 5e-19 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 5e-19 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 6e-19 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-19 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 6e-19 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 6e-19 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 8e-19 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 9e-19 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 9e-19 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-18 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-18 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-18 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-18 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-18 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 1e-18 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-18 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-18 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-18 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-18 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-18 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-18 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-18 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-18 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-18 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-18 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-18 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-18 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 4e-18 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-18 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-18 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-18 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 6e-18 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-18 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 6e-18 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 7e-18 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 8e-18 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 9e-18 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 9e-18 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-17 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-17 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-17 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-17 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-17 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-17 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-17 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-17 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-17 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-17 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-17 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-17 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-17 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 5e-17 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 6e-17 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-17 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 6e-17 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 7e-17 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-17 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 8e-17 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 9e-17 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 9e-17 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 9e-17 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-16 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-16 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-16 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-16 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-16 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-16 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 3e-16 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-16 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-16 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 4e-16 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-16 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 5e-16 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 6e-16 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 6e-16 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 8e-16 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 8e-16 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 8e-16 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 9e-16 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-15 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-15 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-15 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-15 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-15 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-15 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-15 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 3e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-15 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-15 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-15 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-15 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 4e-15 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-15 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-15 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-15 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-15 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 9e-15 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-14 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-14 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-14 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-14 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 4e-14 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 4e-14 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-14 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-14 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 5e-14 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 5e-14 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 6e-14 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 6e-14 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 9e-14 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-13 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-13 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-13 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-13 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-13 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-13 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-13 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 3e-13 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 3e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-13 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 6e-13 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 6e-13 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 6e-13 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 7e-13 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 8e-13 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-12 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-12 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-12 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-12 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-12 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-12 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-12 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 4e-12 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-12 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-12 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 5e-12 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 5e-12 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 7e-12 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 7e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 7e-12 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 7e-12 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 8e-12 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 9e-12 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-11 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-11 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-11 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-11 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-11 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-11 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-11 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 2e-11 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 3e-11 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-11 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 6e-11 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 8e-11 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 9e-11 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 9e-11 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-10 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 1e-10 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-10 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-10 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 2e-10 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-10 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-10 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-10 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 3e-10 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-10 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-10 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-10 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-10 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-10 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 6e-10 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 8e-10 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-09 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 1e-09 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-09 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-09 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-09 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-09 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-09 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-09 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-09 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-09 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 6e-09 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 7e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 7e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-08 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-08 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-08 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 1e-08 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-08 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-08 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 8e-08 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 9e-08 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 1e-07 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-07 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-07 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-07 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 2e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-07 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 4e-07 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 4e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 5e-07 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 5e-07 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 6e-07 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 6e-07 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 8e-07 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-06 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-06 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 2e-06 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-06 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-06 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 2e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 3e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-06 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 9e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 9e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-05 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 2e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-05 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 3e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-05 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 4e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 4e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 4e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 5e-05 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 5e-05 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 6e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 6e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 8e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 2e-04 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-04 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 3e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 4e-04 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 4e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-04 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 6e-04 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 6e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 8e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 9e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 9e-04 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 0.001 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.002 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.002 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.002 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.003 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.003 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.003 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.004 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 0.004 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 0.004 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 0.004 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 0.004 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 505 bits (1302), Expect = e-156
Identities = 393/1419 (27%), Positives = 659/1419 (46%), Gaps = 243/1419 (17%)
Query: 40 LSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRME 99
L F ++ +G + + V+ L+ + I + +F+ C + +++E
Sbjct: 76 LPFFVSVFGVIMKNMNLGENVNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLE 135
Query: 100 YLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLL 159
+LKSV Q+ G F GS T S + + I K Y S F +
Sbjct: 136 FLKSVFYQD-GQFHDNNPGSKLT----SDLDFYLEQVNAGIGTKFITIFTYASAFLGLYI 190
Query: 160 FSFILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVY 219
+S + RL+L + + + G++ K + + I E+A+ IRTV
Sbjct: 191 WSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVV 250
Query: 220 SYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKG 278
SY E L +F+ + + + +K F++ L +G + G I +AF W G+ ++
Sbjct: 251 SYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDL 310
Query: 279 EK--------GGSIF--VAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAI 328
GGS+ + GV I M L+++ LPN+T ++ A ++E+++R P +
Sbjct: 311 SNQQPNNDFHGGSVISILLGVLISMFMLTII--LPNITEYMKSLEATNSLYEIINRKPLV 368
Query: 329 DTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKST 388
+ +D GK L ++ +I+F++V F Y +R D + + LN + GK+ VG SG GKST
Sbjct: 369 ENNDD-GKKLKDIK-KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKST 426
Query: 389 TIALLQRFYDPVEGEVLL-DGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFG--- 444
+ L++R YDP EG++++ D + ++ ++LKW RS++G+V+Q+P+LF+ SI NI +
Sbjct: 427 ILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYS 486
Query: 445 -KDGASMDD--------------------------------------------------- 452
KD ++ +
Sbjct: 487 LKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKD 546
Query: 453 --VISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEA 510
V+ +K HDF++ LPD YET VG ++SGGQKQRI+IARA+IR+PKIL+LDEA
Sbjct: 547 SEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEA 606
Query: 511 TSALDAQSERIVQEAID--KVSKGRTTLIIAHRLSTIRTANLIMVL-------------- 554
TS+LD +SE +VQ+ I+ K ++ R T+IIAHRLSTIR AN I VL
Sbjct: 607 TSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDII 666
Query: 555 -------------KAGK--------------------VVESGSHNELMNRGEGGEYYQMV 581
K K ++E G+H+ LM + + G YY M+
Sbjct: 667 GEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALM-KNKNGIYYTMI 725
Query: 582 ELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVG 641
Q+++S+ ++ND D + A +R P M+ S + A N S +S
Sbjct: 726 NNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKHENESASNKKSCKMSDE 785
Query: 642 TPYSYTIQYDPDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASI-GSGAVQP 700
+ + P+ R++ + + + SI +G + P
Sbjct: 786 NASENNAG---GKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSILVAGGLYP 842
Query: 701 INAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKR 760
+ A +S F D + +++ S SL+ L +A+ FIS L++Y +V+GEK+ K
Sbjct: 843 VFALLYAKYVSTLF--DFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKT 900
Query: 761 VREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSY 820
++ +L ++ EI +FDQ+ + + A + + +++++ + + + + I +
Sbjct: 901 MKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFI----VLF 956
Query: 821 IVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQ----------------- 863
+V +V+S+ ++ AV + G+Y+ + M+ A +AR
Sbjct: 957 LVSMVMSFYFCPIVAAV---LTGTYF---IFMRVFAIRARLTANKDVEKKEINQPGTVFA 1010
Query: 864 --------KEGSQLASEAVINHRTITAFSSQKRILGLFKETL----RGPKEESLKHSWYS 911
K+ S L EA N T+ + + L ++ + +G K ++L +S
Sbjct: 1011 YNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLW 1070
Query: 912 GIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDI 971
G S+Q F + AYW+G L+ + I + ++ LFT + S+ D
Sbjct: 1071 GFSQ-SAQLF---INSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDS 1126
Query: 972 SKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQ--MRGRIELKNVFFAYPTRPDQMILKG 1029
+ + ++ R+S ID G IK + ++G+IE+ +V F Y +RP+ I K
Sbjct: 1127 ENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKD 1186
Query: 1030 LSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG--------------SVFMDEQDI 1075
L+ ++ KT A+VG++G GKST++ LL RFYD LK + D Q
Sbjct: 1187 LTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD-LKNDHHIVFKNEHTNDMTNEQDYQGD 1245
Query: 1076 RNYNL-----------------------------------------KQLRSHIALVSQEP 1094
N+ K LR+ ++VSQEP
Sbjct: 1246 EEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEP 1305
Query: 1095 TLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQ 1154
LF +I ENI +GK DA ++K+A A EFI + + YDT G G LSGGQKQ
Sbjct: 1306 MLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQ 1365
Query: 1155 RIALARAILKNPSILLLDEATSALDSVSESLVQEALE--KMMMGRTCVVVAHRLSTIQKS 1212
RIA+ARA+L+ P ILLLDEATS+LDS SE L+++ + K +T + +AHR+++I++S
Sbjct: 1366 RIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRS 1425
Query: 1213 DTIAVIKN----GRVVE-QGSHNELVALSRGGAYYSLIK 1246
D I V N G V+ G+H EL+++ + G Y +K
Sbjct: 1426 DKIVVFNNPDRTGSFVQAHGTHEELLSV-QDGVYKKYVK 1463
|
Length = 1466 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 429 bits (1105), Expect = e-142
Identities = 155/240 (64%), Positives = 196/240 (81%), Gaps = 2/240 (0%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IEF++V F YPSRPD +L+GL+L +P GK+V LVG SG GKST ++LL+RFYDP GE+
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHD 464
LLDG IR L+L+WLRSQ+GLV+QEPVLF +I ENI +GK A+ ++V AAK AN HD
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 465 FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE 524
FI LPDGY+T VG+ G Q+SGGQKQRIAIARAL+R+PKILLLDEATSALDA+SE++VQE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 525 AIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQ 584
A+D+ KGRTT++IAHRLSTIR A+LI VL+ G+VVE G+H+ELM + G Y ++V+ Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ--KGVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 427 bits (1100), Expect = e-141
Identities = 158/240 (65%), Positives = 189/240 (78%), Gaps = 2/240 (0%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IE KNV F YP+RPD ILKGLSL I GKTVALVG SGCGKST++ LLERFYDP G +
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHE 1128
+D DIR+ NL+ LRS I LVSQEP LF GTI ENI YGK DA + E+++AA AN H+
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 1129 FISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQE 1188
FI + DGYDT GERG QLSGGQKQRIA+ARA+L+NP ILLLDEATSALD+ SE LVQE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 1189 ALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
AL++ M GRT +V+AHRLSTI+ +D IAV++NG+VVEQG+H+EL+A + G Y L+K Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA--QKGVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 422 bits (1086), Expect = e-134
Identities = 213/569 (37%), Positives = 325/569 (57%), Gaps = 23/569 (4%)
Query: 686 LLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLL 745
LL + + S + + +G +I ++ L L L +A+L + L
Sbjct: 17 LLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLE-----LLLLLLLLALLGGVLRAL 71
Query: 746 QHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDR 805
Q Y S +G+K+ +R L KL+ + +FD+ S + +RL + V +LV
Sbjct: 72 QSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK--AKSGDLISRLTNDVEAVSNLVSTV 129
Query: 806 MSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKE 865
+ L+ +I + S ++ LSWRL L+++ + PL+ ++L + +R+ ++
Sbjct: 130 LVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLA---LVLSLLARKSRKLSRRVREA 186
Query: 866 GSQLAS---EAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFN 922
+L + E++ R I AF ++ R L F+E + +L+ S + +
Sbjct: 187 LGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLS 246
Query: 923 TASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYV-IAEAGSMTSDISKGSNAVRSV 981
+ T L GG L+ +T L AF++ L I + G + S + + S A +
Sbjct: 247 SLGTVLVLALGGFLVLSGSLTVGALA-AFILYLLRLLTPILQLGEVVSLLQRASAAAERL 305
Query: 982 FAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVA 1041
F +LD E+ D P G IE +NV F+YP + +LK +S IE G+ VA
Sbjct: 306 FELLDEEPEV-EDPPDPLKDTI---GSIEFENVSFSYP--GKKPVLKDISFSIEPGEKVA 359
Query: 1042 LVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTI 1101
+VG SG GKST+I LL R YDP G + +D DIR+ +L LR I +VSQ+P LF+GTI
Sbjct: 360 IVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTI 419
Query: 1102 RENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161
RENIA G+ DA + EI++A LANAHEFI+ + DGYDT GERGV LSGGQ+QR+A+ARA
Sbjct: 420 RENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARA 479
Query: 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNG 1221
+L+NP IL+LDEATSALD+ +E+L+Q+AL+K++ GRT +++AHRLSTI+ +D I V+ NG
Sbjct: 480 LLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNG 539
Query: 1222 RVVEQGSHNELVALSRGGAYYSLIKPQGG 1250
R+VE+G+H EL L++GG Y L + QGG
Sbjct: 540 RIVERGTHEEL--LAKGGLYARLYQAQGG 566
|
Length = 567 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 412 bits (1060), Expect = e-130
Identities = 192/582 (32%), Positives = 319/582 (54%), Gaps = 26/582 (4%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLR 66
L +Y K LL + + S + PL ++ +I+ + + L
Sbjct: 7 LLKYLKYKLLLLAILLLLLSALLSLLLPL---LIGRIIDAL------LADLGELLELLLL 57
Query: 67 LLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVV 126
LL +A+ G+ ++ +R ++ + +R + + +LR + FFD + G ++
Sbjct: 58 LLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGD-----LI 112
Query: 127 STISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLF 186
S ++ND ++ + + + L+ F LSWRL+L L + + + L
Sbjct: 113 SRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Query: 187 GKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQG 246
+ + ++ E+ G +++S IR + ++ AE L RF A ++ ++
Sbjct: 173 ARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRAS 232
Query: 247 FIKGLLMGSMGMI-YVGWAFQAWVGSYLVTEKGEKGGSI--FVAGVSIIMGGLSVLGALP 303
++ LL M ++ +G +G +LV G++ F+ + ++ + LG +
Sbjct: 233 RLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEV- 291
Query: 304 NLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVL 363
++ + A AA R+FE++D P ++ L G IEF +V F YP VL
Sbjct: 292 -VSLLQRASAAAERLFELLDEEPEVEDPPD---PLKDTIGSIEFENVSFSYP--GKKPVL 345
Query: 364 QGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423
+ ++ + G+ V +VG SGSGKST I LL R YDP GE+L+DG IR + L LR ++
Sbjct: 346 KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405
Query: 424 GLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQ 483
G+V+Q+P+LF+ +I ENI G+ A+ +++ A K ANAH+FI LPDGY+T VG+ G
Sbjct: 406 GIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVN 465
Query: 484 MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLS 543
+SGGQ+QR+AIARAL+R+P IL+LDEATSALD ++E ++Q+A+ K+ KGRTTLIIAHRLS
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS 525
Query: 544 TIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQ 585
TI+ A+ I+VL G++VE G+H EL+ + GG Y ++ + Q
Sbjct: 526 TIKNADRIIVLDNGRIVERGTHEELLAK--GGLYARLYQAQG 565
|
Length = 567 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 406 bits (1046), Expect = e-126
Identities = 201/518 (38%), Positives = 299/518 (57%), Gaps = 26/518 (5%)
Query: 72 IGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISN 131
I +SA + G + T R R+R + +S+LRQ++GFFD + G + S +S+
Sbjct: 212 IASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGE-----LTSRLSS 266
Query: 132 DSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLFGKLMM 191
D+ ++ ++ ++ L L L F LS RL++ L + + +FGK
Sbjct: 267 DTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQ 326
Query: 192 GVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGL 251
+ ++ E+ A +AE+A+S +RTV S+ AE RF AL++T++L ++
Sbjct: 327 LLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAG 386
Query: 252 LMGS---MGM-IYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNL-- 305
+ + +GM I V + G LV G++ VS ++ + A+ L
Sbjct: 387 YLWTTSVLGMLIQVL---VLYYGGQLVLTGKVSSGNL----VSFLLYQEQLGEAVRVLSY 439
Query: 306 --TAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVL 363
+ + +A A+ ++FE +DR P I A + G IEF+DV F YP+RPD VL
Sbjct: 440 VYSGMMQAVGASEKVFEYLDRKPNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVL 497
Query: 364 QGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423
+GL + G+ V LVG SGSGKST ALLQ Y P G+VLLDG + + +L Q+
Sbjct: 498 KGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQV 557
Query: 424 GLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQ 483
LV QEPVLF+ S+ ENI +G +++++AAKAANAHDFI + P+GY+T+VG+ G Q
Sbjct: 558 ALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ 617
Query: 484 MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLS 543
+SGGQKQRIAIARAL+R P++L+LDEATSALDA+ E+++QE + RT L+IAHRLS
Sbjct: 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLS 675
Query: 544 TIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMV 581
T+ A+ I+VLK G VVE G+H +LM G Y +V
Sbjct: 676 TVERADQILVLKKGSVVEMGTHKQLMED--QGCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 400 bits (1030), Expect = e-126
Identities = 188/521 (36%), Positives = 289/521 (55%), Gaps = 9/521 (1%)
Query: 730 LFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICA 789
F L VA++ + + + Y + +GE++ +R + L++ +FD+ N S + +
Sbjct: 62 AFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDK--NRSGEVVS 119
Query: 790 RLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIG--SYYS 847
RL T+ +++S++G +S+ ++ + I+ + S +LT +++ PLV+ +
Sbjct: 120 RLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFG 179
Query: 848 RNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKH 907
R V S + R A + A E + RT+ AF + F + E + +
Sbjct: 180 RRVRKLSRESQDRIA--DAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQR 237
Query: 908 SWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSM 967
+ + W G + ++ L Q + A I +
Sbjct: 238 IRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEV 297
Query: 968 TSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMIL 1027
++ + + A + +L +I + + +RG IE + V FAYP RPDQ L
Sbjct: 298 WGELQRAAGAAERLIELLQAEPDIKA-PAHPKTLPVPLRGEIEFEQVNFAYPARPDQPAL 356
Query: 1028 KGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087
GL+L + G+TVALVG SG GKST+ LL RFYDP G + +D D+R + +LR+ +
Sbjct: 357 DGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM 416
Query: 1088 ALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQ 1147
ALV Q+P LFA ++ ENI YG+ DA + E++ AA A+AHEFIS + +GYDTY GERGV
Sbjct: 417 ALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVT 476
Query: 1148 LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLS 1207
LSGGQ+QRIA+ARAILK+ ILLLDEATSALD+ SE LVQ+ALE +M GRT +++AHRL+
Sbjct: 477 LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLA 536
Query: 1208 TIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
T+ K+D I V+ GR+V QG+H EL+A +GG Y L + Q
Sbjct: 537 TVLKADRIVVMDQGRIVAQGTHAELIA--KGGLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 382 bits (984), Expect = e-118
Identities = 193/623 (30%), Positives = 320/623 (51%), Gaps = 34/623 (5%)
Query: 632 NPFSPALSVGTPYSYTIQYDPDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLG--- 688
+ + + + S + S +RLL ++ +W +
Sbjct: 114 SYGAALPAAALWAVLS----SAGASEKEAEQGQSETADLLFRLLGLSGRDWPWLISAFVF 169
Query: 689 -CIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQH 747
++S+G + + G +I DK S ++FF+ + L+ SS+
Sbjct: 170 LTLSSLGEMFI----PFYTGRVIDTLG-GDKGPPALAS---AIFFMCL--LSIASSVSAG 219
Query: 748 Y---SFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGD 804
SF+ ++ R+RE L L+ ++G+FD+ N + + +RL+++ + +
Sbjct: 220 LRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE--NKTGELTSRLSSDTQTMSRSLSL 277
Query: 805 RMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQK 864
+++L++ + + L LS RLT+V + PLV + + ++ + ++A
Sbjct: 278 NVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVA 337
Query: 865 EGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTA 924
+ +Q+A EA+ RT+ +F++++ FKE L + + + + L+++
Sbjct: 338 KANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGML 397
Query: 925 STALAYWYGGRLLTQELITPEHLFQAFLI--LLFTAYVIAEAGSMTSDISKGSNAVRSVF 982
L +YGG+L+ ++ +L +FL+ V + S + + A VF
Sbjct: 398 IQVLVLYYGGQLVLTGKVSSGNLV-SFLLYQEQLGEAV-RVLSYVYSGMMQAVGASEKVF 455
Query: 983 AILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVAL 1042
LDR+ I G + G IE ++V F+YP RPD +LKGL+ + G+ VAL
Sbjct: 456 EYLDRKPNIPLT---GTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVAL 512
Query: 1043 VGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIR 1102
VG SG GKST+ LL+ Y P G V +D + Y+ L +ALV QEP LF+G++R
Sbjct: 513 VGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVR 572
Query: 1103 ENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAI 1162
ENIAYG D + EI AA ANAH+FI +GYDT GE+G QLSGGQKQRIA+ARA+
Sbjct: 573 ENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARAL 632
Query: 1163 LKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGR 1222
++ P +L+LDEATSALD+ E L+QE+ + RT +++AHRLST++++D I V+K G
Sbjct: 633 VRKPRVLILDEATSALDAECEQLLQESRSR--ASRTVLLIAHRLSTVERADQILVLKKGS 690
Query: 1223 VVEQGSHNELVALSRGGAYYSLI 1245
VVE G+H +L+ G Y L+
Sbjct: 691 VVEMGTHKQLME--DQGCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 378 bits (973), Expect = e-118
Identities = 204/532 (38%), Positives = 306/532 (57%), Gaps = 20/532 (3%)
Query: 60 VDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGS 119
+++Y LL VA+ + L T ER + +R ++ FFD G
Sbjct: 57 LNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSG- 115
Query: 120 STTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLS---LAALPLT 176
+VVS ++ D+ +Q I +S L L+ FI S +L+ L A+PL
Sbjct: 116 ----EVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLV 171
Query: 177 LMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQ 236
++P LLFG+ + + + + AG A + + +IRTV ++ E RF A++
Sbjct: 172 ---LLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVE 228
Query: 237 KTMELGIKQGFIKGLL-MGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSI--FVAGVSIIM 293
K E ++ + LL + +++ WVG++ V G++ FV ++
Sbjct: 229 KAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVA 288
Query: 294 GGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSY-VRGEIEFRDVYF 352
G + L + + A AA R+ E++ P I K L +RGEIEF V F
Sbjct: 289 GSIGTLSEV--WGELQRAAGAAERLIELLQAEPDI-KAPAHPKTLPVPLRGEIEFEQVNF 345
Query: 353 CYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIR 412
YP+RPD L GLNL V G++V LVG SG+GKST LL RFYDP G +LLDG +R
Sbjct: 346 AYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLR 405
Query: 413 RLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDG 472
+L LR++M LV Q+PVLFA S+ ENI +G+ A+ ++V +AA+AA+AH+FI+ LP+G
Sbjct: 406 QLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEG 465
Query: 473 YETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKG 532
Y+T +G+ G +SGGQ+QRIAIARA+++D ILLLDEATSALDA+SE++VQ+A++ + KG
Sbjct: 466 YDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKG 525
Query: 533 RTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQ 584
RTTLIIAHRL+T+ A+ I+V+ G++V G+H EL+ +GG Y ++ LQ
Sbjct: 526 RTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELI--AKGGLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 371 bits (955), Expect = e-113
Identities = 196/569 (34%), Positives = 296/569 (52%), Gaps = 38/569 (6%)
Query: 37 VFVLSFVINDYG--NPSSSSLSNDTVDKYTLR--LLYVAIGVGLSAFVEGLCWT------ 86
V + S ++ P S + D V R L +AIG+ L+A E L
Sbjct: 159 VLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLI 218
Query: 87 -RTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKIS 145
+R + + + +LR + +F+ + G + + + I+ + I
Sbjct: 219 AHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGE------IISRVRELEQIREFLTGSIL 272
Query: 146 NTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAG 205
+ L L F+ SW+L+L L + ++ L+F L+ K+IE
Sbjct: 273 TLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQ 332
Query: 206 GIAEQAVSSIRTVYSYVAE-------HETLIRFSNALQKTMELGIKQGFIKGLLMGSMGM 258
+ + I TV + AE L + N KT +L + IK LL +
Sbjct: 333 SFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSV 392
Query: 259 IYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGG-LSVLGALPNL-TAITEAKVAAT 316
+ + W G+ LV E GE VA +++ G +S + L L T +AKVA
Sbjct: 393 LIL------WFGAILVLE-GELTLGQLVA-FNMLAGYFISPITRLSQLWTDFQQAKVALE 444
Query: 317 RIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSV 376
R+ +++D P + D L ++GEIEF +V F Y VL+ L+L +P G+ V
Sbjct: 445 RLGDILDTPPEQEGDKT-LIHLPKLQGEIEFENVSFRYGPDDP-PVLEDLSLEIPPGEKV 502
Query: 377 GLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATS 436
+VG SGSGKST + LL Y P +G +LLDG + + L LR Q+G V Q+P LF+ S
Sbjct: 503 AIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGS 562
Query: 437 ITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIAR 496
I ENI G A+ +++I AA+ A AH+FI LP GY+T VG+ G +SGGQ+QR+A+AR
Sbjct: 563 IRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALAR 622
Query: 497 ALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKA 556
AL+ PKILLLDEATSALD ++E I+ + + ++ +GRT +IIAHRLSTIR+A+ I+VL
Sbjct: 623 ALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQ 682
Query: 557 GKVVESGSHNELMNRGEGGEYYQMVELQQ 585
GK+VE GSH EL+ + GG Y ++ + Q+
Sbjct: 683 GKIVEQGSHEELLAQ--GGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 350 bits (901), Expect = e-112
Identities = 132/236 (55%), Positives = 173/236 (73%), Gaps = 3/236 (1%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+E KNV F YP +L+ +SL I AG+TVALVG SG GKST++ L+ RFYD G +
Sbjct: 1 VEFKNVTFRYPGDGPP-VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHE 1128
+D D+R+Y L LR I LVSQ+ LF T+ ENIAYG+ A E+++AA ANAHE
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 1129 FISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQE 1188
FI + +GYDT GERGV+LSGGQ+QRIA+ARA+LK+P IL+LDEATSALD+ SE LVQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 1189 ALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSL 1244
ALE++M RT V+AHRLSTI+ +D I V+++G++VE+G+H EL L++GG Y L
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEEL--LAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 357 bits (917), Expect = e-110
Identities = 201/587 (34%), Positives = 312/587 (53%), Gaps = 33/587 (5%)
Query: 673 RLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFF 732
RL P +L +A I A + A + L+ F +S + L
Sbjct: 4 RLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD---RSVLWWVPLVV 60
Query: 733 LGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLA 792
+G+AVL I S + Y S + K+ + +R ++ KL+ + +FD++ + + +R+
Sbjct: 61 IGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQP--TGTLLSRIT 118
Query: 793 TEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLV--IGSYYSRNV 850
++ V S D +LV+ + +IV L SW+LTL+++ + P++ + S+
Sbjct: 119 FDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKR- 177
Query: 851 LMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWY 910
++ ++ + + + + + +A E + +R + F Q F + ++K +
Sbjct: 178 -LRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSA 236
Query: 911 SGIGLFSSQFFNTASTALAYWY--------GGRLLTQELITPEHLFQAFLILLFTAYVIA 962
I +Q AS ALA G L + F +I L +
Sbjct: 237 GSISSPITQLI--ASLALAVVLFIALFQAQAGSLTAGDFTA----FITAMIALIRP--LK 288
Query: 963 EAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRP 1022
++ + + +G A S+F +LD E D G + RG +E +NV F YP R
Sbjct: 289 SLTNVNAPMQRGLAAAESLFTLLDSPPEKD----TGTRAIERARGDVEFRNVTFRYPGR- 343
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ 1082
D+ L +SL IE G+TVALVG+SG GKST++ L+ RFY+P G + +D D+ +Y L
Sbjct: 344 DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLAS 403
Query: 1083 LRSHIALVSQEPTLFAGTIRENIAYGK-ADARESEIKKAAVLANAHEFISGMKDGYDTYC 1141
LR +ALVSQ+ LF TI NIAYG+ A +EI++A A A +F+ + G DT
Sbjct: 404 LRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPI 463
Query: 1142 GERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVV 1201
GE GV LSGGQ+QR+A+ARA+LK+ IL+LDEATSALD+ SE LVQ ALE++M GRT +V
Sbjct: 464 GENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLV 523
Query: 1202 VAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
+AHRLSTI+K+D I V+ +GR+VE+G+HNEL L+R G Y L Q
Sbjct: 524 IAHRLSTIEKADRIVVMDDGRIVERGTHNEL--LARNGLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 353 bits (908), Expect = e-107
Identities = 184/530 (34%), Positives = 288/530 (54%), Gaps = 24/530 (4%)
Query: 727 TLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAA 786
L++ L A+ + LL+ Y + +G++L + + L+ + +F E +
Sbjct: 195 VLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYF--EKRSVGE 252
Query: 787 ICARLATEANVVRSLV-GDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPL-VIGS 844
I +R+ E +R + G ++L++ +F ++ V + SW+LTL+++A PL V+ +
Sbjct: 253 IISRV-RELEQIREFLTGSILTLIIDLLF-ALIFLAVMFLYSWKLTLIVLAAIPLNVLIT 310
Query: 845 YYSRNVLMKSMAGKARKAQKEGSQLAS---EAVINHRTITAFSSQKRILGLFKETLRGPK 901
+ +L + K RK +E ++ S E + T+ A +++ R + L
Sbjct: 311 LIFQPLLRR----KTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQV 366
Query: 902 EESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVI 961
K + I S+ L W+G L+ + +T L AF +L Y I
Sbjct: 367 NIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLV-AFNML--AGYFI 423
Query: 962 AEAGSMTS---DISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAY 1018
+ ++ D + A+ + ILD E + D K Q G IE +NV F Y
Sbjct: 424 SPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQ--GEIEFENVSFRY 481
Query: 1019 PTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNY 1078
D +L+ LSL+I G+ VA+VG+SG GKST++ LL Y P +G + +D D+ +
Sbjct: 482 GPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI 540
Query: 1079 NLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYD 1138
+L LR + V Q+P LF+G+IRENIA G +A + EI +AA LA AHEFI + GYD
Sbjct: 541 DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYD 600
Query: 1139 TYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRT 1198
T GE G LSGGQ+QR+ALARA+L P ILLLDEATSALD +E+++ + L +++ GRT
Sbjct: 601 TPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRT 660
Query: 1199 CVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
+++AHRLSTI+ +D I V+ G++VEQGSH EL L++GG Y L + Q
Sbjct: 661 VIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEEL--LAQGGLYARLYQQQ 708
|
Length = 709 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 334 bits (859), Expect = e-106
Identities = 125/236 (52%), Positives = 179/236 (75%), Gaps = 3/236 (1%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+EF++V F YP VL+ ++L +PAG++V LVG SGSGKST + L+ RFYD G +
Sbjct: 1 VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHD 464
L+DG+ +R L LR Q+GLV+Q+ LF ++ ENI +G+ GA+ ++V AA+AANAH+
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 465 FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE 524
FI +LP+GY+T +G+ G ++SGGQ+QRIAIARAL++DP IL+LDEATSALD +SER+VQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 525 AIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQM 580
A++++ K RTT +IAHRLSTI A+ I+VL+ GK+VE G+H EL+ + GG Y ++
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ--GGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 334 bits (859), Expect = e-106
Identities = 131/240 (54%), Positives = 166/240 (69%), Gaps = 4/240 (1%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IE +NV FAY P + +LK +S I AGK VA+VG SG GKSTI+ LL RFYD GS+
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHE 1128
+D QDIR L LR I +V Q+ LF TI NI YG+ DA + E+ +AA A H+
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 1129 FISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQE 1188
I DGYDT GERG++LSGG+KQR+A+ARAILKNP ILLLDEATSALD+ +E +Q
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 1189 ALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
AL + GRT +V+AHRLSTI +D I V+K+GR+VE+G+H EL L++GG Y + K Q
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEEL--LAKGGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 318 bits (817), Expect = e-100
Identities = 129/241 (53%), Positives = 173/241 (71%), Gaps = 6/241 (2%)
Query: 345 IEFRDVYFCY-PSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403
IEF +V F Y P RP VL+ ++ +PAGK V +VG SGSGKST + LL RFYD G
Sbjct: 1 IEFENVTFAYDPGRP---VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS 57
Query: 404 VLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAH 463
+L+DG IR + L LR +G+V Q+ VLF +I NI +G+ A+ ++VI AAKAA H
Sbjct: 58 ILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIH 117
Query: 464 DFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQ 523
D I + PDGY+T VG+ G ++SGG+KQR+AIARA++++P ILLLDEATSALD +ER +Q
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 524 EAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVEL 583
A+ VSKGRTT++IAHRLSTI A+ I+VLK G++VE G+H EL+ + GG Y +M +
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK--GGLYAEMWKA 235
Query: 584 Q 584
Q
Sbjct: 236 Q 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 314 bits (807), Expect = 4e-99
Identities = 114/229 (49%), Positives = 168/229 (73%), Gaps = 2/229 (0%)
Query: 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
G IE +NV F+Y + +LK ++ I+ G+TVA+VG +G GK+T+I LL RFYDP KG
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 1067 SVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANA 1126
+ +D DIR+ + K LRS I +V Q+ LF+GTI ENI G+ +A + E+ +AA A A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 1127 HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
H+FI + +GYDT GE G LS G++Q +A+ARA+L++P IL+LDEATS +D+ +E L+
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 1187 QEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235
QEALEK+M GRT +++AHRLSTI+ +D I V+ +G+++E+G+H+EL+A
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 322 bits (828), Expect = 2e-97
Identities = 177/539 (32%), Positives = 283/539 (52%), Gaps = 43/539 (7%)
Query: 64 TLRLLYVAIGV--GLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSST 121
+ L+ + + V G+ +FV + + + +R+ + +L V FFD Q G+
Sbjct: 55 WVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGT-- 112
Query: 122 TFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIV 181
++S I+ DS + A + + T + SW+L+L + +M V
Sbjct: 113 ---LLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVV---VMLPV 166
Query: 182 PGLL---FGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKT 238
+L K + + ++ S G +AE+ + R V + + RF +
Sbjct: 167 LSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRN 226
Query: 239 MELGIK--------QGFIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVS 290
L +K + + ++ ++ FQA GS G +
Sbjct: 227 RRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTA-------GDF----TA 275
Query: 291 IIMGGLSVLGALPNLTAIT----EAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIE 346
I ++++ L +LT + AA +F ++D P DT +A+ RG++E
Sbjct: 276 FITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAIERARGDVE 332
Query: 347 FRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLL 406
FR+V F YP R D L ++L + G++V LVG SGSGKST + L+ RFY+P G++LL
Sbjct: 333 FRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILL 391
Query: 407 DGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGK-DGASMDDVISAAKAANAHDF 465
DG+ + L LR Q+ LV+Q+ VLF +I NI +G+ + A ++ A AA A DF
Sbjct: 392 DGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDF 451
Query: 466 ITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEA 525
+ KLP G +T +G+ G +SGGQ+QR+AIARAL++D IL+LDEATSALD +SER+VQ A
Sbjct: 452 VDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAA 511
Query: 526 IDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQ 584
++++ +GRTTL+IAHRLSTI A+ I+V+ G++VE G+HNEL+ R G Y Q+ +Q
Sbjct: 512 LERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR--NGLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 307 bits (789), Expect = 1e-96
Identities = 117/230 (50%), Positives = 172/230 (74%), Gaps = 2/230 (0%)
Query: 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402
GEIEF +V F Y VL+ +N + G++V +VG +G+GK+T I LL RFYDP +G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANA 462
++L+DG IR + K LRS +G+V Q+ LF+ +I ENI G+ A+ ++VI AAK A A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 463 HDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIV 522
HDFI KLP+GY+T +G+ G +S G++Q +AIARA++RDPKIL+LDEATS +D ++E+++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 523 QEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRG 572
QEA++K+ KGRT++IIAHRLSTI+ A+ I+VL GK++E G+H+EL+ +
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 314 bits (807), Expect = 2e-94
Identities = 194/543 (35%), Positives = 305/543 (56%), Gaps = 44/543 (8%)
Query: 726 RTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSA 785
+ + L +G+ +L I+S + Y S + K+ +R +L G +M + +FD+ ++
Sbjct: 65 KWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTG 122
Query: 786 AICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVL-----SWRLTLVMIAVQPL 840
+ +R+ ++ V S L+ + + I+GL + SW+L+L++I + P+
Sbjct: 123 TLLSRITYDSEQVAS---SSSGALITVVREG--ASIIGLFIMMFYYSWQLSLILIVIAPI 177
Query: 841 VIGSYYSRNVLMKSMAGKARKAQKEGSQLASEA---VINHRTITAFSSQKRILGLFKETL 897
V + V+ K ++ Q Q+ + A + H+ + F Q+ F +
Sbjct: 178 V---SIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVS 234
Query: 898 RGPKEESLKHSWYSGIGLFSSQFFNTASTALAY-WYGGRL------LTQELITPEHLFQA 950
+++ +K S I Q AS ALA+ Y LT IT +F +
Sbjct: 235 NRMRQQGMKMVSASSISDPIIQLI--ASLALAFVLYAASFPSVMDTLTAGTITV--VFSS 290
Query: 951 FLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQG-RDIKRQMRGRI 1009
+ L+ + ++ + +G A +++FAILD E D +G R I+R +G I
Sbjct: 291 MIALMRP---LKSLTNVNAQFQRGMAACQTLFAILDLEQEKD----EGKRVIER-AKGDI 342
Query: 1010 ELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVF 1069
E +NV F YP + + L+ ++ KI AGKTVALVG+SG GKSTI LL RFYD +G +
Sbjct: 343 EFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401
Query: 1070 MDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKAD--ARESEIKKAAVLANAH 1127
+D D+R+Y L LR+ +ALVSQ LF TI NIAY + + +RE +I++AA +A A
Sbjct: 402 LDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSRE-QIEEAARMAYAM 460
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
+FI+ M +G DT GE GV LSGGQ+QRIA+ARA+L++ IL+LDEATSALD+ SE +Q
Sbjct: 461 DFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520
Query: 1188 EALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKP 1247
AL+++ RT +V+AHRLSTI+K+D I V+++G +VE+G+H EL L++ G Y L K
Sbjct: 521 AALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAEL--LAQNGVYAQLHKM 578
Query: 1248 QGG 1250
Q G
Sbjct: 579 QFG 581
|
Length = 582 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 301 bits (773), Expect = 2e-89
Identities = 139/330 (42%), Positives = 206/330 (62%), Gaps = 13/330 (3%)
Query: 269 VGSYLVTEKGEKG-GSI--FVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRT 325
+G+ LV KG+ G + FV ++++G L + A N + K+ FE+ D
Sbjct: 260 LGAALVQ-KGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLE--EFFEVEDAV 316
Query: 326 PAIDTDDKMG-KALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGS 384
P + D G L V+G +EF DV F Y + + + ++ G++V +VG +G+
Sbjct: 317 PDVR--DPPGAIDLGRVKGAVEFDDVSFSYDNSRQGV--EDVSFEAKPGQTVAIVGPTGA 372
Query: 385 GKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFG 444
GKST I LLQR +DP G +L+DG IR + LR + +V Q+ LF SI +NI G
Sbjct: 373 GKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVG 432
Query: 445 KDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKI 504
+ A+ +++ +AA+ A AHDFI + PDGY+T VG+ G Q+SGG++QR+AIARAL++DP I
Sbjct: 433 RPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI 492
Query: 505 LLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGS 564
L+LDEATSALD ++E V+ A+D++ KGRTT IIAHRLST+R A+ I+V G+VVESGS
Sbjct: 493 LILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGS 552
Query: 565 HNELMNRGEGGEYYQMVELQQMASENDTSN 594
+EL+ R GG + ++ Q M E++
Sbjct: 553 FDELVAR--GGRFAALLRAQGMLQEDERRK 580
|
Length = 588 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 282 bits (724), Expect = 2e-87
Identities = 123/241 (51%), Positives = 166/241 (68%), Gaps = 5/241 (2%)
Query: 345 IEFRDVYFCYPSRPDT-LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403
I F V F Y +PD ++L ++LR+ G+ VG+VG SGSGKST L+QRFY P G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 404 VLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAH 463
VL+DG+ + WLR Q+G+V QE VLF SI +NI G SM+ VI AAK A AH
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 464 DFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQ 523
DFI++LP+GY+T VG+ G +SGGQ+QRIAIARALI +P+IL+ DEATSALD +SE +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 524 EAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVEL 583
+ + GRT +IIAHRLST++ A+ I+V++ G++VE GSH+EL+ G Y + +L
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE--NGLYAYLYQL 236
Query: 584 Q 584
Q
Sbjct: 237 Q 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 292 bits (749), Expect = 2e-86
Identities = 190/534 (35%), Positives = 289/534 (54%), Gaps = 57/534 (10%)
Query: 75 GLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSN 134
G+++F+ C + + + MR ++ V FFD Q G+ ++S I+ DS
Sbjct: 79 GITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGT-----LLSRITYDSE 133
Query: 135 SIQVAICEKISNTL-------AYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLFG 187
QVA S L A + F + F SW+LSL L+ I P +
Sbjct: 134 --QVA--SSSSGALITVVREGASIIGLFIMM---FYYSWQLSL-----ILIVIAPIVSIA 181
Query: 188 KLMMGVIMK--------MIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRF---SNAL- 235
+ V+ K M + G AEQ + + V + + RF SN +
Sbjct: 182 ---IRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMR 238
Query: 236 QKTMELGIKQGFIKGL--LMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIM 293
Q+ M++ + L+ S+ + +V +A A S + T G+I V S ++
Sbjct: 239 QQGMKMVSASSISDPIIQLIASLALAFVLYA--ASFPSVMDTLTA---GTITVV-FSSMI 292
Query: 294 GGLSVLGALPNLTAITEAKVAATR-IFEMVDRTPAIDTDDKMGK-ALSYVRGEIEFRDVY 351
+ L +L N+ A + +AA + +F ++D D GK + +G+IEFR+V
Sbjct: 293 ALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE----GKRVIERAKGDIEFRNVT 348
Query: 352 FCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKI 411
F YP + + L+ +N ++PAGK+V LVG SGSGKST LL RFYD EGE+LLDG+ +
Sbjct: 349 FTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL 407
Query: 412 RRLHLKWLRSQMGLVNQEPVLFATSITENILFG-KDGASMDDVISAAKAANAHDFITKLP 470
R L LR+Q+ LV+Q LF +I NI + + S + + AA+ A A DFI K+
Sbjct: 408 RDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMD 467
Query: 471 DGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS 530
+G +T +G+ G +SGGQ+QRIAIARAL+RD IL+LDEATSALD +SER +Q A+D++
Sbjct: 468 NGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527
Query: 531 KGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQ 584
K RT+L+IAHRLSTI A+ I+V++ G++VE G+H EL+ + G Y Q+ ++Q
Sbjct: 528 KNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ--NGVYAQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 289 bits (742), Expect = 3e-85
Identities = 125/268 (46%), Positives = 180/268 (67%), Gaps = 6/268 (2%)
Query: 982 FAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVA 1041
F + D ++ D P D+ R ++G +E +V F+Y ++ +S + + G+TVA
Sbjct: 310 FEVEDAVPDVR-DPPGAIDLGR-VKGAVEFDDVSFSYDNSRQG--VEDVSFEAKPGQTVA 365
Query: 1042 LVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTI 1101
+VG +G GKST+I LL+R +DP G + +D DIR LR +IA+V Q+ LF +I
Sbjct: 366 IVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSI 425
Query: 1102 RENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161
+NI G+ DA + E++ AA A AH+FI DGYDT GERG QLSGG++QR+A+ARA
Sbjct: 426 EDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARA 485
Query: 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNG 1221
+LK+P IL+LDEATSALD +E+ V+ AL+++M GRT ++AHRLST++ +D I V NG
Sbjct: 486 LLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNG 545
Query: 1222 RVVEQGSHNELVALSRGGAYYSLIKPQG 1249
RVVE GS +ELVA RGG + +L++ QG
Sbjct: 546 RVVESGSFDELVA--RGGRFAALLRAQG 571
|
Length = 588 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 274 bits (703), Expect = 1e-84
Identities = 118/219 (53%), Positives = 164/219 (74%)
Query: 341 VRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV 400
++G ++F++V F YP+RPDTLVLQ ++ + G+ LVG SGSGKST +ALL+ FY P
Sbjct: 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67
Query: 401 EGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAA 460
G+VLLDG I + K+L S++ LV QEPVLFA S+ +NI +G S + V AA+ A
Sbjct: 68 GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKA 127
Query: 461 NAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER 520
+AH FI++L GY+T+VG+ G Q+SGGQKQR+AIARALIR+P++L+LDEATSALDA+SE+
Sbjct: 128 HAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187
Query: 521 IVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKV 559
VQ+A+ + RT L+IAHRLST+ A+ I+VL G++
Sbjct: 188 QVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 271 bits (694), Expect = 2e-83
Identities = 112/219 (51%), Positives = 155/219 (70%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
++G ++ +NV FAYPTRPD ++L+ +S + G+ ALVG SG GKST++ LLE FY P
Sbjct: 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67
Query: 1065 KGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLA 1124
G V +D + I Y K L S ++LV QEP LFA ++++NIAYG +K+AA A
Sbjct: 68 GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKA 127
Query: 1125 NAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSES 1184
+AH FIS + GYDT GE+G QLSGGQKQR+A+ARA+++NP +L+LDEATSALD+ SE
Sbjct: 128 HAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187
Query: 1185 LVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRV 1223
VQ+AL RT +V+AHRLST++++D I V+ GR+
Sbjct: 188 QVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 287 bits (735), Expect = 3e-83
Identities = 149/388 (38%), Positives = 217/388 (55%), Gaps = 30/388 (7%)
Query: 210 QAVSSIRTVYSYVAEH-------ETLIRFSNALQKTMELGIKQGFIKGLLMGSMGMIYVG 262
++V+ I T+ + E L + A + LG G L+ I +
Sbjct: 322 ESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILL- 380
Query: 263 WAFQAWVGSYLVTEKGEKGGSIFVAG-VSIIMGGLSVLGALPNLTAI----TEAKVAATR 317
W G++LV GG++ V+ M V + L + + +A R
Sbjct: 381 -----WFGAHLVI-----GGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALER 430
Query: 318 IFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDT-LVLQGLNLRVPAGKSV 376
+ ++++ +P + AL +RG I F ++ F Y PD+ VL LNL + G+ +
Sbjct: 431 LGDILN-SPTEPRSAGLA-ALPELRGAITFENIRFRY--APDSPEVLSNLNLDIKPGEFI 486
Query: 377 GLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATS 436
G+VG SGSGKST LLQR Y P G+VL+DG + WLR QMG+V QE VLF+ S
Sbjct: 487 GIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRS 546
Query: 437 ITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIAR 496
I +NI GA + VI AAK A AHDFI++LP GY T+VG+ G +SGGQ+QRIAIAR
Sbjct: 547 IRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIAR 606
Query: 497 ALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKA 556
AL+ +P+IL+ DEATSALD +SE ++ + ++ +GRT +IIAHRLST+R + I+VL+
Sbjct: 607 ALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEK 666
Query: 557 GKVVESGSHNELMNRGEGGEYYQMVELQ 584
G++ ESG H EL+ G Y ++ + Q
Sbjct: 667 GQIAESGRHEELLA--LQGLYARLWQQQ 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 282 bits (724), Expect = 1e-81
Identities = 164/528 (31%), Positives = 260/528 (49%), Gaps = 19/528 (3%)
Query: 728 LSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAI 787
L+L L VA+ L+ Y F+ + ++ + +L L+ +G+F+
Sbjct: 181 LALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESR--RVGDT 238
Query: 788 CARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIG-SYY 846
AR+ + L G +++++ +F VF V S LT V+I S +
Sbjct: 239 VARVRELEQIRNFLTGSALTVVLDLLFVVVF-LAVMFFYSPTLTGVVIGSLVCYALLSVF 297
Query: 847 SRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLK 906
+L K + K ++ S L E+V TI A +++ + + L S +
Sbjct: 298 VGPILRKRVEDKFERSAAATSFL-VESVTGIETIKATATEPQFQNRWDRQLAAYVAASFR 356
Query: 907 HSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGS 966
+ I + + + A+ W+G L+ ++P L AF + V
Sbjct: 357 VTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLV-AFN--MLAGRVTQPVLR 413
Query: 967 MTS---DISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPD 1023
+ D + A+ + IL+ +E G ++RG I +N+ F Y PD
Sbjct: 414 LAQLWQDFQQTGIALERLGDILNSPTE---PRSAGLAALPELRGAITFENIRFRY--APD 468
Query: 1024 Q-MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ 1082
+L L+L I+ G+ + +VG SG GKST+ LL+R Y P G V +D D+ +
Sbjct: 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAW 528
Query: 1083 LRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCG 1142
LR + +V QE LF+ +IR+NIA A + AA LA AH+FIS + GY+T G
Sbjct: 529 LRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVG 588
Query: 1143 ERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVV 1202
E+G LSGGQ+QRIA+ARA++ NP IL+ DEATSALD SE+L+ + ++ GRT +++
Sbjct: 589 EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIII 648
Query: 1203 AHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGG 1250
AHRLST++ D I V++ G++ E G H EL+AL G Y L + Q G
Sbjct: 649 AHRLSTVRACDRIIVLEKGQIAESGRHEELLAL--QGLYARLWQQQSG 694
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 274 bits (703), Expect = 6e-81
Identities = 141/325 (43%), Positives = 194/325 (59%), Gaps = 8/325 (2%)
Query: 921 FNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRS 980
F+T + + + +T L +L + + G +I + +
Sbjct: 177 FSTGLRVMMT-MSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEK 235
Query: 981 VFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAY-PTRPDQMILKGLSLKIEAGKT 1039
+F +LD +E+ D+P + G + NV FAY P RP IL G+S I GKT
Sbjct: 236 MFDLLDVEAEVS-DAPDAPPLWPVRLGAVAFINVSFAYDPRRP---ILNGISFTIPLGKT 291
Query: 1040 VALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAG 1099
VA+VG+SG GKSTI+ LL RFYD GS+ +D QDIR+ + LR I +V Q+ LF
Sbjct: 292 VAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND 351
Query: 1100 TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALA 1159
TI NI YG+ DA E+ AA A H+FI + +GYDT GERG++LSGG+KQR+A+A
Sbjct: 352 TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIA 411
Query: 1160 RAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIK 1219
R ILKNP IL+LDEATSALD+ +E +Q AL ++ GRT +V+AHRLSTI +D I V+
Sbjct: 412 RTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLD 471
Query: 1220 NGRVVEQGSHNELVALSRGGAYYSL 1244
NGR+VE+G+H EL L+ GG Y +
Sbjct: 472 NGRIVERGTHEEL--LAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 260 bits (668), Expect = 2e-80
Identities = 98/214 (45%), Positives = 132/214 (61%), Gaps = 43/214 (20%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IE KNV F+YP RP +LK +SL I+ G+ VA+VG SG GKST++ LL R YDP G +
Sbjct: 1 IEFKNVSFSYPGRPKP-VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHE 1128
+D D+R+ +L+ LR +IA V Q+P LF+GTIRENI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 1129 FISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQE 1188
LSGGQ+QRIA+ARA+L++P IL+LDEATSALD +E+L+ E
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 1189 ALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGR 1222
AL + G+T +V+AHRLSTI+ +D I V+ +GR
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 264 bits (678), Expect = 1e-77
Identities = 118/243 (48%), Positives = 168/243 (69%), Gaps = 6/243 (2%)
Query: 339 SYVRGEIEFRDVYFCY-PSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFY 397
G + F +V F Y P RP +L G++ +P GK+V +VG SG+GKST + LL RFY
Sbjct: 257 PVRLGAVAFINVSFAYDPRRP---ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY 313
Query: 398 DPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAA 457
D G + +DG IR + + LR +G+V Q+ VLF +I NI +G+ A+ ++V +AA
Sbjct: 314 DVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAA 373
Query: 458 KAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ 517
+AA HDFI LP+GY+T VG+ G ++SGG+KQR+AIAR ++++P IL+LDEATSALD
Sbjct: 374 EAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTH 433
Query: 518 SERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEY 577
+E+ +Q A+ +VS GRTTL+IAHRLSTI A+ I+VL G++VE G+H EL+ GG Y
Sbjct: 434 TEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA--GGLY 491
Query: 578 YQM 580
+M
Sbjct: 492 AEM 494
|
Length = 497 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 248 bits (637), Expect = 3e-76
Identities = 96/214 (44%), Positives = 129/214 (60%), Gaps = 43/214 (20%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IEF++V F YP RP VL+ ++L + G+ V +VG SGSGKST + LL R YDP GE+
Sbjct: 1 IEFKNVSFSYPGRPKP-VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHD 464
L+DG +R L L+ LR + V Q+P LF+ +I ENIL
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL---------------------- 97
Query: 465 FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE 524
SGGQ+QRIAIARAL+RDP IL+LDEATSALD ++E ++ E
Sbjct: 98 --------------------SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 525 AIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGK 558
A+ ++KG+T ++IAHRLSTIR A+ I+VL G+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 243 bits (622), Expect = 2e-73
Identities = 111/241 (46%), Positives = 157/241 (65%), Gaps = 5/241 (2%)
Query: 1009 IELKNVFFAYPTRPDQ-MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
I ++V F Y +PD +IL +SL+I+ G+ V +VG+SG GKST+ L++RFY P G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAH 1127
V +D D+ + LR + +V QE LF +IR+NIA + +AA LA AH
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
+FIS + +GYDT GE+G LSGGQ+QRIA+ARA++ NP IL+ DEATSALD SE +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 1188 EALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKP 1247
+ + GRT +++AHRLST++ +D I V++ GR+VEQGSH+EL L+ G Y L +
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDEL--LAENGLYAYLYQL 236
Query: 1248 Q 1248
Q
Sbjct: 237 Q 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 255 bits (654), Expect = 3e-72
Identities = 152/534 (28%), Positives = 261/534 (48%), Gaps = 44/534 (8%)
Query: 72 IGVGLSAFVEG-LCW-----TRTAERQTS-RMRMEYLKSVLRQEVGFFDTQEQGSSTTFQ 124
+G+GL+A ++G L W R + + + M +L +LR V FF + G
Sbjct: 198 LGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAG------ 251
Query: 125 VVSTISN--DSNSIQVA--ICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFI 180
I++ N QVA + +++ T F L + L+L + + +
Sbjct: 252 ---DIASRVQLND-QVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINV 307
Query: 181 VPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTM- 239
+ L + + ++ + G G+A + SI T+ + E + R++ K +
Sbjct: 308 LALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLN 367
Query: 240 ---ELGIKQGFIKGL--LMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMG 294
ELG+ + L L+ S+ + VG V E G+ + VA S++
Sbjct: 368 AQQELGVLTQILGVLPTLLTSLNSALI-----LVVGGLRVME-GQLTIGMLVAFQSLMSS 421
Query: 295 GLSVLGALPNL-TAITEAKVAATRIFEMVDRTPAIDTDDKMGKALS-----YVRGEIEFR 348
L + L + E + R+ +++ +++ A + G +E R
Sbjct: 422 FLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELR 481
Query: 349 DVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDG 408
++ F Y S + +++ +L + G+ V LVGGSGSGKST L+ Y P GE+L DG
Sbjct: 482 NITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDG 540
Query: 409 YKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITK 468
+ + L + + +V+Q+ LF ++ +N+ D++ A K A HD IT
Sbjct: 541 IPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITS 600
Query: 469 LPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDK 528
P GY+ ++ + G +SGGQ+QR+ IARAL+R+P IL+LDEATSALD ++E+I+ + + +
Sbjct: 601 RPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR 660
Query: 529 VSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVE 582
+G T +I+AHRLSTIR + I+VL+ GKVV+ G+H EL GG Y +++
Sbjct: 661 --RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV--GGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 253 bits (649), Expect = 2e-71
Identities = 152/539 (28%), Positives = 258/539 (47%), Gaps = 40/539 (7%)
Query: 726 RTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSA 785
R L L A+L + + LQ Y + KL + + L ++ + +F Q +
Sbjct: 194 RPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQR--HAG 251
Query: 786 AICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSY 845
I +R+ V L G + + VF ++ L+ LTL+ IA + + +
Sbjct: 252 DIASRVQLNDQVAEFLSGQLATTAL-DAVMLVFYALLMLLYDPVLTLIGIAFAAINVLAL 310
Query: 846 YSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTIT----------AFSSQKRILGLFKE 895
++ + R+ Q++ +L A+ ++I FS R G +
Sbjct: 311 Q---LVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFS---RWAGYQAK 364
Query: 896 TLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHL--FQAFLI 953
L +E + + + ++AL GG + + +T L FQ+ L+
Sbjct: 365 LLNAQQELGVLTQILGVL----PTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQS-LM 419
Query: 954 LLFTAYV---IAEAGS---MTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRG 1007
F V + G+ + D+++ + +R+ L E + ++ G
Sbjct: 420 SSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEP---SPRLSG 476
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
+EL+N+ F Y + + +++ SL ++ G+ VALVG SG GKSTI L+ Y P G
Sbjct: 477 YVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAH 1127
+ D + L + +A+V Q+ LF GT+R+N+ ++++ +A A H
Sbjct: 536 ILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIH 595
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
+ I+ GYD E G LSGGQ+QR+ +ARA+++NPSIL+LDEATSALD +E ++
Sbjct: 596 DVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIID 655
Query: 1188 EALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIK 1246
+ L + G TC++VAHRLSTI+ D I V++ G+VV++G+H EL A GGAY LI+
Sbjct: 656 DNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWA--VGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 247 bits (632), Expect = 2e-70
Identities = 158/461 (34%), Positives = 254/461 (55%), Gaps = 39/461 (8%)
Query: 150 YLSTFFFCLLF---SFILSWRLSLAALPLTLMFIVPGLLFGKLMMGVI---MKMIESY-- 201
+L+TF L +F + WRLS+ + L +++I L KL+M +E +
Sbjct: 137 HLATFVALFLLIPTAFAMDWRLSIVLMVLGILYI----LIAKLVMQRTKNGQAAVEHHYH 192
Query: 202 GVAGGIAEQAVSSIRTVYSY---VAEHETLIRFSNALQKTME-----LGIKQGFIKGLLM 253
V +++ ++S++ V+SY AE L +F+N L + G +
Sbjct: 193 NVFKHVSD-SISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMAST 251
Query: 254 GSMGMIYVGWAFQAWVGSYLVTEKGEKG-GSI--FVAGVSIIMGGLSVLGALPNLTAITE 310
SM I V +G+ LV KGE G + F+ ++++G L + I E
Sbjct: 252 ISMMCILV-------IGTVLV-IKGELSVGEVIAFIGFANLLIGRLDQMSGFITQ--IFE 301
Query: 311 AKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRV 370
A+ F++ D + + L V+G +EFR + F + + + ++
Sbjct: 302 ARAKLEDFFDLEDSVFQREEPADAPE-LPNVKGAVEFRHITFEFANSSQGV--FDVSFEA 358
Query: 371 PAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEP 430
AG++V +VG +G+GK+T I LLQR YDP G++L+DG I + + LR + V Q+
Sbjct: 359 KAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDA 418
Query: 431 VLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQ 490
LF SI ENI G++GA+ ++V AAKAA AHDFI K +GY+T VG+ G ++SGG++Q
Sbjct: 419 GLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQ 478
Query: 491 RIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANL 550
R+AIARA++++ IL+LDEATSALD ++E V+ AID + K RTT IIAHRLST+R A+L
Sbjct: 479 RLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADL 538
Query: 551 IMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASEND 591
++ L G+++E GS EL+ + G +Y+++ + +
Sbjct: 539 VLFLDQGRLIEKGSFQELIQK--DGRFYKLLRRSGLLTNQP 577
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 245 bits (628), Expect = 4e-70
Identities = 131/335 (39%), Positives = 186/335 (55%), Gaps = 13/335 (3%)
Query: 920 FFNTASTALAYWYGG-RLLTQELITPEHLFQAFLILLFTAYV---IAEAGSMTSDISKGS 975
FF S AL Y G RLL + +T LF +L+ + + GS + G
Sbjct: 232 FFAYLSIALVAVYIGFRLLGEGDLT---LFAGLFVLILAPEFFQPLRDLGSFFHAAAAGE 288
Query: 976 NAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIE 1035
A +F +L+ P S + ++ + I L+N+ F YP L L+L I+
Sbjct: 289 AAADKLFTLLESPVA-TPGSGEKAEVANEPPIEISLENLSFRYPDGK--PALSDLNLTIK 345
Query: 1036 AGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPT 1095
AG+ ALVG SG GKST++ LL F P +G + ++ D+R+ + + R I+ VSQ P
Sbjct: 346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPY 405
Query: 1096 LFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQR 1155
LFAGTIRENI + DA + EI A A EF+ DG DT GE G LSGGQ QR
Sbjct: 406 LFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQR 464
Query: 1156 IALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTI 1215
+ALARA+L S+LLLDE T+ LD+ +E ++ +AL+++ +T +V+ HRL +D I
Sbjct: 465 LALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRI 524
Query: 1216 AVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGG 1250
V+ NGR+VEQG+H EL + G Y +L+K Q G
Sbjct: 525 VVLDNGRLVEQGTHEEL--SEKQGLYANLLKQQEG 557
|
Length = 559 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 248 bits (636), Expect = 6e-70
Identities = 137/440 (31%), Positives = 229/440 (52%), Gaps = 28/440 (6%)
Query: 145 SNTLAYLSTFFFCLLFSFILSWRLS--LAALPLTLMFIVPGLLFGKLMMGVIMKMIESYG 202
S TL L F LLF +++ + L +PL + ++ LL G L+ + ++ E
Sbjct: 261 SATLTALIDLPFALLFLLVIAI-IGGPLVWVPLVAIPLI--LLPGLLLQRPLSRLAEESM 317
Query: 203 VAG----GIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSMGM 258
+ +++S + T+ + AE R+ + G+K F+ L
Sbjct: 318 RESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQF 377
Query: 259 I----YVGWAFQAWVGSYLVTEKGEKGGSIFVAGV---SIIMG-GLSVLGALPNL-TAIT 309
I V VG YL+++ G + + G+ ++ G L+ LG L L T
Sbjct: 378 IQQLVSVAIVV---VGVYLISD-----GELTMGGLIACVMLSGRALAPLGQLAGLLTRYQ 429
Query: 310 EAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLR 369
+AK A + E++ P + ++GEIEFR+V F YP + +T L ++L
Sbjct: 430 QAKTALQSLDELMQL-PVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLT 487
Query: 370 VPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQE 429
+ G+ V ++G GSGKST + LL Y P EG VLLDG IR++ LR +G V Q+
Sbjct: 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQD 547
Query: 430 PVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQK 489
P LF ++ +NI G A ++++ AA+ A +F+ + PDG + Q+G+ G +SGGQ+
Sbjct: 548 PRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQR 607
Query: 490 QRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTAN 549
Q +A+ARAL+RDP ILLLDE TSA+D +SE ++ + + G+T +++ HR S + +
Sbjct: 608 QAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVD 667
Query: 550 LIMVLKAGKVVESGSHNELM 569
I+V+ G++V G ++++
Sbjct: 668 RIIVMDNGRIVADGPKDQVL 687
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 244 bits (624), Expect = 7e-70
Identities = 150/512 (29%), Positives = 228/512 (44%), Gaps = 45/512 (8%)
Query: 726 RTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSA 785
V +L + LQ + + + ++RE+LL + W +
Sbjct: 44 LPALGALALVLLLRALLGWLQERAAARAAAAVKSQLRERLLEAVAALGPRWLQGRPSGEL 103
Query: 786 AICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVL---SWRLTLVMIAVQPLV- 841
A LA E V +L G L Q + + + + W L+++ PL+
Sbjct: 104 AT---LALEG--VEALDGYFARYLPQLVLAVIVPLAILAAVFPQDWISGLILLLTAPLIP 158
Query: 842 -----IGSYYSRNVLMKSMAGKARKAQKEGSQLAS---EAVINHRTITAFSSQKRILGLF 893
IG ARK S+L+ + + T+ F K
Sbjct: 159 IFMILIGWA---------AQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAI 209
Query: 894 KET---LRGPKEESLKHSWYSGIGLFSSQFFNTASTAL-AYWYGGRLLTQELITPEHLFQ 949
+ + R L+ ++ S L + F T S AL A + G RLL +L L
Sbjct: 210 RRSSEEYRERTMRVLRIAFLSSAVL---ELFATLSVALVAVYIGFRLLAGDL----DLAT 262
Query: 950 AFLILLFT--AYV-IAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMR 1006
+LL Y+ + + G+ + G A ++FA+LD +
Sbjct: 263 GLFVLLLAPEFYLPLRQLGAQYHARADGVAAAEALFAVLDAAPRPLAGK---APVTAAPA 319
Query: 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
+E V AYP R L+ +S + G+ VALVG SG GKST++ LL F DP +G
Sbjct: 320 PSLEFSGVSVAYPGRRP--ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEG 377
Query: 1067 SVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANA 1126
S+ ++ + + + R IA V Q P LFAGTI ENI + DA ++EI++A A
Sbjct: 378 SIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGL 437
Query: 1127 HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
EF++ + G DT GE G LSGGQ QR+ALARA L++ +LLLDE T+ LD+ +E+ V
Sbjct: 438 DEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEV 497
Query: 1187 QEALEKMMMGRTCVVVAHRLSTIQKSDTIAVI 1218
EAL + GRT ++V HRL+ +D I V+
Sbjct: 498 LEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 230 bits (590), Expect = 3e-69
Identities = 99/221 (44%), Positives = 139/221 (62%), Gaps = 1/221 (0%)
Query: 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
GRIE +NV F+YP + L +SL I AG+ VA++G+ G GKST++ LL Y P G
Sbjct: 1 GRIEFRNVSFSYPNQE-IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 1067 SVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANA 1126
SV +D DIR + LR +I V Q+ TLF GT+R+NI G A + I +AA LA
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 1127 HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
+F++ +G D GERG LSGGQ+Q +ALARA+L +P ILLLDE TSA+D SE +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 1187 QEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQG 1227
+E L +++ +T +++ HR S + D I V+ +GR+V G
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 243 bits (623), Expect = 4e-68
Identities = 162/529 (30%), Positives = 265/529 (50%), Gaps = 36/529 (6%)
Query: 727 TLSLFFLGVA---VLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNT 783
TL + +GVA V +F+ L+ Y V G+K + KL +++ + +
Sbjct: 185 TLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRM----EARPA 240
Query: 784 SAAICARLATEANVVRSLVGDR-MSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVI 842
S A E VR ++ L+ F +F ++ ++ L V + PL++
Sbjct: 241 SVGSFANQLREFESVRDFFTSATLTALIDLPFALLFLLVIAII-GGPLVWVPLVAIPLIL 299
Query: 843 GSYYSRNVLMKSMAGKARKAQKEGSQ---LASEAVINHRTITAFSSQKRILGLFKETLRG 899
+L + ++ A ++ +E +Q + E++ TI A +++ R +++T+
Sbjct: 300 LPGL---LLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAA 356
Query: 900 PKEESLKHSWYSGIGLFSSQFFNTASTALAYWYG------GRLLTQELITPEHLFQAFLI 953
LK + S + +QF + G G L LI A ++
Sbjct: 357 LARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLI-------ACVM 409
Query: 954 LLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDR--RSEIDPDSPQGRDIKR-QMRGRIE 1010
L + +A G + +++ A ++ LD + ++ R + R +++G IE
Sbjct: 410 L--SGRALAPLGQLAGLLTRYQQA-KTALQSLDELMQLPVE-RPEGTRFLHRPRLQGEIE 465
Query: 1011 LKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFM 1070
+NV FAYP + + L +SL I G+ VA++G+ G GKST++ LL Y P +GSV +
Sbjct: 466 FRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLL 524
Query: 1071 DEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFI 1130
D DIR + LR +I V Q+P LF GT+R+NIA G A + EI +AA LA EF+
Sbjct: 525 DGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFV 584
Query: 1131 SGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEAL 1190
DG D GERG LSGGQ+Q +ALARA+L++P ILLLDE TSA+D+ SE ++ L
Sbjct: 585 RRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRL 644
Query: 1191 EKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGG 1239
++ + G+T V+V HR S + D I V+ NGR+V G ++++ R G
Sbjct: 645 KRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEALRKG 693
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 221 bits (565), Expect = 8e-66
Identities = 92/221 (41%), Positives = 137/221 (61%), Gaps = 1/221 (0%)
Query: 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402
G IEFR+V F YP++ L ++L + AG+ V ++G GSGKST + LL Y P G
Sbjct: 1 GRIEFRNVSFSYPNQE-IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANA 462
VLLDG IR+L LR +G V Q+ LF ++ +NI G A + ++ AA+ A
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 463 HDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIV 522
DF+ K P+G + Q+G+ G +SGGQ+Q +A+ARAL+ DP ILLLDE TSA+D SE +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 523 QEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESG 563
+E + ++ +T +II HR S + + I+V+ +G++V G
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 219 bits (561), Expect = 3e-65
Identities = 89/224 (39%), Positives = 134/224 (59%), Gaps = 6/224 (2%)
Query: 1007 GRIELKNVFFAYPTRPD-QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLK 1065
G IE KNV Y RP+ +LK +S I+ G+ V +VG++G GKS+++ L R +
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 1066 GSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIA-YGKADARESEIKKAAVLA 1124
GS+ +D DI L LRS I+++ Q+P LF+GTIR N+ +G+ + E+ +A
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYS--DEELWQALERV 116
Query: 1125 NAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSES 1184
EF+ + G DT E G LS GQ+Q + LARA+L+ IL+LDEAT+++D +++
Sbjct: 117 GLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176
Query: 1185 LVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGS 1228
L+Q+ + + T + +AHRL TI SD I V+ GRVVE S
Sbjct: 177 LIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 227 bits (580), Expect = 2e-63
Identities = 170/546 (31%), Positives = 269/546 (49%), Gaps = 83/546 (15%)
Query: 79 FVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQV 138
+ + L + R A ++R + + + LRQ + FDTQ G Q++S ++ND+ I+
Sbjct: 83 YAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVG-----QLISRVTNDTEVIRD 137
Query: 139 AICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMI 198
++ L + L+ F L WR++L A + I P +L V+M +
Sbjct: 138 LYVTVVATVLRSAALIGAMLVAMFSLDWRMALVA-----IMIFPAVL-------VVMVIY 185
Query: 199 ESYGVAGGIAEQAVSSIRTVYSYVAE-----HETL------------IRFSNALQKT--- 238
+ Y + +R V +Y+A+ +E + RF + +
Sbjct: 186 QRY---------STPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRS 236
Query: 239 -----MELGIKQGFI-KGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKG-GSIFVAGVSI 291
M+ GF+ + LL S+ F A + L+ G G+I V +
Sbjct: 237 HYMARMQTLRLDGFLLRPLL--SL--------FSALILCGLLMLFGFSASGTI---EVGV 283
Query: 292 IMGGLSVLGAL--P--NLTA----ITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRG 343
+ +S LG L P LT + +A VA R+FE++D +D + L G
Sbjct: 284 LYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND--DRPLQ--SG 339
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403
I+ +V F Y R D LVLQ +NL VP+ V LVG +GSGKST +LL +Y EGE
Sbjct: 340 RIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE 397
Query: 404 VLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAH 463
+ LDG + L LR + +V Q+PV+ A + N+ G+D S + V A +
Sbjct: 398 IRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRD-ISEEQVWQALETVQLA 456
Query: 464 DFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQ 523
+ LPDG T +G+ G +S GQKQ +A+AR L++ P+IL+LDEAT+ +D+ +E+ +Q
Sbjct: 457 ELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQ 516
Query: 524 EAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVEL 583
+A+ V + T ++IAHRLSTI A+ I+VL G+ VE G+H +L+ G Y+QM +L
Sbjct: 517 QALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLL--AAQGRYWQMYQL 574
Query: 584 QQMASE 589
Q E
Sbjct: 575 QLAGEE 580
|
Length = 592 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 225 bits (576), Expect = 3e-63
Identities = 103/275 (37%), Positives = 164/275 (59%), Gaps = 5/275 (1%)
Query: 311 AKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRV 370
+ AA ++F +++ A + + + EI ++ F YP L LNL +
Sbjct: 287 GEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPD--GKPALSDLNLTI 344
Query: 371 PAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEP 430
AG+ LVG SG+GKST + LL F P +GE+ ++G +R L + R Q+ V+Q P
Sbjct: 345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP 404
Query: 431 VLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQ 490
LFA +I ENIL + AS +++I+A A +F+ K PDG +T +G+ G +SGGQ Q
Sbjct: 405 YLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQ 463
Query: 491 RIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANL 550
R+A+ARAL+ +LLLDE T+ LDA++E+I+ +A+ +++K +T L+I HRL A+
Sbjct: 464 RLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADR 523
Query: 551 IMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQ 585
I+VL G++VE G+H EL + G Y +++ Q+
Sbjct: 524 IVVLDNGRLVEQGTHEELSE--KQGLYANLLKQQE 556
|
Length = 559 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 224 bits (574), Expect = 9e-63
Identities = 93/240 (38%), Positives = 153/240 (63%), Gaps = 4/240 (1%)
Query: 1006 RGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLK 1065
+ + L NV F YP +P Q +LKGLSL+I+AG+ VAL+G++GCGKST++ LL R +DP +
Sbjct: 336 QVSLTLNNVSFTYPDQP-QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQ 394
Query: 1066 GSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLAN 1125
G + ++ Q I +Y+ LR I++VSQ LF+ T+R+N+ +A + + +
Sbjct: 395 GEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVG 454
Query: 1126 AHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL 1185
+ + G + + GE G QLSGG+++R+ +ARA+L + +LLLDE T LD+ +E
Sbjct: 455 LEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQ 513
Query: 1186 VQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLI 1245
+ E L + +T +++ HRL+ +++ D I V+ NG+++EQG+H EL+A + G YY L
Sbjct: 514 ILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLA--QQGRYYQLK 571
|
Length = 574 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 223 bits (569), Expect = 4e-62
Identities = 180/611 (29%), Positives = 290/611 (47%), Gaps = 77/611 (12%)
Query: 665 SYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSK 724
SY + R+L I IA+I A+ G +I I SK
Sbjct: 12 SYLNVHKNRVLLI-----------VIANITLAAITIAEPILFGRIID--------AISSK 52
Query: 725 SRTLSLFFL--GVAVLNFISSLLQHYSFSVMGEKLTKRVREKLL----GKLMTFEIGWFD 778
S L L G V N I+ +L + ++L R LL G++++ + W
Sbjct: 53 SDVLPTLALWAGFGVFNTIAYVL----VAREADRLAHGRRATLLTEAFGRIISMPLSWHQ 108
Query: 779 QEDNTSAAICARLATEANVVRSLVGDRMSLLVQ--AIFGSVFSYI-VGLVLSWRLTLVMI 835
Q ++A L T +L G + + Q A F ++F I + WRL++V++
Sbjct: 109 QRGTSNA-----LHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLM 163
Query: 836 AVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLA--SEAVINHRTITAFS---SQKRIL 890
+ L I ++ V+ ++ G+A + S+++ N + +++ ++ L
Sbjct: 164 VLGILYI--LIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSAL 221
Query: 891 GLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTAST---------ALAYWYGGRLLTQEL 941
F L + L W++ +S AST G L E+
Sbjct: 222 KQFTNNLLSAQYPVL--DWWA----LASGLNRMASTISMMCILVIGTVLVIKGELSVGEV 275
Query: 942 ITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNA---VRSVFAILDRRSEIDPDSPQG 998
I F F LL I M+ I++ A + F + D S + P
Sbjct: 276 IA----FIGFANLL-----IGRLDQMSGFITQIFEARAKLEDFFDLED--SVFQREEPAD 324
Query: 999 RDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLE 1058
++G +E +++ F + + +S + +AG+TVA+VG +G GK+T+I LL+
Sbjct: 325 APELPNVKGAVEFRHITFEFANSSQG--VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQ 382
Query: 1059 RFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIK 1118
R YDP G + +D DI + LR IA V Q+ LF +IRENI G+ A + E+
Sbjct: 383 RVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVY 442
Query: 1119 KAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSAL 1178
+AA A AH+FI +GYDT GERG +LSGG++QR+A+ARAILKN IL+LDEATSAL
Sbjct: 443 EAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSAL 502
Query: 1179 DSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRG 1238
D +E+ V+ A++ + RT ++AHRLST++ +D + + GR++E+GS EL+ +
Sbjct: 503 DVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELI--QKD 560
Query: 1239 GAYYSLIKPQG 1249
G +Y L++ G
Sbjct: 561 GRFYKLLRRSG 571
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 211 bits (539), Expect = 4e-62
Identities = 87/224 (38%), Positives = 142/224 (63%), Gaps = 6/224 (2%)
Query: 343 GEIEFRDVYFCYPSRPDT-LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVE 401
G+IEF++V Y RP+ VL+ ++ + G+ VG+VG +GSGKS+ + L R +
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 402 GEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENI-LFGKDGASMDDVISAAKAA 460
G +L+DG I ++ L LRS++ ++ Q+PVLF+ +I N+ FG+ S +++ A +
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE--YSDEELWQALERV 116
Query: 461 NAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER 520
+F+ LP G +T V + G +S GQ+Q + +ARAL+R KIL+LDEAT+++D +++
Sbjct: 117 GLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176
Query: 521 IVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGS 564
++Q+ I + K T L IAHRL TI ++ I+VL G+VVE S
Sbjct: 177 LIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 225 bits (576), Expect = 4e-62
Identities = 170/536 (31%), Positives = 257/536 (47%), Gaps = 44/536 (8%)
Query: 64 TLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTF 123
L LL A+G + L R R + ++ +LR V FF G +
Sbjct: 179 ALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLAS- 237
Query: 124 QVVSTISNDSNSIQVAICEKISN-TLAYLSTFFFCLL---FSFILSWRLSLAALPLTLMF 179
IS I +S TL L + F LL F SW+L+L A+ L L+
Sbjct: 238 -RAMGIS--------QIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVA 288
Query: 180 IVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSN--ALQK 237
I L+ G L + +++E G G+ Q ++ I + AE+ R++ + Q+
Sbjct: 289 IAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQR 348
Query: 238 TMEL---GIKQG---FIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSI--FVAGV 289
+EL I+ F L + + ++ L+ G GS F
Sbjct: 349 KLELSAQRIENLLTVFNAVLPVLTSAALF-------AAAISLLGGAGLSLGSFLAFNTAF 401
Query: 290 SIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRD 349
G ++ L L +I R +++ P +D LS G IE
Sbjct: 402 GSFSGAVTQLSNT--LISILAVIPLWERAKPILEALPEVDEAKTDPGKLS---GAIEVDR 456
Query: 350 VYFCYPSRPDT-LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDG 408
V F Y RPD L+L ++L++ G+ V +VG SGSGKST + LL F P G V DG
Sbjct: 457 VTFRY--RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDG 514
Query: 409 YKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITK 468
+ L ++ +R Q+G+V Q L + SI ENI G ++D+ AA+ A + I
Sbjct: 515 QDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIA-GGAPLTLDEAWEAARMAGLAEDIRA 573
Query: 469 LPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDK 528
+P G T + + G +SGGQ+QR+ IARAL+R P+ILL DEATSALD +++ IV E++++
Sbjct: 574 MPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER 633
Query: 529 VSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQ 584
+ R ++IAHRLSTIR A+ I VL AG+VV+ G+++ELM R G + Q+ Q
Sbjct: 634 LKVTR--IVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR--EGLFAQLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 222 bits (568), Expect = 5e-62
Identities = 113/327 (34%), Positives = 186/327 (56%), Gaps = 18/327 (5%)
Query: 281 GGSIFVAGVSIIMGGLS----VLG-------ALPNLTAITEAKVAA-TRIFEMVDRTPAI 328
GGS V S+ +G L+ LG AL + I E AA +RI M+ P +
Sbjct: 241 GGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVV 300
Query: 329 DTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKST 388
+ + RGE++ F YP D L+ +N + G+ +G+ G +GSGKST
Sbjct: 301 KDGSE---PVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKST 356
Query: 389 TIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGA 448
++L+QR +D EG++ + +L L RS++ +V+Q P LF+ ++ NI G+ A
Sbjct: 357 LLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDA 416
Query: 449 SMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLD 508
+ ++ A+ A+ HD I +LP GY+T+VG+ G +SGGQKQRI+IARAL+ + +IL+LD
Sbjct: 417 TQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILD 476
Query: 509 EATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNEL 568
+A SA+D ++E + + + +GRT +I AHRLS + A+ I+V++ G + + G+H++L
Sbjct: 477 DALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQL 536
Query: 569 MNRGEGGEYYQMVELQQMASENDTSND 595
+ G Y M QQ+ + D + +
Sbjct: 537 AQ--QSGWYRDMYRYQQLEAALDDAPE 561
|
Length = 569 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 221 bits (566), Expect = 8e-62
Identities = 98/301 (32%), Positives = 168/301 (55%), Gaps = 16/301 (5%)
Query: 947 LFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMR 1006
+AF L A+ + + + R + ILD++ E+ Q +
Sbjct: 288 ALEAFEPLAPGAFQ---------HLGQVIASARRLNDILDQKPEVTFPDEQTATTGQA-- 336
Query: 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
+EL+NV F YP + + LK +L + G+ VA++G+SG GKST++ LL +DP +G
Sbjct: 337 --LELRNVSFTYPGQQTK-ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQG 393
Query: 1067 SVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANA 1126
S+ ++ +I + + + LR I++++Q LF+GT+R+N+ DA + E+ A
Sbjct: 394 SITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGL 453
Query: 1127 HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
+ + DG +T+ GE G +LSGG+++R+ALARA+L + + LLDE T LD ++E V
Sbjct: 454 EKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQV 513
Query: 1187 QEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIK 1246
L + G+T ++V HRL +++ D I V+ NG+++E+G+H EL L+ G Y L +
Sbjct: 514 LALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAEL--LANNGRYKRLYQ 571
Query: 1247 P 1247
Sbjct: 572 L 572
|
Length = 573 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 221 bits (566), Expect = 1e-61
Identities = 84/224 (37%), Positives = 137/224 (61%), Gaps = 4/224 (1%)
Query: 1022 PDQMILKG-LSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNL 1080
PD L G L+ + AG+ +ALVG SG GK++++ L F P +GS+ ++ ++R +
Sbjct: 360 PDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDP 418
Query: 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTY 1140
+ R H++ V Q P L GT+R+N+ G DA + ++++A A EF+ + G DT
Sbjct: 419 ESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTP 478
Query: 1141 CGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCV 1200
G++ LS GQ QR+ALARA+L+ +LLLDE T++LD+ SE LV +AL +T +
Sbjct: 479 IGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTL 538
Query: 1201 VVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSL 1244
+V H+L + + D I V+++G++V+QG + EL GG + +L
Sbjct: 539 MVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELS--QAGGLFATL 580
|
Length = 588 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 218 bits (557), Expect = 5e-61
Identities = 93/248 (37%), Positives = 137/248 (55%), Gaps = 4/248 (1%)
Query: 307 AITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGL 366
A + AA +F ++D P + +EF V YP R L+ +
Sbjct: 286 ARADGVAAAEALFAVLDAAPRPLAGKA--PVTAAPAPSLEFSGVSVAYPGRRP--ALRPV 341
Query: 367 NLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLV 426
+ VP G+ V LVG SG+GKST + LL F DP EG + ++G + R Q+ V
Sbjct: 342 SFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWV 401
Query: 427 NQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSG 486
Q P LFA +I ENI + AS ++ A + A +F+ LP G +T +G+ G +SG
Sbjct: 402 PQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSG 461
Query: 487 GQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR 546
GQ QR+A+ARA +RD +LLLDE T+ LDA++E V EA+ +++GRT L++ HRL+
Sbjct: 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAA 521
Query: 547 TANLIMVL 554
A+ I+VL
Sbjct: 522 LADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 217 bits (556), Expect = 2e-60
Identities = 92/305 (30%), Positives = 161/305 (52%), Gaps = 14/305 (4%)
Query: 287 AGVSIIMGGLSVLGALPNLTAITEAKV--------AATRIFEMVDRTPAIDTDDKMGKAL 338
A + L + AL + +A R+ +++D+ P + D+
Sbjct: 274 AQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATT 333
Query: 339 SYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD 398
+E R+V F YP + T L+ NL + G+ V ++G SGSGKST + LL +D
Sbjct: 334 GQA---LELRNVSFTYPGQQ-TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD 389
Query: 399 PVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAK 458
P +G + L+G +I L + LR + ++ Q LF+ ++ +N+ AS +++ +A +
Sbjct: 390 PQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQ 449
Query: 459 AANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS 518
+ PDG T +G+ G ++SGG+++R+A+ARAL+ D + LLDE T LD +
Sbjct: 450 QVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPIT 509
Query: 519 ERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYY 578
ER V + + ++G+T L++ HRL + + I+VL GK++E G+H EL+ G Y
Sbjct: 510 ERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELL--ANNGRYK 567
Query: 579 QMVEL 583
++ +L
Sbjct: 568 RLYQL 572
|
Length = 573 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 219 bits (559), Expect = 6e-60
Identities = 151/481 (31%), Positives = 234/481 (48%), Gaps = 70/481 (14%)
Query: 798 VRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIG-----SYYSRNVLM 852
+R ++ + + ++ + + SW+L LV +A+ + I
Sbjct: 245 IRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLL------ 298
Query: 853 KSMAGKARKAQKEGSQLASEAVINHRTIT----------AFSSQKRILGLFKETLRGPKE 902
K R+ + +++ V I+ AF+ R LF +
Sbjct: 299 --QVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFA---RWAKLFSRQRK---- 349
Query: 903 ESLKHSWYSGIGLFSSQF---FNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAY 959
L+ S I + F ++A + LL ++ F AF TA+
Sbjct: 350 --LELSA-QRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLG-SFLAF----NTAF 401
Query: 960 VIAEAGSMTSDISKGSNAVRSVFA----------ILDRRSEIDPDSPQ-GRDIKRQMRGR 1008
+G++T SN + S+ A IL+ E+D G+ + G
Sbjct: 402 GSF-SGAVTQ----LSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGK-----LSGA 451
Query: 1009 IELKNVFFAYPTRPDQM-ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
IE+ V F Y RPD IL +SL+IE G+ VA+VG SG GKST++ LL F P GS
Sbjct: 452 IEVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGS 509
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAH 1127
VF D QD+ +++ +R + +V Q L +G+I ENIA G A E +AA +A
Sbjct: 510 VFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIA-GGAPLTLDEAWEAARMAGLA 568
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
E I M G T E G LSGGQ+QR+ +ARA+++ P ILL DEATSALD+ ++++V
Sbjct: 569 EDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVS 628
Query: 1188 EALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKP 1247
E+LE++ + R +V+AHRLSTI+ +D I V+ GRVV+QG+++EL+A R G + L +
Sbjct: 629 ESLERLKVTR--IVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA--REGLFAQLARR 684
Query: 1248 Q 1248
Q
Sbjct: 685 Q 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 210 bits (536), Expect = 8e-57
Identities = 151/506 (29%), Positives = 260/506 (51%), Gaps = 38/506 (7%)
Query: 90 ERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNT-- 147
+R + + + Y+K + + FF T+ G ++VS + D++SI A+ I +
Sbjct: 225 QRLSIDIILSYIKHLFELPMSFFSTRRTG-----EIVSRFT-DASSIIDALASTILSLFL 278
Query: 148 -LAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGG 206
+ L L+ +L + LSL ++P+ + V +LF + + +++ V
Sbjct: 279 DMWILVIVGLFLVRQNMLLFLLSLLSIPV---YAVIIILFKRTFNKLNHDAMQANAVLNS 335
Query: 207 IAEQAVSSIRTVYSYVAEHETL----IRFSNALQKTMELGIK---QGFIKGLLMGSMGMI 259
+ ++ I T+ S +E E F + L K+ + Q IK + + ++
Sbjct: 336 SIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVV 395
Query: 260 YVGWAFQAWVGSYLV-TEKGEKGGSI-FVAGVSIIMGGLSVLGALPNL-TAITEAKVAAT 316
+ W G+YLV K G I F A +S L+ L + NL + A+VA
Sbjct: 396 IL------WTGAYLVMRGKLTLGQLITFNALLSYF---LTPLENIINLQPKLQAARVANN 446
Query: 317 RIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSV 376
R+ E V + + K L+ + G+I DV + Y + +L ++L +
Sbjct: 447 RLNE-VYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSN--ILSDISLTIKMNSKT 503
Query: 377 GLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATS 436
+VG SGSGKST LL F+ GE+LL+G+ ++ + LR + + QEP +F+ S
Sbjct: 504 TIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGS 563
Query: 437 ITENILFG-KDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIA 495
I EN+L G K+ S D++ +A + A D I +P GY+T++ + G +SGGQKQRIA+A
Sbjct: 564 ILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALA 623
Query: 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLK 555
RAL+ D K+L+LDE+TS LD +E+ + + + + +T + +AHRLS + ++ I+VL
Sbjct: 624 RALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLD 682
Query: 556 AGKVVESGSHNELMNRGEGGEYYQMV 581
GK++E GSH+EL++R G Y ++
Sbjct: 683 HGKIIEQGSHDELLDR--NGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 2e-55
Identities = 92/269 (34%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 314 AATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAG 373
+A RI E+ ++ P + A + + +V F YP +P VL+GL+L++ AG
Sbjct: 310 SARRINEITEQKPEVTFPTTSTAAAD--QVSLTLNNVSFTYPDQPQP-VLKGLSLQIKAG 366
Query: 374 KSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLF 433
+ V L+G +G GKST + LL R +DP +GE+LL+G I LR + +V+Q LF
Sbjct: 367 EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLF 426
Query: 434 ATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIA 493
+ ++ +N+L AS D+ + + + + G +G+ G Q+SGG+++R+
Sbjct: 427 SATLRDNLLLAAPNAS-DEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLG 485
Query: 494 IARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMV 553
IARAL+ D +LLLDE T LDA++ER + E + + ++ +T L+I HRL+ + + I V
Sbjct: 486 IARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICV 545
Query: 554 LKAGKVVESGSHNELMNRGEGGEYYQMVE 582
+ G+++E G+H EL+ + G YYQ+ +
Sbjct: 546 MDNGQIIEQGTHQELLAQ--QGRYYQLKQ 572
|
Length = 574 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 3e-54
Identities = 102/268 (38%), Positives = 157/268 (58%), Gaps = 10/268 (3%)
Query: 981 VFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTV 1040
VF ++D P G D + GRI++ NV FAY R D ++L+ ++L + + V
Sbjct: 318 VFELMDG-----PRQQYGNDDRPLQSGRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFV 370
Query: 1041 ALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGT 1100
ALVG +G GKST+ LL +Y +G + +D + + + + LR +A+V Q+P + A T
Sbjct: 371 ALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADT 430
Query: 1101 IRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALAR 1160
N+ G+ D E ++ +A E + DG T GE+G LS GQKQ +ALAR
Sbjct: 431 FLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALAR 489
Query: 1161 AILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKN 1220
+++ P IL+LDEAT+ +DS +E +Q+AL + T VV+AHRLSTI ++DTI V+
Sbjct: 490 VLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHR 549
Query: 1221 GRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
G+ VEQG+H +L L+ G Y+ + + Q
Sbjct: 550 GQAVEQGTHQQL--LAAQGRYWQMYQLQ 575
|
Length = 592 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 198 bits (507), Expect = 8e-54
Identities = 80/229 (34%), Positives = 137/229 (59%), Gaps = 4/229 (1%)
Query: 358 PDTLVLQG-LNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHL 416
PD L G LN +PAG+ + LVG SG+GK++ + L F P +G + ++G ++R L
Sbjct: 360 PDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDP 418
Query: 417 KWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQ 476
+ R + V Q P L ++ +N+L G AS + + A + A +F+ LP G +T
Sbjct: 419 ESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTP 478
Query: 477 VGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTL 536
+G +S GQ QR+A+ARAL++ ++LLLDE T++LDA SE++V +A++ S+ +TTL
Sbjct: 479 IGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTL 538
Query: 537 IIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQ 585
++ H+L + + I V++ G++V+ G + EL GG + ++ +Q
Sbjct: 539 MVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQ--AGGLFATLLAHRQ 585
|
Length = 588 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 197 bits (504), Expect = 2e-53
Identities = 108/307 (35%), Positives = 174/307 (56%), Gaps = 20/307 (6%)
Query: 269 VGSYLVTEKGEKGGSIFVAGVSIIMGGL--SVLGALPNLTAITEAKVAATRIFEMVDRTP 326
+G++LV KGE + +AG SI+ G + A+ N A+ + R+ E++ P
Sbjct: 263 LGAWLVI-KGEITPGMMIAG-SILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELP 320
Query: 327 AIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGK 386
A ++M L +G + + P + +L+G++ + AG+++G++G SGSGK
Sbjct: 321 A--AAERM--PLPAPQGALSVERLTAAPPGQK-KPILKGISFALQAGEALGIIGPSGSGK 375
Query: 387 STTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM----GLVNQEPVLFATSITENIL 442
ST LL + P G V LDG +R+ W R Q+ G + Q+ LF +I ENI
Sbjct: 376 STLARLLVGIWPPTSGSVRLDGADLRQ----WDREQLGRHIGYLPQDVELFDGTIAENIA 431
Query: 443 -FGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501
FG++ A + VI AA+ A H+ I +LP GY+T++G+ G +SGGQ+QRIA+ARAL D
Sbjct: 432 RFGEE-ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGD 490
Query: 502 PKILLLDEATSALDAQSERIVQEAIDKV-SKGRTTLIIAHRLSTIRTANLIMVLKAGKVV 560
P +++LDE S LD++ E + AI ++G T ++IAHR S + + + I+VL+ G++
Sbjct: 491 PFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIA 550
Query: 561 ESGSHNE 567
G E
Sbjct: 551 AFGPREE 557
|
Length = 580 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 3e-53
Identities = 100/294 (34%), Positives = 162/294 (55%), Gaps = 10/294 (3%)
Query: 269 VGSYLVTEKGEKGGSIFVAGVSIIMG-GLS-VLGALPNLTAITEAKVAATRIFEMVDRTP 326
+G+YL GE + +AG SI++G L+ + GA+ + A+ A R+ E++ P
Sbjct: 245 LGAYLAI-DGEITPGMMIAG-SILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYP 302
Query: 327 AIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGK 386
+ D M L G + +V P L+G++ + AG+++ ++G SGSGK
Sbjct: 303 S--RDPAM--PLPEPEGHLSVENVTIVPPG-GKKPTLRGISFSLQAGEALAIIGPSGSGK 357
Query: 387 STTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKD 446
ST L+ + P G V LDG +++ + +G + Q+ LF ++ ENI +
Sbjct: 358 STLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGE 417
Query: 447 GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILL 506
A + +I AAK A H+ I +LPDGY+T +G G +SGGQ+QRIA+ARAL DPK+++
Sbjct: 418 NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV 477
Query: 507 LDEATSALDAQSERIVQEAIDKVSK-GRTTLIIAHRLSTIRTANLIMVLKAGKV 559
LDE S LD + E+ + AI + G T ++I HR S + + I+VL+ G++
Sbjct: 478 LDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRI 531
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 195 bits (498), Expect = 5e-53
Identities = 87/219 (39%), Positives = 138/219 (63%), Gaps = 1/219 (0%)
Query: 1016 FAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDI 1075
F YP D L+ ++ ++ G+ + + G +G GKST++ L++R +D +G + + +
Sbjct: 321 FTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL 379
Query: 1076 RNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKD 1135
L RS +A+VSQ P LF+ T+ NIA G+ DA + EI+ A LA+ H+ I +
Sbjct: 380 TKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQ 439
Query: 1136 GYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM 1195
GYDT GERGV LSGGQKQRI++ARA+L N IL+LD+A SA+D +E + L +
Sbjct: 440 GYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE 499
Query: 1196 GRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVA 1234
GRT ++ AHRLS + ++ I V+++G + ++G+H++L
Sbjct: 500 GRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 192 bits (491), Expect = 7e-52
Identities = 94/230 (40%), Positives = 139/230 (60%), Gaps = 2/230 (0%)
Query: 1006 RGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLK 1065
+G + ++ + A P + + ILKG+S ++AG+ + ++G SG GKST+ LL + P
Sbjct: 332 QGALSVERLTAAPPGQK-KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS 390
Query: 1066 GSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLAN 1125
GSV +D D+R ++ +QL HI + Q+ LF GTI ENIA +A ++ +AA LA
Sbjct: 391 GSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAG 450
Query: 1126 AHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL 1185
HE I + GYDT GE G LSGGQ+QRIALARA+ +P +++LDE S LDS E+
Sbjct: 451 VHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA 510
Query: 1186 VQEALEKM-MMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVA 1234
+ A+ G T VV+AHR S + D I V+++GR+ G E++A
Sbjct: 511 LAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA 560
|
Length = 580 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 2e-50
Identities = 88/230 (38%), Positives = 135/230 (58%), Gaps = 2/230 (0%)
Query: 1006 RGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLK 1065
G + ++NV P + L+G+S ++AG+ +A++G SG GKST+ L+ + P
Sbjct: 314 EGHLSVENVTIV-PPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTS 372
Query: 1066 GSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLAN 1125
GSV +D D++ ++ + HI + Q+ LF GT+ ENIA +A +I +AA LA
Sbjct: 373 GSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAG 432
Query: 1126 AHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL 1185
HE I + DGYDT G G LSGGQ+QRIALARA+ +P +++LDE S LD E
Sbjct: 433 VHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQA 492
Query: 1186 VQEALEKM-MMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVA 1234
+ A++ + G T VV+ HR S + D I V+++GR+ G +E++A
Sbjct: 493 LANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 2e-49
Identities = 88/247 (35%), Positives = 140/247 (56%), Gaps = 4/247 (1%)
Query: 298 VLGALPN-LTAITEAKVAATRIFEMVD-RTPAIDTDDKMGKALSYVRGEIEFRDVYFCYP 355
ALP +T + AA RI E++D P + A+ + +E RD+ YP
Sbjct: 286 AFAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYP 345
Query: 356 SRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH 415
VL G++L +P G+ V ++G SGSGKST +A L DP++GEV LDG + L
Sbjct: 346 --GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLD 403
Query: 416 LKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYET 475
+R ++ + Q+ LF T++ EN+ + A+ +++ +A + D++ LPDG +T
Sbjct: 404 QDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDT 463
Query: 476 QVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTT 535
+G+ G ++SGG++QR+A+ARAL+ D ILLLDE T LDA++ + E + GRT
Sbjct: 464 VLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTV 523
Query: 536 LIIAHRL 542
++I H L
Sbjct: 524 VLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 3e-49
Identities = 96/248 (38%), Positives = 144/248 (58%), Gaps = 6/248 (2%)
Query: 999 RDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLE 1058
R + G I + +V ++Y + IL +SL I+ +VG SG GKST+ LL
Sbjct: 464 RTELNNLNGDIVINDVSYSYGYGSN--ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLV 521
Query: 1059 RFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYG-KADARESEI 1117
F+ G + ++ +++ + LR I + QEP +F+G+I EN+ G K + + EI
Sbjct: 522 GFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEI 581
Query: 1118 KKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSA 1177
A +A + I M GY T E G +SGGQKQRIALARA+L + +L+LDE+TS
Sbjct: 582 WAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSN 641
Query: 1178 LDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSR 1237
LD+++E + L + +T + VAHRLS ++SD I V+ +G+++EQGSH+EL L R
Sbjct: 642 LDTITEKKIVNNLLN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDEL--LDR 698
Query: 1238 GGAYYSLI 1245
G Y SLI
Sbjct: 699 NGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 1e-48
Identities = 75/220 (34%), Positives = 112/220 (50%), Gaps = 52/220 (23%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPL 1064
+E++NV F YP + +L+ +S IE G+++A++G SG GKST I+GLL P
Sbjct: 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR----PT 55
Query: 1065 KGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLA 1124
G V +D DI ++ +L H+ + Q+ LF+G+I ENI
Sbjct: 56 SGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------- 96
Query: 1125 NAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSES 1184
LSGGQ+QR+ LARA+ NP IL+LDE S LD E
Sbjct: 97 -----------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGER 133
Query: 1185 LVQEALEKM-MMGRTCVVVAHRLSTIQKSDTIAVIKNGRV 1223
+ +A+ + G T +V+AHR T+ +D I V+++GRV
Sbjct: 134 ALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 4e-48
Identities = 82/239 (34%), Positives = 130/239 (54%), Gaps = 27/239 (11%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----P 1063
IEL+++ Y + LK +SL I G+ AL+G SGCGKST++ LL R D P
Sbjct: 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 1064 LKGSVFMDEQDIR--NYNLKQLRSHIALVSQEPTLFAGTIRENIAYG-------KADARE 1114
+G V +D +DI + ++ +LR + +V Q+P F G+I +N+AYG + +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 1115 SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEA 1174
+++A A + +KD LSGGQ+QR+ LARA+ P +LLLDE
Sbjct: 118 ERVEEALRKAALWD---EVKDRLHAL------GLSGGQQQRLCLARALANEPEVLLLDEP 168
Query: 1175 TSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
TSALD +S + ++E + ++ T V+V H + + +D A + NGR+VE G ++
Sbjct: 169 TSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 3e-47
Identities = 67/219 (30%), Positives = 118/219 (53%), Gaps = 41/219 (18%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+ + NV F+YP + +Q +LK LSL+++ G+ +AL+G+SG GKST++ LL P +G +
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHE 1128
+D + + K L S I++++Q P LF T+R N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 1129 FISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQE 1188
G + SGG++QR+ALAR +L++ I+LLDE T LD ++E +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 1189 ALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQG 1227
+ +++ +T + + H L+ I+ D I ++NG+++ QG
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 166 bits (421), Expect = 1e-46
Identities = 81/224 (36%), Positives = 129/224 (57%), Gaps = 24/224 (10%)
Query: 1007 GRIELKNVFFAYPTRPD-QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLK 1065
G IE++N+ Y PD +LK +S K++AG+ + +VG++G GKST+I L RF + +
Sbjct: 5 GEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 1066 GSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENI-AYGKADARESEIKKAAVLA 1124
G + +D DI L+ LRS + ++ Q+PTLF+GTIR N+ + + + EI A ++
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYS--DEEIYGALRVS 120
Query: 1125 NAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSES 1184
E G+ LS GQ+Q + LARA+LK P +L+LDEAT+++D +++
Sbjct: 121 ------------------EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 1185 LVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGS 1228
L+Q+ + + T + +AHRL TI D I V+ G V E
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 4e-46
Identities = 108/422 (25%), Positives = 187/422 (44%), Gaps = 40/422 (9%)
Query: 808 LLVQAIFGSVFSYIVGL-------VLSWRLTLVMIA-------VQPLVIGSYYSRNVLMK 853
L V+ I + + +VG VLS L++ A V PLV ++
Sbjct: 126 LYVRVIVPAGVALVVGAAAVAAIAVLSVPAALILAAGLLLAGFVAPLV-------SLRAA 178
Query: 854 SMAGKARKAQKEG-SQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSG 912
A +A + + ++A+ + A + L +E R + + +
Sbjct: 179 RAAEQALARLRGELAAQLTDALDGAAELVASGALPAALAQVEEADRELTRAERRAAAATA 238
Query: 913 IGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDIS 972
+G + + A W GG + + P +L+ EA + +
Sbjct: 239 LGAALTLLAAGLAVLGALWAGGPAVADGRLAP----VTLAVLVLLPLAAFEA---FAALP 291
Query: 973 KGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRG--------RIELKNVFFAYPTRPDQ 1024
+ + V A +R E+ D+ +EL+++ YP
Sbjct: 292 AAAQQLTRVRAAAERIVEV-LDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYP--GAP 348
Query: 1025 MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLR 1084
+L G+SL + G+ VA++G SG GKST++ L DPL+G V +D + + + ++R
Sbjct: 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVR 408
Query: 1085 SHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGER 1144
+++ +Q+ LF T+REN+ + DA + E+ A +++ + DG DT GE
Sbjct: 409 RRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEG 468
Query: 1145 GVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAH 1204
G +LSGG++QR+ALARA+L + ILLLDE T LD+ + + E L + GRT V++ H
Sbjct: 469 GARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITH 528
Query: 1205 RL 1206
L
Sbjct: 529 HL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 163 bits (416), Expect = 1e-45
Identities = 86/240 (35%), Positives = 127/240 (52%), Gaps = 29/240 (12%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----P 399
IE RD+ Y + L+ ++L +P G+ L+G SG GKST + LL R D P
Sbjct: 1 IELRDLNVYYGDKH---ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 400 VEGEVLLDGYKIR--RLHLKWLRSQMGLVNQEPVLFATSITENILFG------KDGASMD 451
EGEVLLDG I + + LR ++G+V Q+P F SI +N+ +G K +D
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 452 DVISAA--KAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDE 509
+ + A KAA L D E + +SGGQ+QR+ +ARAL +P++LLLDE
Sbjct: 118 ERVEEALRKAA--------LWD--EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDE 167
Query: 510 ATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNEL 568
TSALD S ++E I ++ K T +I+ H + R A+ L G++VE G ++
Sbjct: 168 PTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 4e-45
Identities = 79/225 (35%), Positives = 122/225 (54%), Gaps = 32/225 (14%)
Query: 1009 IELKNVFFAYPTRPDQ--MILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYD 1062
I +++ F + + + LK ++L++ G+ VA+VG G GKS+ ++G LE+
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK--- 57
Query: 1063 PLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKA-DAR--ESEIKK 1119
L GSV + IA VSQEP + GTIRENI +GK D E IK
Sbjct: 58 -LSGSVSV-------------PGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKA 103
Query: 1120 AAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD 1179
A+ + + + DG T GE+G+ LSGGQKQRI+LARA+ + I LLD+ SA+D
Sbjct: 104 CALEPD----LEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159
Query: 1180 S-VSESLVQEAL-EKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGR 1222
+ V + + + ++ +T ++V H+L + +D I V+ NGR
Sbjct: 160 AHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 8e-45
Identities = 72/216 (33%), Positives = 107/216 (49%), Gaps = 44/216 (20%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+E +V F YP + VL+ ++ + G+S+ ++G SGSGKST L+ P G V
Sbjct: 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHD 464
LDG I + L +G + Q+ LF+ SI ENIL
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL---------------------- 97
Query: 465 FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE 524
SGGQ+QR+ +ARAL +P+IL+LDE S LD + ER + +
Sbjct: 98 --------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 525 AIDKVSK-GRTTLIIAHRLSTIRTANLIMVLKAGKV 559
AI + G T ++IAHR T+ +A+ I+VL+ G+V
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 156 bits (398), Expect = 7e-43
Identities = 83/251 (33%), Positives = 127/251 (50%), Gaps = 40/251 (15%)
Query: 1004 QMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP 1063
IE++++ Y D+ LK ++L I K AL+G SGCGKST++ L R D
Sbjct: 3 MKIPAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDL 59
Query: 1064 -----LKGSVFMDEQDIRNY--NLKQLRSHIALVSQEPTLFAGTIRENIAYG-----KAD 1111
++G V +D ++I + ++ +LR + +V Q+P F +I +N+AYG D
Sbjct: 60 IPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKD 119
Query: 1112 ARESEI-----KKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNP 1166
EI KKAA L + +KD + LSGGQ+QR+ +ARA+ P
Sbjct: 120 KELDEIVESSLKKAA-LWDE------VKDRLHKS----ALGLSGGQQQRLCIARALAVKP 168
Query: 1167 SILLLDEATSALDSVS----ESLVQEALEKMMMGRTCVVVAHRLS-TIQKSDTIAVIKNG 1221
+LL+DE TSALD +S E L+ E +K T V+V H + + SD A G
Sbjct: 169 EVLLMDEPTSALDPISTLKIEELITELKKKY----TIVIVTHNMQQAARVSDYTAFFYLG 224
Query: 1222 RVVEQGSHNEL 1232
+VE G +++
Sbjct: 225 ELVEFGPTDKI 235
|
Length = 253 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 8e-43
Identities = 84/231 (36%), Positives = 119/231 (51%), Gaps = 29/231 (12%)
Query: 1009 IELKNVFFAYPTRPDQM-ILKGLSLKIEAGKTVALVGQSGCGKST---IIGLLERFYDPL 1064
IELKN+ Y +++ LKG+SL IE G+ VA+VG SG GKST I+G L+R P
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 1065 KGSVFMDEQDIRNYNLKQL----RSHIALVSQE----PTLFAGTIRENIAYGKADARESE 1116
G V +D DI + K+L R HI V Q P L T EN+ +
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL---TALENVELP---LLLAG 111
Query: 1117 IKKAAVLANAHEFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEA 1174
+ K A E + G+ D + Y +LSGGQ+QR+A+ARA+ +P I+L DE
Sbjct: 112 VPKKERRERAEELLERVGLGDRLNHYPS----ELSGGQQQRVAIARALANDPKIILADEP 167
Query: 1175 TSALDSVSESLVQEALEKM--MMGRTCVVVAHRLSTIQKSDTIAVIKNGRV 1223
T LDS + V E L ++ G T VVV H + +D I +++G++
Sbjct: 168 TGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 1e-42
Identities = 74/241 (30%), Positives = 121/241 (50%), Gaps = 30/241 (12%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
+E++N+ F Y +P IL LS I G+ ++G +G GKST++ L P G
Sbjct: 2 MLEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE 58
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKA----------DARESE 1116
V +D +DI + + K+L +A V Q P+ G T+ E + G+ E
Sbjct: 59 VLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI 118
Query: 1117 IKKAAVLANAHEFISGMKDGYDTYCGERGV-QLSGGQKQRIALARAILKNPSILLLDEAT 1175
+++A L +R V +LSGG++QR+ +ARA+ + ILLLDE T
Sbjct: 119 VEEALELLGLEHLA------------DRPVDELSGGERQRVLIARALAQETPILLLDEPT 166
Query: 1176 SALDSVSESLVQEALEKMMM--GRTCVVVAHRLS-TIQKSDTIAVIKNGRVVEQGSHNEL 1232
S LD + V E L + G T V+V H L+ + +D + ++K+G++V QG+ E+
Sbjct: 167 SHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEV 226
Query: 1233 V 1233
+
Sbjct: 227 L 227
|
Length = 258 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 1e-42
Identities = 79/219 (36%), Positives = 115/219 (52%), Gaps = 14/219 (6%)
Query: 346 EFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVL 405
E +++ F YP L ++L + G+ V +VG +GSGKST + LL P GEVL
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 406 LDGYKIRRLHLKWLRSQMGLVNQEP--VLFATSITENILFG--KDGASMDDVISAAKAAN 461
+DG + +L LK LR ++GLV Q P F ++ E + FG G +++ + A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 462 AHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERI 521
+ L D + F +SGGQKQR+AIA L DP ILLLDE T+ LD R
Sbjct: 120 ELVGLEGLRD-------RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 522 VQEAIDKVSKGRTTLIIA-HRLSTIRT-ANLIMVLKAGK 558
+ E + K+ T+II H L + A+ ++VL+ GK
Sbjct: 173 LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 2e-42
Identities = 72/219 (32%), Positives = 110/219 (50%), Gaps = 41/219 (18%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+ +V F YP + + VL+ L+L + G+ + L+G SGSGKST + LL P +GE+
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHD 464
LDG + L K L S + ++NQ P LF T++ N
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNN------------------------ 94
Query: 465 FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE 524
LG + SGG++QR+A+AR L++D I+LLDE T LD +ER +
Sbjct: 95 ---------------LGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 525 AIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESG 563
I +V K +T + I H L+ I + I+ L+ GK++ G
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 5e-42
Identities = 77/219 (35%), Positives = 121/219 (55%), Gaps = 14/219 (6%)
Query: 1010 ELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVF 1069
ELKN+ F+YP + L +SL I+ G+ V +VG +G GKST++ LL P G V
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 1070 MDEQDIRNYNLKQLRSHIALVSQEPT--LFAGTIRENIAYG--KADARESEIKKAAVLAN 1125
+D +D+ +LK+LR + LV Q P F T+ E +A+G E EI++ A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 1126 AHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL 1185
+ G++D + LSGGQKQR+A+A + +P ILLLDE T+ LD
Sbjct: 120 ELVGLEGLRD-RSPF------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 1186 VQEALEKMM-MGRTCVVVAHRLSTI-QKSDTIAVIKNGR 1222
+ E L+K+ G+T ++V H L + + +D + V+++G+
Sbjct: 173 LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 6e-42
Identities = 76/220 (34%), Positives = 112/220 (50%), Gaps = 48/220 (21%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+ELKNV Y + +L +SL IEAG+ VAL+G SG GKST++ + +P GS+
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 1069 FMDEQDIR--NYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLAN 1125
+D +D+ L LR I +V Q+ LF T+ ENIA G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 1126 AHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL 1185
LSGGQ+QR+ALARA+ +P +LLLDE TSALD ++
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 1186 VQEALEKM--MMGRTCVVVAHRLSTIQK-SDTIAVIKNGR 1222
V+ L+ + +G T V+V H L + +D + V+++G+
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 7e-42
Identities = 84/229 (36%), Positives = 129/229 (56%), Gaps = 14/229 (6%)
Query: 1009 IELKNVFFAYPTRPDQMI--LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
IEL+NV + + L +SL+I G+ ++G SG GKST++ L+ P G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1067 SVFMDEQDIRNYN---LKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAV 1122
SVF+D QD+ + L+QLR I ++ Q L + T+ EN+A+ A + +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 1123 LANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVS 1182
+A E + G+ D D Y QLSGGQKQR+A+ARA+ NP ILL DEATSALD +
Sbjct: 122 VAELLELV-GLSDKADRY----PAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET 176
Query: 1183 ESLVQEALEKM--MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGS 1228
+ E L+ + +G T V++ H + +++ D +AV+ GR+VE+G+
Sbjct: 177 TQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225
|
Length = 339 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 1e-41
Identities = 84/239 (35%), Positives = 126/239 (52%), Gaps = 23/239 (9%)
Query: 1009 IELKNVFFAYPTRPDQMI-LKGLSLKIEAGKTVALVGQSGCGKST---IIGLLERFYDPL 1064
IELKNV + ++ LK +SL + G+ ++G+SG GKST I LER P
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PT 58
Query: 1065 KGSVFMDEQDI---RNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKA 1120
GSV +D D+ L++ R I ++ Q L + T+ EN+A A KA
Sbjct: 59 SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVP---KA 115
Query: 1121 AVLANAHEFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSAL 1178
+ E + G++D D Y QLSGGQKQR+ +ARA+ NP +LL DEATSAL
Sbjct: 116 EIEERVLELLELVGLEDKADAYPA----QLSGGQKQRVGIARALANNPKVLLCDEATSAL 171
Query: 1179 DSVSESLVQEALEKM--MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
D + + L + +G T V++ H + +++ D +AV++ G VVE+G+ E+ A
Sbjct: 172 DPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 2e-41
Identities = 91/193 (47%), Positives = 132/193 (68%), Gaps = 12/193 (6%)
Query: 402 GEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAAN 461
G++LLDG I +LK LR+ +V+QEP+LF SI ENI FGK+ A+ +DV A K A
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAA 1336
Query: 462 AHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERI 521
+FI LP+ Y+T VG G +SGGQKQRIAIARAL+R+PKILLLDEATS+LD+ SE++
Sbjct: 1337 IDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKL 1396
Query: 522 VQEAI----DKVSKGRTTLIIAHRLSTIRTANLIMVL----KAGKVVES-GSHNELMNRG 572
+++ I DK K T + IAHR+++I+ ++ I+V + G V++ G+H EL++
Sbjct: 1397 IEKTIVDIKDKADK--TIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS-V 1453
Query: 573 EGGEYYQMVELQQ 585
+ G Y + V+L +
Sbjct: 1454 QDGVYKKYVKLAK 1466
|
Length = 1466 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (382), Expect = 4e-41
Identities = 82/224 (36%), Positives = 123/224 (54%), Gaps = 16/224 (7%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
IE K V + + + ILK +S+K E G +VG SG GKST+I L+ R DP +GS
Sbjct: 3 EIEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAH 1127
+ +D DI+ ++ LR I +V Q+P LF GT+++NI YG E + L+
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLS--- 116
Query: 1128 EFISGMKDGYDTYCGERGVQ-LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
I G+ Y T R V+ LSGG+ QR+++AR + NP +LLLDE TSALD S ++
Sbjct: 117 --IVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII 170
Query: 1187 QEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227
+E + K+ M T + + H + ++ D A + G +VE
Sbjct: 171 EELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 7e-41
Identities = 89/241 (36%), Positives = 148/241 (61%), Gaps = 8/241 (3%)
Query: 342 RGEIEFRDVYFCYPSRPD-TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV 400
RG +EFR+ +C R D LVL+ +N+ + G+ VG+VG +G+GKS+ L R +
Sbjct: 1282 RGRVEFRN--YCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339
Query: 401 EGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENI-LFGKDGASMDDVISAAKA 459
EGE+++DG I ++ L LR ++ ++ Q+PVLF+ S+ N+ F + S ++V A +
Sbjct: 1340 EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQ--YSDEEVWWALEL 1397
Query: 460 ANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE 519
A+ F++ LPD + + + G +S GQ+Q + +ARAL+R KIL+LDEAT+A+D +++
Sbjct: 1398 AHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD 1457
Query: 520 RIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQ 579
++Q I + T L IAHRL+TI ++VL G+V E G+ + L+ + G +Y
Sbjct: 1458 NLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ--QRGIFYS 1515
Query: 580 M 580
M
Sbjct: 1516 M 1516
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 149 bits (380), Expect = 1e-40
Identities = 74/237 (31%), Positives = 125/237 (52%), Gaps = 28/237 (11%)
Query: 1009 IELKNVFFAYPTRPDQM-ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
+E+KN+ ++PT + L +S I+ G+T+ LVG+SG GKST+ + P GS
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1068 VFMDEQDIRNYNLKQL---RSHIALVSQE------PTLFAGTIRENIA-----YGKADAR 1113
+ D +D+ + + R I +V Q+ P + TI E IA +GK +
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM---TIGEQIAEPLRIHGKLSKK 118
Query: 1114 ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDE 1173
E+ + +L + + Y +LSGGQ+QR+A+ARA+ NP +L+ DE
Sbjct: 119 EARKEAVLLLLVGVGLPEEVLNRYPH-------ELSGGQRQRVAIARALALNPKLLIADE 171
Query: 1174 ATSALDSVSESLVQEALEKM--MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227
TSALD ++ + + L+K+ +G T + + H L + K +D +AV+ G++VE+G
Sbjct: 172 PTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 1e-40
Identities = 85/248 (34%), Positives = 127/248 (51%), Gaps = 43/248 (17%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD----- 1062
IE N+F+ ++ LK ++L I + AL+G SGCGKST++ L R D
Sbjct: 3 EIENLNLFYG-----EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV 57
Query: 1063 PLKGSVFMDEQDI--RNYNLKQLRSHIALVSQEPTLFAGTIRENIAYG--------KADA 1112
++G V D QDI + ++ +LR + +V Q+P F +I +NIAYG K +
Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 1113 R---ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSIL 1169
E +KKAA L + +KD + LSGGQ+QR+ +ARA+ P +L
Sbjct: 118 DEIVEESLKKAA-LWDE------VKDRLHDS----ALGLSGGQQQRLCIARALAVEPEVL 166
Query: 1170 LLDEATSALDSVS----ESLVQEALEKMMMGRTCVVVAHRLS-TIQKSDTIAVIKNGRVV 1224
LLDE TSALD ++ E L+QE +K T V+V H + + SD A +G +V
Sbjct: 167 LLDEPTSALDPIATGKIEELIQELKKKY----TIVIVTHNMQQAARISDRTAFFYDGELV 222
Query: 1225 EQGSHNEL 1232
E G ++
Sbjct: 223 EYGPTEQI 230
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 2e-40
Identities = 79/242 (32%), Positives = 126/242 (52%), Gaps = 32/242 (13%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPL 1064
IEL+ + ++ R +LKG+ L + G+ +A++G SG GKST I+GLL P
Sbjct: 1 IELRGLTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR----PD 53
Query: 1065 KGSVFMDEQDIRNYN---LKQLRSHIALVSQEPTLFAG-TIRENIAY-----GKADARES 1115
G V +D +DI + L +LR + ++ Q LF T+ EN+A+ + E
Sbjct: 54 SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEI 113
Query: 1116 EIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEAT 1175
L G++ D Y E LSGG K+R+ALARA+ +P +LL DE T
Sbjct: 114 REIVLEKLEAV-----GLRGAEDLYPAE----LSGGMKKRVALARALALDPELLLYDEPT 164
Query: 1176 SALDSVSESLVQEALE--KMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
+ LD ++ ++ + + K +G T ++V H L T +D IAV+ +G++V +G+ EL
Sbjct: 165 AGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
Query: 1233 VA 1234
A
Sbjct: 225 RA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 2e-40
Identities = 75/240 (31%), Positives = 122/240 (50%), Gaps = 16/240 (6%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IE R++ Y D L G++ V G+ GL+G +G+GK+T + +L P GE+
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAH 463
L+ GY + + K R ++G V QEP L+ ++ EN+ F A + +
Sbjct: 63 LVLGYDVVKEPAKV-RRRIGYVPQEPSLYPELTVRENLEFF---ARLYGLSKEEAEERIE 118
Query: 464 DFITK--LPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERI 521
+ + L D +V L SGG KQR++IA AL+ DP++L+LDE TS LD +S R
Sbjct: 119 ELLELFGLEDKANKKVRTL----SGGMKQRLSIALALLHDPELLILDEPTSGLDPESRRE 174
Query: 522 VQEAIDKVSK--GRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNRGEGGEYY 578
+ E + +++K G T L+ H L + +++L GK++ G+ EL + G
Sbjct: 175 IWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVI 234
|
Length = 293 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 2e-40
Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 26/233 (11%)
Query: 1009 IELKNVFFAYPTRPDQ-MILKGLSLKIEAGKTVALVGQSGCGKST---IIGLLERFYDPL 1064
IELKNV Y ++ LK ++L+IEAG+ VA+VG SG GKST ++G L++ P
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PT 58
Query: 1065 KGSVFMDEQDIRNYNLKQL----RSHIALVSQEPTLFAG-TIRENIA----YGKADARES 1115
G V ++ +D+ + K+L R I V Q L T+ EN+ A
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 1116 EIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEAT 1175
+ +L + G++D + +LSGGQ+QR+A+ARA++ NP I+L DE T
Sbjct: 119 KRAAEELLE-----VLGLEDRLLKK---KPSELSGGQQQRVAIARALINNPKIILADEPT 170
Query: 1176 SALDSVSESLVQEALEKM--MMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQ 1226
LDS + V E L ++ G+T ++V H + +D + +K+G++ E+
Sbjct: 171 GNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 3e-40
Identities = 72/230 (31%), Positives = 113/230 (49%), Gaps = 29/230 (12%)
Query: 345 IEFRDVYFCYPSRPDTL-VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403
+E R+V Y + L+ ++L V G+ V LVG SG GKST + ++ P GE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 404 VLLDGYKIRRLHLKWLRSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANA 462
VL+DG + G V Q+ L ++ +N+ G + + A A
Sbjct: 61 VLVDGEPVTGPG-----PDRGYVFQQDALLPWLTVLDNVALGLELQGVPK---AEARERA 112
Query: 463 HDFITKLPDGYETQVGQLGF------QMSGGQKQRIAIARALIRDPKILLLDEATSALDA 516
+ + VG GF Q+SGG +QR+A+ARAL DP +LLLDE SALDA
Sbjct: 113 EELLEL--------VGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 517 QSERIVQEAIDKVSK--GRTTLIIAHRLS-TIRTANLIMVLKA--GKVVE 561
+ +QE + + + G+T L++ H + + A+ ++VL A G++V
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 1e-39
Identities = 78/223 (34%), Positives = 128/223 (57%), Gaps = 22/223 (9%)
Query: 343 GEIEFRDVYFCY-PSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVE 401
GEIE ++ Y P P VL+ ++ +V AG+ +G+VG +G+GKST I L RF + E
Sbjct: 5 GEIEVENLSVRYAPDLPP--VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 402 GEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAAN 461
G++ +DG I + L+ LRS + ++ Q+P LF+ +I N L D S +++ A +
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSN-LDPFDEYSDEEIYGALR--- 118
Query: 462 AHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERI 521
V + G +S GQ+Q + +ARAL++ P++L+LDEAT+++D ++ +
Sbjct: 119 ---------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 522 VQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGS 564
+Q+ I + T L IAHRL TI + I+V+ AG+V E
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 1e-39
Identities = 78/221 (35%), Positives = 114/221 (51%), Gaps = 24/221 (10%)
Query: 345 IEFRDVYFCYPSRPDT--LVLQGLNLRVPAGKSVGLVGGSGSGKSTTI-ALLQRFYDPVE 401
I D F + S L+ +NL VP G+ V +VG GSGKS+ + ALL + +
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL-EKLS 59
Query: 402 GEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGK--DGASMDDVISAAKA 459
G V + + V+QEP + +I ENILFGK D + VI A
Sbjct: 60 GSV-------------SVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKAC-- 104
Query: 460 ANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ-S 518
A D + LPDG T++G+ G +SGGQKQRI++ARA+ D I LLD+ SA+DA
Sbjct: 105 ALEPD-LEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVG 163
Query: 519 ERIVQEAI-DKVSKGRTTLIIAHRLSTIRTANLIMVLKAGK 558
I + I + +T +++ H+L + A+ I+VL G+
Sbjct: 164 RHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 1e-39
Identities = 79/233 (33%), Positives = 124/233 (53%), Gaps = 13/233 (5%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
IE +N+ F YP R LK +SL+IE G+ V L+G +G GKST++ LL P G
Sbjct: 3 MIEAENLSFRYPGRKA--ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60
Query: 1068 VFMDEQDIRN-YNLKQLRSHIALVSQEPT--LFAGTIRENIAYGKADARESEIKKAAVLA 1124
V +D D + +L +LR + LV Q P LF T+ + +A+G + + +A
Sbjct: 61 VLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVA 120
Query: 1125 NAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSES 1184
A E + G+++ D LSGGQKQR+A+A + P ILLLDE T+ LD
Sbjct: 121 EALE-LVGLEELLDRPPFN----LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175
Query: 1185 LVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
+ E L+K+ G+T ++V H L + + +D + V+ +G+++ G E+
Sbjct: 176 ELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 144 bits (367), Expect = 4e-39
Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 21/227 (9%)
Query: 1009 IELKNVFFAYPT-RPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
+E++NV Y L+ +SL +E G+ VALVG SGCGKST++ ++ P G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPTLFA-GTIRENIAYGKADARESEIKKAAVLANA 1126
V +D + + V Q+ L T+ +N+A G + KA A
Sbjct: 61 VLVDGEPVT-----GPGPDRGYVFQQDALLPWLTVLDNVALG---LELQGVPKAEARERA 112
Query: 1127 HEFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSES 1184
E + G+ + Y QLSGG +QR+ALARA+ +P +LLLDE SALD+++
Sbjct: 113 EELLELVGLSGFENAYPH----QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTRE 168
Query: 1185 LVQEALEKMM--MGRTCVVVAHRLS-TIQKSDTIAVIKN--GRVVEQ 1226
+QE L + G+T ++V H + + +D + V+ GR+V +
Sbjct: 169 QLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 4e-39
Identities = 90/242 (37%), Positives = 146/242 (60%), Gaps = 7/242 (2%)
Query: 343 GEIEFRDVYFCYPSRPD-TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVE 401
G I+F DV Y RP+ VL GL+ + + VG+VG +G+GKS+ + L R +
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 402 GEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENI-LFGKDGASMDDVISAAKAA 460
G +L+DG I + L LR +G++ Q PVLF+ ++ N+ F + + D+ + + A
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDA--DLWESLERA 1351
Query: 461 NAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER 520
+ D I + G + +V + G S GQ+Q +++ARAL+R KIL+LDEAT+A+D +++
Sbjct: 1352 HLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDA 1411
Query: 521 IVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQM 580
++Q+ I + K T LIIAHRL+TI + I+VL AG+VVE + L++ EG + +M
Sbjct: 1412 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSN-EGSAFSKM 1470
Query: 581 VE 582
V+
Sbjct: 1471 VQ 1472
|
Length = 1622 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 5e-39
Identities = 78/223 (34%), Positives = 121/223 (54%), Gaps = 14/223 (6%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+ELK + Y L LSL +E G+ +AL+G SGCGK+T++ L+ P G +
Sbjct: 1 LELKGLSKTYG---SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAH 1127
+D +D+ + R +I +V Q+ LF T+ ENIA+G + + KA + A
Sbjct: 58 LIDGRDV--TGVPPERRNIGMVFQDYALFPHLTVAENIAFG---LKLRGVPKAEIRARVR 112
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
E + + G + +LSGGQ+QR+ALARA+ + PS+LLLDE SALD+ ++
Sbjct: 113 ELLELV--GLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR 170
Query: 1188 EALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227
E L+++ G T + V H +D IAV+ GR+V+ G
Sbjct: 171 EELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 6e-39
Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 38/242 (15%)
Query: 345 IEFRDVYFCYPSRPDTL-VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403
+E +++ +P+ ++ L ++ + G+++GLVG SGSGKST + P G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 404 VLLDG---YKIRRLHLKWLRSQMGLVNQEPVL-------FATSITENILFGKDGASMDDV 453
++ DG K+ R K R ++ +V Q+P+ I E +
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRI----HGKLSK 117
Query: 454 ISAAKAA---------NAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKI 504
A K A + + + P ++SGGQ+QR+AIARAL +PK+
Sbjct: 118 KEARKEAVLLLLVGVGLPEEVLNRYP-----------HELSGGQRQRVAIARALALNPKL 166
Query: 505 LLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVE 561
L+ DE TSALD + + + + K+ + G T L I H L + A+ + V+ AGK+VE
Sbjct: 167 LIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226
Query: 562 SG 563
G
Sbjct: 227 EG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 2e-38
Identities = 71/250 (28%), Positives = 124/250 (49%), Gaps = 16/250 (6%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
M IE++N+ Y D+ L G+S ++E G+ L+G +G GK+T++ +L P
Sbjct: 1 MIEVIEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT 58
Query: 1065 KGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVL 1123
G + + D+ ++R I V QEP+L+ T+REN+ + AR + K
Sbjct: 59 SGEILVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFF---ARLYGLSKEEAE 114
Query: 1124 ANAHEFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSV 1181
E + G++D ++ LSGG KQR+++A A+L +P +L+LDE TS LD
Sbjct: 115 ERIEELLELFGLED----KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 1182 SESLVQEALEKM--MMGRTCVVVAHRLSTI-QKSDTIAVIKNGRVVEQGSHNELVALSRG 1238
S + E L ++ G T ++ H L + D + ++ +G+++ +G+ EL G
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230
Query: 1239 GAYYSLIKPQ 1248
L +
Sbjct: 231 KGVIELEPER 240
|
Length = 293 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 2e-38
Identities = 78/244 (31%), Positives = 120/244 (49%), Gaps = 25/244 (10%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IE ++ F YP L+ ++L + G+ V L+G +GSGKST + LL P GEV
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 405 LLDGYKIRRLHLKW-LRSQMGLVNQEPV--LFATSITENILFGK-----DGASMDD-VIS 455
L+DG LR ++GLV Q P LF ++ + + FG +++ V
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 456 AAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD 515
A + + + + P F +SGGQKQR+AIA L P+ILLLDE T+ LD
Sbjct: 122 ALELVGLEELLDRPP-----------FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 516 AQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRTANL-IMVLKAGKVVESGSHNELMNRG 572
+ R + E + K+ + G+T +I+ H L + ++VL GK++ G E+ N
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
Query: 573 EGGE 576
E
Sbjct: 231 ELLL 234
|
Length = 235 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 4e-38
Identities = 83/243 (34%), Positives = 131/243 (53%), Gaps = 41/243 (16%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTI---IGLLERFYDPLK 1065
IE+KN+ ++ D+ +LKG+SL +E G+ V ++G SG GKST+ + LE P
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDS 56
Query: 1066 GSVFMDEQDI-RNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYG--------KADARES 1115
GS+ +D +D+ ++ +LR + +V Q+ LF T+ EN+ KA+ARE
Sbjct: 57 GSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEARE- 115
Query: 1116 EIKKA-AVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEA 1174
KA +L G+ D D Y QLSGGQ+QR+A+ARA+ +P ++L DE
Sbjct: 116 ---KALELLEKV-----GLADKADAYPA----QLSGGQQQRVAIARALAMDPKVMLFDEP 163
Query: 1175 TSALDSVSESLVQEALEKMM----MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSH 1229
TSALD LV E L+ M G T ++V H + ++ +D + + G+++E+G
Sbjct: 164 TSALDP---ELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPP 220
Query: 1230 NEL 1232
E
Sbjct: 221 EEF 223
|
Length = 240 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 5e-38
Identities = 83/244 (34%), Positives = 119/244 (48%), Gaps = 36/244 (14%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKST---TIALLQRFYDPVE 401
IE R + + R VL+G++L V G+ + ++G SGSGKST I L R P
Sbjct: 1 IELRGLTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDS 54
Query: 402 GEVLLDGYKIRRL---HLKWLRSQMGLVNQEPVLFATSIT--ENILF-----GKDGASMD 451
GEVL+DG I L L LR +MG++ Q LF S+T EN+ F +
Sbjct: 55 GEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF-DSLTVFENVAFPLREHTRLSEEEI 113
Query: 452 DVISAAK--AANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDE 509
I K A P ++SGG K+R+A+ARAL DP++LL DE
Sbjct: 114 REIVLEKLEAVGLRGAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDE 162
Query: 510 ATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHN 566
T+ LD + ++ + I + K G T++++ H L T A+ I VL GK+V G+
Sbjct: 163 PTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPE 222
Query: 567 ELMN 570
EL
Sbjct: 223 ELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 6e-38
Identities = 84/246 (34%), Positives = 140/246 (56%), Gaps = 8/246 (3%)
Query: 1006 RGRIELKNVFFAYPTRPD-QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
RGR+E +N Y R D ++L+ +++ I G+ V +VG++G GKS++ L R +
Sbjct: 1282 RGRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339
Query: 1065 KGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENI-AYGKADARESEIKKAAVL 1123
+G + +D +I L LR I ++ Q+P LF+G++R N+ + + + E+ A L
Sbjct: 1340 EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYS--DEEVWWALEL 1397
Query: 1124 ANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183
A+ F+S + D D C E G LS GQ+Q + LARA+L+ IL+LDEAT+A+D ++
Sbjct: 1398 AHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD 1457
Query: 1184 SLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYS 1243
+L+Q + T + +AHRL+TI + V+ G V E G+ + L+ + G +YS
Sbjct: 1458 NLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ--QRGIFYS 1515
Query: 1244 LIKPQG 1249
+ K G
Sbjct: 1516 MAKDAG 1521
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 1e-37
Identities = 73/230 (31%), Positives = 127/230 (55%), Gaps = 9/230 (3%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IE +NV Y + + L+L+I G+ + L+G SG GK+T + ++ R +P G +
Sbjct: 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAH 1127
F+D +DIR + +LR I V Q+ LF T+ ENIA + + K + A
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIA---LVPKLLKWPKEKIRERAD 115
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
E ++ + + +LSGGQ+QR+ +ARA+ +P +LL+DE ALD ++ +Q
Sbjct: 116 ELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQ 175
Query: 1188 EALEKM--MMGRTCVVVAHRL-STIQKSDTIAVIKNGRVVEQGSHNELVA 1234
E +++ +G+T V V H + + +D IA++KNG +V+ G+ +E++
Sbjct: 176 EEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 1e-37
Identities = 71/225 (31%), Positives = 108/225 (48%), Gaps = 52/225 (23%)
Query: 1010 ELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVF 1069
E++N+ Y R +L LSL IEAG+ V ++G +G GKST++ L P G +
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 1070 MDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEF 1129
+D +D+ + + K+L IA V Q A L
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ---------------------------ALELLGLAHL 90
Query: 1130 ISGMKDGYDTYCGERGV-QLSGGQKQRIALARAILKNPSILLLDEATSALD-----SVSE 1183
+R +LSGG++QR+ LARA+ + P ILLLDE TS LD + E
Sbjct: 91 A------------DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138
Query: 1184 SLVQEALEKMMMGRTCVVVAHRLS-TIQKSDTIAVIKNGRVVEQG 1227
L + A E+ G+T V+V H L+ + +D + ++K+GR+V QG
Sbjct: 139 LLRRLARER---GKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 1e-37
Identities = 78/230 (33%), Positives = 133/230 (57%), Gaps = 17/230 (7%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+E++NV ++ D + +SL I+ G+ V L+G SGCGK+T++ ++ F P G +
Sbjct: 6 LEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAH 1127
+D +DI ++ + I +V Q LF T+ EN+A+G ++ +KKA + A
Sbjct: 63 LLDGEDI--TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKK--LKKAEIKARVE 118
Query: 1128 EFISGMK-DGYDTYCGERGV-QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL 1185
E + + +G+ +R QLSGGQ+QR+ALARA++ P +LLLDE SALD+
Sbjct: 119 EALELVGLEGF----ADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQ 174
Query: 1186 VQEALEKM--MMGRTCVVVAH-RLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
+++ L+++ +G T V V H + + SD IAV+ +GR+ + G+ E+
Sbjct: 175 MRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 1e-37
Identities = 73/230 (31%), Positives = 124/230 (53%), Gaps = 10/230 (4%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IE +NV Y ++ + ++L IE G+ + L+G SG GK+T + ++ R +P G +
Sbjct: 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAH 1127
+D +DI + + +LR I V Q+ LF T+ ENIA + K + A
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIAT---VPKLLGWDKERIKKRAD 115
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
E + + Y +LSGGQ+QR+ +ARA+ +P ILL+DE ALD ++ +Q
Sbjct: 116 ELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQ 175
Query: 1188 EALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
E ++++ +G+T V V H + K +D IAV+ G +V+ + +E++A
Sbjct: 176 EEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225
|
Length = 309 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 2e-37
Identities = 75/240 (31%), Positives = 119/240 (49%), Gaps = 28/240 (11%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+E ++ F Y +P +L L+ +P G+ G++G +GSGKST + L P GEV
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVL-FATSITENILFGK----------DGASMDDV 453
LLDG I L K L ++ V Q P F ++ E +L G+ + V
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 454 ISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSA 513
A + + V +L SGG++QR+ IARAL ++ ILLLDE TS
Sbjct: 120 EEALELLGLEHLADRP-------VDEL----SGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 514 LDAQSERIVQEAIDKVSK--GRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELMN 570
LD + V E + +++ G T +++ H L+ R A+ +++LK GK+V G+ E++
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228
|
Length = 258 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 2e-37
Identities = 144/523 (27%), Positives = 244/523 (46%), Gaps = 72/523 (13%)
Query: 95 RMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTL----AY 150
R+ L S+LR + FF T G +V++ S D I + ++ +
Sbjct: 984 RLHDAMLNSILRAPMLFFHTNPTG-----RVINRFSKDIGDIDRNVANLMNMFMNQLWQL 1038
Query: 151 LSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAG----- 205
LSTF S I W A +PL ++F L + V + ++S +
Sbjct: 1039 LSTFALIGTVSTISLW----AIMPLLILFYAAYLYYQSTSREV--RRLDSVTRSPIYAQF 1092
Query: 206 GIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGF----------IKGLLMGS 255
G A +SSIR +Y R + K+M+ I+ I+ +G
Sbjct: 1093 GEALNGLSSIRAYKAY-------DRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGG 1145
Query: 256 MGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKV-- 313
+ MI++ ++ V G AG + MG L L N+T + +
Sbjct: 1146 V-MIWL-------TATFAVLRNGNAENQ---AGFASTMGLL--LSYTLNITTLLSGVLRQ 1192
Query: 314 ---------AATRIFEMVD---RTPAIDTDDKMGKALSYVRGEIEFRDVYFCY-PSRPDT 360
+ R+ +D AI +++ RG I+F DV+ Y P P
Sbjct: 1193 ASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWP-SRGSIKFEDVHLRYRPGLPP- 1250
Query: 361 LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLR 420
VL GL+ V + VG+VG +G+GKS+ + L R + +G +++D + + L LR
Sbjct: 1251 -VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLR 1309
Query: 421 SQMGLVNQEPVLFATSITENI-LFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQ 479
+ ++ Q PVLF+ ++ NI F + + D+ A + A+ D I + P G + +V +
Sbjct: 1310 RVLSIIPQSPVLFSGTVRFNIDPFSEHNDA--DLWEALERAHIKDVIDRNPFGLDAEVSE 1367
Query: 480 LGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIA 539
G S GQ+Q +++ARAL+R KIL+LDEAT+++D +++ ++Q I + K T L+IA
Sbjct: 1368 GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIA 1427
Query: 540 HRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVE 582
HRL+TI + I+VL +G+V+E S EL++R + +++MV
Sbjct: 1428 HRLNTIIDCDKILVLSSGQVLEYDSPQELLSR-DTSAFFRMVH 1469
|
Length = 1495 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 1e-36
Identities = 76/226 (33%), Positives = 121/226 (53%), Gaps = 24/226 (10%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV-----EGEVLLDGYKI--RRL 414
L+ +NL +P + L+G SG GKST + L R D V EG+VL DG I +++
Sbjct: 16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75
Query: 415 HLKWLRSQMGLVNQEPVLFATSITENILFG------KDGASMDDVISAA--KAANAHDFI 466
+ LR ++G+V Q+P F SI +NI +G KD +D+++ + KAA
Sbjct: 76 DVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAA------ 129
Query: 467 TKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAI 526
L D + ++ +SGGQ+QR+ IARAL +P++LLLDE TSALD + ++E I
Sbjct: 130 --LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELI 187
Query: 527 DKVSKGRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELMNR 571
++ K T +I+ H + R ++ G++VE G ++
Sbjct: 188 QELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 2e-36
Identities = 66/223 (29%), Positives = 102/223 (45%), Gaps = 29/223 (13%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+E V + VL+ +NL V G+ V ++G SG GKST + L+ P GEV
Sbjct: 4 LEIEGVSKSFGGVE---VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANA- 462
LLDG + +G V QE L ++ +N+ G + + +A
Sbjct: 61 LLDGRPVTGPG-----PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115
Query: 463 -----HDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ 517
F K P Q+SGG +QR+AIARAL PK+LLLDE ALDA
Sbjct: 116 ELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 518 SERIVQEAIDKV--SKGRTTLIIAHRLS-TIRTANLIMVLKAG 557
+ +Q+ + ++ +T L++ H + + A+ ++VL
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 3e-36
Identities = 61/219 (27%), Positives = 107/219 (48%), Gaps = 19/219 (8%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
+E++ V ++ +L+ ++L +E G+ VA++G SGCGKST++ L+ P G
Sbjct: 3 LLEIEGVSKSFGGVE---VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYG-KADARESEIKKAAVLAN 1125
V +D + + I V QE L T+ +N+A G + + +
Sbjct: 60 VLLDGRPV-----TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKEL 114
Query: 1126 AHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL 1185
G+ D Y QLSGG +QR+A+ARA+ P +LLLDE ALD+++
Sbjct: 115 LELV--GLAGFEDKYPH----QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREE 168
Query: 1186 VQEALEKMM--MGRTCVVVAHRLS-TIQKSDTIAVIKNG 1221
+Q+ L ++ +T ++V H + + +D + V+ N
Sbjct: 169 LQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 4e-36
Identities = 70/235 (29%), Positives = 123/235 (52%), Gaps = 13/235 (5%)
Query: 345 IEFRDVYFCYPSRP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403
IE ++V + L+ ++L VP G+ G++G SG+GKST I + P G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 404 VLLDGYKIRRL---HLKWLRSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKA 459
VL+DG + L L+ R ++G++ Q L ++ ++ EN+ + A + +
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 460 ANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE 519
+ + G E + Q+SGGQKQR+ IARAL +PK+LL DEATSALD ++
Sbjct: 122 LELLELV-----GLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176
Query: 520 RIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571
+ + + +++ G T ++I H + ++ + + V++ G+VVE G+ E+
Sbjct: 177 QSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 7e-36
Identities = 66/215 (30%), Positives = 98/215 (45%), Gaps = 60/215 (27%)
Query: 1010 ELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVF 1069
E++N+ F Y R L +SL ++AG+ VALVG +G GKST++ + P G +
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 1070 MDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEF 1129
+D +DI L++LR I V Q
Sbjct: 58 IDGKDIAKLPLEELRRRIGYVPQ------------------------------------- 80
Query: 1130 ISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEA 1189
+SG GQ+QR+ALARA+L NP +LLLDE TS LD S + E
Sbjct: 81 LSG------------------GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 1190 LEKMMM-GRTCVVVAHRLSTIQK-SDTIAVIKNGR 1222
L ++ GRT ++V H + +D + V+K+G+
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 9e-36
Identities = 61/218 (27%), Positives = 107/218 (49%), Gaps = 48/218 (22%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IE++N+ Y + L +SL +E G+ L+G +G GK+T+I ++ P G +
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAH 1127
+ +DI+ ++++ I + +EP+L+ T+REN+
Sbjct: 58 KVLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENL---------------------- 94
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
+LSGG KQR+ALA+A+L +P +L+LDE TS LD S
Sbjct: 95 -------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 1188 EALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRV 1223
E L ++ G+T ++ +H L ++ D +A++ NGR+
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 1e-35
Identities = 79/236 (33%), Positives = 133/236 (56%), Gaps = 16/236 (6%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IE +++ YP L+ +NL + G+ V ++G SG+GKST + L DP GE+
Sbjct: 4 IEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 405 LLDGYKIRRLH---LKWLRSQMGLVNQEPVLFA-TSITENILFGKDG-----ASMDDVIS 455
L +G +I +L L+ LR +G++ Q+ L S+ EN+L G+ G S+ + S
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121
Query: 456 AAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD 515
A A D + ++ G + Q +SGGQ+QR+AIARAL++ PKI+L DE ++LD
Sbjct: 122 KEDKAQALDALERV--GILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179
Query: 516 AQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNEL 568
+S + V + + +++ G T ++ H++ + A+ I+ LKAG++V G +EL
Sbjct: 180 PESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-35
Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 48/220 (21%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+E ++V Y VL ++L + AG+ V L+G SGSGKST + + +P G +
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 405 LLDGYKIRRL--HLKWLRSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAAN 461
L+DG + L L LR ++G+V Q+ LF ++ ENI G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 462 AHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERI 521
+SGGQ+QR+A+ARAL DP +LLLDE TSALD + R
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 522 VQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGK 558
V+ + + G T +++ H L A+ ++VL+ GK
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 2e-35
Identities = 74/229 (32%), Positives = 123/229 (53%), Gaps = 14/229 (6%)
Query: 345 IEFRDVYFCYPSR--PDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402
IE +V + L ++L +P G+ G++G SG+GKST + L+ P G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 403 EVLLDGYKIRRLH---LKWLRSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAK 458
V +DG + L L+ LR ++G++ Q L ++ ++ EN+ F + A + +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 459 AANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS 518
A + + L D + QL SGGQKQR+AIARAL +PKILL DEATSALD ++
Sbjct: 122 VAELLELV-GLSDKADRYPAQL----SGGQKQRVAIARALANNPKILLCDEATSALDPET 176
Query: 519 ERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGS 564
+ + E + +++ G T ++I H + ++ + + VL G++VE G+
Sbjct: 177 TQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225
|
Length = 339 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 3e-35
Identities = 80/240 (33%), Positives = 127/240 (52%), Gaps = 36/240 (15%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDP 1063
+ELKNV ++ +LK ++L IE G+ V L+G SGCGKST I GL E P
Sbjct: 3 ELELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE----P 55
Query: 1064 LKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLF-AGTIRENIAYG-------KADARES 1115
G + +D +D+ + + + IA+V Q L+ T+ ENIA+G KA+ +
Sbjct: 56 TSGEILIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDK- 112
Query: 1116 EIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEAT 1175
+K+ A L ++ + +QLSGGQ+QR+ALARA+++ P + LLDE
Sbjct: 113 RVKEVAKLLGLEHLLN-----------RKPLQLSGGQRQRVALARALVRKPKVFLLDEPL 161
Query: 1176 SALDSVSESLVQEALEKM--MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
S LD+ L++ ++K+ +G T + V H +D I V+ +GR+ + G+ EL
Sbjct: 162 SNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221
|
Length = 338 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 4e-35
Identities = 78/242 (32%), Positives = 123/242 (50%), Gaps = 28/242 (11%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IE++N+ YP + LK +SL I G+ VAL+G SG GKST++ L +P GSV
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 1069 FMDEQDIRNY---NLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADAR----------- 1113
+D DI L+QLR I ++ Q+ L ++ EN+ G+ R
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 1114 ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDE 1173
+ E ++A G+ D QLSGGQ+QR+A+ARA+++ P ++L DE
Sbjct: 119 KEEKQRALAALER----VGLLDKAYQRAD----QLSGGQQQRVAIARALMQQPKLILADE 170
Query: 1174 ATSALDSVSESLVQEALEK--MMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHN 1230
++LD S V + L++ G T +V H++ ++ +D I +K+GR+V G
Sbjct: 171 PVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230
Query: 1231 EL 1232
EL
Sbjct: 231 EL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 5e-35
Identities = 80/234 (34%), Positives = 134/234 (57%), Gaps = 6/234 (2%)
Query: 343 GEIEFRDVYFCYPS--RPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV 400
GEI+ D+ Y + +P VL+ + + G+ VG+ G +GSGKS+ R D
Sbjct: 18 GEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74
Query: 401 EGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAA 460
+G++++DG I +L L LRS++ ++ Q+P+LF+ SI N L + + D + A + A
Sbjct: 75 DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN-LDPECKCTDDRLWEALEIA 133
Query: 461 NAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER 520
+ + LP G + V + G S GQ+Q +ARA +R IL++DEAT+++D +E
Sbjct: 134 QLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193
Query: 521 IVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEG 574
I+Q+ + RT + IAHR+STI A+L++VL G +VE + L+ + +G
Sbjct: 194 ILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDG 247
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 5e-35
Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 22/225 (9%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IE+KN+ ++ D +LKG+ L ++ G+ V ++G SG GKST++ + +P G++
Sbjct: 1 IEIKNLHKSFG---DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 1069 FMDEQDIRN--YNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLAN 1125
+D + + N+ +LR + +V Q+ LF T+ ENI + + KA
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKG--MSKAEAEER 115
Query: 1126 AHEFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183
A E + G+ D D Y QLSGGQ+QR+A+ARA+ NP ++L DE TSALD
Sbjct: 116 ALELLEKVGLADKADAYPA----QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP--- 168
Query: 1184 SLVQEALEKMMM----GRTCVVVAHRLSTIQK-SDTIAVIKNGRV 1223
LV E L+ M G T VVV H + ++ +D + + +GR+
Sbjct: 169 ELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 5e-35
Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 39/244 (15%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IE R V S D ++L G++L VP G+ + ++GGSGSGKST + L+ P +GE+
Sbjct: 9 IEVRGVTK---SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 405 LLDGYKIRRL---HLKWLRSQMGLVNQEPVLFATSIT--ENILF------GKDGASMDDV 453
L+DG I +L L +R +MG++ Q+ LF +S+T EN+ F + + ++
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALF-SSLTVFENVAFPLREHTKLPESLIREL 124
Query: 454 ----ISAA--KAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLL 507
+ + A A P ++SGG ++R+A+ARA+ DP++L L
Sbjct: 125 VLMKLELVGLRGAAAD----LYPS-----------ELSGGMRKRVALARAIALDPELLFL 169
Query: 508 DEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGS 564
DE TS LD S ++ E I +++ G T +++ H L ++ T A+ + VL GKV+ G+
Sbjct: 170 DEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229
Query: 565 HNEL 568
EL
Sbjct: 230 PEEL 233
|
Length = 263 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 1e-34
Identities = 58/218 (26%), Positives = 104/218 (47%), Gaps = 48/218 (22%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IE R++ Y + L ++L V G+ GL+G +G+GK+T I ++ P GE+
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAH 463
+ G I++ + ++ ++G + +EP L+ ++ EN+
Sbjct: 58 KVLGKDIKKEPEE-VKRRIGYLPEEPSLYENLTVRENLKL-------------------- 96
Query: 464 DFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQ 523
SGG KQR+A+A+AL+ DP++L+LDE TS LD +S R
Sbjct: 97 ---------------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 524 EAIDK-VSKGRTTLIIAHRLSTI-RTANLIMVLKAGKV 559
E + + +G+T L+ +H L R + + +L G++
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 1e-34
Identities = 73/236 (30%), Positives = 124/236 (52%), Gaps = 22/236 (9%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
I+ +V F YP+ + L+ ++ + G+ V ++G +GSGKST +L P GE+
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEP--VLFATSITENILFG-----KDGASMDDVI-SA 456
+DG I + +LK +R ++G++ Q P ++ ++I FG M D+I
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 457 AKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDA 516
AK D++ K P +SGGQKQR+AIA L +P+I++ DE+TS LD
Sbjct: 127 AKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 517 QSERIVQEAIDKVSKGRT-TLI-IAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570
+ +R +++ + + K R TLI I H + A+ ++V GK++ G E++N
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231
|
Length = 271 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 2e-34
Identities = 88/249 (35%), Positives = 137/249 (55%), Gaps = 28/249 (11%)
Query: 1007 GRIELKNVFFAYPTRPD-QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLK 1065
G I+ ++V Y RP+ +L GLS +I + V +VG++G GKS+++ L R + +
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 1066 GSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENI----AYGKADARESEIKKAA 1121
G + +D DI + L LR + ++ Q P LF+GT+R N+ + AD ES
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWES------ 1347
Query: 1122 VLANAHEFISGMKD-------GYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEA 1174
L AH +KD G D E G S GQ+Q ++LARA+L+ IL+LDEA
Sbjct: 1348 -LERAH-----LKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEA 1401
Query: 1175 TSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVA 1234
T+A+D +++L+Q+ + + T +++AHRL+TI D I V+ GRVVE + L
Sbjct: 1402 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENL-- 1459
Query: 1235 LSRGGAYYS 1243
LS G+ +S
Sbjct: 1460 LSNEGSAFS 1468
|
Length = 1622 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 129 bits (328), Expect = 6e-34
Identities = 74/228 (32%), Positives = 115/228 (50%), Gaps = 23/228 (10%)
Query: 345 IEFRDVYFCYPSRPDTL-VLQGLNLRVPAGKSVGLVGGSGSGKST---TIALLQRFYDPV 400
IE +++ Y + + L+G++L + G+ V +VG SGSGKST + L R P
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 401 EGEVLLDGYKIRRLHLKWL----RSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVIS 455
GEV +DG I +L K L R +G V Q L + EN+ + V
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP---LLLAGVPK 114
Query: 456 AAKAANAHDFITK--LPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSA 513
+ A + + + L D +L SGGQ+QR+AIARAL DPKI+L DE T
Sbjct: 115 KERRERAEELLERVGLGDRLNHYPSEL----SGGQQQRVAIARALANDPKIILADEPTGN 170
Query: 514 LDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKV 559
LD+++ + V E + +++K G T +++ H A+ I+ L+ GK+
Sbjct: 171 LDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 129 bits (328), Expect = 6e-34
Identities = 66/215 (30%), Positives = 108/215 (50%), Gaps = 23/215 (10%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW 418
L L+L V G+ + L+G SG GK+T + L+ P GE+L+DG + +
Sbjct: 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDV--TGVPP 69
Query: 419 LRSQMGLVNQEPVLFAT-SITENILFGKDGASMDD------VISAAKAANAHDFITKLPD 471
R +G+V Q+ LF ++ ENI FG + V + + + P
Sbjct: 70 ERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPH 129
Query: 472 GYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK 531
++SGGQ+QR+A+ARAL R+P +LLLDE SALDA+ ++E + ++ +
Sbjct: 130 -----------ELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178
Query: 532 --GRTTLIIAHRLS-TIRTANLIMVLKAGKVVESG 563
G TT+ + H + A+ I V+ G++V+ G
Sbjct: 179 ELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 7e-34
Identities = 83/239 (34%), Positives = 128/239 (53%), Gaps = 26/239 (10%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP----- 399
IE RD+ Y D L+ +NL +P K L+G SG GKST + L R D
Sbjct: 8 IEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 400 VEGEVLLDGYKIR--RLHLKWLRSQMGLVNQEPVLFATSITENI-----LFGKDGASMDD 452
VEGEVLLDG I ++ + LR ++G+V Q+P F SI +N+ L G +D+
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE 124
Query: 453 VISAA--KAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEA 510
++ ++ KAA L D + ++ + +SGGQ+QR+ IARAL P++LL+DE
Sbjct: 125 IVESSLKKAA--------LWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEP 176
Query: 511 TSALDAQSERIVQEAIDKVSKGRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNEL 568
TSALD S ++E I ++ K T +I+ H + R ++ G++VE G +++
Sbjct: 177 TSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235
|
Length = 253 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 8e-34
Identities = 80/248 (32%), Positives = 133/248 (53%), Gaps = 47/248 (18%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPL 1064
IE++ V ++ D++IL G+ L + G+ +A++G SG GKST I+GLL P
Sbjct: 9 IEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR----PD 61
Query: 1065 KGSVFMDEQDIRNYN---LKQLRSHIALVSQEPTLFAG-TIRENIAYG---KADARESEI 1117
KG + +D +DI + L ++R + ++ Q+ LF+ T+ EN+A+ ES I
Sbjct: 62 KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLI 121
Query: 1118 KKAAVLANAHEFISGMK--------DGYDTYCGERGVQLSGGQKQRIALARAILKNPSIL 1169
++ + MK D Y E LSGG ++R+ALARAI +P +L
Sbjct: 122 RE----------LVLMKLELVGLRGAAADLYPSE----LSGGMRKRVALARAIALDPELL 167
Query: 1170 LLDEATSALDSVS----ESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVV 1224
LDE TS LD +S + L++E + +G T ++V H L ++ +D +AV+ +G+V+
Sbjct: 168 FLDEPTSGLDPISAGVIDELIRELNDA--LGLTVIMVTHDLDSLLTIADRVAVLADGKVI 225
Query: 1225 EQGSHNEL 1232
+G+ EL
Sbjct: 226 AEGTPEEL 233
|
Length = 263 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 8e-34
Identities = 84/245 (34%), Positives = 128/245 (52%), Gaps = 33/245 (13%)
Query: 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD---- 1062
G+I +K++ Y D LK ++L IE + AL+G SGCGKST + L R D
Sbjct: 2 GKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS 58
Query: 1063 -PLKGSVFMDEQDI--RNYNLKQLRSHIALVSQEPTLFAGTIRENIAYG----------K 1109
++G V +D QDI + ++ QLR + +V Q+P F +I +N+AYG K
Sbjct: 59 VKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKK 118
Query: 1110 ADA-RESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSI 1168
D E +K AA+ +KD + + LSGGQ+QR+ +ARA+ P +
Sbjct: 119 LDEIVEKSLKGAALWDE-------VKDRLK----KSALGLSGGQQQRLCIARALAVEPEV 167
Query: 1169 LLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227
LL+DE TSALD +S ++E ++++ T V+V H + + SD A NG +VE G
Sbjct: 168 LLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFG 227
Query: 1228 SHNEL 1232
+L
Sbjct: 228 DTVDL 232
|
Length = 250 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-33
Identities = 73/235 (31%), Positives = 118/235 (50%), Gaps = 32/235 (13%)
Query: 345 IEFRDVYFCYPSRPDTL-VLQGLNLRVPAGKSVGLVGGSGSGKST---TIALLQRFYDPV 400
IE ++V Y + + L+ +NL + AG+ V +VG SGSGKST + L + P
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PT 58
Query: 401 EGEVLLDGYKIRRLHLKWL----RSQMGLVNQEPVLFAT-SITENILFG------KDGAS 449
GEVL++G + +L K L R ++G V Q L ++ EN+ G
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 450 MDDVISAAKAAN-AHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLD 508
+ + K P ++SGGQ+QR+AIARALI +PKI+L D
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPS-----------ELSGGQQQRVAIARALINNPKIILAD 167
Query: 509 EATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKVVE 561
E T LD+++ + V E + +++K G+T +++ H + A+ ++ LK GK+ E
Sbjct: 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 1e-33
Identities = 75/238 (31%), Positives = 122/238 (51%), Gaps = 26/238 (10%)
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403
E+E ++V + VL+ +NL + G+ V L+G SG GKST + ++ +P GE
Sbjct: 3 ELELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 404 VLLDGYKIRRLHLKWLRSQMGLVNQEPVLFAT-SITENILFG--KDGASMDD----VISA 456
+L+DG + L + + + +V Q L+ ++ ENI FG G + V
Sbjct: 60 ILIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV 117
Query: 457 AKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDA 516
AK + + P Q+SGGQ+QR+A+ARAL+R PK+ LLDE S LDA
Sbjct: 118 AKLLGLEHLLNRKPL-----------QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 517 QSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571
+ +++ I K+ + G TT+ + H T A+ I+V+ G++ + G+ EL R
Sbjct: 167 KLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224
|
Length = 338 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-33
Identities = 79/245 (32%), Positives = 127/245 (51%), Gaps = 34/245 (13%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IE ++ YP+ L+ ++L + G+ V L+G SG+GKST + L +P G V
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 405 LLDGYKIRRL---HLKWLRSQMGLVNQEPVLFA-TSITENILFGKDG--------ASMDD 452
L+DG I +L L+ LR Q+G++ Q+ L S+ EN+L G+ G +
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 453 VISAAKAANAHDFITKLPDGYETQVGQLGF------QMSGGQKQRIAIARALIRDPKILL 506
+A A + +VG L Q+SGGQ+QR+AIARAL++ PK++L
Sbjct: 119 KEEKQRALAALE-----------RVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLIL 167
Query: 507 LDEATSALDAQSERIVQEAIDKV--SKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESG 563
DE ++LD S R V + + ++ +G T ++ H++ R A+ I+ LK G++V G
Sbjct: 168 ADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227
Query: 564 SHNEL 568
EL
Sbjct: 228 PPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 1e-33
Identities = 73/216 (33%), Positives = 118/216 (54%), Gaps = 21/216 (9%)
Query: 1031 SLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN---LKQLRSH- 1086
SL + G+ ++G SG GKST++ + R +P G V +D QDI + L++LR
Sbjct: 44 SLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103
Query: 1087 IALVSQEPTLFAG-TIRENIAYG---KADARESEIKKAA-VLANAHEFISGMKDGYDTYC 1141
I++V Q L T+ EN+A+G + R ++AA L G++ Y
Sbjct: 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELV-----GLEGWEHKYP 158
Query: 1142 GERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKM--MMGRTC 1199
E LSGG +QR+ LARA+ +P ILL+DEA SALD + +Q+ L ++ + +T
Sbjct: 159 DE----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTI 214
Query: 1200 VVVAHRLS-TIQKSDTIAVIKNGRVVEQGSHNELVA 1234
V + H L ++ D IA++K+GR+V+ G+ E++
Sbjct: 215 VFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 5e-33
Identities = 72/218 (33%), Positives = 111/218 (50%), Gaps = 28/218 (12%)
Query: 1011 LKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST---IIGLLERFYDPLKGS 1067
LKN+ + + +IL L+L IE GK A++G+SG GKST IIGLLE+F G
Sbjct: 1 LKNISKKFGDK---VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQ 54
Query: 1068 VFMDEQDIRNYNLKQ----LRSHIALVSQEPTLFAG-TIRENI----AYGKADARESEIK 1118
V+++ Q+ N K+ R + + Q L T+ EN+ Y K +E K
Sbjct: 55 VYLNGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREK 114
Query: 1119 KAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSAL 1178
K L + + Y +LSGG++QR+ALARAILK P ++L DE T +L
Sbjct: 115 KKEALEKVGLNLKLKQKIY---------ELSGGEQQRVALARAILKPPPLILADEPTGSL 165
Query: 1179 DSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQKSDTI 1215
D + V + L ++ G+T ++V H +++D +
Sbjct: 166 DPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 7e-33
Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 26/220 (11%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKST---TIALLQRFYDPVEGEVLLDGYKI-RRLHLK 417
VL+G++L V G+ V ++G SGSGKST + L+ P G + +DG + + +
Sbjct: 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDIL 73
Query: 418 WLRSQMGLVNQEPVLFA-TSITENILFG-----KDGASMDDVISAAKA-ANAHDFITKLP 470
LR ++G+V Q+ LF ++ EN+ K +S A+A A + + K+
Sbjct: 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKK--------LSKAEAREKALELLEKV- 124
Query: 471 DGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS 530
G + Q+SGGQ+QR+AIARAL DPK++L DE TSALD + V + + ++
Sbjct: 125 -GLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183
Query: 531 K-GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNEL 568
+ G T +I+ H + R A+ ++ + GK++E G E
Sbjct: 184 EEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
|
Length = 240 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 7e-33
Identities = 97/304 (31%), Positives = 164/304 (53%), Gaps = 11/304 (3%)
Query: 952 LILLFTAYVIAEAGSMTSDISKGSNAVRSVFAI---LDRRSEIDPDSPQGRDIKR-QMRG 1007
L+L +T + + SK N++ SV + +D SE R + RG
Sbjct: 1174 LLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRG 1233
Query: 1008 RIELKNVFFAY-PTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
I+ ++V Y P P +L GLS + + V +VG++G GKS+++ L R + KG
Sbjct: 1234 SIKFEDVHLRYRPGLPP--VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKG 1291
Query: 1067 SVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANA 1126
+ +D+ D+ + L LR ++++ Q P LF+GT+R NI ++ ++++ +A A+
Sbjct: 1292 RIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNID-PFSEHNDADLWEALERAHI 1350
Query: 1127 HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
+ I G D E G S GQ+Q ++LARA+L+ IL+LDEAT+++D ++SL+
Sbjct: 1351 KDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI 1410
Query: 1187 QEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSR-GGAYYSLI 1245
Q + + T +V+AHRL+TI D I V+ +G+V+E S EL LSR A++ ++
Sbjct: 1411 QRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQEL--LSRDTSAFFRMV 1468
Query: 1246 KPQG 1249
G
Sbjct: 1469 HSTG 1472
|
Length = 1495 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 8e-33
Identities = 69/234 (29%), Positives = 124/234 (52%), Gaps = 15/234 (6%)
Query: 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402
+E R+V + D + ++L + G+ V L+G SG GK+T + ++ F P G
Sbjct: 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFAT-SITENILFG-KDGASMDDVISAAKAA 460
E+LLDG I + + +G+V Q LF ++ EN+ FG K + A+
Sbjct: 61 EILLDGEDIT--DVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118
Query: 461 NAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER 520
A + + +G+ + Q+SGGQ+QR+A+ARAL+ +PK+LLLDE SALDA+
Sbjct: 119 EALELV--GLEGFADRKPH---QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLRE 173
Query: 521 IVQEAIDKVSK--GRTTLIIAH-RLSTIRTANLIMVLKAGKVVESGSHNELMNR 571
+++ + ++ + G T + + H + + ++ I V+ G++ + G+ E+ R
Sbjct: 174 QMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227
|
Length = 352 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 8e-33
Identities = 69/239 (28%), Positives = 116/239 (48%), Gaps = 22/239 (9%)
Query: 1008 RIELKNVFFAYPTRPDQM-ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
+ ++N+ Y L +SL+IE G+T+ +VG+SG GKST+ LL P G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1067 SVFMDEQDI-RNYNLKQLRSHIALVSQEPTL-------FAGTIRENIAYGKADARESEIK 1118
S+ +D + + K + +V Q+P + E + + I
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIA 122
Query: 1119 KAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSAL 1178
+ G+ + R +LSGGQ+QRIA+ARA++ P +L+LDE TSAL
Sbjct: 123 ELLDQV-------GLPPSFLD---RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSAL 172
Query: 1179 DSVSESLVQEALEKMMMGR--TCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
D ++ + L ++ R T + ++H L+ ++ D IAV+ NG++VE G EL++
Sbjct: 173 DVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231
|
Length = 252 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 1e-32
Identities = 80/263 (30%), Positives = 135/263 (51%), Gaps = 42/263 (15%)
Query: 1005 MRGRIELKNVFFAYPTRPD---QMILKGL------------------SLKIEAGKTVALV 1043
M +IE+KNV+ + P +++ +G SL +E G+ ++
Sbjct: 1 MMVKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIM 60
Query: 1044 GQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN---LKQLRSH-IALVSQEPTLFAG 1099
G SG GKST++ LL R +P +G + +D +DI + L++LR I++V Q L
Sbjct: 61 GLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPH 120
Query: 1100 -TIRENIAYG----KADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQ 1154
T+ EN+A+G E E + L G++ D Y +LSGG +Q
Sbjct: 121 RTVLENVAFGLEVQGVPKAEREERALEALELV-----GLEGYADKYPN----ELSGGMQQ 171
Query: 1155 RIALARAILKNPSILLLDEATSALDSVSESLVQEALEKM--MMGRTCVVVAHRLS-TIQK 1211
R+ LARA+ +P ILL+DEA SALD + + +Q+ L ++ + +T V + H L ++
Sbjct: 172 RVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRI 231
Query: 1212 SDTIAVIKNGRVVEQGSHNELVA 1234
D IA++K+G +V+ G+ E++
Sbjct: 232 GDRIAIMKDGEIVQVGTPEEILL 254
|
Length = 386 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-32
Identities = 80/228 (35%), Positives = 123/228 (53%), Gaps = 14/228 (6%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IEL+NV Y + L G+SL I+ G+ L+G SGCGK+T++ L+ F P G +
Sbjct: 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAH 1127
+D +DI NL + + V Q LF T+ ENIA+G R ++ KA +
Sbjct: 58 LLDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFG---LRLKKLPKAEIKERVA 112
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
E + ++ + Y + QLSGGQ+QR+A+ARA++ P +LLLDE ALD +Q
Sbjct: 113 EALDLVQ--LEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQ 170
Query: 1188 EALEKM--MMGRTCVVVAHRLS-TIQKSDTIAVIKNGRVVEQGSHNEL 1232
L+++ +G T V V H + SD IAV+ G++ + G+ E+
Sbjct: 171 LELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-32
Identities = 71/236 (30%), Positives = 120/236 (50%), Gaps = 19/236 (8%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IEF +V Y + LNL + G+ + L+G SGSGK+TT+ ++ R +P GE+
Sbjct: 1 IEFENVTKRYGGGKK--AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFA-TSITENI-----LFGKDGASMDDVISAAK 458
+DG IR LR ++G V Q+ LF ++ ENI L + +
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR-----ER 113
Query: 459 AANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS 518
A + P + + ++SGGQ+QR+ +ARAL DP +LL+DE ALD +
Sbjct: 114 ADELLALVGLDPAEF---ADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPIT 170
Query: 519 ERIVQEAIDKVSK--GRTTLIIAHRL-STIRTANLIMVLKAGKVVESGSHNELMNR 571
+QE ++ + G+T + + H + R A+ I ++K G++V+ G+ +E++
Sbjct: 171 RDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-32
Identities = 67/240 (27%), Positives = 105/240 (43%), Gaps = 63/240 (26%)
Query: 1009 IELKNVFFAYPTR------PDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD 1062
+E+KN+ +P + G+S I+ G+T+ LVG+SGCGKST+ L+ +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 1063 PLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKK--A 1120
P G + + +DI + + R + +
Sbjct: 65 PTSGEILFEGKDITKLS------------------------------KEERRERVLELLE 94
Query: 1121 AV-LANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD 1179
V L Y E LSGGQ+QRI +ARA+ NP +++ DE SALD
Sbjct: 95 KVGLPEEF---------LYRYPHE----LSGGQRQRIGIARALALNPKLIVADEPVSALD 141
Query: 1180 SVSESLVQEALEKMMM------GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
VS VQ + ++ G T + ++H LS ++ SD IAV+ G++VE G E+
Sbjct: 142 -VS---VQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEV 197
|
Length = 268 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-32
Identities = 64/273 (23%), Positives = 129/273 (47%), Gaps = 7/273 (2%)
Query: 686 LLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLL 745
L+ + I +GA + +G + + +S +SL L +AV LL
Sbjct: 2 LIAILLLILAGATALVFPLLLGRFLDSLIDGN---GDERSSLISLAILLIAVGVLQGLLL 58
Query: 746 QHYSF--SVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVG 803
Q + +G+++ KR+ LL +++ + +FD N+ + +RL + + +R +G
Sbjct: 59 QGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDT--NSVGELTSRLTNDVSKIRDGLG 116
Query: 804 DRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQ 863
D++ L Q++ V +IV W+LTLV++A+ PL+I ++ + K +KA
Sbjct: 117 DKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAY 176
Query: 864 KEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNT 923
+ +A E++ RT+ AF ++ L + + L ++ +K + +G+ +Q +
Sbjct: 177 AKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISY 236
Query: 924 ASTALAYWYGGRLLTQELITPEHLFQAFLILLF 956
S ALA W+G L+ ++ +F + L
Sbjct: 237 LSYALALWFGAYLVISGGLSVGTVFAFLSLGLQ 269
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 3e-32
Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 33/247 (13%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-- 1062
+I+++N+ F Y LK ++L I + A +G SGCGKST++ R Y+
Sbjct: 10 APSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELY 66
Query: 1063 P---LKGSVFMDEQDI--RNYNLKQLRSHIALVSQEPTLFAGTIRENIAYG--------- 1108
P +G + +D ++I ++ LR+ + +V Q+PT F +I +NIA+G
Sbjct: 67 PEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSR 126
Query: 1109 -KADAR-ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNP 1166
+ D R E + KAA L N +KD + G LSGGQ+QR+ +AR I P
Sbjct: 127 AEMDERVEWALTKAA-LWNE------VKDKL----HQSGYSLSGGQQQRLCIARGIAIRP 175
Query: 1167 SILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVE 1225
+LLLDE SALD +S ++E + ++ T V+V H + + SD A + G ++E
Sbjct: 176 EVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIE 235
Query: 1226 QGSHNEL 1232
G+ + +
Sbjct: 236 FGNTDTI 242
|
Length = 260 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 4e-32
Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 20/226 (8%)
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403
EIEF++V + S +L+ ++++ G +VG SG+GKST I L+ R DP EG
Sbjct: 3 EIEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
Query: 404 VLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAH 463
+L+DG I+ + + LR ++G+V Q+P LF ++ +NI +G ++ K +
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGP-------MLKGEKNVDVE 112
Query: 464 DF--ITKLPDGYETQ-VGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER 520
+ I L Y T+ V L SGG+ QR++IAR L +P++LLLDE TSALD S
Sbjct: 113 YYLSIVGLNKEYATRDVKNL----SGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTE 168
Query: 521 IVQEAIDKVSK--GRTTLIIAHRLSTI-RTANLIMVLKAGKVVESG 563
I++E I K+ T + I H + R + L G +VE
Sbjct: 169 IIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 4e-32
Identities = 70/229 (30%), Positives = 124/229 (54%), Gaps = 10/229 (4%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
I+++NV F+YP + LK +S +I G+ VA++G +G GKSTI +L P G +
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEP-TLFAG-TIRENIAYGKADARESEIKKAAVLANA 1126
+D I NLK++R I ++ Q P F G T+ ++IA+G + + K ++ +
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 1127 HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
+ + GM+D Y + LSGGQKQR+A+A + NP I++ DE+TS LD + +
Sbjct: 127 AKKV-GMED----YLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREI 181
Query: 1187 QEALEKM--MMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELV 1233
++ + + +T + + H + +D + V G+++ QG E++
Sbjct: 182 KKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEIL 230
|
Length = 271 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 122 bits (310), Expect = 5e-32
Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 44/221 (19%)
Query: 346 EFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVL 405
E ++ Y R VL L+L + AG+ VG++G +G+GKST + L P GE+L
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 406 LDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDF 465
LDG + L K L ++ V Q A +
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ---------------------------ALELLGLAHL 90
Query: 466 ITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEA 525
+ +L SGG++QR+ +ARAL ++P ILLLDE TS LD + + E
Sbjct: 91 ADR-------PFNEL----SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139
Query: 526 IDKVSK--GRTTLIIAHRLS-TIRTANLIMVLKAGKVVESG 563
+ ++++ G+T +++ H L+ R A+ +++LK G++V G
Sbjct: 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 5e-32
Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 11/217 (5%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW 418
+ L G++L + G+ L+G SG GK+T + L+ F P GE+LLDG I +L
Sbjct: 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI--TNLPP 69
Query: 419 LRSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQV 477
+ + V Q LF ++ ENI FG + + A A D + +L +GY +
Sbjct: 70 HKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLV-QL-EGYANRK 127
Query: 478 GQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTT 535
Q+SGGQ+QR+AIARAL+ +PK+LLLDE ALD + + +Q + ++ K G T
Sbjct: 128 PS---QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITF 184
Query: 536 LIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571
+ + H T ++ I V+ GK+ + G+ E+
Sbjct: 185 VFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 135 bits (340), Expect = 1e-31
Identities = 106/376 (28%), Positives = 178/376 (47%), Gaps = 55/376 (14%)
Query: 884 SSQKRILGLFKETLRGPKEESLKHSWYSGIGLFS---SQFFNTASTALAYWYGGRLLTQE 940
+ ++ G+ +E L+ K K ++ +G F+ + F T Y
Sbjct: 517 AFLDKVEGIRQEELKVLK----KSAYLHAVGTFTWVCTPFLVALITFAVYVT-------- 564
Query: 941 LITPEHLFQA---------FLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEI 991
+ ++ A F IL F ++ + S I + S +++ + L E+
Sbjct: 565 -VDENNILDAEKAFVSLALFNILRFPLNILPM---VISSIVQASVSLKRLRIFLSHE-EL 619
Query: 992 DPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKS 1051
+PDS + R IK I + N F + R L G++ I G VA+VGQ GCGKS
Sbjct: 620 EPDSIERRTIKPGEGNSITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGKS 678
Query: 1052 TIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKA- 1110
+++ L D ++G V M + +A V Q+ + ++RENI +GKA
Sbjct: 679 SLLSALLAEMDKVEGHVHM-------------KGSVAYVPQQAWIQNDSLRENILFGKAL 725
Query: 1111 --DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSI 1168
+ ++ A+L + SG + T GE+GV LSGGQKQR++LARA+ N I
Sbjct: 726 NEKYYQQVLEACALLPDLEILPSGDR----TEIGEKGVNLSGGQKQRVSLARAVYSNADI 781
Query: 1169 LLLDEATSALDS-VSESLVQEAL--EKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVE 1225
L D+ SA+D+ V + + + + E ++ +T ++V H +S + + D I V+ G++ E
Sbjct: 782 YLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISE 841
Query: 1226 QGSHNELVALSRGGAY 1241
GS+ EL L R GA+
Sbjct: 842 MGSYQEL--LQRDGAF 855
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 1e-31
Identities = 74/248 (29%), Positives = 115/248 (46%), Gaps = 38/248 (15%)
Query: 345 IEFRDVYFCYPSRPDTL-VLQGLNLRVPAGKSVGLVGGSGSGKST---TIALLQRFYDPV 400
+ R++ Y L ++L + G+++G+VG SGSGKST +A L++ P
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PS 60
Query: 401 EGEVLLDGYKIRRL-HLKWLRSQMGLVNQEPVL-------FATSITENILFGKDGASMDD 452
G +LLDG + K + +V Q+P ++E + S
Sbjct: 61 SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR 120
Query: 453 VISAAKAANAH-DFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEAT 511
+ F+ + P ++SGGQ+QRIAIARALI +PK+L+LDE T
Sbjct: 121 IAELLDQVGLPPSFLDRRPH-----------ELSGGQRQRIAIARALIPEPKLLILDEPT 169
Query: 512 SALDAQSERIVQEAI----DKVSKGR--TTLIIAHRLSTIRT-ANLIMVLKAGKVVESGS 564
SALD VQ I ++ K R T L I+H L+ + + I V+ G++VE G
Sbjct: 170 SALDV----SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGP 225
Query: 565 HNELMNRG 572
EL++
Sbjct: 226 TEELLSHP 233
|
Length = 252 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 1e-31
Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 26/222 (11%)
Query: 334 MGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALL 393
M ++ +I+ R++ F Y L+ +NL + + +G SG GKST +
Sbjct: 3 MMSMVATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTF 59
Query: 394 QRFYD--P---VEGEVLLDGYKI--RRLHLKWLRSQMGLVNQEPVLFATSITENILFGK- 445
R Y+ P EGE+LLDG I + + LR+++G+V Q+P F SI +NI FG
Sbjct: 60 NRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVR 119
Query: 446 -----DGASMDDVISAA--KAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARAL 498
A MD+ + A KAA L + + ++ Q G+ +SGGQ+QR+ IAR +
Sbjct: 120 LFEKLSRAEMDERVEWALTKAA--------LWNEVKDKLHQSGYSLSGGQQQRLCIARGI 171
Query: 499 IRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAH 540
P++LLLDE SALD S ++E I ++ + T +I+ H
Sbjct: 172 AIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-31
Identities = 72/242 (29%), Positives = 127/242 (52%), Gaps = 28/242 (11%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+E++N+ YP + LK ++L I G+ VA++G SG GKST++ + R +P GS+
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1069 FMDEQDIRNYN---LKQLRSHIALVSQEPTLFAG-TIRENIAYGKADAR----------- 1113
++ DI L++LR I ++ Q L T+ EN+ +G+ +
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 1114 ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDE 1173
E + ++A L+ G+ D R QLSGGQ+QR+A+ARA+ + P ++L DE
Sbjct: 120 EEDKERA--LSALERV--GLADKAYQ----RADQLSGGQQQRVAIARALAQQPDLILADE 171
Query: 1174 ATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHN 1230
++LD + V + L+++ G T ++ H++ +K +D I +K G +V G+ +
Sbjct: 172 PIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231
Query: 1231 EL 1232
EL
Sbjct: 232 EL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-31
Identities = 77/237 (32%), Positives = 127/237 (53%), Gaps = 23/237 (9%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IE D++F Y T L+GL+L +P G L+G +G+GKST + L Y P G V
Sbjct: 5 IEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEP--VLFATSITENILFG--KDGASMDDVIS----A 456
+ G ++ + KW+RS++GLV Q+P +F++++ +++ FG G D+V A
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 457 AKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDA 516
KA DF K P + +S GQK+R+AIA L DP +++LDE + LD
Sbjct: 123 LKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 517 QSERIVQEAIDKVSKGRTTLIIA-HRLS-TIRTANLIMVLKAGKVVESGSHNELMNR 571
+ + + E +D++ T+I+A H + A+ ++VLK G+V+ G + L +
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDE 228
|
Length = 274 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-31
Identities = 90/238 (37%), Positives = 127/238 (53%), Gaps = 33/238 (13%)
Query: 1009 IELKNVFFAYPTRPDQMI-LKGLSLKIEAGKTVALVGQSGCGKST---IIGLLERFYDPL 1064
IELKN+ +P + L +SL I AG+ ++G SG GKST I LLER P
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PT 58
Query: 1065 KGSVFMDEQDIRNYNLKQLRS---HIALVSQEPTLFAG-TIRENIAY-----GKADARES 1115
G V +D QD+ + K+LR I ++ Q L + T+ +N+A G A
Sbjct: 59 SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKA--- 115
Query: 1116 EIKK--AAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDE 1173
EIK +L + G+ D D Y QLSGGQKQR+A+ARA+ NP +LL DE
Sbjct: 116 EIKARVTELLE-----LVGLSDKADRY----PAQLSGGQKQRVAIARALASNPKVLLCDE 166
Query: 1174 ATSALDSVSESLVQEALEKM--MMGRTCVVVAHRLSTI-QKSDTIAVIKNGRVVEQGS 1228
ATSALD + + E L+ + +G T V++ H + + + D +AVI GR+VEQG+
Sbjct: 167 ATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
|
Length = 343 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 3e-31
Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 31/230 (13%)
Query: 360 TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGY--KIRRLHLK 417
+ ++ + G+++GLVG SGSGKST +L P G ++ DG + L+
Sbjct: 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELR 363
Query: 418 WLRSQMGLVNQEP---------VLFATSITENILF--GKDGASMDDVISAAKAANA--HD 464
LR ++ +V Q+P V + E + G GA ++ +
Sbjct: 364 RLRRRIQMVFQDPYSSLNPRMTVGDI--LAEPLRIHGGGSGAERRARVAELLELVGLPPE 421
Query: 465 FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE 524
F+ + P ++SGGQ+QR+AIARAL +PK+L+LDE SALD + V
Sbjct: 422 FLDRYPH-----------ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
Query: 525 AIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNR 571
+ + + G T L I+H L+ +R A+ + V+ G++VE G ++
Sbjct: 471 LLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 4e-31
Identities = 75/247 (30%), Positives = 128/247 (51%), Gaps = 41/247 (16%)
Query: 1009 IELKNVFFAYPTRPDQMI--------LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERF 1060
+ ++N+ Y +R + + +S + G+T+ LVG+SG GKST+ +L
Sbjct: 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340
Query: 1061 YDPLKGSVFMDEQDIRNY--NLKQLRSHIALVSQEPTLFAG-----TIRENIA-----YG 1108
P GS+ D QD+ L++LR I +V Q+P ++ T+ + +A +G
Sbjct: 341 LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP--YSSLNPRMTVGDILAEPLRIHG 398
Query: 1109 KADARESEIKKAAVLANAHEFISGMKDGY-DTYCGERGVQLSGGQKQRIALARAILKNPS 1167
E + A +A E + G+ + D Y E LSGGQ+QR+A+ARA+ P
Sbjct: 399 GGSGAE----RRARVAELLELV-GLPPEFLDRYPHE----LSGGQRQRVAIARALALEPK 449
Query: 1168 ILLLDEATSALD-----SVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNG 1221
+L+LDE SALD V L ++ E+ +G T + ++H L+ ++ +D +AV+ +G
Sbjct: 450 LLILDEPVSALDVSVQAQVLNLL-KDLQEE--LGLTYLFISHDLAVVRYIADRVAVMYDG 506
Query: 1222 RVVEQGS 1228
R+VE+G
Sbjct: 507 RIVEEGP 513
|
Length = 539 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 5e-31
Identities = 76/244 (31%), Positives = 134/244 (54%), Gaps = 33/244 (13%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL---- 1064
IE++N F AY ++ +K +++KI + A++G SGCGK+T++ + R D +
Sbjct: 4 IEIEN-FSAY--YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 1065 -KGSVFMDEQDIRN--YNLKQLRSHIALVSQEPTLFAGTIRENIAYG------KADAR-- 1113
+G ++ QDI + ++ + R + +V Q+PT F +I +N+A+G K+ +
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 1114 ---ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILL 1170
E +KKAA+ D + + G +LSGGQ+QR+ +ARA+ P ++L
Sbjct: 121 RIVEESLKKAALW-----------DEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVIL 169
Query: 1171 LDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLS-TIQKSDTIAVIKNGRVVEQGSH 1229
LDE TSALD ++ +++ LE++ T V+V H + I+ +D IA + G ++E G
Sbjct: 170 LDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPT 229
Query: 1230 NELV 1233
E+V
Sbjct: 230 REIV 233
|
Length = 250 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 5e-31
Identities = 80/229 (34%), Positives = 124/229 (54%), Gaps = 17/229 (7%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD----- 1062
+I+ ++V F Y D LKG+S++IE VA +G SGCGKST + L R D
Sbjct: 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59
Query: 1063 PLKGSVFMDEQDI--RNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKA 1120
L+G + +D ++I + + +LR ++ +V Q P F +I EN+AYG R + +K
Sbjct: 60 RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYG---LRVNGVKDN 116
Query: 1121 AVLAN-AHEFISG--MKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSA 1177
A + E + G + D E LSGGQ+QR+ +ARA+ +PS+LL+DE SA
Sbjct: 117 AFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASA 176
Query: 1178 LDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVE 1225
LD +S + V+E + ++ T V+V H + + SD A G +VE
Sbjct: 177 LDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225
|
Length = 250 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 6e-31
Identities = 74/239 (30%), Positives = 126/239 (52%), Gaps = 26/239 (10%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IEF +V Y ++ + +NL + G+ + L+G SGSGK+TT+ ++ R +P GE+
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFA-TSITENI-----LFGKDGASMDDVISAAK 458
L+DG I L LR ++G V Q+ LF ++ ENI L G D +
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELL 118
Query: 459 AA---NAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD 515
+ ++ + P ++SGGQ+QR+ +ARAL DP ILL+DE ALD
Sbjct: 119 DLVGLDPSEYADRYPH-----------ELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
Query: 516 AQSERIVQEAIDKVSK--GRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELMNR 571
+ + +QE I ++ K G+T + + H + ++ A+ I V+ AG++V+ + +E++
Sbjct: 168 PITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
|
Length = 309 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 6e-31
Identities = 62/259 (23%), Positives = 118/259 (45%), Gaps = 54/259 (20%)
Query: 1009 IELKNVFFAYPTRP-DQMILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDP 1063
+E+KN+ ++PT + G+S +++ G+ + +VG+SG GKS I+GLL
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLP--KPN 59
Query: 1064 LK---GSVFMDEQDIRNYNLKQLR----SHIALVSQEP-----------TLFAGTIRENI 1105
+ G + D +D+ + + K+LR IA++ Q+P A +R +
Sbjct: 60 ARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG 119
Query: 1106 AYGKADARESE---------IKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRI 1156
+ I ++ +LSGG +QR+
Sbjct: 120 KGLSKKEAKERAIELLELVGIPDPERRLKSYPH-----------------ELSGGMRQRV 162
Query: 1157 ALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTI-QKSD 1213
+A A+ NP +L+ DE T+ALD ++ + + L+++ G +++ H L + + +D
Sbjct: 163 MIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIAD 222
Query: 1214 TIAVIKNGRVVEQGSHNEL 1232
+AV+ GR+VE+G E+
Sbjct: 223 RVAVMYAGRIVEEGPVEEI 241
|
Length = 316 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 8e-31
Identities = 70/219 (31%), Positives = 115/219 (52%), Gaps = 21/219 (9%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL--- 1083
+ L I G+ ++G SG GKST + +L R +P G +F+D ++I + +L
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 1084 -RSHIALVSQEPTLFAG-TIRENIAYG----KADARESEIKKAAVLANAHEFISGMKDGY 1137
R I +V Q+ LF TI +N + G +E + K +L + G+++
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLK-----LVGLEEYE 123
Query: 1138 DTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--M 1195
Y E LSGG +QR+ LARA+ P ILL+DEA SALD + +Q+ L+K+ +
Sbjct: 124 HRYPDE----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL 179
Query: 1196 GRTCVVVAHRL-STIQKSDTIAVIKNGRVVEQGSHNELV 1233
+T V + H L I+ D I ++K G +V+ G+ +E++
Sbjct: 180 QKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 8e-31
Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 22/218 (10%)
Query: 349 DVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDG 408
++ F Y + T +L L+L + AG+ + L G +G+GK+T +L G +LL+G
Sbjct: 4 NISFSY--KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 409 YKIRRLHLKWLRSQMGLVNQEP--VLFATSITENILFGKDGASMDDVISAA--KAANAHD 464
+ + K R +G V Q+ LF S+ E +L G + + K + +
Sbjct: 62 ---KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA 118
Query: 465 FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE 524
+ P +SGGQKQR+AIA AL+ +L+ DE TS LD ++ V E
Sbjct: 119 LKERHP-----------LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE 167
Query: 525 AIDKVSK-GRTTLIIAHRLSTI-RTANLIMVLKAGKVV 560
I +++ G+ ++I H + + + +++L G +V
Sbjct: 168 LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 9e-31
Identities = 66/251 (26%), Positives = 124/251 (49%), Gaps = 39/251 (15%)
Query: 1009 IELKNVFFAYPTRPDQM-ILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDP 1063
+E++N+ + T ++ ++ +S ++E G+ + +VG+SG GKST ++GLL
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 1064 LKGSVFMDEQDIRNYNLKQLRS----HIALVSQEP-TLFAGT------IRENIAYGKADA 1112
G V +D +D+ + +++R IA++ Q+P T IRE + +
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 1113 RESEIKKAAV-------LANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKN 1165
R E +K AV L + +D Y QLSGG +QR+ +A A+
Sbjct: 126 RA-EARKRAVELLEQVGLPDPE-----RRDRYPH-------QLSGGMRQRVMIAMALALK 172
Query: 1166 PSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTI-QKSDTIAVIKNGR 1222
P +L+ DE T+ALD +++ + + L+ + +G + + H L + + +D + V+ G
Sbjct: 173 PKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGE 232
Query: 1223 VVEQGSHNELV 1233
+VE G E++
Sbjct: 233 IVETGPTEEIL 243
|
Length = 539 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 1e-30
Identities = 70/225 (31%), Positives = 116/225 (51%), Gaps = 25/225 (11%)
Query: 360 TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL 419
T+ + ++L V G+ ++G SGSGKST + + R +P G+VL+DG I + K L
Sbjct: 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKEL 96
Query: 420 ----RSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANA------HDFITK 468
R ++ +V Q L ++ EN+ FG + + +AA A + K
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK 156
Query: 469 LPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDK 528
PD ++SGG +QR+ +ARAL DP ILL+DEA SALD R +Q+ + +
Sbjct: 157 YPD-----------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLR 205
Query: 529 VSK--GRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELMN 570
+ +T + I H L +R + I ++K G++V+ G+ E++
Sbjct: 206 LQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 78/238 (32%), Positives = 121/238 (50%), Gaps = 26/238 (10%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----P 1063
IE ++F+ + LK ++L I A + AL+G SGCGKST++ L R D
Sbjct: 6 IENLDLFYG-----ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK 60
Query: 1064 LKGSVFMDEQDI-RNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAV 1122
+ G + MD +DI N ++ LR + +V Q+P F +I EN+AYG R IK V
Sbjct: 61 ITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYG---LRAQGIKDKKV 117
Query: 1123 LANA-HEFISG------MKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEAT 1175
L + G +KD ++ LSGGQ+QR+ +AR I P ++L+DE T
Sbjct: 118 LDEVVERSLRGAALWDEVKDRLKSH----AFGLSGGQQQRLCIARTIAMEPDVILMDEPT 173
Query: 1176 SALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
SALD ++ ++E +E++ T V+V H + ++ SD A G +VE +
Sbjct: 174 SALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231
|
Length = 249 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-30
Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 26/241 (10%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IE+KN+ YP LK ++L+I G+ VA++G SG GKST++ L DP G +
Sbjct: 4 IEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 1069 FMDEQDIRNYN---LKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIK------ 1118
+ I L++LR I ++ Q+ L ++ EN+ G+ S +
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGR-LGYTSTWRSLFGLF 120
Query: 1119 ----KAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEA 1174
KA L G+ D +R LSGGQ+QR+A+ARA+++ P I+L DE
Sbjct: 121 SKEDKAQALDALERV--GILD----KAYQRASTLSGGQQQRVAIARALVQQPKIILADEP 174
Query: 1175 TSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNE 1231
++LD S V + L+ + G T +V H++ +K +D I +K GR+V G +E
Sbjct: 175 VASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASE 234
Query: 1232 L 1232
L
Sbjct: 235 L 235
|
Length = 258 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 75/242 (30%), Positives = 131/242 (54%), Gaps = 7/242 (2%)
Query: 1007 GRIELKNVFFAYPT--RPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
G I++ ++ Y +P +LK + I+ G+ V + G++G GKS++ R D
Sbjct: 18 GEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74
Query: 1065 KGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLA 1124
G + +D DI L LRS ++++ Q+P LF+G+IR N+ + + + +A +A
Sbjct: 75 DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLD-PECKCTDDRLWEALEIA 133
Query: 1125 NAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSES 1184
+ + G D E G S GQ+Q LARA ++ SIL++DEAT+++D +E+
Sbjct: 134 QLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193
Query: 1185 LVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSL 1244
++Q+ + RT V +AHR+STI +D + V+ G +VE + L+A G + SL
Sbjct: 194 ILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLA-QEDGVFASL 252
Query: 1245 IK 1246
++
Sbjct: 253 VR 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-30
Identities = 65/223 (29%), Positives = 116/223 (52%), Gaps = 17/223 (7%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IEF +V YP T L G+N+ + AG+ V LVG SG+GKST + L+ + P G +
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 405 LLDGYKIRRLH---LKWLRSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAA 460
++G + L + +LR ++G+V Q+ L ++ EN+ F ++ ++
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAF-----AL--EVTGVPPR 111
Query: 461 NAHDFITKLPD--GYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS 518
+ + G + L ++SGG++QR+AIARA++ P IL+ DE T LD +
Sbjct: 112 EIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDT 171
Query: 519 ERIVQEAIDKVSKGRTTLIIAHRLSTI--RTANLIMVLKAGKV 559
+ + K++K TT+++A + T + ++ L+ GK+
Sbjct: 172 TWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 25/224 (11%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDI--RNY 1078
IL ++L I + A +G SGCGKST + R D +KG + +D D+ +
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 1079 NLKQLRSHIALVSQEPTLFAGTIRENIAYG-------KADARESEIKKAAVLANA--HEF 1129
N+ LR+ + +V Q+P F +I +N+AYG K + EI + ++ + E
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL 139
Query: 1130 ISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEA 1189
+KD +LSGGQ+QR+ +ARAI P++LL+DE SALD V+ ++++
Sbjct: 140 GDRLKDS--------AFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENL 191
Query: 1190 LEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
++++ T +VV H + +K SD +A ++GR+VE + E+
Sbjct: 192 IQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235
|
Length = 251 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 3e-30
Identities = 64/223 (28%), Positives = 109/223 (48%), Gaps = 26/223 (11%)
Query: 1010 ELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVF 1069
++N+ F+Y + IL LSL + AG+ +AL G++G GK+T+ +L GS+
Sbjct: 1 RIENISFSY--KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 1070 MDEQDIRNYNLKQLRSHIALVSQEPT--LFAGTIRENIAYGKADARESEIKKAAVLANAH 1127
++ + I K+ R I V Q+ LF ++RE + G + + VL +
Sbjct: 59 LNGKPI---KAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLD 115
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD-----SVS 1182
+ +K+ + LSGGQKQR+A+A A+L +L+ DE TS LD V
Sbjct: 116 --LYALKERHPL-------SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG 166
Query: 1183 ESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVV 1224
E + + A + G+ +V+ H + K D + ++ NG +V
Sbjct: 167 ELIRELAAQ----GKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 3e-30
Identities = 71/232 (30%), Positives = 123/232 (53%), Gaps = 33/232 (14%)
Query: 1010 ELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPLK 1065
E++++ +Y P +L+ +S +++ G+ +A+VG +G GKST I+GLL+ P
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK----PTS 53
Query: 1066 GSVFMDEQDIRNYNLKQLRSHIALVSQEPTL---FAGTIRENIA---YGKADA--RESEI 1117
GS+ + + + + R I V Q ++ F ++R+ + YG R S+
Sbjct: 54 GSIRVFGKPLE-----KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKA 108
Query: 1118 KKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSA 1177
KA V A E + G+ + D GE LSGGQ+QR+ LARA++++P +LLLDE +
Sbjct: 109 DKAKVDE-ALERV-GLSELADRQIGE----LSGGQQQRVLLARALVQDPDLLLLDEPFAG 162
Query: 1178 LDSVSESLVQEALEKM-MMGRTCVVVAHRLSTIQKS-DTIAVIKNGRVVEQG 1227
+D ++ + E L ++ G T +VV H L + + D + ++ N VV G
Sbjct: 163 VDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 3e-30
Identities = 78/237 (32%), Positives = 118/237 (49%), Gaps = 43/237 (18%)
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLK-----GSVFMDEQDI-- 1075
D LKG+S+ I AL+G SGCGKST + L R D +K GSV +D QDI
Sbjct: 57 DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116
Query: 1076 RNYNLKQLRSHIALVSQEPTLFAGTIRENIAYG-------------------KADAR--- 1113
NL +LR + +V Q P F +IRENI+YG DA
Sbjct: 117 DGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDEL 176
Query: 1114 -ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLD 1172
E +++AA+ ++ + + + LSGGQ+QR+ +AR + +P ++L+D
Sbjct: 177 VERSLRQAALWDEVNDRL-----------DDNALGLSGGQQQRLCIARCLAVDPEVILMD 225
Query: 1173 EATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAV-IKNGRVVEQG 1227
E SALD ++ S +++ +E++ T VVV H + + SD AV + G +VE
Sbjct: 226 EPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYD 282
|
Length = 305 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 4e-30
Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 30/231 (12%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTT----IALLQRFYDPVEGEVLLDGYKIRRLHLK 417
++ ++ V G+ +G+VG SGSGKST + LL GEV+LDG + L +
Sbjct: 24 AVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83
Query: 418 WLRSQMG----LVNQEPVLFATS----------ITENILFGKDGASMDDVISAAKAANAH 463
+R G ++ Q+P TS I E + G+ + +A
Sbjct: 84 EMRKLRGKRIAMIFQDP---MTSLNPVMTIGDQIREALRLHGKGSRAEA---RKRAVELL 137
Query: 464 DFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQ 523
+ LPD E + + Q+SGG +QR+ IA AL PK+L+ DE T+ALD ++ +
Sbjct: 138 E-QVGLPDP-ERR-DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQIL 194
Query: 524 EAIDKVSK--GRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNR 571
+ + + + G L I H L + A+ ++V+ G++VE+G E+++
Sbjct: 195 DLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-30
Identities = 77/243 (31%), Positives = 124/243 (51%), Gaps = 33/243 (13%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL---- 1064
+E++N+ Y D+ L +S++I + A +G SGCGKST++ R D +
Sbjct: 26 LEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 1065 -KGSVFMDEQDI--RNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKA----------- 1110
+G + +D Q+I + ++ +LR + +V Q P F +I EN+ YG
Sbjct: 83 IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLD 142
Query: 1111 DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILL 1170
+A E ++ AA+ E +KD E LSGGQ+QR+ +ARAI P +LL
Sbjct: 143 EAVERSLRGAALW---DE----VKDRLH----ENAFGLSGGQQQRLVIARAIAIEPEVLL 191
Query: 1171 LDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSH 1229
LDE TSALD +S ++E + ++ T V+V H + + SD A + G++VE G
Sbjct: 192 LDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDT 251
Query: 1230 NEL 1232
+ L
Sbjct: 252 DTL 254
|
Length = 272 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 5e-30
Identities = 74/236 (31%), Positives = 131/236 (55%), Gaps = 16/236 (6%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+E ++ YP+ L+ +NL + G+ V ++G SG+GKST + + R +P G +
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 405 LLDGYKIRRLH---LKWLRSQMGLVNQEPVLFA-TSITENILFGKDGA-----SMDDVIS 455
LL+G I +L L+ LR ++G++ Q L ++ EN+L G+ G S+ S
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 456 AAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD 515
A + ++ G + Q Q+SGGQ+QR+AIARAL + P ++L DE ++LD
Sbjct: 120 EEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLD 177
Query: 516 AQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNEL 568
++ + V + + +++K G T +I H++ + A+ I+ LKAG++V G+ +EL
Sbjct: 178 PKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 6e-30
Identities = 64/203 (31%), Positives = 111/203 (54%), Gaps = 17/203 (8%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IE ++++ + VL+G++L V G+ V ++G SGSGKST + + +P G +
Sbjct: 1 IEIKNLHKSFGDFH---VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 405 LLDGYKI--RRLHLKWLRSQMGLVNQEPVLFA-TSITENILFGK---DGASMDDVISAAK 458
++DG K+ + ++ LR ++G+V Q+ LF ++ ENI G S +
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAE---- 113
Query: 459 AANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS 518
A + + K+ G + Q+SGGQ+QR+AIARAL +PK++L DE TSALD +
Sbjct: 114 -ERALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPEL 170
Query: 519 ERIVQEAIDKVSK-GRTTLIIAH 540
V + + +++ G T +++ H
Sbjct: 171 VGEVLDVMKDLAEEGMTMVVVTH 193
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 35/245 (14%)
Query: 1008 RIELK--NVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL- 1064
RIE++ N +F D ILK ++L I AL+G SGCGKST I L R D +
Sbjct: 3 RIEVENLNTYF-----DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIP 57
Query: 1065 ----KGSVFMDEQDIRNYNLK--QLRSHIALVSQEPTLFAGTIRENIAYG---------- 1108
+G +++D DI + + +LR + +V Q+P F +I +N+AYG
Sbjct: 58 GFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDED 117
Query: 1109 KADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSI 1168
+ R E KAA L + +KD D + + LSGGQ+QR+ +AR I +P +
Sbjct: 118 FIEERVEESLKAAALWDE------VKDKLD----KSALGLSGGQQQRLCIARTIAVSPEV 167
Query: 1169 LLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227
+L+DE SALD +S + +++ + K+ T V+V H + + S + NG ++E G
Sbjct: 168 ILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESG 227
Query: 1228 SHNEL 1232
+++
Sbjct: 228 LTDQI 232
|
Length = 250 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 3e-29
Identities = 79/227 (34%), Positives = 122/227 (53%), Gaps = 34/227 (14%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV-----EGEVLLDGYKI--RRLH 415
L+ +NL + + L+G SG GKST + L R D + EGEVLLDG I +
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 416 LKWLRSQMGLVNQEPVLFATSITENILFG------KDGASMDDVI--SAAKAANAHDFIT 467
+ LR ++G+V Q+P F SI +N+ +G KD +D+++ S AA
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAA------- 131
Query: 468 KLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAID 527
L D + ++ + +SGGQ+QR+ IARAL +P++LL+DE TSALD S ++E I
Sbjct: 132 -LWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQ 190
Query: 528 KVSKGRTTLIIAH------RLSTIRTANLIMVLKAGKVVESGSHNEL 568
++ K T +I+ H R+S +TA + G++VE G +L
Sbjct: 191 ELKKDYTIVIVTHNMQQASRISD-KTAFFLN----GEIVEFGDTVDL 232
|
Length = 250 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 3e-29
Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 29/226 (12%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG-----EVLLDGYKI-RRLHL 416
L+ +NL +PA + L+G SG GKST + L R D +EG ++ +DG I + +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 417 KWLRSQMGLVNQEPVLFATSITENILFG------KDGASMDDVISAAKAANAHDFITKLP 470
LR ++G+V Q+P F SI EN+ +G KD +D+V+ + A L
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAA------LW 132
Query: 471 DGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS 530
D + ++ F +SGGQ+QR+ IAR + +P ++L+DE TSALD + ++E ++++
Sbjct: 133 DEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK 192
Query: 531 KGRTTLIIAH------RLSTIRTANLIMVLKAGKVVESGSHNELMN 570
K T +I+ H R+S RTA +M G++VE + +
Sbjct: 193 KNYTIVIVTHSMQQARRISD-RTAFFLM----GELVEHDDTQVIFS 233
|
Length = 249 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 3e-29
Identities = 85/248 (34%), Positives = 126/248 (50%), Gaps = 35/248 (14%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
M I K+V +Y + L G+SL E + AL+G SGCGKST + L R D +
Sbjct: 1 MENIISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDI 57
Query: 1065 K-----GSVFMDEQDI--RNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKA------- 1110
+ G + + Q+I +L +LR + +V Q+PT F ++ +N+AYG
Sbjct: 58 ENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDK 117
Query: 1111 ---DAR-ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQ-LSGGQKQRIALARAILKN 1165
D R E +K+AA+ KD D R Q SGGQ+QRI +ARA+
Sbjct: 118 ELIDQRVEESLKQAAIWKET-------KDNLD-----RNAQAFSGGQQQRICIARALAVR 165
Query: 1166 PSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVV 1224
P ++LLDE TSALD +S S ++E L ++ T ++V H L + SD A + NG ++
Sbjct: 166 PKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLI 225
Query: 1225 EQGSHNEL 1232
E G E+
Sbjct: 226 EAGPTEEM 233
|
Length = 251 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 3e-29
Identities = 76/223 (34%), Positives = 113/223 (50%), Gaps = 26/223 (11%)
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ 1082
+ IL LSL + GK AL+G +GCGKST++ R P G+VF+ ++ I + +Q
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73
Query: 1083 LRSHIALVSQEPTLFAG-TIRENIAYGKAD-----ARESEIKKAAVLANAHEFISGMKDG 1136
L +AL+ Q G T+RE +AYG++ R S A V A E +
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARV-NQAME-----QTR 127
Query: 1137 YDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-- 1194
+ R LSGGQ+QR LA + ++ ++LLDE T+ LD ++ Q L ++M
Sbjct: 128 INHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD-INH---QVELMRLMRE 183
Query: 1195 ---MGRTCVVVAHRLSTIQKS---DTIAVIKNGRVVEQGSHNE 1231
G+T V V H L+ Q S D + V+ NG V+ QG+ E
Sbjct: 184 LNTQGKTVVTVLHDLN--QASRYCDHLVVLANGHVMAQGTPEE 224
|
Length = 255 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 4e-29
Identities = 80/245 (32%), Positives = 125/245 (51%), Gaps = 37/245 (15%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV---- 400
+E R++ Y D L +++R+P + +G SG GKST + R D V
Sbjct: 26 LEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 401 -EGEVLLDGYKI--RRLHLKWLRSQMGLVNQEPVLFATSITENILFG------KDGASMD 451
EGE+ LDG I +++ + LR ++G+V Q P F SI EN+++G + +D
Sbjct: 83 IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLD 142
Query: 452 DVI--SAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDE 509
+ + S AA + +L + F +SGGQ+QR+ IARA+ +P++LLLDE
Sbjct: 143 EAVERSLRGAALWDEVKDRLHEN--------AFGLSGGQQQRLVIARAIAIEPEVLLLDE 194
Query: 510 ATSALDAQSERIVQEAIDKVSKGRTTLIIAH------RLSTIRTANLIMVLKAGKVVESG 563
TSALD S ++E I ++ T +I+ H R+S TA + M GK+VE G
Sbjct: 195 PTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSD-YTAFMYM----GKLVEYG 249
Query: 564 SHNEL 568
+ L
Sbjct: 250 DTDTL 254
|
Length = 272 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 6e-29
Identities = 62/233 (26%), Positives = 111/233 (47%), Gaps = 35/233 (15%)
Query: 346 EFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVL 405
E D+ Y P VL+ ++ V G+ + +VG +G+GKST + + P G +
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 406 LDGYKIRRLHLKWLRSQMGLVNQEPVL---FATSITENILFGKDG----------ASMDD 452
+ G + + R ++G V Q + F S+ + +L G G A
Sbjct: 58 VFGKPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112
Query: 453 VISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATS 512
V A + + + Q+G+L SGGQ+QR+ +ARAL++DP +LLLDE +
Sbjct: 113 VDEALERVGLSELADR-------QIGEL----SGGQQQRVLLARALVQDPDLLLLDEPFA 161
Query: 513 ALDAQSERIVQEAIDKV-SKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESG 563
+D +++ + E + ++ +G T L++ H L + + +++L VV SG
Sbjct: 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLN-RTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 7e-29
Identities = 64/242 (26%), Positives = 114/242 (47%), Gaps = 33/242 (13%)
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403
IE ++ Y +RP VL+ ++L V G+ L+G +G+GKST + + P GE
Sbjct: 4 MIEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
Query: 404 VLLDGYKIRRLHLKWLRSQMGLV-NQEPVLFATSIT-----------ENILFGKDGASMD 451
+ + G K R K LR +G V + V + IT + F +
Sbjct: 61 IKIFG-KPVRKRRKRLR--IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117
Query: 452 DVISAA-KAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEA 510
+ + A + D + Q+G+L SGGQKQR+ +ARAL ++P +LLLDE
Sbjct: 118 EKVDEALERVGMEDLRDR-------QIGEL----SGGQKQRVLLARALAQNPDLLLLDEP 166
Query: 511 TSALDAQSERIVQEAIDK-VSKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNEL 568
+ +D ++ + + + + +G+T L++ H L + + ++ L ++ SG E+
Sbjct: 167 FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEV 225
Query: 569 MN 570
+
Sbjct: 226 LT 227
|
Length = 254 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 8e-29
Identities = 79/242 (32%), Positives = 125/242 (51%), Gaps = 41/242 (16%)
Query: 345 IEFRDVYFCYPSRPDTLV-LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403
IE +++ +P T+ L ++L +PAG+ G++G SG+GKST I + P G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 404 VLLDGYKIRRL---HLKWLRSQMGLVNQEPVLFATSIT--ENILF-----GKDGASMDDV 453
VL+DG + L L+ R Q+G++ Q L + S T +N+ G A +
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLS-SRTVFDNVALPLELAGTPKAEIKAR 120
Query: 454 IS--------AAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKIL 505
++ + KA D Y Q +SGGQKQR+AIARAL +PK+L
Sbjct: 121 VTELLELVGLSDKA-----------DRYPAQ-------LSGGQKQRVAIARALASNPKVL 162
Query: 506 LLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTI-RTANLIMVLKAGKVVES 562
L DEATSALD + R + E + +++ G T ++I H + + R + + V+ AG++VE
Sbjct: 163 LCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222
Query: 563 GS 564
G+
Sbjct: 223 GT 224
|
Length = 343 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 8e-29
Identities = 73/236 (30%), Positives = 117/236 (49%), Gaps = 36/236 (15%)
Query: 1013 NVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL-----KGS 1067
+VF+ ++ L + L I A +G SGCGKST + L R D + G
Sbjct: 26 SVFYG-----EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGK 80
Query: 1068 VFMDEQDI--RNYNLKQLRSHIALVSQEPTLFAGTIRENIAYG---------KADAR--- 1113
+ +D +DI ++ +LR+ + +V Q+P F +I EN+AYG KA+
Sbjct: 81 ITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIV 140
Query: 1114 ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDE 1173
E+ ++KA + KD E G LSGGQ+QR+ +ARAI +P ++L+DE
Sbjct: 141 ETSLRKAGLWEEV-------KD----RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDE 189
Query: 1174 ATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGS 1228
SALD ++ + V+E ++++ T V+V H + + S A G +VE G
Sbjct: 190 PCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245
|
Length = 267 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 8e-29
Identities = 69/205 (33%), Positives = 114/205 (55%), Gaps = 11/205 (5%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
LK +SL++E G ++G +G GKS ++ + F P G + ++ +DI N L +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITN--LPPEKRD 72
Query: 1087 IALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERG 1145
I+ V Q LF T+ +NIAYG ++ ++ K + E I+ M G D +
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAYG---LKKRKVDKKEIERKVLE-IAEML-GIDHLLNRKP 127
Query: 1146 VQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVA 1203
LSGG++QR+A+ARA++ NP ILLLDE SALD ++ ++E L+K+ G T + V
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVT 187
Query: 1204 HRLSTIQK-SDTIAVIKNGRVVEQG 1227
H +D +A++ NG++++ G
Sbjct: 188 HDFEEAWALADKVAIMLNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 9e-29
Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 15/229 (6%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
M IE++++ F Y + LKGLSL I G AL+G +G GKST++ L Y P
Sbjct: 1 MDNIIEVEDLHFRY--KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ 58
Query: 1065 KGSVFMDEQDIRNYNLKQLRSHIALVSQEP--TLFAGTIRENIAYGKADARESEIKKAAV 1122
+G V + +++ N K +RS + LV Q+P +F+ T+ +++A+G + K V
Sbjct: 59 RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFG---PVNMGLDKDEV 115
Query: 1123 LANAHEFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS 1180
E + M D D + LS GQK+R+A+A + +P +++LDE + LD
Sbjct: 116 ERRVEEALKAVRMWDFRD----KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 1181 VSESLVQEALEKM-MMGRTCVVVAHRLS-TIQKSDTIAVIKNGRVVEQG 1227
+ + E L+++ G+T +V H + + +D + V+K GRV+ +G
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 9e-29
Identities = 66/214 (30%), Positives = 103/214 (48%), Gaps = 22/214 (10%)
Query: 1027 LKGLSLKIE---AGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQ---DIR-NYN 1079
L +LKI+ + + G SG GKST++ + P G++ ++ D R N
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 1080 LKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKK--AAVLANAHEFISGMKDG 1136
L + I LV Q+ LF +REN+A+G R E + +L + + +
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLG--LDHLLNR 127
Query: 1137 YDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-- 1194
Y QLSGG+KQR+ALARA+ P +LLLDE SALD + L+++
Sbjct: 128 YPA-------QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN 180
Query: 1195 MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227
+ + V H LS + +D I V+++GR+ G
Sbjct: 181 LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-28
Identities = 68/237 (28%), Positives = 113/237 (47%), Gaps = 29/237 (12%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
I F +V YP L+ ++ +P G+ V L G SG+GKST + L+ P G++
Sbjct: 2 IRFENVSKAYPG--GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 405 LLDGY---KIRRLHLKWLRSQMGLVNQEPVLFAT-SITENILF-----GKDGASM-DDVI 454
L++G+ +++ + +LR Q+G+V Q+ L ++ EN+ GK + V
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 455 SAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSAL 514
LP Q+SGG++QR+AIARA++ P +LL DE T L
Sbjct: 120 EVLDLVGLKHKARALPS-----------QLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 515 D-AQSERIVQ--EAIDKVSKGRTTLIIAHRLSTIRTANL-IMVLKAGKVVESGSHNE 567
D S I++ E I+++ G T L+ H L + ++ L+ G++V S
Sbjct: 169 DPDLSWEIMRLFEEINRL--GTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 71/218 (32%), Positives = 110/218 (50%), Gaps = 30/218 (13%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL-----KGSVFMDEQDI--RNYN 1079
+KG+ ++ E K AL+G SG GKST + L R D + G + DI + N
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 1080 LKQLRSHIALVSQEPTLFAGTIRENIAY-----GKADAR------ESEIKKAAVLANAHE 1128
+ ++R HI +V Q P FA +I ENI + G D + E+ +K+AA+
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQ--- 152
Query: 1129 FISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQE 1188
+KD + + LSGGQ+QR+ +ARAI P ILL+DE SALD +S ++E
Sbjct: 153 ----VKDDLH----KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEE 204
Query: 1189 ALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVE 1225
+ ++ T ++V H + + SD A G ++E
Sbjct: 205 TMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE 242
|
Length = 267 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-28
Identities = 76/238 (31%), Positives = 116/238 (48%), Gaps = 31/238 (13%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST---IIGLLERFYDPLK 1065
I + NV + L +SL I++G+ VAL+G SG GKST II LE P
Sbjct: 3 IRINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDA 56
Query: 1066 GSVFMDEQDIRNYNLKQLRSH---IALVSQEPTLFAG-TIRENIAYGKADARESEIKKAA 1121
G + ++ + + +++ L + V Q LF T+ +NIA+G R+ +A
Sbjct: 57 GRIRLNGRVL--FDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFG-LKVRKERPSEAE 113
Query: 1122 VLANAHEFI-----SGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATS 1176
+ A E + G+ D Y QLSGGQ+QR+ALARA+ P +LLLDE
Sbjct: 114 IRARVEELLRLVQLEGLADRYPA-------QLSGGQRQRVALARALAVEPKVLLLDEPFG 166
Query: 1177 ALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNE 1231
ALD+ ++ L K+ +G T V V H + +D + V+ GR+ + G +E
Sbjct: 167 ALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224
|
Length = 345 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-28
Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 11/227 (4%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
++++N+ Y + + LSL + G+ L+G +G GK+T + +L P G+
Sbjct: 1 LQIRNLTKTYKKGT-KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIA-YGKADARESEIKKAAVLANA 1126
+++ IR + K R + Q LF T+RE++ Y + K V
Sbjct: 60 YINGYSIR-TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLL 118
Query: 1127 HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
G+ D + LSGG K++++LA A++ PS+LLLDE TS LD S +
Sbjct: 119 RVL--GLTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAI 172
Query: 1187 QEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
+ + ++ GR+ ++ H + + D IA++ +G++ GS EL
Sbjct: 173 WDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 83/240 (34%), Positives = 118/240 (49%), Gaps = 38/240 (15%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----P 1063
I L+NV +Y +K + I GK AL+G SGCGKST++ L R D
Sbjct: 14 ISLQNVTISYG---TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70
Query: 1064 LKGSVFMDEQDIRNYNLK--QLRSHIALVSQEPTLFAGTIRENIAYGKADAR-------- 1113
LKG V D D+ + + ++R I +V Q+P F +I ENIA+G AR
Sbjct: 71 LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG---ARINGYTGDM 127
Query: 1114 ----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSIL 1169
E ++KAAV KD + E G LSGGQ+QR+ +AR I P ++
Sbjct: 128 DELVERSLRKAAVWDEC-------KDKLN----ESGYSLSGGQQQRLCIARTIAIEPEVI 176
Query: 1170 LLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRL-STIQKSDTIAVIKNGRVVEQGS 1228
L+DE SALD +S ++E + ++ T V+V H + ++ SD A N VE GS
Sbjct: 177 LMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFF-NAEEVEGGS 235
|
Length = 269 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-28
Identities = 68/229 (29%), Positives = 126/229 (55%), Gaps = 24/229 (10%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKIRR 413
+ ++ + +++ + ++G SG GK+T + + R D VEG++ G I
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74
Query: 414 --LHLKWLRSQMGLVNQEPVLFATSITENILFG------KDGASMDDVI--SAAKAANAH 463
L + R ++G+V Q+P F SI +N+ FG K +D ++ S KAA
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAA--- 131
Query: 464 DFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQ 523
L D ++++ + G ++SGGQ+QR+ IARAL +P+++LLDE TSALD + + ++
Sbjct: 132 -----LWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIE 186
Query: 524 EAIDKVSKGRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELMNR 571
+ ++++S+ T +I+ H + IR A+ I + G+++E G E++ R
Sbjct: 187 KLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235
|
Length = 250 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-28
Identities = 84/282 (29%), Positives = 134/282 (47%), Gaps = 42/282 (14%)
Query: 963 EAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELK--NVFFAYPT 1020
MTSD S + S DP + G + IE + NVF+
Sbjct: 2 TNNEMTSDESSDGLITTTTATDTTDPSG-DPAASSGETV-------IEARDLNVFYG--- 50
Query: 1021 RPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL-----KGSVFMDEQDI 1075
D+ L +S+ I + A++G SGCGKST + + R D + +G + +++
Sbjct: 51 --DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNV 108
Query: 1076 RNYNLK--QLRSHIALVSQEPTLFAGTIRENIAYG--------KADARESEIKKAAVLAN 1125
+ ++ LR I +V Q+P F +I +N+AYG D R E + A L +
Sbjct: 109 YDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWD 168
Query: 1126 AHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL 1185
+KD D G+ LSGGQ+QR+ +ARAI +P ++L+DE SALD V+ S
Sbjct: 169 E------VKDQLD----SSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSK 218
Query: 1186 VQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAV-IKNGRVVE 1225
+++ +E++ T V+V H + + SD AV + G +VE
Sbjct: 219 IEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVE 260
|
Length = 285 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-28
Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 29/238 (12%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+E RD+ + YP T L+G+N + G+ V L+G +G+GKST P GEV
Sbjct: 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 405 LLDGYKIR--RLHLKWLRSQMGLVNQEP--VLFATSITENILFG--KDGASMDDVISAAK 458
L+ G I+ + L +R +G+V Q P LFA ++ E++ FG G S ++V K
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVK 119
Query: 459 AANAHDFITKLPDGYETQVGQLGFQ------MSGGQKQRIAIARALIRDPKILLLDEATS 512
A VG GF+ +SGGQK+R+AIA L P+I++LDE TS
Sbjct: 120 EALK-------------AVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTS 166
Query: 513 ALDAQ-SERIVQEAIDKVSKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNEL 568
LD + +I++ D +G T +I H + + A+ + V+ GK+++ G+ E+
Sbjct: 167 GLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-28
Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 28/230 (12%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+EL+NV + L L+L I G+ V L+G SGCGK+T + ++ +P G +
Sbjct: 1 VELENVTKRFGNVT---ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYG--KADARESEIKK-----A 1120
++ +D+ + K IA+V Q L+ T+ +NIA+G + EI + A
Sbjct: 58 YIGGRDVTDLPPKD--RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 1121 AVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS 1180
+L + + QLSGGQ+QR+AL RAI++ P + L+DE S LD+
Sbjct: 116 ELL------------QIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDA 163
Query: 1181 VSESLVQEALEKMMM--GRTCVVVAH-RLSTIQKSDTIAVIKNGRVVEQG 1227
++ L+++ G T + V H ++ + +D IAV+ +G++ + G
Sbjct: 164 KLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 3e-28
Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 47/211 (22%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ 422
+ G++ + G+++GLVG SG GKST L+ +P GE+L +G I +L
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS------- 81
Query: 423 MGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGF 482
E +L ++ V +F+ + P
Sbjct: 82 -----------KEERRERVL-----ELLEKVGLPE------EFLYRYP-----------H 108
Query: 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALD----AQSERIVQEAIDKVSKGRTTLII 538
++SGGQ+QRI IARAL +PK+++ DE SALD AQ ++++ +++ G T L I
Sbjct: 109 ELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL--GLTYLFI 166
Query: 539 AHRLSTIRT-ANLIMVLKAGKVVESGSHNEL 568
+H LS +R ++ I V+ GK+VE G E+
Sbjct: 167 SHDLSVVRYISDRIAVMYLGKIVEIGPTEEV 197
|
Length = 268 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 3e-28
Identities = 87/264 (32%), Positives = 136/264 (51%), Gaps = 52/264 (19%)
Query: 997 QGRDIKRQMRGRIELKNVFFAYPTRPDQMI--LKGLSLKIEAGKTVALVGQSGCGKSTII 1054
Q D+K+ +K F +P++++ L G+S +E GKT+A+VG+SGCGKST+
Sbjct: 7 QAIDLKK----HYPVKRGLF----KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLA 58
Query: 1055 GLLERFYDPLKGSVFMDEQDIRNYN---LKQLRSHIALVSQEPTLFA--------GTIRE 1103
LL P G ++ QD+ + K LR I +V Q P + G I E
Sbjct: 59 RLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNP--YGSLNPRKKVGQILE 116
Query: 1104 -----NIAYGKADARESEIKKAAVLANAHEFISGMK-DGYDTYCGERGVQLSGGQKQRIA 1157
N + A+ RE K A++A G++ + YD Y SGGQ+QRIA
Sbjct: 117 EPLLINTSLSAAERRE---KALAMMAKV-----GLRPEHYDRYPH----MFSGGQRQRIA 164
Query: 1158 LARAILKNPSILLLDEATSALDSVSESLVQ-EALEKMM-----MGRTCVVVAHRLSTIQK 1211
+ARA++ +P +++ DE SALD VS VQ + L MM +G + V ++H LS ++
Sbjct: 165 IARALMLDPDVVVADEPVSALD-VS---VQAQVLNLMMDLQQELGLSYVFISHDLSVVEH 220
Query: 1212 -SDTIAVIKNGRVVEQGSHNELVA 1234
+D + V+ GR VE+G+ ++
Sbjct: 221 IADEVMVMYLGRCVEKGTKEQIFN 244
|
Length = 327 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 3e-28
Identities = 69/199 (34%), Positives = 104/199 (52%), Gaps = 19/199 (9%)
Query: 1042 LVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-T 1100
L+G SGCGK+T++ LL F P GS+ +D +D+ N + HI +V Q LF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTN--VPPHLRHINMVFQSYALFPHMT 58
Query: 1101 IRENIAYG----KADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRI 1156
+ EN+A+G K E + + L + + + QLSGGQ+QR+
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQ---------LEEFADRKPHQLSGGQQQRV 109
Query: 1157 ALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLS-TIQKSD 1213
ALARA++ P ILLLDE SALD +Q L+ + +G T V V H + SD
Sbjct: 110 ALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSD 169
Query: 1214 TIAVIKNGRVVEQGSHNEL 1232
IA+++ G++ + G+ E+
Sbjct: 170 RIAIMRKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 3e-28
Identities = 84/240 (35%), Positives = 131/240 (54%), Gaps = 25/240 (10%)
Query: 1009 IELKNV--FFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTII---GLLERFYDP 1063
I+L N+ F T+ Q L +SL + AG+ ++G SG GKST+I LLER P
Sbjct: 2 IKLSNITKVFHQGTKTIQA-LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---P 57
Query: 1064 LKGSVFMDEQDI---RNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKK 1119
GSV +D QD+ N L + R I ++ Q L + T+ N+A K
Sbjct: 58 TSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP---K 114
Query: 1120 AAVLANAHEFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSA 1177
+ E ++ G+ D +D+Y LSGGQKQR+A+ARA+ NP +LL DEATSA
Sbjct: 115 DEIKRKVTELLALVGLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 1178 LDSVSESLVQEALEKM--MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
LD + + E L+++ +G T +++ H + +++ D +AVI NG ++EQG+ +E+ +
Sbjct: 171 LDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 4e-28
Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 31/234 (13%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERF 1060
M IE++N+ +Y RP +L+ +SL +E G+ AL+G +G GKST I+GLL+
Sbjct: 1 MMPMIEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-- 55
Query: 1061 YDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTL---FAGTIRE-----NIAYGKADA 1112
P G + + + +R ++ R I V Q+ ++ F T+++
Sbjct: 56 --PSSGEIKIFGKPVRK---RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110
Query: 1113 RESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLD 1172
R ++ K V A E + GM+D + +LSGGQKQR+ LARA+ +NP +LLLD
Sbjct: 111 RLNKKDKEKVDE-ALERV-GMED----LRDRQIGELSGGQKQRVLLARALAQNPDLLLLD 164
Query: 1173 EATSALDSVSESLVQEALEKM-MMGRTCVVVAHRLST-IQKSDTIAVIKNGRVV 1224
E + +D + + + L+++ G+T ++V H L + D + + N ++
Sbjct: 165 EPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLI 217
|
Length = 254 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 4e-28
Identities = 72/239 (30%), Positives = 124/239 (51%), Gaps = 17/239 (7%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-- 1062
M+ ++E KN+ Y ++ L ++L I K AL+G SGCGKST + L R D
Sbjct: 1 MKIKMESKNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLI 57
Query: 1063 ---PLKGSVFMDEQDI--RNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEI 1117
++G V +D ++I ++ ++ +LR + +V Q+P F +I +N+AYG R I
Sbjct: 58 SNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYG---PRIHGI 114
Query: 1118 KKAAVLANAHEFI---SGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEA 1174
K L E+ + + D + ++LSGGQ+QR+ +AR I P ++L+DE
Sbjct: 115 KDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEP 174
Query: 1175 TSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
TSALD +S +++ + ++ T V+V H + + SD A G ++E ++
Sbjct: 175 TSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233
|
Length = 251 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 5e-28
Identities = 79/255 (30%), Positives = 124/255 (48%), Gaps = 56/255 (21%)
Query: 345 IEFRDVYFCYPSRPDTL--------VLQGLNLRVPAGKSVGLVGGSGSGKSTT-IALLQR 395
+E D+ +P + L + G++L + G+++GLVG SGSGKST +ALL+
Sbjct: 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLR- 335
Query: 396 FYDPVEGEVLLDGYKIRRLH---LKWLRSQMGLVNQEP-------VLFATSITENILFGK 445
P +GE+ DG I L ++ LR +M +V Q+P + I E + +
Sbjct: 336 -LIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHE 394
Query: 446 DGASMDD----VISAAKAAN---------AHDFITKLPDGYETQVGQLGFQMSGGQKQRI 492
S + VI A + H+F SGGQ+QRI
Sbjct: 395 PKLSAAERDQRVIEALEEVGLDPATRNRYPHEF-------------------SGGQRQRI 435
Query: 493 AIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-AN 549
AIARALI P+++LLDE TSALD + V + + + + G + L I+H L+ +R +
Sbjct: 436 AIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCH 495
Query: 550 LIMVLKAGKVVESGS 564
++V++ GK+VE G
Sbjct: 496 RVIVMRDGKIVEQGP 510
|
Length = 534 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 5e-28
Identities = 73/241 (30%), Positives = 120/241 (49%), Gaps = 17/241 (7%)
Query: 345 IEFRDVYFCY-PSRP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402
I F +V + Y P + + +N GK +VG +GSGKST I + P G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 403 EVLLDGYKI----RRLHLKWLRSQMGLVNQ--EPVLFATSITENILFGKDGASMDDVISA 456
V +D I + +++ +R ++G+V Q E LF ++ I+FG M+ +
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMN--LDE 120
Query: 457 AKAANAHDFITKLPDGYETQVGQLG-FQMSGGQKQRIAIARALIRDPKILLLDEATSALD 515
K AH + L G+ V FQMSGGQ ++IAI L +P I++LDE T+ LD
Sbjct: 121 VKN-YAHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLD 177
Query: 516 AQSERIVQEAIDK--VSKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNRG 572
QS+R V + + +T ++++H ++ + R A+ ++V+K G +V S EL
Sbjct: 178 PQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDK 237
Query: 573 E 573
+
Sbjct: 238 K 238
|
Length = 286 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 5e-28
Identities = 72/234 (30%), Positives = 116/234 (49%), Gaps = 34/234 (14%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+EL+ + ++ + ++ L L I G+ + L+G SGCGK+T++ L+ F P G +
Sbjct: 15 VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADAR--ESEIKKAAVLAN 1125
+D QDI + + H+ V Q LF T+ EN+A+G + +EI + A
Sbjct: 72 MLDGQDITHVPAEN--RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEAL 129
Query: 1126 AHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL 1185
+ + QLSGGQ+QR+A+ARA++ P +LLLDE+ SALD
Sbjct: 130 RMVQLEEFAQ-------RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDY----- 177
Query: 1186 VQEALEKMM----------MGRTCVVVAH-RLSTIQKSDTIAVIKNGRVVEQGS 1228
L K M +G T V V H + + SD I V+++GR+ + G+
Sbjct: 178 ---KLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
|
Length = 375 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 6e-28
Identities = 70/226 (30%), Positives = 112/226 (49%), Gaps = 23/226 (10%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IE NV YP L G+++ I AG+ V LVG SG GKST++ L+ + P G++
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 1069 FMDEQDIRNYNLKQ---LRSHIALVSQEPTLFAG-TIRENIAYG----KADARESEIKKA 1120
++ QD+ + + LR I +V Q+ L + EN+A+ RE +
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 1121 AVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS 1180
A L + G+ + +LSGG++QR+A+ARAI+ +P+IL+ DE T LD
Sbjct: 119 AALE-----LVGLSHKHRAL----PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDP 169
Query: 1181 VSESLVQEALEKM-MMGRTCVVVAH--RLSTIQKSDTIAVIKNGRV 1223
+ + L+K+ G T VV H L + IA ++ G++
Sbjct: 170 DTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIA-LERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 8e-28
Identities = 61/236 (25%), Positives = 104/236 (44%), Gaps = 43/236 (18%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP-----VEGEVLLDGYKIRRLHL 416
+ G++ + G+ +G+VG SGSGKS + V GE+L DG + L
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 417 KWLR----SQMGLVNQEPVLFATS----------ITENILFGKDGASMDDVISAAKAA-- 460
K LR ++ ++ Q+P TS I E + G S + A
Sbjct: 80 KELRKIRGKEIAMIFQDP---MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLE 136
Query: 461 -----NAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD 515
+ + P ++SGG +QR+ IA AL +PK+L+ DE T+ALD
Sbjct: 137 LVGIPDPERRLKSYP-----------HELSGGMRQRVMIAMALALNPKLLIADEPTTALD 185
Query: 516 AQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNEL 568
+ + + + ++ + G ++I H L + A+ + V+ AG++VE G E+
Sbjct: 186 VTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI 241
|
Length = 316 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 8e-28
Identities = 78/224 (34%), Positives = 117/224 (52%), Gaps = 37/224 (16%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKST---IIGLLERFYDPLKGSVFMDEQDI------- 1075
LK +SL ++ G+ V L+G SGCGK+T II LER G+++ +DI
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQK 75
Query: 1076 RNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFIS--G 1132
R+Y +V Q LF T+ +NIAYG + + +A V E + G
Sbjct: 76 RDY---------GIVFQSYALFPNLTVADNIAYGLKNRG---MGRAEVAERVAELLDLVG 123
Query: 1133 MKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS-VSESLVQE--A 1189
+ Y G QLSGGQ+QR+ALARA+ +P +LLLDE SALD+ V E L E
Sbjct: 124 LPGSERKYPG----QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQ 179
Query: 1190 LEKMMMGRTCVVVAH-RLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
L++ +G T ++V H + + +D I V+ +G + + G+ E+
Sbjct: 180 LQR-RLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 8e-28
Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 22/234 (9%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IE++NV + L +SL I +G+ VAL+G SG GK+T++ L+ P G++
Sbjct: 3 IEVRNVSKRFGDFV---ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYG-KADARESEIKKAAVLANA 1126
+D + +++ ++ V Q LF T+ +N+A+G + R +A + A
Sbjct: 60 LFGGEDATDVPVQE--RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV 117
Query: 1127 HEFI-----SGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSV 1181
HE + + D Y QLSGGQ+QR+ALARA+ P +LLLDE ALD+
Sbjct: 118 HELLKLVQLDWLADRYPA-------QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 170
Query: 1182 SESLVQEALEKMM--MGRTCVVVAHRLS-TIQKSDTIAVIKNGRVVEQGSHNEL 1232
++ L ++ + T V V H ++ +D + V+ GR+ + G+ +E+
Sbjct: 171 VRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 8e-28
Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 21/244 (8%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
M IE+KN+ F Y ++ L +S ++ G+ ++++G +G GKST + L++ +
Sbjct: 1 MSNIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE 60
Query: 1065 KGSVFMDEQDIRNYNLKQLRSHIALVSQEP-TLFAG-TIRENIAYG---KADARESEIKK 1119
G + +D + N+ +R I +V Q P F G T+ +++A+G K E ++
Sbjct: 61 SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER 120
Query: 1120 AAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD 1179
+ A E + GM+D + +LSGGQKQR+A+A A+ P I++LDEATS LD
Sbjct: 121 ---VNEALELV-GMQDFKE----REPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLD 172
Query: 1180 SVSE----SLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235
++ + M T + + H L + SD + V+KNG+V + EL
Sbjct: 173 PEGRLELIKTIKGIRDDYQM--TVISITHDLDEVALSDRVLVMKNGQVESTSTPREL--F 228
Query: 1236 SRGG 1239
SRG
Sbjct: 229 SRGN 232
|
Length = 279 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 1e-27
Identities = 67/217 (30%), Positives = 111/217 (51%), Gaps = 18/217 (8%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL--HLKWL 419
+L G++L VP G+ V L+G +G+GK+T + + P G + DG I L H +
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHER-A 73
Query: 420 RSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVG 478
R+ +G V + +F ++ EN+L G A+ ++ +L + +
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKR--KARLERVYELFPRL----KERRK 127
Query: 479 QLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE---AIDKVSK-GRT 534
QL +SGG++Q +AIARAL+ PK+LLLDE + L + +IV+E AI ++ G T
Sbjct: 128 QLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIRELRDEGVT 184
Query: 535 TLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMN 570
L++ A+ VL+ G+VV G+ EL+
Sbjct: 185 ILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 66/212 (31%), Positives = 119/212 (56%), Gaps = 13/212 (6%)
Query: 1030 LSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL---KGSVFMDEQDIRNYNLKQLRSH 1086
++++IE K AL+G SGCGKST + R D + G V ++ +D++N ++ LR +
Sbjct: 21 INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80
Query: 1087 IALVSQEPTLFAGTIRENIAY-----GKADARESEIKKAAVLANAHEFISGMKDGYDTYC 1141
+ +V Q+P +F +I ENI+Y G ++ E A++ + + + G+ +
Sbjct: 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEE---EALVVDCLQKV-GLFEEVKDKL 136
Query: 1142 GERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVV 1201
+ + LSGGQ+QR+ +ARA+ P +LLLDE TSALD +S +++E L+++ + ++
Sbjct: 137 KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIM 196
Query: 1202 VAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
V H + ++ +D A G ++E G E
Sbjct: 197 VTHNMQQGKRVADYTAFFHLGELIEFGESKEF 228
|
Length = 246 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 1e-27
Identities = 70/219 (31%), Positives = 110/219 (50%), Gaps = 29/219 (13%)
Query: 366 LNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGL 425
+L VPAG+ V ++G SG+GKST + L+ F P GE+L++G + +
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDH--TASPPAERPVSM 75
Query: 426 VNQEPVLFA-TSITENILFGK------DGASMDDVISAAKAANAHDFITKLPDGYETQVG 478
+ QE LFA ++ +NI G + + V +AA F+ +LP
Sbjct: 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG------- 128
Query: 479 QLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-----KGR 533
++SGGQ+QR+A+AR L+R+ ILLLDE SALD + R E + VS +
Sbjct: 129 ----ELSGGQRQRVALARCLVREQPILLLDEPFSALD-PALR--AEMLALVSQLCDERKM 181
Query: 534 TTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELMNR 571
T L++ H R A+ ++ L G++ GS EL++
Sbjct: 182 TLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220
|
Length = 231 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-27
Identities = 76/262 (29%), Positives = 123/262 (46%), Gaps = 46/262 (17%)
Query: 345 IEFRDVYFCYPSRPDT---LVLQGL------------------NLRVPAGKSVGLVGGSG 383
IE ++VY + P L+ QG +L V G+ ++G SG
Sbjct: 5 IEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSG 64
Query: 384 SGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLR----SQMGLVNQEPVLFA-TSIT 438
SGKST + LL R +P GE+L+DG I +L LR ++ +V Q L ++
Sbjct: 65 SGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVL 124
Query: 439 ENILFGKDGASMDDVISAAKAANA------HDFITKLPDGYETQVGQLGFQMSGGQKQRI 492
EN+ FG + + +A A + K P+ ++SGG +QR+
Sbjct: 125 ENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN-----------ELSGGMQQRV 173
Query: 493 AIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLS-TIRTAN 549
+ARAL DP ILL+DEA SALD +Q+ + ++ +T + I H L +R +
Sbjct: 174 GLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGD 233
Query: 550 LIMVLKAGKVVESGSHNELMNR 571
I ++K G++V+ G+ E++
Sbjct: 234 RIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-27
Identities = 68/236 (28%), Positives = 109/236 (46%), Gaps = 29/236 (12%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
++ R++ Y + L+L V G+ GL+G +G+GK+TT+ +L P G
Sbjct: 1 LQIRNLTKTYKKGT-KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFAT-SITENILF-----GKDGASMDDVISAAK 458
++GY IR K R +G Q LF ++ E++ F G + + + +
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLL 118
Query: 459 AANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS 518
+ L D + L SGG K+++++A ALI P +LLLDE TS LD S
Sbjct: 119 R------VLGLTDKANKRARTL----SGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
Query: 519 ERIVQEAIDKVSKGRTTLIIAH------RLSTIRTANLIMVLKAGKVVESGSHNEL 568
R + + I +V KGR+ ++ H L R A ++ GK+ GS EL
Sbjct: 169 RRAIWDLILEVRKGRSIILTTHSMDEAEALCD-RIA----IMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-27
Identities = 77/240 (32%), Positives = 126/240 (52%), Gaps = 28/240 (11%)
Query: 1009 IELKNVFFAY-PTRP-DQMILKGLSLKIEAGKTVALVGQSGCGKSTII----GLLERFYD 1062
I+++N+ Y P ++ L ++++IE G+ V L+G +G GKST+I GLL+
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---- 58
Query: 1063 PLKGSVFMDEQDI--RNYNLKQLRSHIALVSQEP--TLFAGTIRENIAYGKAD--ARESE 1116
P G + +D DI + L +R + LV Q P LF TI ++IA+G + E E
Sbjct: 59 PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEE 118
Query: 1117 IKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATS 1176
I+ A I G+ Y+ Y + +LSGGQK+R+A+A + P IL+LDE T+
Sbjct: 119 IENRVKRAMN---IVGLD--YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTA 173
Query: 1177 ALDSVSE----SLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNE 1231
LD + ++E ++ M T ++V+H + + K +D I V+ G+ QG+ E
Sbjct: 174 GLDPKGRDEILNKIKELHKEYNM--TIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
Length = 287 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 2e-27
Identities = 62/220 (28%), Positives = 108/220 (49%), Gaps = 30/220 (13%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDIRN--YN 1079
L +++ I + AL+G SGCGKST++ R D + G + + ++I + +
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 1080 LKQLRSHIALVSQEPTLFAGTIRENIAYG--------KADAR---ESEIKKAAVLANAHE 1128
+ LR I +V Q P F +I EN+AYG K E +K AA+
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE--- 138
Query: 1129 FISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQE 1188
+KD + + LSGGQ+QR+ +AR + NP ++L+DE SALD ++ + +++
Sbjct: 139 ----VKDRLH----DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIED 190
Query: 1189 ALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227
+E + T ++V H + + SD + G+++E
Sbjct: 191 LIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFD 230
|
Length = 253 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 2e-27
Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 25/226 (11%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
L G+SL + G+ AL+G++G GKST++ +L Y P G + +D + + + + +
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83
Query: 1087 -IALVSQEPTLFAG-TIRENIAYGKADARES-EIKKAAVLANAHEFIS--GMKDGYDTYC 1141
IA V QE +L ++ ENI G+ R I + A+ A E ++ G+ DT
Sbjct: 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV 143
Query: 1142 GERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM-----G 1196
G+ LS Q+Q + +ARA+ + +L+LDE T+AL +V E+ E L ++ G
Sbjct: 144 GD----LSIAQRQMVEIARALSFDARVLILDEPTAAL-TVKET---ERLFDLIRRLKAQG 195
Query: 1197 RTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG------SHNELVAL 1235
+ ++HRL + + +D I V+++GRVV S +ELV L
Sbjct: 196 VAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRL 241
|
Length = 500 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 3e-27
Identities = 74/228 (32%), Positives = 131/228 (57%), Gaps = 3/228 (1%)
Query: 1025 MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLR 1084
++L+G+S +I + V +VG++G GKST++ R + G + ++ ++I Y L++LR
Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383
Query: 1085 SHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGER 1144
+++ Q+P LF GT+R+N+ +A +E+ A L E ++ +G D+ E
Sbjct: 1384 RQFSMIPQDPVLFDGTVRQNVD-PFLEASSAEVWAALELVGLRERVASESEGIDSRVLEG 1442
Query: 1145 GVQLSGGQKQRIALARAILKNPS-ILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVA 1203
G S GQ+Q + +ARA+LK S +L+DEAT+ +D + +Q + T + +A
Sbjct: 1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIA 1502
Query: 1204 HRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGGS 1251
HRL T+ + D I V+ +G V E GS ELV ++R ++S+++ G S
Sbjct: 1503 HRLHTVAQYDKIIVMDHGAVAEMGSPRELV-MNRQSIFHSMVEALGRS 1549
|
Length = 1560 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 72/217 (33%), Positives = 109/217 (50%), Gaps = 22/217 (10%)
Query: 1024 QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ- 1082
+L +SL IE G+TV L+G+SGCGKST+ LL P +G+V QD+ + KQ
Sbjct: 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQR 83
Query: 1083 --LRSHIALVSQE-PTLF--AGTIRENIA-----YGKADARESEIKKAAVLANAHEFISG 1132
R + LV Q+ P+ T+R+ I D E + + A +L
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLD-------- 135
Query: 1133 MKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEK 1192
M + QLSGGQ QRI +ARA+ P +++LDEA S LD V ++++ E L K
Sbjct: 136 MVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRK 195
Query: 1193 MMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQ 1226
+ G + + H L +Q +AV+ G++VE+
Sbjct: 196 LQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 5e-27
Identities = 62/255 (24%), Positives = 117/255 (45%), Gaps = 4/255 (1%)
Query: 34 PLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQT 93
V ++ + + ++ +L +L +A+GV + ER
Sbjct: 12 GATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLL--QGSFYLGERLG 69
Query: 94 SRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLST 153
R+R +++LRQ +G + +S ++ S ++ND + I+ + +K+ L+T
Sbjct: 70 QRIRKRLFRALLRQILGLPMSFFDTNSVG-ELTSRLTNDVSKIRDGLGDKLGLFFQSLAT 128
Query: 154 FFFCLLFSFILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVS 213
+ F W+L+L L + + I+ + K + + K ++Y AG +AE+++S
Sbjct: 129 VVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSVAEESLS 188
Query: 214 SIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSMGMI-YVGWAFQAWVGSY 272
IRTV ++ E L R+ AL+ + GIK+ GL G +I Y+ +A W G+Y
Sbjct: 189 GIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYALALWFGAY 248
Query: 273 LVTEKGEKGGSIFVA 287
LV G G++F
Sbjct: 249 LVISGGLSVGTVFAF 263
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 5e-27
Identities = 78/242 (32%), Positives = 122/242 (50%), Gaps = 38/242 (15%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP----- 399
+ RDV Y + L ++L +P +G SG GKST + L R D
Sbjct: 20 MRARDVSVFYG---EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR 76
Query: 400 VEGEVLLDGYKI--RRLHLKWLRSQMGLVNQEPVLFATSITENILFG-------KDGASM 450
V G++ LDG I RL + LR+++G+V Q+P F SI EN+ +G + A +
Sbjct: 77 VTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAEL 136
Query: 451 DDVI--SAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLD 508
D+++ S KA L + + ++ + G +SGGQ+QR+ IARA+ P+++L+D
Sbjct: 137 DEIVETSLRKAG--------LWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMD 188
Query: 509 EATSALDAQSERIVQEAIDKVSKGRTTLIIAH------RLSTIRTANLIMVLKAGKVVES 562
E SALD + V+E ID++ + T +I+ H R+S RTA G +VE
Sbjct: 189 EPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQ-RTA----FFHLGNLVEV 243
Query: 563 GS 564
G
Sbjct: 244 GD 245
|
Length = 267 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 5e-27
Identities = 68/230 (29%), Positives = 115/230 (50%), Gaps = 16/230 (6%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+E + F Y +R L ++ V G+ V L+G +G+GKST +LL R Y EG++
Sbjct: 2 LEVAGLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVL-FATSITENILFGKDGASMDDVISAAKAANAH 463
+ G+ +RR L ++G+V Q+P L S+ +N+ + A++ + A A
Sbjct: 59 SVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRYH---AALHGLSRAEARARIA 114
Query: 464 DFITK--LPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER- 520
+ + + L + + +V +L +GG ++R+ IARAL+ P +LLLDE T LD S
Sbjct: 115 ELLARLGLAERADDKVREL----NGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAA 170
Query: 521 IVQEAIDKVSK-GRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELM 569
I G + L H + I + ++VL G+V+ G+ EL
Sbjct: 171 ITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 5e-27
Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 16/223 (7%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
++L+N+ Y + L G+SL + G L+G +G GK+T++ +L P G++
Sbjct: 1 LQLENLTKRYG---KKRALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAH 1127
+D QD+ K LR I + QE ++ T+RE + Y A I V A
Sbjct: 57 RIDGQDVLKQPQK-LRRRIGYLPQEFGVYPNFTVREFLDYI---AWLKGIPSKEVKARVD 112
Query: 1128 EFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL 1185
E + + D G LSGG ++R+ +A+A++ +PSIL++DE T+ LD
Sbjct: 113 EVLELVNLGDRAKKKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIR 168
Query: 1186 VQEALEKMMMGRTCVVVAHRLSTIQKS-DTIAVIKNGRVVEQG 1227
+ L ++ R ++ H + ++ + +AV+ G++V +G
Sbjct: 169 FRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 6e-27
Identities = 72/210 (34%), Positives = 111/210 (52%), Gaps = 14/210 (6%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDIR--NYN 1079
LKG+ L + AL+G SGCGKST + L R D + G+V + Q+I N +
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 1080 LKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEF---ISGMKDG 1136
+ QLR + +V Q+P F +I EN+ YG R + +K AVL A E + + D
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYG---LRLAGVKDKAVLDEAVETSLKQAAIWDE 137
Query: 1137 YDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMG 1196
+ E + LSGGQ+QR+ +AR + P ++LLDE TSALD +S + ++ L ++
Sbjct: 138 VKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQ 197
Query: 1197 RTCVVVAHRLSTIQK-SDTIAVIKNGRVVE 1225
T ++V H + + SD A G ++E
Sbjct: 198 YTIILVTHSMHQASRISDKTAFFLTGNLIE 227
|
Length = 252 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 107 bits (271), Expect = 7e-27
Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 56/205 (27%)
Query: 358 PDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLK 417
L G++L V G+ L+G +G+GKST + +L Y P GE+L+DG
Sbjct: 11 GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG--------- 61
Query: 418 WLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQV 477
+ V FA S A A G V
Sbjct: 62 -----------KEVSFA--------------------SPRDARRA---------GIAM-V 80
Query: 478 GQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV-SKGRTTL 536
+Q+S G++Q + IARAL R+ ++L+LDE T+AL + + I ++ ++G +
Sbjct: 81 ----YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
Query: 537 IIAHRLSTI-RTANLIMVLKAGKVV 560
I+HRL + A+ + VL+ G+VV
Sbjct: 137 FISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 7e-27
Identities = 83/234 (35%), Positives = 123/234 (52%), Gaps = 37/234 (15%)
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTI---IGLLERFYDPLKGSVFMDEQDI---R 1076
Q +L G+ L+++ G+ VA++G SG GK+T+ I LLE+ P G++ + + I R
Sbjct: 15 GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTAR 71
Query: 1077 NYN-----LKQLRSHIALVSQEPTLFAG-TIRENIAYG----KADARESEIKKAAVLANA 1126
+ + ++QLR H+ V Q LF T+ ENI G K + +E +A L A
Sbjct: 72 SLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELL-A 130
Query: 1127 HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS--VSES 1184
++G + Y +LSGGQ+QR+A+ARA+ P ++L DE TSALD V E
Sbjct: 131 KVGLAGKETSYPR-------RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEV 183
Query: 1185 LV---QEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
L Q A EK RT V+V H +S + +D + GR+VEQG L A
Sbjct: 184 LNTIRQLAQEK----RTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233
|
Length = 250 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 8e-27
Identities = 70/218 (32%), Positives = 110/218 (50%), Gaps = 19/218 (8%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW 418
L +NL VP G V L+G SGSGKST + ++ P G + L+G R+H +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR- 70
Query: 419 LRSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDFI--TKLPDGYET 475
++G V Q LF ++ +NI FG + A+ + + L D Y
Sbjct: 71 -DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN 129
Query: 476 QVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS----ERIVQEAIDKVSK 531
Q +SGGQ+QR+A+ARAL +P++LLLDE ALDA+ +++ D+V
Sbjct: 130 Q-------LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV 182
Query: 532 GRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNEL 568
TT+ + H + A+ I+V+ GK+ + GS +E+
Sbjct: 183 --TTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 8e-27
Identities = 70/216 (32%), Positives = 115/216 (53%), Gaps = 14/216 (6%)
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS-----VFMDEQDI-- 1075
D L +SL+ E + AL+G SGCGKST + L R D + G+ + +D ++I
Sbjct: 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77
Query: 1076 RNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFI---SG 1132
+ ++ +LR + +V Q+P F +I EN+AYG R + +K A LA E +
Sbjct: 78 PHVDVVELRRRVGMVFQKPNPFPKSIFENVAYG---LRVNGVKDKAYLAERVERSLRHAA 134
Query: 1133 MKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEK 1192
+ D E + LSGGQ+QR+ +ARA+ P +LL+DE SALD ++ ++E + +
Sbjct: 135 LWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHE 194
Query: 1193 MMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227
+ T ++V H + + SD A G+++E G
Sbjct: 195 LKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 8e-27
Identities = 62/194 (31%), Positives = 100/194 (51%), Gaps = 19/194 (9%)
Query: 354 YPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKI-- 411
YP P+ VL+GLN G+ + L+G +G+GKST + L P G VL+DG +
Sbjct: 1 YPGGPE--VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 412 -RRLHLKWLRSQMGLVNQEP--VLFATSITENILFG--KDGASMDDVISAAKAANAHDFI 466
R+ L+ R ++GLV Q+P LFA + +++ FG G S +V + A +
Sbjct: 59 SRKGLLER-RQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREA-----L 112
Query: 467 TKLP-DGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEA 525
T + G + +SGG+K+R+AIA A+ P +LLLDE T+ LD +
Sbjct: 113 TAVGASGLRERPTH---CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAI 169
Query: 526 IDKVSKGRTTLIIA 539
+ ++ T++I+
Sbjct: 170 LRRLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 9e-27
Identities = 71/236 (30%), Positives = 116/236 (49%), Gaps = 27/236 (11%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
I +NV AYP + L+ +S I G+ V L G SG GKST++ L+ P +G +
Sbjct: 2 IRFENVSKAYPGGRE--ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 1069 FMDEQDIRNYNLKQ---LRSHIALVSQEPTLFAG-TIRENIAY-----GKADARESEIKK 1119
++ D+ ++ LR I +V Q+ L T+ EN+A GK EI++
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGK---PPREIRR 116
Query: 1120 --AAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSA 1177
+ VL + G+K QLSGG++QR+A+ARAI+ P++LL DE T
Sbjct: 117 RVSEVLD-----LVGLKHKARAL----PSQLSGGEQQRVAIARAIVNQPAVLLADEPTGN 167
Query: 1178 LD-SVSESLVQEALEKMMMGRTCVVVAHRLSTI-QKSDTIAVIKNGRVVEQGSHNE 1231
LD +S +++ E +G T ++ H L + + + +++GR+V S
Sbjct: 168 LDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 9e-27
Identities = 73/227 (32%), Positives = 117/227 (51%), Gaps = 27/227 (11%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IEF +V YP L ++L + G+ + L G SG+GK+T + LL P G+V
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 405 LLDGYKIRRLH---LKWLRSQMGLVNQE-PVLFATSITENILF-----GKDGASMDDVIS 455
+ G + RL L LR ++G+V Q+ +L ++ EN+ GK + +
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 456 AA-KAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSAL 514
AA + P+ Q+SGG++QR+AIARA++ P +LL DE T L
Sbjct: 120 AALRQVGLEHKADAFPE-----------QLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168
Query: 515 DAQ-SERIVQEAIDKVSKGRTTLIIA-HRLSTI-RTANLIMVLKAGK 558
D SERI+ + +++K TT+I+A H LS + R A+ +++L G+
Sbjct: 169 DPDLSERILD-LLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (275), Expect = 9e-27
Identities = 73/247 (29%), Positives = 127/247 (51%), Gaps = 23/247 (9%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-- 1062
M +I+++ V F Y +LK +++ + A++G SGCGKST++ L R D
Sbjct: 1 MDPKIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIV 57
Query: 1063 ---PLKGSVFMDEQDIRNYNLK--QLRSHIALVSQEPTLFAGTIRENIAYG------KAD 1111
L+G+V +D ++I + NL LR + +V Q+P F +I +N+A+G A
Sbjct: 58 SGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQ 117
Query: 1112 ARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLL 1171
+R E+ + ++ A + D + G+ LSGGQ+QR+ +AR + P ++L+
Sbjct: 118 SRLDEVVEKSLRQAA------LWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILM 171
Query: 1172 DEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHN 1230
DE SALD VS ++E ++++ T +V H + + SD + G +VE G
Sbjct: 172 DEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTG 231
Query: 1231 ELVALSR 1237
E+ + R
Sbjct: 232 EIFSRPR 238
|
Length = 251 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 71/223 (31%), Positives = 110/223 (49%), Gaps = 34/223 (15%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPLKGSVFMDEQDIRNYNLK 1081
IL G+SL + G+ VAL+G++G GK+T I+GLL P GS+ D +DI
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL----PPRSGSIRFDGRDITG---- 66
Query: 1082 QLRSH------IALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMK 1134
L H I V + +F T+ EN+ G R ++ K A L +E +K
Sbjct: 67 -LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRK--ARLERVYELFPRLK 123
Query: 1135 DGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM 1194
+ G LSGG++Q +A+ARA++ P +LLLDE + L + +V+E E +
Sbjct: 124 ERRKQLAG----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIR 176
Query: 1195 ----MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
G T ++V + +D V++ GRVV +G+ EL
Sbjct: 177 ELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 72/237 (30%), Positives = 114/237 (48%), Gaps = 30/237 (12%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+ L +V F+Y P + L + AG+ VA++G SG GKST++ L+ F P G +
Sbjct: 2 LALDDVRFSYGHLPMR-----FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYG-KADARESEIKKAAVLANA 1126
++ D ++++ QE LFA T+ +NI G + + ++ V A A
Sbjct: 57 LINGVDHTA--SPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAA 114
Query: 1127 HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
+ G + +LSGGQ+QR+ALAR +++ ILLLDE SALD +L
Sbjct: 115 AQV------GLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALD---PALR 165
Query: 1187 QEAL--------EKMMMGRTCVVVAHRLSTIQKS-DTIAVIKNGRVVEQGSHNELVA 1234
E L E+ T ++V H + D + + NGR+ QGS EL++
Sbjct: 166 AEMLALVSQLCDER---KMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219
|
Length = 231 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-26
Identities = 65/216 (30%), Positives = 106/216 (49%), Gaps = 17/216 (7%)
Query: 358 PDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLK 417
L G++L V G+ L+G +G+GKST + +L Y P GE+L+DG + +
Sbjct: 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPR 78
Query: 418 WLRSQ---MGLVNQEPVLFAT-SITENILFG----KDGASMDDVISAAKAANAHDFITKL 469
+ + V+QE L S+ ENI G + +D +A + L
Sbjct: 79 --DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL-GL 135
Query: 470 PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV 529
+T VG L S Q+Q + IARAL D ++L+LDE T+AL + + + I ++
Sbjct: 136 DIDPDTLVGDL----SIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRL 191
Query: 530 -SKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESG 563
++G + I+HRL + A+ I VL+ G+VV +
Sbjct: 192 KAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTR 227
|
Length = 500 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 1e-26
Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 23/225 (10%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL--HLKWL 419
L ++ V G+ GL+G +G+GK+T L+ F P G VL DG I L H
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH---E 71
Query: 420 RSQMGLV--NQEPVLFAT-SITENILFG-----KDGASMDDVISAAKAAN--AHDFI--T 467
+++G+ Q P LF ++ EN++ G + + A A + +
Sbjct: 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV 131
Query: 468 KLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAID 527
L D + G+L S GQ++R+ IARAL DPK+LLLDE + L+ + + E I
Sbjct: 132 GLADLADRPAGEL----SYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIR 187
Query: 528 KVS-KGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMN 570
++ +G T L++ H + + A+ + VL G+V+ G+ +E+ N
Sbjct: 188 ELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 112 bits (280), Expect = 2e-26
Identities = 73/233 (31%), Positives = 124/233 (53%), Gaps = 17/233 (7%)
Query: 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP--L 1064
G I + ++ AY +L LSL+IEAG+ +AL+G+SGCGK+T++ + F L
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 1065 KGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVL 1123
G + + ++D+ + + +AL+ Q LF + +N+A+G + + A +
Sbjct: 61 TGRIAIADRDLTH--APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118
Query: 1124 ANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS-VS 1182
A+A + + G+ D QLSGG +QRIA+ARAI P +LLLDE SALD+ +
Sbjct: 119 ADALKLV-GLGD----AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIR 173
Query: 1183 ESLVQE--ALEKMMMGRTCVVVAH-RLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
++ +E AL + + T + V H + + +D ++K+GR+ G L
Sbjct: 174 ANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 3e-26
Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 9/184 (4%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+ELK V + IL +SL + AG+ +A+ G SGCGKST++ ++ P G++
Sbjct: 4 LELKQVGYLAGDAK---ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHE 1128
+ +D+ + R ++ +Q P LF T+ +N+ + R +AA L
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIF-PWQIRNRRPDRAAALDLLAR 119
Query: 1129 FISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQE 1188
F D+ + +LSGG+KQRIAL R + P ILLLDE TSALD ++ ++E
Sbjct: 120 FALP-----DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEE 174
Query: 1189 ALEK 1192
+ +
Sbjct: 175 MIHR 178
|
Length = 223 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-26
Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 30/230 (13%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+ L V + Y P + L + G+ VA++G SG GKST++ L+ F +P GS+
Sbjct: 1 LALDKVRYEYEHLPME-----FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI 55
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYG-KADARESEIKKAAVLANA 1126
+++Q L + ++++ QE LFA T+R+NI G + + ++ V+ A
Sbjct: 56 KVNDQSH--TGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAA 113
Query: 1127 HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
+ G Y QLSGGQ+QR+ALAR +++ ILLLDE SALD L
Sbjct: 114 QQV------GIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALD---PLLR 164
Query: 1187 QEAL--------EKMMMGRTCVVVAHRLSTIQKS-DTIAVIKNGRVVEQG 1227
+E L E+ T ++V H LS + IAV+ G++
Sbjct: 165 EEMLALVKQLCSERQR---TLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 4e-26
Identities = 71/239 (29%), Positives = 121/239 (50%), Gaps = 25/239 (10%)
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV--- 400
E+E + YF D +L+ +NL +P L+G SG GKST I L R D +
Sbjct: 5 EVENLNTYF-----DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGF 59
Query: 401 --EGEVLLDGYKI--RRLHLKWLRSQMGLVNQEPVLFATSITENILFG------KDGASM 450
EG + LDG I + + LR ++G+V Q+P F SI +N+ +G D +
Sbjct: 60 RHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFI 119
Query: 451 DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEA 510
++ + + A A L D + ++ + +SGGQ+QR+ IAR + P+++L+DE
Sbjct: 120 EERVEESLKAAA------LWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173
Query: 511 TSALDAQSERIVQEAIDKVSKGRTTLIIAHRL-STIRTANLIMVLKAGKVVESGSHNEL 568
SALD S +++ I K+ + T +I+ H + R + G+++ESG +++
Sbjct: 174 CSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232
|
Length = 250 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 4e-26
Identities = 49/129 (37%), Positives = 68/129 (52%), Gaps = 13/129 (10%)
Query: 387 STTIALLQRFYDPVEGEVLLDGYKIRRL-HLKWLRSQMGLVNQEPVLFAT-SITENILFG 444
ST + L+ P G +LLDG L K LR ++G+V Q+P LF ++ EN+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 445 KDGASMDD-VISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPK 503
D A + DF+ + P +SGGQKQR+AIARAL++ PK
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREP----------VGTLSGGQKQRVAIARALLKKPK 110
Query: 504 ILLLDEATS 512
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 5e-26
Identities = 79/261 (30%), Positives = 130/261 (49%), Gaps = 33/261 (12%)
Query: 320 EMVDRTPAIDTDDKMGKAL-SYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGL 378
++ T A DT D G S IE RD+ Y D L +++ +P + +
Sbjct: 14 GLITTTTATDTTDPSGDPAASSGETVIEARDLNVFYG---DEQALDDVSMDIPENQVTAM 70
Query: 379 VGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKIRRLHLK--WLRSQMGLVNQEPV 431
+G SG GKST + + R D VEGE+ G + + LR ++G+V Q+P
Sbjct: 71 IGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN 130
Query: 432 LFATSITENILFG-----KDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSG 486
F SI +N+ +G DG + V + + A L D + Q+ G +SG
Sbjct: 131 PFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRA-------ALWDEVKDQLDSSGLDLSG 183
Query: 487 GQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAH------ 540
GQ+QR+ IARA+ DP+++L+DE SALD + +++ I+++++ T +I+ H
Sbjct: 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAA 243
Query: 541 RLSTIRTANLIMVLKAGKVVE 561
R+S +TA + L G++VE
Sbjct: 244 RISD-KTA---VFLTGGELVE 260
|
Length = 285 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 5e-26
Identities = 66/239 (27%), Positives = 121/239 (50%), Gaps = 21/239 (8%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IE +++ F Y + L ++ V G+ + ++G +GSGKSTT+ L+ + G++
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEP--VLFATSITENILFG--KDGASMDDVISAAKAA 460
++DG + ++ +R ++G+V Q P ++ +++ FG G +++ A
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 461 ----NAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDA 516
DF + P ++SGGQKQR+AIA A+ PKI++LDEATS LD
Sbjct: 125 LELVGMQDFKEREPA-----------RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 517 QSERIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGE 573
+ + + I + T + I H L + ++ ++V+K G+V + + EL +RG
Sbjct: 174 EGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGN 232
|
Length = 279 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 5e-26
Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 15/212 (7%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
L ++L++ G VAL+G SG GKST++ ++ P G + ++ QD + +
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--DRK 73
Query: 1087 IALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFI--SGMKDGYDTYCGE 1143
I V Q LF T+R+NIA+G + + K A + E + G+ D Y
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN---- 129
Query: 1144 RGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVV 1201
QLSGGQ+QR+ALARA+ P +LLLDE ALD+ ++ L K+ + T V
Sbjct: 130 ---QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF 186
Query: 1202 VAHRLS-TIQKSDTIAVIKNGRVVEQGSHNEL 1232
V H ++ +D I V+ NG++ + GS +E+
Sbjct: 187 VTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-26
Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 14/230 (6%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
I KNV F Y + LK +S I G+ ++VG +G GKSTI L+ G +
Sbjct: 8 IVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEP-TLFAGTI-RENIAYGKADARESEIKKAAVLANA 1126
F + Q I + N ++LR HI +V Q P F G+I + ++A+G + + ++ A
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126
Query: 1127 HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE--- 1183
+ + M + LSGGQKQR+A+A + NPS+++LDEATS LD +
Sbjct: 127 LKQV-DMLE----RADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL 181
Query: 1184 -SLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
LV++ + + T + + H LS ++D + V+ G V ++G+ E+
Sbjct: 182 LDLVRKVKSEHNI--TIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEI 229
|
Length = 269 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-26
Identities = 78/233 (33%), Positives = 118/233 (50%), Gaps = 25/233 (10%)
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV--- 400
+I+ RDV F Y D L+G+++ + V +G SG GKST + L R D +
Sbjct: 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59
Query: 401 --EGEVLLDGYKI--RRLHLKWLRSQMGLVNQEPVLFATSITENILFG------KDGASM 450
EGE+ +DG I + + + LR +G+V Q P F SI EN+ +G KD A +
Sbjct: 60 RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFI 119
Query: 451 DD-VISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDE 509
V K A L D + ++ + F +SGGQ+QR+ IARA+ P +LL+DE
Sbjct: 120 RQRVEETLKGA-------ALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDE 172
Query: 510 ATSALDAQSERIVQEAIDKVSKGRTTLIIAHRL-STIRTANLIMVLKAGKVVE 561
SALD S V+E I ++ K T +I+ H + R ++ G++VE
Sbjct: 173 PASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225
|
Length = 250 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 6e-26
Identities = 84/259 (32%), Positives = 133/259 (51%), Gaps = 36/259 (13%)
Query: 1005 MRGRIELKN---VFFAYPTRPDQMILKGLS------------------LKIEAGKTVALV 1043
M ++E+KN +F +P R + I +GLS L IE G+ ++
Sbjct: 1 MAIKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIM 60
Query: 1044 GQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS----HIALVSQEPTLFAG 1099
G SG GKST++ LL R +P +G V +D DI + +LR IA+V Q L
Sbjct: 61 GLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPH 120
Query: 1100 -TIRENIAYGKADARESEIKKAAVLANAHEFISGMKD-GYDTYCGERGVQLSGGQKQRIA 1157
T+ +N A+G E+ + + ++ G + Y +LSGG +QR+
Sbjct: 121 MTVLDNTAFGM------ELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVG 174
Query: 1158 LARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMG--RTCVVVAHRL-STIQKSDT 1214
LARA+ NP ILL+DEA SALD + + +Q+ L K+ RT V ++H L ++ D
Sbjct: 175 LARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDR 234
Query: 1215 IAVIKNGRVVEQGSHNELV 1233
IA+++NG VV+ G+ +E++
Sbjct: 235 IAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 107 bits (267), Expect = 6e-26
Identities = 71/222 (31%), Positives = 118/222 (53%), Gaps = 14/222 (6%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+++ N +F++ L ++++I G+ +VGQ GCGKS+++ + L+G V
Sbjct: 1 VQVTNGYFSWG--SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 1069 FMDEQDIRNYNLKQLRSH----IALVSQEPTLFAGTIRENIAYGKA--DARESEIKKAAV 1122
++ + + RS +A +Q+P L T+ ENI +G R + A
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACS 118
Query: 1123 LANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD-SV 1181
L I + G T GERG+ LSGGQ+QRI +ARA+ +N +I+ LD+ SALD +
Sbjct: 119 L---QPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHL 175
Query: 1182 SESLVQEALEKMMMG--RTCVVVAHRLSTIQKSDTIAVIKNG 1221
S+ L+QE + K + RT V+V H+L + +D I +K+G
Sbjct: 176 SDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 7e-26
Identities = 67/219 (30%), Positives = 114/219 (52%), Gaps = 13/219 (5%)
Query: 360 TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL 419
+ +L + G+ ++G SGSGKSTT+ +L R +P G++ +DG I + L
Sbjct: 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVEL 65
Query: 420 ----RSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYE 474
R ++G+V Q+ LF +I +N G + + KA + G E
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLV-----GLE 120
Query: 475 TQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--G 532
+ ++SGG +QR+ +ARAL +P ILL+DEA SALD +Q+ + K+
Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 533 RTTLIIAHRL-STIRTANLIMVLKAGKVVESGSHNELMN 570
+T + I H L IR + I+++KAG++V+ G+ +E++
Sbjct: 181 KTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 7e-26
Identities = 78/244 (31%), Positives = 126/244 (51%), Gaps = 25/244 (10%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
M +E++N+ F Y D L G+S I G+ V+++GQ+G GKST L++ ++
Sbjct: 1 MNKILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF 60
Query: 1065 KGSVFMDEQDIRNYNLKQLRSHIALVSQEP--TLFAGTIRENIAYGKADA---RESEIKK 1119
+G V +D + + N+ LR I +V Q P T+ +++A+G + RE IK+
Sbjct: 61 EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR 120
Query: 1120 A--AVLA-NAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATS 1176
A+LA N +F + +LSGGQKQR+A+A I P I++LDE+TS
Sbjct: 121 VDEALLAVNMLDFKT-----------REPARLSGGQKQRVAVAGIIALRPEIIILDESTS 169
Query: 1177 ALDSVSES----LVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
LD ++ E EK + T + + H L SD I V+K G ++++ + +EL
Sbjct: 170 MLDPTGRQEIMRVIHEIKEKYQL--TVLSITHDLDEAASSDRILVMKAGEIIKEAAPSEL 227
Query: 1233 VALS 1236
A S
Sbjct: 228 FATS 231
|
Length = 277 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 8e-26
Identities = 61/208 (29%), Positives = 98/208 (47%), Gaps = 43/208 (20%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLL--ERFYDPLKGSVFMDEQDIRNYNLKQL 1083
+LK +S K + G+ A++G SG GKST++ L R + G V ++ + + +
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD---KRSF 80
Query: 1084 RSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCG 1142
R I V Q+ L T+RE + + AA L
Sbjct: 81 RKIIGYVPQDDILHPTLTVRETLMF------------AAKL------------------- 109
Query: 1143 ERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVV 1201
RG LSGG+++R+++A ++ NPS+L LDE TS LDS S V L ++ GRT +
Sbjct: 110 -RG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIIC 166
Query: 1202 VAHRLST--IQKSDTIAVIKNGRVVEQG 1227
H+ S+ + D + ++ GRV+ G
Sbjct: 167 SIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 1e-25
Identities = 70/215 (32%), Positives = 116/215 (53%), Gaps = 16/215 (7%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL---HLKWL 419
L ++L VPAG+ G++G SG+GKST I + P G V++DG + L L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 420 RSQMGLVNQE-PVLFATSITENILF--GKDGASMDDVISAAKAANAHDFITKLPDGYETQ 476
R Q+G++ Q +L + ++ N+ D D++ A + D Y +
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSN 140
Query: 477 VGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRT 534
+SGGQKQR+AIARAL +PK+LL DEATSALD + + + E + ++++ G T
Sbjct: 141 -------LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLT 193
Query: 535 TLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNEL 568
L+I H + + R + + V+ G+++E G+ +E+
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI 228
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 70/222 (31%), Positives = 114/222 (51%), Gaps = 24/222 (10%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKI--RRLH 415
L +NL + K L+G SG GKST + L R D +EGEVLLDG I + +
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 416 LKWLRSQMGLVNQEPVLFATSITENILFG------KDGASMDDVISAA--KAANAHDFIT 467
+ LR ++G+V Q+P F SI +N+ +G KD +D ++ A KAA
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAA------- 132
Query: 468 KLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAID 527
L D + + + ++SGGQ+QR+ IAR + P ++L+DE TSALD S +++ +
Sbjct: 133 -LWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMV 191
Query: 528 KVSKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNEL 568
++ K T +I+ H + R ++ G ++E ++
Sbjct: 192 ELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233
|
Length = 251 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 24/229 (10%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKI-- 411
D L ++L + L+G SG GKST + L R D VEGE+LLDG I
Sbjct: 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77
Query: 412 RRLHLKWLRSQMGLVNQEPVLFATSITENILFG------KDGASMDDVI--SAAKAANAH 463
+ + LR ++G+V Q+P F SI EN+ +G KD A + + + S AA
Sbjct: 78 PHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAA--- 134
Query: 464 DFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQ 523
L D + ++ + +SGGQ+QR+ IARAL +P++LL+DE SALD + + ++
Sbjct: 135 -----LWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIE 189
Query: 524 EAIDKVSKGRTTLIIAHRL-STIRTANLIMVLKAGKVVESGSHNELMNR 571
E I ++ T +I+ H + R +++ GK++E G ++ R
Sbjct: 190 ELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238
|
Length = 253 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 77/251 (30%), Positives = 133/251 (52%), Gaps = 30/251 (11%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+E ++ F Y D L G++ + G+ V ++G +GSGKSTT L+ ++ EG+V
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEP--VLFATSITENILFGKD--GASMDDVI----SA 456
+DG + ++ LR ++G+V Q P ++ +++ FG + G +++I A
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 457 AKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD- 515
A N DF T+ P ++SGGQKQR+A+A + P+I++LDE+TS LD
Sbjct: 125 LLAVNMLDFKTREPA-----------RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173
Query: 516 -AQSE--RIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRG 572
+ E R++ E +K T L I H L +++ I+V+KAG++++ + +EL
Sbjct: 174 TGRQEIMRVIHEIKEKYQ--LTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231
Query: 573 EGGEYYQMVEL 583
E MVE+
Sbjct: 232 E-----DMVEI 237
|
Length = 277 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-25
Identities = 67/237 (28%), Positives = 119/237 (50%), Gaps = 20/237 (8%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
I ++++ F YP LK +S + G+ VA+VG +G GKST+ LL P G++
Sbjct: 6 IRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEP-TLFAG-TIRENIAYGKAD---ARESEIKKAAVL 1123
+ + + +R + +V Q P F G T+++++A+G + RE +++
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERV--- 121
Query: 1124 ANAHEFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSV 1181
+ + GM+D + +LSGGQKQR+A+A + P I++LDEATS LD
Sbjct: 122 ---DQALRQVGMED----FLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174
Query: 1182 SESLVQEALEKM--MMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALS 1236
V E + ++ G T + + H L ++D + V+ G ++E+G+ E+
Sbjct: 175 GRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231
|
Length = 279 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 1e-25
Identities = 71/217 (32%), Positives = 119/217 (54%), Gaps = 19/217 (8%)
Query: 1024 QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL 1083
Q + +SL I G+ AL+G SGCGKST++ +L F P G + +D D+ + +
Sbjct: 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSH--VPPY 89
Query: 1084 RSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFIS--GMKDGYDTY 1140
+ I ++ Q LF T+ +NIA+G ++ ++ KA + + +E + M++ +
Sbjct: 90 QRPINMMFQSYALFPHMTVEQNIAFG---LKQDKLPKAEIASRVNEMLGLVHMQE----F 142
Query: 1141 CGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ----EALEKMMMG 1196
+ QLSGGQ+QR+ALAR++ K P +LLLDE ALD +Q + LE+ +G
Sbjct: 143 AKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER--VG 200
Query: 1197 RTCVVVAH-RLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
TCV+V H + + + IA++ G+ V+ G E+
Sbjct: 201 VTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
Length = 377 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 71/235 (30%), Positives = 122/235 (51%), Gaps = 18/235 (7%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IEF++V T VL ++L + G+ V ++G SGSGKST + + + + G++
Sbjct: 2 IEFKNVS---KHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 405 LLDGYKIR--RLHLKWLRSQMGLVNQEPVLFA-TSITENILFGK---DGASMDDVISAAK 458
++DG K+ ++ + +R + G+V Q+ LF + EN++FG GAS
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGAS-----KEEA 113
Query: 459 AANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS 518
A + + K+ G + ++SGGQ+QR+AIARAL PK++L DE TSALD +
Sbjct: 114 EKQARELLAKV--GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPEL 171
Query: 519 ERIVQEAI-DKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNR 571
V + + D +G T +I+ H + A+ ++ + G++ E G L+
Sbjct: 172 RHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226
|
Length = 240 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 22/221 (9%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL-----KGSVFMDEQDI--RNYN 1079
LK ++L I + A++G SGCGKST I L R + + G + +Q+I ++Y+
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 1080 LKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHE-------FISG 1132
+++LR+++ +V Q+P F +I +N+ YG + IK L E
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYG---PKIHGIKDKKTLDEIVEKSLRGAAIWDE 156
Query: 1133 MKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEK 1192
+KD LSGGQ+QR+ +AR + P ++L+DE TSALD +S V+E +++
Sbjct: 157 LKDRLHD----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212
Query: 1193 MMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
+ + ++V H + + SD A NG V E +++
Sbjct: 213 LKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253
|
Length = 271 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (272), Expect = 1e-25
Identities = 75/233 (32%), Positives = 119/233 (51%), Gaps = 23/233 (9%)
Query: 1010 ELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVF 1069
E++N F Y R + +L L+L I+ K A +G SGCGKST + L + D ++G+
Sbjct: 82 EIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 1070 MDEQDIRNYNLK-------QLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAV 1122
E N + +LR+ I +V Q+PT F +I +N+AYG R + I +
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYG---PRNNGINDRKI 197
Query: 1123 LANAHE-------FISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEAT 1175
L E +KD D + G LSGGQ+QR+ +ARAI P +LL+DE T
Sbjct: 198 LEKIVEKSLKSAALWDEVKDDLD----KAGNALSGGQQQRLCIARAIALEPEVLLMDEPT 253
Query: 1176 SALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227
SALD ++ + ++E + ++ + ++V H ++ Q+ SD G + E G
Sbjct: 254 SALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306
|
Length = 329 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (267), Expect = 1e-25
Identities = 76/238 (31%), Positives = 126/238 (52%), Gaps = 23/238 (9%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----P 1063
IE +N+ Y D L +++KI AL+G SGCGKST + L R D
Sbjct: 8 IETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK 64
Query: 1064 LKGSVFMDEQDI--RNYNLKQLRSHIALVSQEPTLFAGTIRENIAYG------KADARES 1115
++G+V + ++I N+++ +LR I +V Q P F +I +NI+YG K +
Sbjct: 65 IEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLD 124
Query: 1116 EIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEAT 1175
EI + ++ +A + +KD +T + LSGGQ+QR+ +AR + P+++L+DE T
Sbjct: 125 EIVEQSLKKSA--LWNEVKDKLNT----NALSLSGGQQQRLCIARTLAIEPNVILMDEPT 178
Query: 1176 SALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
SALD +S ++E + + T ++V H + + SD A NG + E+ S +EL
Sbjct: 179 SALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236
|
Length = 254 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-25
Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 23/193 (11%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP-----VEGEVLLDGYKIRR--LH 415
++G++++ K L+G SGSGKST + L R D V G++L G I R ++
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 416 LKWLRSQMGLVNQEPVLFATSITENILFG------KDGASMDDVI--SAAKAANAHDFIT 467
+ +R +G+V Q P FA SI ENI F KD +D+++ S +AA
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAA------- 148
Query: 468 KLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAID 527
L D + + + +SGGQ+QR+ IARA+ P ILL+DE SALD S ++E +
Sbjct: 149 -LWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMF 207
Query: 528 KVSKGRTTLIIAH 540
++ K T +I+ H
Sbjct: 208 ELKKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-25
Identities = 72/239 (30%), Positives = 125/239 (52%), Gaps = 31/239 (12%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+E +++ ++YP LKG++ K E G+ VAL+G +G GKST+ P G V
Sbjct: 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 1069 FMDEQDIRNYNLKQL---RSHIALVSQEP--TLFAGTIRENIAYG------KADARESEI 1117
+ + I+ Y+ K L R + +V Q P LFA T+ E++A+G + E +
Sbjct: 60 LIKGEPIK-YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRV 118
Query: 1118 KKA--AVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEAT 1175
K+A AV GM +G++ LSGGQK+R+A+A + P I++LDE T
Sbjct: 119 KEALKAV---------GM-EGFENKPPH---HLSGGQKKRVAIAGILAMKPEIIVLDEPT 165
Query: 1176 SALDSVSESLVQEALEKM-MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
S LD + S + + L + G T ++ H + + +D + V+ +G+++++G+ E+
Sbjct: 166 SGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 71/211 (33%), Positives = 103/211 (48%), Gaps = 20/211 (9%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IE NV AYP L +SL I G+ + L G SG GK+T++ LL P +G V
Sbjct: 2 IEFHNVSKAYPGGVA--ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 1069 FMDEQDI---RNYNLKQLRSHIALVSQEPTLF-AGTIRENIAYG----KADARESEIKKA 1120
+ +D+ R L LR I +V Q+ L T+ EN+A RE + +
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 1121 AVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS 1180
A L + G++ D + QLSGG++QR+A+ARAI+ +P +LL DE T LD
Sbjct: 120 AAL----RQV-GLEHKADAFPE----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDP 170
Query: 1181 -VSESLVQEALEKMMMGRTCVVVAHRLSTIQ 1210
+SE ++ G T +V H LS +
Sbjct: 171 DLSERILDLLKRLNKRGTTVIVATHDLSLVD 201
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 74/238 (31%), Positives = 111/238 (46%), Gaps = 28/238 (11%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTI---IGLLERFYDPLK 1065
IE KNV + +L + L I+ G+ V ++G SG GKST+ I LE
Sbjct: 2 IEFKNVSKHFGPTQ---VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITS--- 55
Query: 1066 GSVFMDEQDIR--NYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAV 1122
G + +D + + + +R +V Q+ LF T EN+ +G R + K
Sbjct: 56 GDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGA--SKEEA 113
Query: 1123 LANAHEFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS 1180
A E ++ G+ + Y E LSGGQ+QR+A+ARA+ P ++L DE TSALD
Sbjct: 114 EKQARELLAKVGLAERAHHYPSE----LSGGQQQRVAIARALAVKPKLMLFDEPTSALDP 169
Query: 1181 VSESLVQEALEKMM----MGRTCVVVAHRLSTIQKSDT-IAVIKNGRVVEQGSHNELV 1233
L E L+ M G T V+V H + +K + + I GR+ E G L+
Sbjct: 170 ---ELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224
|
Length = 240 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 18/219 (8%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDI--RNYN 1079
L +SL + AL+G SG GKST++ + R D + GS+ + +I +
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 1080 LKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMK----- 1134
LR I +V Q+P F +I EN+ YG R IK VL A E +K
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYG---LRLKGIKDKQVLDEAVE--KSLKGASIW 135
Query: 1135 DGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM 1194
D + + LSGGQ+QR+ +AR + +P I+LLDE TSALD +S ++E L +
Sbjct: 136 DEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK 195
Query: 1195 MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
T ++V + + SD +G ++E ++
Sbjct: 196 DDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234
|
Length = 252 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 80/252 (31%), Positives = 126/252 (50%), Gaps = 44/252 (17%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----P 1063
I++ N+ F Y T Q IL+G+S++I K A++G SGCGKST + L R +
Sbjct: 8 IKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVR 64
Query: 1064 LKGSVFMDEQDI--RNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKA----------- 1110
++G V Q+I R NL +LR +++V +P LF ++ +N+AYG
Sbjct: 65 VEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEID 124
Query: 1111 DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILL 1170
D ES +K A + D + + LSGGQ+QR+ +ARA+ P +LL
Sbjct: 125 DIVESALKDADLW-----------DEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLL 173
Query: 1171 LDEATSALDSVS----ESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKN----- 1220
+DE LD ++ ESL+Q + + T V+V+H L + + SD A K
Sbjct: 174 MDEPCFGLDPIASMKVESLIQSLRLRSEL--TMVIVSHNLHQVSRLSDFTAFFKGNENRI 231
Query: 1221 GRVVEQGSHNEL 1232
G++VE G ++
Sbjct: 232 GQLVEFGLTKKI 243
|
Length = 261 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 34/234 (14%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPLKGSVFMDEQDIRNYNLK 1081
L+G+SL++E G+ VAL+G++G GK+T I+GL+ P G + D +DI
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR----PRSGRIIFDGEDIT----- 68
Query: 1082 QLRSH------IALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMK 1134
L H IA V + +F T+ EN+ G A AR + + L +E +K
Sbjct: 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLG-AYARRDKEAQERDLEEVYELFPRLK 127
Query: 1135 DGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQE---ALE 1191
+ + R LSGG++Q +A+ARA++ P +LLLDE + L + +V+E A++
Sbjct: 128 ERRNQ----RAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIK 180
Query: 1192 KM--MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVALSRGGAYY 1242
++ G T ++V + +D V++NGR+V G+ EL+A Y
Sbjct: 181 ELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVREAY 234
|
Length = 237 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 56/186 (30%), Positives = 101/186 (54%), Gaps = 16/186 (8%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
+ + ++ +Y +P + L+ +SL I +G+ V ++G SGCGK+T++ L+ F P +GS
Sbjct: 3 MLNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS 61
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANA 1126
+ ++ + I ++ +V Q L + +N+A+G + I+KA A
Sbjct: 62 IQLNGRRIEGPGAER-----GVVFQNEALLPWLNVIDNVAFG---LQLRGIEKAQRREIA 113
Query: 1127 HEFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSES 1184
H+ ++ G++ Y QLSGG +QR+ +ARA+ P +LLLDE ALD+++
Sbjct: 114 HQMLALVGLEGAEHKYI----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTRE 169
Query: 1185 LVQEAL 1190
+QE L
Sbjct: 170 QMQELL 175
|
Length = 259 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-25
Identities = 115/485 (23%), Positives = 215/485 (44%), Gaps = 81/485 (16%)
Query: 779 QEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWR--------- 829
+++ S + + T+AN ++ +++ + ++ + F IV +VL ++
Sbjct: 392 RKNFASGKVTNMITTDANALQ-----QIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFG 446
Query: 830 --LTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQ-------LASEAVINHRTI 880
+ ++I +Q L++ K RK KEG Q + +E + + T+
Sbjct: 447 SLILFLLIPLQTLIVR--------------KMRKLTKEGLQWTDKRVGIINEILASMDTV 492
Query: 881 TAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGL---FSSQFFNT-------ASTALAY 930
++ +K F+ ++G + E L SW+ L F+S N+ S +
Sbjct: 493 KCYAWEKS----FESRIQGIRNEEL--SWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFV 546
Query: 931 WYGGRLLTQELITPEHLFQAFLILLFT-AYVIAEAGSMTSDISKGSNAVRSVFAILDRRS 989
GG L T LF L ++++ + + + + S IL +
Sbjct: 547 LLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNP 606
Query: 990 EIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCG 1049
+ P +P I +KN +F++ ++ + L ++L+I G VA+VG +G G
Sbjct: 607 PLQPGAPA-----------ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEG 655
Query: 1050 KSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGK 1109
K+++I + + S + +R +A V Q +F T+RENI +G
Sbjct: 656 KTSLISAMLGELSHAETSSVV------------IRGSVAYVPQVSWIFNATVRENILFGS 703
Query: 1110 ADARESEIKKAAVLANAHEFISGMKDGYD-TYCGERGVQLSGGQKQRIALARAILKNPSI 1168
E + V A H+ + G D T GERGV +SGGQKQR+++ARA+ N I
Sbjct: 704 DFESERYWRAIDVTALQHDL--DLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDI 761
Query: 1169 LLLDEATSALDS-VSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQG 1227
+ D+ SALD+ V+ + ++ + G+T V+V ++L + D I ++ G + E+G
Sbjct: 762 YIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEG 821
Query: 1228 SHNEL 1232
+ EL
Sbjct: 822 TFAEL 826
|
Length = 1495 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 30/241 (12%)
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403
IE R+V + L ++L +P+G+ V L+G SGSGK+T + L+ P G
Sbjct: 2 SIEVRNVSKRFGDFV---ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58
Query: 404 VLLDGYKIRRLHLKWLRSQMGLVNQEPVLFA-TSITENILFG---KDGASMDDVISAAKA 459
+L G + ++ +G V Q LF ++ +N+ FG K + A
Sbjct: 59 ILFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPP--EAEIR 114
Query: 460 ANAHDFI-----TKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSAL 514
A H+ + L D Y Q +SGGQ+QR+A+ARAL +PK+LLLDE AL
Sbjct: 115 AKVHELLKLVQLDWLADRYPAQ-------LSGGQRQRVALARALAVEPKVLLLDEPFGAL 167
Query: 515 DAQS----ERIVQEAIDKVSKGRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELM 569
DA+ R ++ D++ TT+ + H + A+ ++V+ G++ + G+ +E+
Sbjct: 168 DAKVRKELRRWLRRLHDEL--HVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225
Query: 570 N 570
+
Sbjct: 226 D 226
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 3e-25
Identities = 73/220 (33%), Positives = 121/220 (55%), Gaps = 14/220 (6%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKI--RRLHLKWLR 420
L +N+ + G+ VGL+G +GSGKST I L P G++++DG I +++ L +R
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 421 SQMGLVNQEP--VLFATSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQ 476
++GLV Q P LF +I ++I FG G S +++ + K A I L YE
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMN---IVGLD--YEDY 137
Query: 477 VGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRT 534
+ F++SGGQK+R+AIA + +PKIL+LDE T+ LD + + I ++ K T
Sbjct: 138 KDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMT 197
Query: 535 TLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNRGE 573
++++H + + + A+ I+V+ GK G+ E+ E
Sbjct: 198 IILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVE 237
|
Length = 287 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-25
Identities = 67/244 (27%), Positives = 120/244 (49%), Gaps = 13/244 (5%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+E D+ Y S+ ++ ++ G+ GL+G +G+GK+T + ++ P G+V
Sbjct: 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAH 463
+DG R +R ++G++ E L+A + EN+ + + A+ A
Sbjct: 60 TIDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118
Query: 464 DFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQ 523
+ +L + + +VG+ S G KQ++AIARAL+ DP IL+LDE TS LD ++ R
Sbjct: 119 KRL-QLLEYLDRRVGEF----STGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173
Query: 524 EAIDKV-SKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNRG--EGGEYYQ 579
+ I ++ ++GR + +H + + + ++VL G+VV GS L R E
Sbjct: 174 DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIF 233
Query: 580 MVEL 583
L
Sbjct: 234 AFAL 237
|
Length = 245 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 18/223 (8%)
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERF---YDP---LKGSVFMDEQDIR 1076
D+ ILK +++KI ++G SG GKST++ +L R YD + G V +DI
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81
Query: 1077 NYNLKQLRSHIALVSQEPTLFAG-TIRENIAY-----GKADARESEIKKAAVLANAHEFI 1130
+ +LR + +V Q+P F +I +NIAY G + RE IKK ++ +
Sbjct: 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKRE--IKK--IVEECLRKV 137
Query: 1131 SGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEAL 1190
K+ YD QLSGGQ+QR+ +ARA+ P +LL+DE TS +D V+ +++ +
Sbjct: 138 GLWKEVYDRL-NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI 196
Query: 1191 EKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
++ V+V+H + + +D +A + NG +VE GS NE+
Sbjct: 197 TELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
|
Length = 257 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 4e-25
Identities = 81/247 (32%), Positives = 133/247 (53%), Gaps = 16/247 (6%)
Query: 343 GEIEFRDVYFCY----PSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD 398
G + F V Y P LVL+G++ R+ + VG+VG +GSGKST + R +
Sbjct: 1307 GSLVFEGVQMRYREGLP-----LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE 1361
Query: 399 PVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENI-LFGKDGASMDDVISAA 457
GE+ ++G +I L+ LR Q ++ Q+PVLF ++ +N+ F + AS +V +A
Sbjct: 1362 VCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLE--ASSAEVWAAL 1419
Query: 458 KAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALI-RDPKILLLDEATSALDA 516
+ + + +G +++V + G S GQ+Q + +ARAL+ + +L+DEAT+ +D
Sbjct: 1420 ELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDP 1479
Query: 517 QSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNEL-MNRGEGG 575
+R +Q + T + IAHRL T+ + I+V+ G V E GS EL MNR
Sbjct: 1480 ALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQS-- 1537
Query: 576 EYYQMVE 582
++ MVE
Sbjct: 1538 IFHSMVE 1544
|
Length = 1560 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-25
Identities = 77/242 (31%), Positives = 122/242 (50%), Gaps = 23/242 (9%)
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV--- 400
+I+ R V F Y VL+ +N+ P + ++G SG GKST + L R D V
Sbjct: 4 KIKIRGVNFFYHKHQ---VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 401 --EGEVLLDGYKIRRLHLKW--LRSQMGLVNQEPVLFATSITENILFG------KDGASM 450
EG VLLD I +L LR ++G+V Q+P F SI +N+ FG + +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRL 120
Query: 451 DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEA 510
D+V+ + A L D + + + G +SGGQ+QR+ IAR L +P+++L+DE
Sbjct: 121 DEVVEKSLRQAA------LWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEP 174
Query: 511 TSALDAQSERIVQEAIDKVSKGRTTLIIAHRL-STIRTANLIMVLKAGKVVESGSHNELM 569
SALD S ++E + ++ + T I+ H + R ++ L G +VE G E+
Sbjct: 175 CSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234
Query: 570 NR 571
+R
Sbjct: 235 SR 236
|
Length = 251 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 5e-25
Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 8/218 (3%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRF---YDP---VEGEVLLDGYKIR 412
D +L+ + +++P G++G SGSGKST + +L R YD V+G+VL G I
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81
Query: 413 RLHLKWLRSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDFITKLPD 471
++ LR ++G+V Q+P F SI +NI + + + K L
Sbjct: 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWK 141
Query: 472 GYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK 531
++ Q+SGGQ+QR+ IARAL PK+LL+DE TS +D + + +++ I ++
Sbjct: 142 EVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN 201
Query: 532 GRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNEL 568
+I++H + R A+ + L G++VE GS NE+
Sbjct: 202 EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
|
Length = 257 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 5e-25
Identities = 74/231 (32%), Positives = 120/231 (51%), Gaps = 36/231 (15%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTI---IGLLERFYDPLKGSVFMDEQDIR------ 1076
+LKG+SL+ AG ++++G SG GKST I LE+ P GS+ ++ ++IR
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSAGSIRVNGEEIRLKRDKD 77
Query: 1077 -------NYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHE 1128
L++LR+ + +V Q L++ T+ EN+ +A + KA + A +
Sbjct: 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVI--EAPVHVLGVSKAEAIERAEK 135
Query: 1129 FIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
+++ G+ + D Y LSGGQ+QR+A+ARA+ P ++L DE TSALD LV
Sbjct: 136 YLAKVGIAEKADAY----PAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDP---ELV 188
Query: 1187 QEALEKMMM----GRTCVVVAHRLS-TIQKSDTIAVIKNGRVVEQGSHNEL 1232
E L+ M GRT VVV H + S + + G++ E+G ++
Sbjct: 189 GEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV 239
|
Length = 256 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (262), Expect = 6e-25
Identities = 70/233 (30%), Positives = 121/233 (51%), Gaps = 12/233 (5%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLK-- 1065
+I+++N+ Y ++ LK +S++I AL+G SGCGKST I L R D +K
Sbjct: 12 QIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68
Query: 1066 ---GSVFMDEQDI--RNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKA 1120
G V ++ +DI + ++ +LR ++ +V Q+P F +I +N+AYG ++
Sbjct: 69 RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLD 128
Query: 1121 AVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS 1180
V+ NA + + D + LSGGQ+QR+ +AR + P I+L DE TSALD
Sbjct: 129 GVVENALRSAALWDETSDRL-KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP 187
Query: 1181 VSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
+S + +++ + + T V+V H + + SD G ++E G ++
Sbjct: 188 ISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240
|
Length = 258 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 7e-25
Identities = 67/228 (29%), Positives = 110/228 (48%), Gaps = 28/228 (12%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL-----KGSVFMDEQDIRNYNLK 1081
+K + L I + A +G SGCGKSTI+ R D + +G V +++ ++
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 1082 --QLRSHIALVSQEPTLFAGTIRENIAYG------KADARE---SEIKKAAVLANAHEFI 1130
++R I +V Q+P F +I +NIAYG K D E +++AA+
Sbjct: 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDE----- 140
Query: 1131 SGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEAL 1190
+KD + G+ LSGGQ+QR+ +ARAI P ++L+DE SALD +S ++E +
Sbjct: 141 --VKDKLK----QSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELM 194
Query: 1191 EKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHN-ELVALSR 1237
++ T ++V H + + + N + E G LV R
Sbjct: 195 HELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDR 242
|
Length = 264 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 8e-25
Identities = 68/225 (30%), Positives = 109/225 (48%), Gaps = 28/225 (12%)
Query: 358 PDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTT---IALLQRFYDPVEGEVLLDGYKIRRL 414
L ++L + +G+ V L+G SG+GKST IA L+ P G + L+G +
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVL--F 67
Query: 415 HLKWLRSQ---MGLVNQEPVLFA-TSITENILFG-KDGASMDDVISAAKAANAHDFITKL 469
+ L + +G V Q LF ++ +NI FG K A A + +
Sbjct: 68 DVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPS--EAEIRARVEELLR-- 123
Query: 470 PDGYETQVGQLG----FQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEA 525
Q+ L Q+SGGQ+QR+A+ARAL +PK+LLLDE ALDA+ + ++
Sbjct: 124 ----LVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW 179
Query: 526 IDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNE 567
+ K+ G TT+ + H A+ ++VL G++ + G +E
Sbjct: 180 LRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224
|
Length = 345 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 8e-25
Identities = 67/213 (31%), Positives = 111/213 (52%), Gaps = 15/213 (7%)
Query: 366 LNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV---EGEVLLDGYKIRRLHLKWLRSQ 422
+N+++ K L+G SG GKST + R D + +G V ++G ++ + LR
Sbjct: 21 INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80
Query: 423 MGLVNQEPVLFATSITENILFGKDGASM----DDVISAAKAANAHDFITK--LPDGYETQ 476
+G+V Q+P +F SI ENI + M D+ + A D + K L + + +
Sbjct: 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDE-----EEALVVDCLQKVGLFEEVKDK 135
Query: 477 VGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTL 536
+ Q +SGGQ+QR+ IARAL PK+LLLDE TSALD S +++E + ++S + +
Sbjct: 136 LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMI 195
Query: 537 IIAHRLST-IRTANLIMVLKAGKVVESGSHNEL 568
++ H + R A+ G+++E G E
Sbjct: 196 MVTHNMQQGKRVADYTAFFHLGELIEFGESKEF 228
|
Length = 246 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 8e-25
Identities = 67/216 (31%), Positives = 107/216 (49%), Gaps = 21/216 (9%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS 1085
+L +SL + G+ VA++G +G GKST++ L P G V ++ + + +++ +L
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELAR 76
Query: 1086 HIALVSQEPTL-FAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGER 1144
A++ Q +L F T+ E +A G+A S + A++A A + G
Sbjct: 77 RRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALA-----QVDLAHLAGRD 131
Query: 1145 GVQLSGGQKQRIALARAIL------KNPSILLLDEATSALD-----SVSESLVQEALEKM 1193
QLSGG++QR+ LAR + P LLLDE TSALD V Q A E+
Sbjct: 132 YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER- 190
Query: 1194 MMGRTCVVVAHRLS-TIQKSDTIAVIKNGRVVEQGS 1228
G +VV H L+ + +D I ++ GR+V G+
Sbjct: 191 --GLAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 9e-25
Identities = 74/239 (30%), Positives = 116/239 (48%), Gaps = 22/239 (9%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
I + F YP T L+ ++ V G+ V +VG +GSGKST LL P G +
Sbjct: 6 IRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEP--VLFATSITENILFG--KDGASMDDVI----SA 456
+ G + + +R Q+G+V Q P ++ +++ FG G ++++ A
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124
Query: 457 AKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDA 516
+ DF+ + P ++SGGQKQR+AIA L P I++LDEATS LD
Sbjct: 125 LRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 517 QSERIVQEAID--KVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGE 573
+ R V E + K KG T L I H L A+ ++V+ G+++E G+ E+ G
Sbjct: 174 RGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGH 232
|
Length = 279 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-24
Identities = 89/306 (29%), Positives = 149/306 (48%), Gaps = 29/306 (9%)
Query: 299 LGALPNL-TAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRG-EIEFRDVYFCYPS 356
L LP + ++I +A V+ R+ + ++ D + + G I + F + +
Sbjct: 590 LNILPMVISSIVQASVSLKRLRIFLSHE-ELEPDSIERRTIKPGEGNSITVHNATFTW-A 647
Query: 357 RPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHL 416
R L G+ +P G V +VG G GKS+ ++ L D VEG V + G
Sbjct: 648 RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------- 699
Query: 417 KWLRSQMGLVNQEPVLFATSITENILFGK--DGASMDDVISAAKAANAHDFITKLPDGYE 474
+ V Q+ + S+ ENILFGK + V+ A A D + LP G
Sbjct: 700 -----SVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEAC--ALLPD-LEILPSGDR 751
Query: 475 TQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAI---DKVSK 531
T++G+ G +SGGQKQR+++ARA+ + I L D+ SA+DA + + E + + V K
Sbjct: 752 TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLK 811
Query: 532 GRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNR-GEGGEY---YQMVELQQMA 587
+T +++ H +S + ++I+V+ GK+ E GS+ EL+ R G E+ Y E Q
Sbjct: 812 NKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHL 871
Query: 588 SENDTS 593
++ T+
Sbjct: 872 EDSWTA 877
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 64/216 (29%), Positives = 108/216 (50%), Gaps = 15/216 (6%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRS 421
L+ ++L V G ++G +GSGKS + + F P G++LL+G I +L +
Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKR 71
Query: 422 QMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDF--ITKLPDGYETQVG 478
+ V Q LF ++ +NI +G +D K + I L +
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-- 129
Query: 479 QLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTL 536
+SGG++QR+AIARAL+ +PKILLLDE SALD +++ ++E + K+ K G T L
Sbjct: 130 -----LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVL 184
Query: 537 IIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571
+ H A+ + ++ GK+++ G E+ +
Sbjct: 185 HVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-24
Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 13/191 (6%)
Query: 1018 YPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMD--EQDI 1075
YP P+ +LKGL+ E G+ +AL+G +G GKST++ L P G+V +D D
Sbjct: 1 YPGGPE--VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 1076 RNYNLKQLRSHIALVSQEP--TLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGM 1133
L + R + LV Q+P LFA + +++A+G + SE + + A +
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA- 117
Query: 1134 KDGYDTYCGERGVQ-LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEK 1192
G ER LSGG+K+R+A+A A+ P +LLLDE T+ LD + L +
Sbjct: 118 -SGLR----ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRR 172
Query: 1193 MMMGRTCVVVA 1203
+ VV++
Sbjct: 173 LRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 1e-24
Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 1051 STIIGLLERFYDPLKGSVFMDEQDIRNYN-LKQLRSHIALVSQEPTLFAG-TIRENIAYG 1108
ST++ L+ P G++ +D +D + K LR I +V Q+P LF T+REN+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1109 -KADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPS 1167
+ ++ ++A +F+ E LSGGQKQR+A+ARA+LK P
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110
Query: 1168 ILLLDEATS 1176
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 18/238 (7%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
I F++V F Y S + L+ ++ +P G+ +VG +GSGKST L+ GE+
Sbjct: 8 IVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPV-LFATSITE-NILFGKDGASM--DDVISAAKAA 460
+ I + + LR +G+V Q P F SI + ++ FG + ++ D++ A
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126
Query: 461 NAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE- 519
+ + D YE +SGGQKQR+AIA L +P +++LDEATS LD +
Sbjct: 127 LKQVDMLERAD-YEPN------ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQ 179
Query: 520 ---RIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEG 574
+V++ K T + I H LS A+ ++V+ G V + G+ E+ + E
Sbjct: 180 NLLDLVRKV--KSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEE 235
|
Length = 269 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 73/230 (31%), Positives = 122/230 (53%), Gaps = 14/230 (6%)
Query: 1009 IELKNVFFAYP--TRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
I L+NV + Y T + L ++L IE G A +G +G GKSTI+ LL + P +G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1067 SVFMDEQDIR----NYNLKQLRSHIALVSQ--EPTLFAGTIRENIAYGKADARESEIKKA 1120
SV +D+ I N ++KQ+R + LV Q E LF T+ +++A+G + S+ ++A
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQ-EEA 121
Query: 1121 AVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS 1180
LA + G+ ++ + +LSGGQ +R+A+A + P IL+LDE T+ LD
Sbjct: 122 EALAREKLALVGIS---ESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178
Query: 1181 VSESLVQEALEKM-MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGS 1228
+ +K+ G T V+V H + + +D + V++ G++V G
Sbjct: 179 KGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
Length = 280 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 68/235 (28%), Positives = 125/235 (53%), Gaps = 18/235 (7%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
++++ + + Y LKG+++ I+ G+ A++G +G GKST+ L P G +
Sbjct: 6 LKVEELNYNYSDGTHA--LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 1069 FMDEQ--DIRNYNLKQLRSHIALVSQEP--TLFAGTIRENIAYGKADAR--ESEIKKAAV 1122
D + D L +LR + +V Q+P LF+ ++ +++++G + + E E++K
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 1123 LANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVS 1182
A I +KD T+C LS GQK+R+A+A ++ P +L+LDE T+ LD +
Sbjct: 124 NALKRTGIEHLKDK-PTHC------LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176
Query: 1183 ESLVQEALEKMM--MGRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVA 1234
S + + L +M +G T ++ H + + D + V+K GRV+ QG+ E+ A
Sbjct: 177 VSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231
|
Length = 283 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-24
Identities = 71/260 (27%), Positives = 123/260 (47%), Gaps = 66/260 (25%)
Query: 1009 IELKNVFFAYPTRPDQM--------ILKGLSLKIEAGKTVALVGQSGCGKST----IIGL 1056
+E++++ +P + + + G+SL + G+T+ LVG+SG GKST ++ L
Sbjct: 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336
Query: 1057 LERFYDPLKGSVFMDEQDIRNYNLKQ---LRSHIALVSQEPTLFAG-----TIRENIAYG 1108
+ P +G + D QDI + K+ LR + +V Q+P + T+ + I G
Sbjct: 337 I-----PSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP--YGSLSPRMTVGQIIEEG 389
Query: 1109 ------KADARESEIKKAAVLANA-----------HEFISGMKDGYDTYCGERGVQLSGG 1151
K A E + + L HEF SGG
Sbjct: 390 LRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEF-------------------SGG 430
Query: 1152 QKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTI 1209
Q+QRIA+ARA++ P ++LLDE TSALD ++ V + L + G + + ++H L+ +
Sbjct: 431 QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVV 490
Query: 1210 QK-SDTIAVIKNGRVVEQGS 1228
+ + V+++G++VEQG
Sbjct: 491 RALCHRVIVMRDGKIVEQGP 510
|
Length = 534 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 64/238 (26%), Positives = 114/238 (47%), Gaps = 29/238 (12%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+E+ ++ +Y ++ +S + E G+ L+G++G GK+T++ ++ P G V
Sbjct: 2 LEVTDLTKSYG--SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAY---------GKADARESEIK 1118
+D D +R I ++ E L+A T REN+ Y + AR +E+
Sbjct: 60 TIDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118
Query: 1119 KAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSAL 1178
K + + D GE S G KQ++A+ARA++ +PSIL+LDE TS L
Sbjct: 119 KRL----------QLLEYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGL 164
Query: 1179 DSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
D + + ++++ GR + +H + ++ D + V+ G VV +GS L A
Sbjct: 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 32/229 (13%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIR--------- 412
VL+G++L+ AG + ++G SGSGKST + + P G + ++G +IR
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 413 ----RLHLKWLRSQMGLVNQEPVLFA-TSITENILFGKD---GASMDDVISAAKAANAHD 464
+ L+ LR+++G+V Q L++ ++ EN++ G S + I A
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAI-----ERAEK 135
Query: 465 FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE 524
++ K+ G + +SGGQ+QR+AIARAL +P+++L DE TSALD + +V E
Sbjct: 136 YLAKV--GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE---LVGE 190
Query: 525 AI----DKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNEL 568
+ D +GRT +++ H + R ++ ++ L GK+ E G ++
Sbjct: 191 VLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV 239
|
Length = 256 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 30/230 (13%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL--HLKWL 419
+ ++L V G+ VGL+G +G+GK+T L+ FY P G V+ G I L H
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH---R 75
Query: 420 RSQMGLVN--QEPVLFAT-SITENIL------------FGKDGASMDDVISAAKAANAHD 464
+++G+ Q LF ++ EN+ G+ A ++ + +A +
Sbjct: 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLE 135
Query: 465 FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ-SERIVQ 523
F+ L + + G L S GQ++R+ IARAL PK+LLLDE + L+ + +E +
Sbjct: 136 FV-GLGELADRPAGNL----SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA- 189
Query: 524 EAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMN 570
E I ++ G T L+I H + + A+ I+VL G+V+ G+ E+ N
Sbjct: 190 ELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 67/203 (33%), Positives = 108/203 (53%), Gaps = 20/203 (9%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
LKG++L I+ G+ ++L+G SGCGKST++ L+ P G V ++ + I ++
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM--- 57
Query: 1087 IALVSQEPTLFAG-TIRENIAYG----KADARESEIKKAAVLANAHEFISGMKDGYDTYC 1141
+V Q +L T+RENIA D +SE + + H + G+ + D
Sbjct: 58 --VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRA---IVEEHIALVGLTEAADKRP 112
Query: 1142 GERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTC 1199
G QLSGG KQR+A+ARA+ P +LLLDE ALD+++ +QE L ++ T
Sbjct: 113 G----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTV 168
Query: 1200 VVVAHRL-STIQKSDTIAVIKNG 1221
++V H + + SD + ++ NG
Sbjct: 169 LMVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 66/215 (30%), Positives = 112/215 (52%), Gaps = 16/215 (7%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFM-------DEQDI--RN 1077
LK +++ + + AL+G SGCGKST + R +D G+ + D +I
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 1078 YNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFI---SGMK 1134
+ ++R I++V Q+P F +I EN+AYG R +K+ ++L E + +
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYG---LRIRGVKRRSILEERVENALRNAALW 148
Query: 1135 DGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM 1194
D G+ LSGGQ+QR+ +ARA+ +P ILL DE TSALD ++ + ++E + +
Sbjct: 149 DEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK 208
Query: 1195 MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGS 1228
T ++V H + + SD A + G ++E G+
Sbjct: 209 NKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243
|
Length = 265 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 61/224 (27%), Positives = 115/224 (51%), Gaps = 25/224 (11%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKI--RRL 414
+L +NL + + +G SG GKST + R D V+GE+ +DG +
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 415 HLKWLRSQMGLVNQEPVLFATSITENILFG-------KDGASMDDVI--SAAKAANAHDF 465
++ LR+++G+V Q+P F SI +N+ +G K+ +D+++ S +
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL 139
Query: 466 ITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEA 525
+L D F++SGGQ+QR+ IARA+ P +LL+DE SALD + +++
Sbjct: 140 GDRLKDS--------AFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENL 191
Query: 526 IDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNEL 568
I ++ K T +++ H + + ++ + ++G++VE + E+
Sbjct: 192 IQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235
|
Length = 251 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 4e-24
Identities = 61/229 (26%), Positives = 108/229 (47%), Gaps = 46/229 (20%)
Query: 344 EIEFRDVYFCYPSRPDT---LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALL--QRFYD 398
+ FR++ S P +L+ ++ + G+ ++G SG+GKST + L +R
Sbjct: 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL 62
Query: 399 PVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAA 457
V GEVL++G L + R +G V Q+ +L T ++ E ++F AA
Sbjct: 63 GVSGEVLINGRP---LDKRSFRKIIGYVPQDDILHPTLTVRETLMF------------AA 107
Query: 458 KAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ 517
K + L SGG+++R++IA L+ +P +L LDE TS LD+
Sbjct: 108 K-------LRGL---------------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145
Query: 518 SERIVQEAIDKVSK-GRTTLIIAHRLST--IRTANLIMVLKAGKVVESG 563
S V + +++ GRT + H+ S+ + +++L G+V+ G
Sbjct: 146 SALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 5e-24
Identities = 63/211 (29%), Positives = 111/211 (52%), Gaps = 20/211 (9%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN---LKQ 1082
+LKG+SL I G+ VA+VG SG GKST++ LL +P G V + Q + + +
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 1083 LRS-HIALVSQEPTLFAG-TIRENIAY----GKADARESEIKKAAVLANAHEFISGMKDG 1136
LR+ + + Q L T EN+A GK +E++ + +L G++
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKV-----GLEHR 134
Query: 1137 YDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKM--M 1194
+ E LSGG++QR+A+ARA++ PS++L DE T LD+ + ++ + + ++
Sbjct: 135 INHRPSE----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE 190
Query: 1195 MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVE 1225
+ + +VV H L +K D + +K+G++
Sbjct: 191 LNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-24
Identities = 63/212 (29%), Positives = 114/212 (53%), Gaps = 16/212 (7%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL---H 415
DT VL+G++L + G+ V +VG SGSGKST + LL +P GEVL +G + +L
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 416 LKWLRSQ-MGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAHDFITKLPD-- 471
LR++ +G + Q L + EN+ +M +I A + ++ +
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENV-------AMPLLIGKKSVKEAKERAYEMLEKV 129
Query: 472 GYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK 531
G E ++ ++SGG++QR+AIARAL+ P ++L DE T LD + +I+ + + ++++
Sbjct: 130 GLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189
Query: 532 GRTT--LIIAHRLSTIRTANLIMVLKAGKVVE 561
T L++ H L + + ++ +K G++
Sbjct: 190 ELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 5e-24
Identities = 76/241 (31%), Positives = 124/241 (51%), Gaps = 24/241 (9%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD---PLK 1065
I++K++ F Y T ++G+S+ I K A++G SGCGKST I L R + P+K
Sbjct: 8 IKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 1066 --GSVFMDEQDIRN--YNLKQLRSHIALVSQEPTLFAGTIRENIAYG-KADARESEIKKA 1120
G V Q+I + N+ +LR I +V Q P F +I EN+AYG + A+ +
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 1121 AVLANAHE---FISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSA 1177
++ +A + +KD + + + LSGGQ+QR+ +ARA+ P +LL+DE SA
Sbjct: 125 EIVESALKGAALWQEVKDKLN----KSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSA 180
Query: 1178 LDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKN-----GRVVEQGSHNE 1231
LD ++ V+E + + T +V H + + SD A G++VE G +
Sbjct: 181 LDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQ 240
Query: 1232 L 1232
+
Sbjct: 241 I 241
|
Length = 259 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 6e-24
Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 10/237 (4%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW 418
D + G+N +V G+ G +G +G+GK+TTI +L P G + GY + R K
Sbjct: 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK- 63
Query: 419 LRSQMGLVNQEPVLF-ATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQV 477
+R +G+V Q + + EN+ + + +A + +L + + V
Sbjct: 64 VRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELF-ELGEAADRPV 122
Query: 478 GQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDK-VSKGRTTL 536
G SGG ++R+ IA +LI P +L LDE T+ LD ++ R + + I +G T L
Sbjct: 123 GT----YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178
Query: 537 IIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNR-GEGGEYYQMVELQQMASEND 591
+ H + + + I ++ G+++ G+ EL R G+ + ++Q + E
Sbjct: 179 LTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSLKVEVS 235
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 8e-24
Identities = 73/248 (29%), Positives = 121/248 (48%), Gaps = 29/248 (11%)
Query: 344 EIEFRDVYFCY-PSRP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVE 401
+I F+ V Y P + L +N+ +P+G V ++G +GSGKST + L P
Sbjct: 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 402 GEVLLDGYKI----RRLHLKWLRSQMGLVNQ--EPVLFATSITENILFGKD--GASMDDV 453
G V + I + LK LR ++G+V Q E LF ++ ++I FG G S +D
Sbjct: 62 GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDA 121
Query: 454 ISAAKAANA-----HDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLD 508
A+ + + + P F++SGGQ +R+AIA L +P++L+LD
Sbjct: 122 KQKAREMIELVGLPEELLARSP-----------FELSGGQMRRVAIAGVLAMEPEVLVLD 170
Query: 509 EATSALDAQSERIVQEAIDKV--SKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSH 565
E T+ LD + + + E K+ KG TT+++ H + R A+ I+V+ G V G+
Sbjct: 171 EPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTP 230
Query: 566 NELMNRGE 573
E+ +
Sbjct: 231 REIFADPD 238
|
Length = 290 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 98.3 bits (246), Expect = 1e-23
Identities = 54/204 (26%), Positives = 91/204 (44%), Gaps = 64/204 (31%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
L G+SL + G+ AL+G++G GKST++ +L Y P G + +D +
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGK------------- 62
Query: 1087 IALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGV 1146
FA DAR + I +
Sbjct: 63 -------EVSFASP---------RDARRAGI----------AMVY--------------- 81
Query: 1147 QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-----MGRTCVV 1201
QLS G++Q + +ARA+ +N +L+LDE T+AL + +E E L K++ G +
Sbjct: 82 QLSVGERQMVEIARALARNARLLILDEPTAAL-TPAEV---ERLFKVIRRLRAQGVAVIF 137
Query: 1202 VAHRLSTIQK-SDTIAVIKNGRVV 1224
++HRL + + +D + V+++GRVV
Sbjct: 138 ISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 18/226 (7%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL--HLKWL 419
L+G++L V G+ V L+G +G+GK+T + + P G ++ DG I L H +
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPH-ERA 76
Query: 420 RSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVG 478
R + V + +F ++ EN+L G D ++ +L + +
Sbjct: 77 RLGIAYVPEGRRIFPRLTVEENLLLGAYARR-DKEAQERDLEEVYELFPRL----KERRN 131
Query: 479 QLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE---AIDKVSK--GR 533
Q +SGG++Q +AIARAL+ PK+LLLDE + L + +IV+E AI ++ K G
Sbjct: 132 QRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIKELRKEGGM 188
Query: 534 TTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNRGEGGEYY 578
T L++ A+ VL+ G++V SG+ EL+ + E Y
Sbjct: 189 TILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVREAY 234
|
Length = 237 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 30/230 (13%)
Query: 1025 MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDE-----QDIRNYN 1079
M ++ + I + +G SGCGKST++ L R D +KG F QD+
Sbjct: 22 MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG 81
Query: 1080 LKQL--RSHIALVSQEPTLFAGTIRENIAYG------KADARESEIKKAAVLANAHEFIS 1131
+ + R +I +V Q+P F+ +I +N+A+G K D + +K A A
Sbjct: 82 VDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGD-RVKHALQGA------- 133
Query: 1132 GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALE 1191
+ D G+ LSGGQ+QR+ +ARAI P +LLLDE SALD ++ V+E +
Sbjct: 134 ALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMV 193
Query: 1192 KMMMGRTCVVVAHRL-STIQKSDTIAVI--------KNGRVVEQGSHNEL 1232
++ T +V H + I+ +DT A + G +VE G ++
Sbjct: 194 ELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQI 243
|
Length = 261 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 66/207 (31%), Positives = 108/207 (52%), Gaps = 14/207 (6%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL---HLKW 418
VL +NL + G+ V L G SGSGK+T + L+ EG + + G ++ L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 419 LRSQMGLVNQEPVLFATSIT--ENILFGKDGASMDDVISAAKA-ANAHDFITKLPDGYET 475
LR +G + Q L +T +N+ + + +S +A A + + G
Sbjct: 80 LRRNIGYIFQAHNLL-GFLTARQNV---QMALELQPNLSYQEARERARAMLEAV--GLGD 133
Query: 476 QVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GR 533
+ +SGGQKQR+AIARAL+ PK++L DE T+ALD++S R V E + K+++ G
Sbjct: 134 HLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGC 193
Query: 534 TTLIIAHRLSTIRTANLIMVLKAGKVV 560
T LI+ H + A+ I+ ++ GK++
Sbjct: 194 TILIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 17/230 (7%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL---- 1064
+E+K++ Y ++ + +S+ IE AL+G SGCGKST + + R D +
Sbjct: 22 LEVKDLSIYYG---EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78
Query: 1065 -KGSVFMDEQDI--RNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAA 1121
+G + + +I N N+ LR I +V Q+P F +I NI + A E ++ +
Sbjct: 79 SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGE---RRKS 135
Query: 1122 VLANAHE---FISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSAL 1178
VL E + + D + LSGGQ+QR+ +AR + P++LLLDE SAL
Sbjct: 136 VLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASAL 195
Query: 1179 DSVSESLVQEALEKMMMGRTCVVVAHRL-STIQKSDTIAVIKNGRVVEQG 1227
D +S + ++E + ++ + ++V H + ++ SD A NG +VE
Sbjct: 196 DPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245
|
Length = 268 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 71/235 (30%), Positives = 123/235 (52%), Gaps = 31/235 (13%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD--P---VEGEVLLDGYKI-- 411
++ +NL + +G SG GKST + L R ++ P VEGEVLLDG +
Sbjct: 16 SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYG 75
Query: 412 RRLHLKWLRSQMGLVNQEPVLFAT-SITENILFG------KDGASMDDVI-SAAKAANAH 463
+ +R +G+V Q P F T SI +N++ G ++ +D+++ + + AN
Sbjct: 76 PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGAN-- 133
Query: 464 DFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQ 523
L + + ++ + G +SGGQ+QR+ IARA+ +P +LL+DE SALD S ++
Sbjct: 134 -----LWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIE 188
Query: 524 EAIDKVSKGRTTLIIAH------RLSTIRTA--NLIMVLKAGKVVESGSHNELMN 570
+ I+++ + T +I+ H R+S +TA NL K G++VE ++ +
Sbjct: 189 DLINELKQDYTIVIVTHNMQQAARVSD-QTAFFNLEATGKPGRLVEIDDTEKIFS 242
|
Length = 258 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 73/220 (33%), Positives = 112/220 (50%), Gaps = 20/220 (9%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDIRN--YN 1079
LK ++L I + A++G SGCGKST I L L G + + +I +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 1080 LKQLRSHIALVSQEPTLFAGTIRENIAYG------KADARESEIKKAAVLANAHEFISGM 1133
L +LR +I +V Q+ F +I +N+AYG K + EI + ++ A +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVA--LWDEV 145
Query: 1134 KDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKM 1193
KD T + + LSGGQ+QR+ +ARA+ NP +LL+DE TSALD VS ++E + K+
Sbjct: 146 KDRLHT----QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL 201
Query: 1194 MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
T V+V H + + SD A G +VE N++
Sbjct: 202 KEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241
|
Length = 259 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-23
Identities = 76/258 (29%), Positives = 124/258 (48%), Gaps = 30/258 (11%)
Query: 345 IEFRDVYFCYPSRPD---TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVE 401
I+ ++V + Y S + L L +NL V G+ + ++G +GSGKST + P E
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 402 GEVLLDGYKIRRLHLKW-LRSQMGLVNQEP--VLFATSITENILFGKDGASMDD------ 452
G+V +DG W +R++ G+V Q P + AT + E++ FG + +
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 453 VISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATS 512
V + K +++ P +SGGQKQR+AIA L P+ ++ DE T+
Sbjct: 125 VDESLKKVGMYEYRRHAPH-----------LLSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 513 ALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570
LD R V I +++K G T ++I H + A+ I+V+ +GKVV G+ E+
Sbjct: 174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFK 233
Query: 571 RGE-----GGEYYQMVEL 583
E G + Q+ EL
Sbjct: 234 EVEMMKKIGLDVPQVTEL 251
|
Length = 280 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-23
Identities = 68/227 (29%), Positives = 122/227 (53%), Gaps = 14/227 (6%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
I +KN +F++ ++ ++ L ++L + G VA+VG +G GK+++I S
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLI------------SA 662
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHE 1128
+ E R+ +R +A V Q +F T+R+NI +G E + V A H+
Sbjct: 663 MLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHD 722
Query: 1129 FISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS-VSESLVQ 1187
+ + G T GERGV +SGGQKQR+++ARA+ N + + D+ SALD+ V +
Sbjct: 723 -LDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD 781
Query: 1188 EALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVA 1234
+ ++ + G+T V+V ++L + + D I ++ G + E+G++ EL
Sbjct: 782 KCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828
|
Length = 1622 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 2e-23
Identities = 62/217 (28%), Positives = 108/217 (49%), Gaps = 24/217 (11%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKIR--RLH 415
L + + +P + L+G SG GKST + R D + G++L +G I
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 416 LKWLRSQMGLVNQEPVLFATSITENILFG------KDGASMDDVI--SAAKAANAHDFIT 467
+ LR ++G+V Q P F SI EN+ +G K+ ++D ++ S AA
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAA------- 134
Query: 468 KLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAID 527
L D + ++ +SGGQ+QR+ IAR L +P+++L+DE SALD + +++ I+
Sbjct: 135 -LWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIE 193
Query: 528 KVSKGRTTLIIAHRLS-TIRTANLIMVLKAGKVVESG 563
+ K T +I+ H + R ++ + GK++E
Sbjct: 194 DLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFD 230
|
Length = 253 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 72/239 (30%), Positives = 121/239 (50%), Gaps = 21/239 (8%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+E+ + F Y R L +S + G+ VAL+G +G GKST+ LL R Y +G +
Sbjct: 2 LEVAGLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTL-FAGTIRENIAYGKA----DARESEIKKAAVL 1123
+ D+R L + +V Q+PTL ++R+N+ Y A E+ + A +L
Sbjct: 59 SVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELL 117
Query: 1124 ANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183
A G+ + D ++ +L+GG ++R+ +ARA+L P++LLLDE T LD S
Sbjct: 118 ARL-----GLAERAD----DKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASR 168
Query: 1184 SLVQEALEKMMMGR-TCVVVA-HRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGA 1240
+ + + + + V+ A H + I+ D + V+ GRV+ G+ EL + GGA
Sbjct: 169 AAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRG-ATGGA 226
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 58/194 (29%), Positives = 102/194 (52%), Gaps = 14/194 (7%)
Query: 350 VYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGY 409
+ Y +P L+ ++L + +G+ V ++G SG GK+T + L+ F P G + L+G
Sbjct: 9 LSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR 67
Query: 410 KIRRLHLKWLRSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDFITK 468
+I + ++ G+V Q L ++ +N+ FG ++ A + AH +
Sbjct: 68 RI-----EGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIE---KAQRREIAHQMLAL 119
Query: 469 LPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDK 528
+ G E + +Q+SGG +QR+ IARAL +P++LLLDE ALDA + +QE +
Sbjct: 120 V--GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLD 177
Query: 529 VSK--GRTTLIIAH 540
+ + G+ L+I H
Sbjct: 178 LWQETGKQVLLITH 191
|
Length = 259 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 2e-23
Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 16/223 (7%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+ L + F+Y +P L G+ A+VG SG GKST++ L+ F P G V
Sbjct: 1 VRLDKIRFSYGEQPMH-----FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAH 1127
++ D+ ++++ QE LFA T+ +N+ G +K A A
Sbjct: 56 LINGVDVTA--APPADRPVSMLFQENNLFAHLTVEQNVGLG----LSPGLKLTAEDRQAI 109
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
E + G +LSGG++QR+ALAR ++++ +LLLDE +ALD + +
Sbjct: 110 EVALA-RVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML 168
Query: 1188 EALEKM--MMGRTCVVVAHRLSTIQKSDTIAV-IKNGRVVEQG 1227
+ + + T ++V H+ ++ V + NGR+ QG
Sbjct: 169 DLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 74/235 (31%), Positives = 126/235 (53%), Gaps = 28/235 (11%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+ LKN+ + ++ L+L I+ G V L+G SGCGK+T++ L+ P +G +
Sbjct: 7 VVLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYG------KADARESEIKKAA 1121
F+D +D+ + +++Q I +V Q LF ++ EN+ YG + R+ +K+A
Sbjct: 64 FIDGEDVTHRSIQQ--RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEAL 121
Query: 1122 VLANAHEFISGMKDGY-DTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS 1180
L + ++G +D Y D Q+SGGQ+QR+ALARA++ P +LL DE S LD+
Sbjct: 122 ELVD----LAGFEDRYVD--------QISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
Query: 1181 VSESLVQEALEKMM--MGRTCVVVAHRLS-TIQKSDTIAVIKNGRVVEQGSHNEL 1232
++E + ++ T + V H S SDT+ V+ G++++ GS EL
Sbjct: 170 NLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 69/232 (29%), Positives = 118/232 (50%), Gaps = 20/232 (8%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
I+L + Y L ++L G+T+ L+G SG GKS+++ +L P G++
Sbjct: 3 IQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 1069 FMDEQDI------RNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAA 1121
+ + ++ LR ++ +V Q+ L+ T++EN+ +A R + K
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLI--EAPCRVLGLSKDQ 117
Query: 1122 VLANAHEFISGM--KDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD 1179
LA A + + + K D Y + LSGGQ+QR+A+ARA++ P +LL DE T+ALD
Sbjct: 118 ALARAEKLLKRLRLKPYADRY----PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
Query: 1180 -SVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAV-IKNGRVVEQGSH 1229
++ +V E G T V+V H + +K+ + V ++NG +VEQG
Sbjct: 174 PEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225
|
Length = 242 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (254), Expect = 3e-23
Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 9/226 (3%)
Query: 346 EFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG--- 402
E R+ F Y +R VL LNL + K +G SG GKST + L + D +EG
Sbjct: 82 EIRNFNFWYMNRTKH-VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 403 --EVLLDGYKIR--RLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAK 458
E+ G R ++ LR+++G+V Q+P F SI +N+ +G ++D K
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 459 AANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS 518
L D + + + G +SGGQ+QR+ IARA+ +P++LL+DE TSALD +
Sbjct: 201 IVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIA 260
Query: 519 ERIVQEAIDKVSKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESG 563
++E I ++ K + +I+ H ++ R ++ + G + E+G
Sbjct: 261 TAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306
|
Length = 329 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 70/220 (31%), Positives = 112/220 (50%), Gaps = 22/220 (10%)
Query: 361 LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLL--DGYKI-- 411
L+ +N+ V + L+G SG GKST + R +D EGE++L D I
Sbjct: 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89
Query: 412 RRLHLKWLRSQMGLVNQEPVLFATSITENILFG------KDGASMDDVISAAKAANAHDF 465
+ +R ++ +V Q+P F SI EN+ +G K + +++ + A A
Sbjct: 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAA--- 146
Query: 466 ITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEA 525
L D + ++G L F +SGGQ+QR+ IARAL DP+ILL DE TSALD + ++E
Sbjct: 147 ---LWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEEL 203
Query: 526 IDKVSKGRTTLIIAHRL-STIRTANLIMVLKAGKVVESGS 564
I + T LI+ H + R ++ + G+++E G+
Sbjct: 204 ISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243
|
Length = 265 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 4e-23
Identities = 37/98 (37%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 463 HDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIV 522
D + ++G + Q+SGGQ+QR+A+ARAL+ +P +LLLDE TS LD S +
Sbjct: 61 KDIAKLPLEELRRRIGYV-PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERL 119
Query: 523 QEAIDKVS-KGRTTLIIAHRLSTIRTA-NLIMVLKAGK 558
E + +++ +GRT +I+ H A + ++VLK GK
Sbjct: 120 LELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 4e-23
Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 29/197 (14%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKST---TIALLQRFYDPVEGEVLLDGYKIRRLH 415
D ++L LNL + GK ++G SGSGKST I LL++F G+V L+G + L+
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDS---GQVYLNGQETPPLN 66
Query: 416 ----LKWLRSQMGLVNQEPVLFAT-SITENILFG------KDGASMDDVISAAKAANAHD 464
K+ R ++G + Q L ++ EN+ G + A + +
Sbjct: 67 SKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNL 126
Query: 465 FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE 524
+ + +++SGG++QR+A+ARA+++ P ++L DE T +LD ++ V +
Sbjct: 127 KLKQKI-----------YELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLD 175
Query: 525 AIDK-VSKGRTTLIIAH 540
+ + +G+T +I+ H
Sbjct: 176 LLLELNDEGKTIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (249), Expect = 4e-23
Identities = 75/237 (31%), Positives = 115/237 (48%), Gaps = 43/237 (18%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIR--------- 1076
+LKG+SL+ AG ++++G SG GKST + + P +GS+ ++ Q I
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 1077 ----NYNLKQLRSHIALVSQEPTLFAG-TIRENI--------AYGKADARESEIKKAAVL 1123
L+ LR+ + +V Q L++ T+ EN+ K +ARE +K A
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLA-- 137
Query: 1124 ANAHEFISGMKDGYDTYC-GERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVS 1182
K G D G+ V LSGGQ+QR+++ARA+ P +LL DE TSALD
Sbjct: 138 ----------KVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP-- 185
Query: 1183 ESLVQEALEKMMM----GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
LV E L M G+T VVV H + + S + + G++ E+G+ +L
Sbjct: 186 -ELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG 241
|
Length = 257 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 4e-23
Identities = 64/240 (26%), Positives = 117/240 (48%), Gaps = 24/240 (10%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IE RD+ CY L +N P + ++G +G+GKST P G V
Sbjct: 4 IETRDL--CYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEP--VLFATSITENILFGKDGASMDD------VISA 456
L+ G I + +++ +R +GLV Q P +F+ ++ ++I FG +D+ V SA
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 457 AKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDA 516
+ ++P +SGG+K+R+AIA + +P++L+LDE T+ LD
Sbjct: 122 LHMLGLEELRDRVPH-----------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170
Query: 517 QSERIVQEAIDKVSK--GRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNRGE 573
Q + + + ++ + + G T + H+L + A+ I V+ G++V G+ E+ + +
Sbjct: 171 QGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230
|
Length = 277 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 5e-23
Identities = 74/248 (29%), Positives = 119/248 (47%), Gaps = 42/248 (16%)
Query: 1005 MRGRIELK--NVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD 1062
M RI++K N+++ ++ ++L IE A +G SGCGKST++ L R ++
Sbjct: 1 MAKRIDVKDLNIYYG-----SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHE 55
Query: 1063 PL-----KGSVFMDEQDIRNYNLK--QLRSHIALVSQEPTLF-AGTIRENIAYG------ 1108
+ +G V +D +D+ + +R I +V Q P F +IR+N+ G
Sbjct: 56 VIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGV 115
Query: 1109 ----KADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILK 1164
D + + A L N +KD D + G LSGGQ+QR+ +ARAI
Sbjct: 116 RNKKDLDELVEKSLRGANLWNE------VKDRLD----KPGGGLSGGQQQRLCIARAIAV 165
Query: 1165 NPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIA------V 1217
P +LL+DE SALD +S +++ + ++ T V+V H + + SD A
Sbjct: 166 EPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEAT 225
Query: 1218 IKNGRVVE 1225
K GR+VE
Sbjct: 226 GKPGRLVE 233
|
Length = 258 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 5e-23
Identities = 74/236 (31%), Positives = 111/236 (47%), Gaps = 35/236 (14%)
Query: 1009 IELKNVFFAYPTRPDQM-ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
IE+ ++ ++ ILKG+ L ++ G+TVA+VG SG GKST++ +L DP G
Sbjct: 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66
Query: 1068 VFMDEQDIRNYN---LKQLRS-HIALVSQE----PTLFAGTIRENIAY-----GKADARE 1114
V + Q + + LR+ H+ V Q P L T EN+A G++ A
Sbjct: 67 VRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNL---TALENVALPLELRGESSADS 123
Query: 1115 SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEA 1174
KA + A G+ Y QLSGG++QR+ALARA P +L DE
Sbjct: 124 RAGAKALLEA------VGLGKRLTHYPA----QLSGGEQQRVALARAFAGRPDVLFADEP 173
Query: 1175 TSALD-----SVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVE 1225
T LD +++ L E+ G T V+V H + D +++GR+VE
Sbjct: 174 TGNLDRATGDKIADLLFALNRER---GTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 6e-23
Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 27/217 (12%)
Query: 358 PDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLK 417
L G++L + G GL+G +G+GK+T + +L P G + +DG + + +
Sbjct: 11 GKKRALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK-QPQ 68
Query: 418 WLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDF---------ITK 468
LR ++G + QE ++ L D I+ K + + +
Sbjct: 69 KLRRRIGYLPQEFGVYPNFTVREFL---------DYIAWLKGIPSKEVKARVDEVLELVN 119
Query: 469 LPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERI-VQEAID 527
L D + ++G L SGG ++R+ IA+AL+ DP IL++DE T+ LD + ERI + +
Sbjct: 120 LGDRAKKKIGSL----SGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE-ERIRFRNLLS 174
Query: 528 KVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESG 563
++ + R ++ H + + N + VL GK+V G
Sbjct: 175 ELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 6e-23
Identities = 67/233 (28%), Positives = 104/233 (44%), Gaps = 38/233 (16%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
L +S + G+ L+G +G GK+T+ L+ F P GSV D +DI L H
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDI-----TGLPPH 70
Query: 1087 ------IALVSQEPTLFAG-TIRENI----------AYGKADARESEIKKAAVLANAHEF 1129
I Q P LF T+ EN+ A AR E A E
Sbjct: 71 EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREE---REARERAEEL 127
Query: 1130 IS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
+ G+ D D GE LS GQ++R+ +ARA+ +P +LLLDE + L+ +
Sbjct: 128 LERVGLADLADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA 183
Query: 1188 EALEKM-MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGS-----HNELV 1233
E + ++ G T ++V H + + +D + V+ GRV+ +G+ +N V
Sbjct: 184 ELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPRV 236
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.7 bits (248), Expect = 6e-23
Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 30/201 (14%)
Query: 1032 LKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLK-------QLR 1084
LKI A K +A +G SGCGKST++ R D + G+ R+ N+ +LR
Sbjct: 41 LKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLR 100
Query: 1085 SHIALVSQEPTLFAGTIRENIAYG-KADAR--------ESEIKKAAVLANAHEFISGMKD 1135
+ +V Q P F +I ENIA+ +A+ E +++AA+ + +
Sbjct: 101 RQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLK---- 156
Query: 1136 GYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM 1195
E+G LSGGQ+QR+ +ARAI P +LL+DE SALD +S V+E ++
Sbjct: 157 -------EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE 209
Query: 1196 GRTCVVVAHRLSTIQKSDTIA 1216
T ++V H + Q++ +A
Sbjct: 210 QYTIIMVTHNM---QQASRVA 227
|
Length = 274 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 9e-23
Identities = 68/213 (31%), Positives = 107/213 (50%), Gaps = 23/213 (10%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW 418
D +L ++L V AG+ + + G SG GKST + ++ P G +L +G + L +
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74
Query: 419 LRSQMGLVNQEPVLFATSITENILF-------GKDGASMDDVISAAKAANAHDFITKLPD 471
R Q+ Q P LF ++ +N++F D A+ D++ A+ A +TK
Sbjct: 75 YRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLL--ARFALPDSILTKNIT 132
Query: 472 GYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDK--V 529
++SGG+KQRIA+ R L PKILLLDE TSALD ++R ++E I +
Sbjct: 133 -----------ELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVR 181
Query: 530 SKGRTTLIIAH-RLSTIRTANLIMVLKAGKVVE 561
+ L I H + IR A+ ++ L+ G E
Sbjct: 182 EQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214
|
Length = 223 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 9e-23
Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 24/221 (10%)
Query: 1020 TRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN 1079
Q +L +SL +++G+TVAL+G+SGCGKST+ LL P +G+V + + N
Sbjct: 21 KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN 80
Query: 1080 ---LKQLRSHIALVSQEPTLFA----GTIRENIAYGKADARE-----SEIKKAAVLANAH 1127
K R I +V Q+ + A T+RE I RE + KA LA A
Sbjct: 81 RAQRKAFRRDIQMVFQDS-ISAVNPRKTVREII-------REPLRHLLSLDKAERLARAS 132
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
E + + D D+ +R QLSGGQ QR+ LARA+ P +L+LDEA S LD V ++ V
Sbjct: 133 EMLRAV-DLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVI 191
Query: 1188 EALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVE 1225
L+K+ G C+ + H L +++ + V+ NG++VE
Sbjct: 192 RLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-22
Identities = 82/287 (28%), Positives = 138/287 (48%), Gaps = 38/287 (13%)
Query: 299 LGALPNL-TAITEAKVAATRIFEMV---DR----TPAIDTDDKMGKALSYVRGEIEFRDV 350
L LPNL T A V+ R+ E++ +R P ++ I ++
Sbjct: 571 LFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLP----------AISIKNG 620
Query: 351 YFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTI-ALLQRFYDPVEGEVLLDGY 409
YF + S+ + L +NL VP G V +VG +G GK++ I A+L + V++
Sbjct: 621 YFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI--- 677
Query: 410 KIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGK--DGASMDDVISAAKAANAHDFIT 467
R + V Q +F ++ +NILFG D + I A HD +
Sbjct: 678 ----------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVT--ALQHD-LD 724
Query: 468 KLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIV-QEAI 526
LP G T++G+ G +SGGQKQR+++ARA+ + + + D+ SALDA R V + I
Sbjct: 725 LLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCI 784
Query: 527 DKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGE 573
+G+T +++ ++L + + I+++ G + E G++ EL N G
Sbjct: 785 KDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGP 831
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-22
Identities = 115/465 (24%), Positives = 216/465 (46%), Gaps = 47/465 (10%)
Query: 124 QVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWR-LSLAAL--PLTLMFI 180
+V + I+ D+N++Q +I+ L L + F ++ S +L ++ L +A+L L L +
Sbjct: 399 KVTNMITTDANALQ-----QIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLL 453
Query: 181 VP--GLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKT 238
+P L+ K M + + ++ GI + ++S+ TV Y E R +
Sbjct: 454 IPLQTLIVRK-MRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEE 512
Query: 239 MELGIKQGFI---KGLLMGSMGMIYVGWAFQAWV--GSYLVTEKGEKGGSIFVAGVSIIM 293
+ K + ++ S+ ++ +F +V G L + S+F +++
Sbjct: 513 LSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLF----AVLR 568
Query: 294 GGLSVLGALPNL-TAITEAKVAATRIFEMV---DRTPAIDTDDKMGKALSYVRGEIEFRD 349
L++L PNL + + A V+ RI E++ +R A + + G I ++
Sbjct: 569 SPLNML---PNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAP------AISIKN 619
Query: 350 VYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGY 409
YF + S+ L +NL +P G V +VGG+G GK++ I+ + E ++
Sbjct: 620 GYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV--- 676
Query: 410 KIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKL 469
+R + V Q +F ++ ENILFG D S + A HD + L
Sbjct: 677 ---------IRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHD-LDLL 726
Query: 470 PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ-SERIVQEAIDK 528
P T++G+ G +SGGQKQR+++ARA+ + I + D+ SALDA + ++ +
Sbjct: 727 PGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKD 786
Query: 529 VSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGE 573
KG+T +++ ++L + + I+++ G + E G+ EL G
Sbjct: 787 ELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGS 831
|
Length = 1495 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 1e-22
Identities = 74/244 (30%), Positives = 120/244 (49%), Gaps = 42/244 (17%)
Query: 349 DVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGE 403
DVY+ D L+G+++ +P L+G SG GKST + L R D ++G
Sbjct: 52 DVYY-----GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGS 106
Query: 404 VLLDGYKIRR--LHLKWLRSQMGLVNQEPVLFATSITENI-----------------LFG 444
V LDG I + ++L LR ++G+V Q P F SI ENI L G
Sbjct: 107 VELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLG 166
Query: 445 KDGASMDDVI---SAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501
+D +D + S +AA L D ++ +SGGQ+QR+ IAR L D
Sbjct: 167 RDDKDAEDELVERSLRQAA--------LWDEVNDRLDDNALGLSGGQQQRLCIARCLAVD 218
Query: 502 PKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRL-STIRTANLIMV-LKAGKV 559
P+++L+DE SALD + +++ I+++++ T +++ H + R ++ V L G++
Sbjct: 219 PEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGEL 278
Query: 560 VESG 563
VE
Sbjct: 279 VEYD 282
|
Length = 305 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 1e-22
Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 17/197 (8%)
Query: 376 VGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKI----RRLHLKWLRSQMGLVNQEPV 431
G+ G SG+GKST + + P G ++L+G + ++++L + ++GLV Q+
Sbjct: 26 TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA 85
Query: 432 LFA-TSITENILFG-KDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQK 489
LF ++ EN+ FG K + +D IS + + + L + Y QL SGG+K
Sbjct: 86 LFPHLNVRENLAFGLKRKRNREDRISVDELLDLLG-LDHLLNRY---PAQL----SGGEK 137
Query: 490 QRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTI-R 546
QR+A+ARAL P++LLLDE SALD + + ++ K + + H LS
Sbjct: 138 QRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEY 197
Query: 547 TANLIMVLKAGKVVESG 563
A+ I+V++ G++ G
Sbjct: 198 LADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 1e-22
Identities = 61/229 (26%), Positives = 113/229 (49%), Gaps = 26/229 (11%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+E +V + + L LNL + G+ V L+G SG GK+TT+ ++ +P G +
Sbjct: 1 VELENVTKRFGNVT---ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFA-TSITENILFG-----KDGASMDD-VISAA 457
+ G + L K + +V Q L+ ++ +NI FG +D+ V A
Sbjct: 58 YIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 458 KAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ 517
+ + + P Q+SGGQ+QR+A+ RA++R+PK+ L+DE S LDA+
Sbjct: 116 ELLQIEHLLDRKPK-----------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
Query: 518 SERIVQEAIDKVSK--GRTTLIIAH-RLSTIRTANLIMVLKAGKVVESG 563
++ + ++ + G TT+ + H ++ + A+ I V+ G++ + G
Sbjct: 165 LRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-22
Identities = 67/220 (30%), Positives = 115/220 (52%), Gaps = 22/220 (10%)
Query: 354 YPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRR 413
+ P L L+ +++ VP GK ++G +GSGKST + L ++ EG V
Sbjct: 668 FELEPKVL-LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV--------- 717
Query: 414 LHLKWLRSQMGLVNQEPVLFATSITENILF--GKDGASMDDVISAAK-AANAHDFITKLP 470
W + V Q+ + ++ NILF +D A + D + ++ A+ + +L
Sbjct: 718 ----WAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEAD----LAQLG 769
Query: 471 DGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ-SERIVQEAIDKV 529
G ET++G+ G +SGGQK R+++ARA+ + + LLD+ SALDA ER+V+E
Sbjct: 770 GGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGA 829
Query: 530 SKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELM 569
G+T ++ H++ + A+ ++ L G+V SGS + M
Sbjct: 830 LAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFM 869
|
Length = 1560 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 1e-22
Identities = 66/206 (32%), Positives = 106/206 (51%), Gaps = 29/206 (14%)
Query: 367 NLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLV 426
+L V G+ V ++G SG+GKST + L+ F +P G + ++ L + + ++
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPY--QRPVSML 75
Query: 427 NQEPVLFA-TSITENILFG-KDGASM-----DDVISAAKAANAHDFITKLPDGYETQVGQ 479
QE LFA ++ +NI G G + + V+ AA+ D++ +LP+
Sbjct: 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-------- 127
Query: 480 LGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-----KGRT 534
Q+SGGQ+QR+A+AR L+R ILLLDE SALD + +E + V + RT
Sbjct: 128 ---QLSGGQRQRVALARCLVRPNPILLLDEPFSALD---PLLREEMLALVKQLCSERQRT 181
Query: 535 TLIIAHRLS-TIRTANLIMVLKAGKV 559
L++ H LS A+ I V+ GK+
Sbjct: 182 LLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 1e-22
Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 35/244 (14%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-- 1062
M+ IE N+ Y ++KG+ LKI AL+G SGCGKST++ R +
Sbjct: 1 MKFAIETVNLRVYYG---SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELN 57
Query: 1063 ---PLKGSVFMDEQDIRNYNLK--QLRSHIALVSQEPTLFAG-TIRENIAYG-------- 1108
++G V + ++I + ++ ++R + +V Q P F TI +N+A G
Sbjct: 58 EEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVK 117
Query: 1109 ---KADAR-ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILK 1164
+ D R E +KKAA+ +KD + Y LSGGQ+QR+ +ARA+
Sbjct: 118 SKKELDERVEWALKKAALWDE-------VKDRLNDYPS----NLSGGQRQRLVIARALAM 166
Query: 1165 NPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRV 1223
P ILL+DE T+ +D V + ++E L ++ T V+V H + + SD +A + G++
Sbjct: 167 KPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL 226
Query: 1224 VEQG 1227
+E G
Sbjct: 227 IEVG 230
|
Length = 253 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 1e-22
Identities = 74/232 (31%), Positives = 115/232 (49%), Gaps = 37/232 (15%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLL---ERFYDPLKGSVFMD-----EQDIRN 1077
+L GL+ + AG+ VAL+G SG GKSTI+ +L E + G + ++ RN
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDE---GQIQVEGEQLYHMPGRN 71
Query: 1078 --------YNLKQLRSHIALVSQEPTLFA-GTIRENIAYGKADARESEIKKAAVLANAHE 1128
+L+Q+R+ I +V Q LF T+ +N+ +A + +A A E
Sbjct: 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVT--EAPVLVLGMARAEAEKRAME 129
Query: 1129 FIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
+ G+ D D QLSGGQ+QR+A+ARA+ P ++L DE TSALD LV
Sbjct: 130 LLDMVGLADKADHM----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDP---ELV 182
Query: 1187 QEALEKMM-----MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
E L + T ++V H + ++ +D + GR+VEQG +E+
Sbjct: 183 GEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 1e-22
Identities = 72/229 (31%), Positives = 119/229 (51%), Gaps = 31/229 (13%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL------- 414
VL GLN V AG+ V L+G SGSGKST + +L EG++ ++G ++ +
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 415 ------HLKWLRSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDFIT 467
HL+ +R+++G+V Q LF ++ +N+ A + ++ A A
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTE----APV--LVLGMARAEAEKRAM 128
Query: 468 KLPD--GYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEA 525
+L D G + + Q+SGGQ+QR+AIARAL PK++L DE TSALD + +V E
Sbjct: 129 ELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE---LVGEV 185
Query: 526 IDKVSK-----GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNEL 568
++ + + T L++ H + R A+ + G++VE G +E+
Sbjct: 186 LNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-22
Identities = 62/228 (27%), Positives = 115/228 (50%), Gaps = 21/228 (9%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+E R + +P + ++L V G+ L+G +G+GKST + +L Y P GE+
Sbjct: 5 LEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 405 LLDGYKIRRLHLKW--LRSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAAN 461
+DG ++ R+ +R +G+V+Q +L T ++ ENI+ G + + + A
Sbjct: 62 RVDGKEV-RIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR 120
Query: 462 AHDFITKL-----PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSAL-D 515
+ + PD V L S G++QR+ I +AL R ++L+LDE T+ L
Sbjct: 121 IKELSERYGLPVDPDAK---VADL----SVGEQQRVEILKALYRGARLLILDEPTAVLTP 173
Query: 516 AQSERIVQEAIDKVSKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVES 562
+++ + + ++G+T + I H+L + A+ + VL+ GKVV +
Sbjct: 174 QEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT 221
|
Length = 501 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 1e-22
Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 27/246 (10%)
Query: 342 RGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD--- 398
+IE RD+ + VL G+NL +P L+G SGSGKST + + R +
Sbjct: 1 MNKIEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYP 57
Query: 399 --PVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFAT-SITENILFG-------KDGA 448
V GEV LDG I ++ + LR ++ +V Q P SI EN+ G K
Sbjct: 58 EARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKK 117
Query: 449 SMDDVISAA--KAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILL 506
+ + + A KA +L D + ++ ++SGGQ+QR+ IARAL P++LL
Sbjct: 118 ELQERVRWALEKA--------QLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLL 169
Query: 507 LDEATSALDAQSERIVQEAIDKVSKGRTTLIIAH-RLSTIRTANLIMVLKAGKVVESGSH 565
DE T+ LD ++ ++ ++ K T +++ H R ++ + L G++VE G
Sbjct: 170 ADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPT 229
Query: 566 NELMNR 571
E+
Sbjct: 230 REVFTN 235
|
Length = 250 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 1e-22
Identities = 68/230 (29%), Positives = 120/230 (52%), Gaps = 16/230 (6%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP----- 1063
I+L + Y Q L ++L G+T+ L+G SG GKS+++ +L P
Sbjct: 3 IQLNGINCFYGA--HQ-ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 1064 -LKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAA 1121
+ G+ F + + +++LR ++ +V Q+ L+ T+++N+ +A R + K
Sbjct: 60 NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLI--EAPCRVLGLSKDQ 117
Query: 1122 VLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD-S 1180
LA A + + ++ Y + LSGGQ+QR+A+ARA++ P +LL DE T+ALD
Sbjct: 118 ALARAEKLLERLR--LKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE 175
Query: 1181 VSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAV-IKNGRVVEQGSH 1229
++ +V E G T V+V H + +K+ + V ++NG +VEQG
Sbjct: 176 ITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225
|
Length = 242 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 1e-22
Identities = 69/224 (30%), Positives = 106/224 (47%), Gaps = 26/224 (11%)
Query: 364 QGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP----VEGEVLLDGY-----KIRRL 414
Q LNL + G+ + LVG SGSGKS T + P GE+LLDG IR
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR 62
Query: 415 HLKW-LRSQMGLVNQEPVL-FATSITENIL-FGKDGASMDDVISAA-KAANAHDFITKLP 470
H+ +++ N P+ E + GK +I A +A LP
Sbjct: 63 HIATIMQNPRTAFN--PLFTMGNHAIETLRSLGKLSKQARALILEALEAVG-------LP 113
Query: 471 DGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS 530
D E + + FQ+SGG QR+ IA AL+ +P L+ DE T+ LD ++ V + + ++
Sbjct: 114 DP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR 172
Query: 531 KGRTT--LIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNR 571
+ T L+I H L + R A+ + V+ G++VE G+ E+
Sbjct: 173 QLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.4 bits (242), Expect = 2e-22
Identities = 75/238 (31%), Positives = 116/238 (48%), Gaps = 23/238 (9%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVE--- 401
I +DV+ Y + L G++L + L+G SG GKST + L R D +E
Sbjct: 5 ISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61
Query: 402 --GEVLLDGYKI--RRLHLKWLRSQMGLVNQEPVLFATSITENILFG------KDGASMD 451
GE+ +G I ++ L LR ++G+V Q+P F S+ +N+ +G KD +D
Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID 121
Query: 452 DVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEAT 511
+ + A TK Q SGGQ+QRI IARAL PK++LLDE T
Sbjct: 122 QRVEESLKQAAIWKETKDNLDRNAQA------FSGGQQQRICIARALAVRPKVVLLDEPT 175
Query: 512 SALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNEL 568
SALD S ++E + ++ T +++ H L R ++ L G ++E+G E+
Sbjct: 176 SALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
|
Length = 251 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (243), Expect = 2e-22
Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 28/245 (11%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----P 399
I+ +D+ F Y + + ++G+++ + K ++G SG GKST I L R +
Sbjct: 8 IKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 400 VEGEVLLDGYKI--RRLHLKWLRSQMGLVNQEPVLFATSITENILFG------KDGASMD 451
VEG V G I R+++ LR Q+G+V Q P F SI EN+ +G A +D
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 452 DVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEAT 511
+++ +A A L + ++ + +SGGQ+QR+ IARAL PK+LL+DE
Sbjct: 125 EIVESALKGAA------LWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178
Query: 512 SALDAQSERIVQEAIDKVSKGRTTLIIAHRL-STIRTANLIMVL-----KAGKVVESGSH 565
SALD + V+E I + T I+ H + R ++ + G++VE G
Sbjct: 179 SALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238
Query: 566 NELMN 570
++ +
Sbjct: 239 TQIFS 243
|
Length = 259 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 3e-22
Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 21/186 (11%)
Query: 370 VPAGKSVGLVGGSGSGKSTTIALLQRFYDPVE-----GEVLLDGYKI--RRLHLKWLRSQ 422
+P GK L+G SG GKST + L R D +E G VL DG + R+ +R +
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95
Query: 423 MGLVNQEPVLFATSITENILFGK--DGAS--MDDVI--SAAKAANAHDFITKLPDGYETQ 476
+G+V Q+P F SI ENI FG +G + MD+++ S KAA + KL +
Sbjct: 96 IGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNES---- 151
Query: 477 VGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTL 536
G+ +SGGQ+QR+ IAR + +P+++L+DE SALD S ++E + ++ K T +
Sbjct: 152 ----GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIV 207
Query: 537 IIAHRL 542
I+ H +
Sbjct: 208 IVTHNM 213
|
Length = 269 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 3e-22
Identities = 65/220 (29%), Positives = 118/220 (53%), Gaps = 16/220 (7%)
Query: 1018 YPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRN 1077
+ P +++L+ +S+ + GK ++G +G GKST++ L ++ +G V+ +
Sbjct: 668 FELEP-KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------ 720
Query: 1078 YNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGY 1137
RS IA V Q+ + T+R NI + + + + A ++ ++ + G
Sbjct: 721 ------RS-IAYVPQQAWIMNATVRGNILFFDEE-DAARLADAVRVSQLEADLAQLGGGL 772
Query: 1138 DTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS-VSESLVQEALEKMMMG 1196
+T GE+GV LSGGQK R++LARA+ N + LLD+ SALD+ V E +V+E + G
Sbjct: 773 ETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAG 832
Query: 1197 RTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALS 1236
+T V+ H++ + ++D + + +GRV GS + + S
Sbjct: 833 KTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTS 872
|
Length = 1560 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 3e-22
Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 25/225 (11%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKI--RRLH 415
L ++L + L+G SGSGKST + + R D + G ++ +G+ I R
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 416 LKWLRSQMGLVNQEPVLFATSITENILFG------KDGASMDDVI-SAAKAANAHDFIT- 467
LR ++G+V Q+P F SI EN+++G KD +D+ + + K A+ D +
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD 140
Query: 468 KLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAID 527
+L +++ +G +SGGQ+QR+ IAR L PKI+LLDE TSALD S ++E +
Sbjct: 141 RL---HDSALG-----LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLL 192
Query: 528 KVSKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNEL-MN 570
+ T L++ + R ++ G ++E ++ MN
Sbjct: 193 GLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237
|
Length = 252 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (241), Expect = 4e-22
Identities = 73/248 (29%), Positives = 126/248 (50%), Gaps = 32/248 (12%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----P 399
I+ ++ F Y ++ +L+G+++ + K ++G SG GKST + L R +
Sbjct: 8 IKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVR 64
Query: 400 VEGEVLLDGYKI--RRLHLKWLRSQMGLVNQEPVLFATSITENILFG------KDGASMD 451
VEG V I RR++L LR Q+ +V+ +P LF S+ +N+ +G + +D
Sbjct: 65 VEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEID 124
Query: 452 DVI-SAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEA 510
D++ SA K A+ L D + ++ + +SGGQ+QR+ IARAL PK+LL+DE
Sbjct: 125 DIVESALKDAD-------LWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEP 177
Query: 511 TSALDAQSERIVQEAID--KVSKGRTTLIIAHRLSTI-RTANLIMVLKA-----GKVVES 562
LD + V+ I ++ T +I++H L + R ++ K G++VE
Sbjct: 178 CFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237
Query: 563 GSHNELMN 570
G ++ N
Sbjct: 238 GLTKKIFN 245
|
Length = 261 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 4e-22
Identities = 69/238 (28%), Positives = 117/238 (49%), Gaps = 18/238 (7%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
++ ++ + Y T L+G+N+ + G+ ++GG+G+GKST L P G +
Sbjct: 6 LKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 405 LLDGYKI--RRLHLKWLRSQMGLVNQEP--VLFATSITENILFG--KDGASMDDVISAAK 458
L DG I R L LR +G+V Q+P LF+ S+ +++ FG D+V
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 459 AANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS 518
A I L D + +S GQK+R+AIA L+ +PK+L+LDE T+ LD
Sbjct: 124 NALKRTGIEHLKD-------KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176
Query: 519 ERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNRGE 573
+ + + ++ K G T +I H + + + + V+K G+V+ G+ E+ E
Sbjct: 177 VSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE 234
|
Length = 283 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 4e-22
Identities = 61/246 (24%), Positives = 117/246 (47%), Gaps = 25/246 (10%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
M +E++ + +P + +SL ++ G+ AL+G++G GKST++ +L Y P
Sbjct: 1 MEPALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD 57
Query: 1065 KGSVFMDEQDIRNYNLKQ-LRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAV 1122
G + +D +++R + + +R I +V Q L T+ ENI G ++ I +
Sbjct: 58 SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQA 117
Query: 1123 LANAHEFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS 1180
A E G+ D + LS G++QR+ + +A+ + +L+LDE T+ L
Sbjct: 118 RARIKELSERYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVL-- 171
Query: 1181 VSESLVQEALE--KMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVV------EQGSH 1229
+ E E + + G+T + + H+L + +D + V++ G+VV + +
Sbjct: 172 -TPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETTE 230
Query: 1230 NELVAL 1235
EL L
Sbjct: 231 EELAEL 236
|
Length = 501 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 5e-22
Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 19/223 (8%)
Query: 1013 NVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDE 1072
N+FF+ +LK ++LKIE G+ +A+ G +G GK++++ L+ +P +G +
Sbjct: 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI---- 94
Query: 1073 QDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKA--DARESEIKKAAVLANAHEFI 1130
+ I+ SQ + GTI+ENI +G + + R + KA L E I
Sbjct: 95 ---------KHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQL---EEDI 142
Query: 1131 SGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEA- 1189
+ + +T GE G+ LSGGQ+ RI+LARA+ K+ + LLD LD +E + E+
Sbjct: 143 TKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESC 202
Query: 1190 LEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
+ K+M +T ++V ++ ++K+D I ++ G G+ +EL
Sbjct: 203 VCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 5e-22
Identities = 64/237 (27%), Positives = 123/237 (51%), Gaps = 26/237 (10%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
I ++NV +Y T +++L +SL I G +++G +G GKST++ ++ R G +
Sbjct: 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGK------ADARESEIKKAA 1121
+D ++ + K+L ++++ QE + + T+R+ + +G+ +E
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 1122 VLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD-- 1179
+ H + + D Y +LSGGQ+QR +A + ++ +LLDE + LD
Sbjct: 119 AIEYLH--LEDLSDRYLD-------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMK 169
Query: 1180 -SVS-ESLVQEALEKMMMGRTCVVVAHRLS-TIQKSDTIAVIKNGRVVEQGSHNELV 1233
SV +++ ++ +G+T VVV H ++ SD I +KNG+VV+QGS +E++
Sbjct: 170 HSVQIMKILRRLADE--LGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224
|
Length = 252 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 5e-22
Identities = 66/224 (29%), Positives = 114/224 (50%), Gaps = 15/224 (6%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRS 421
V+ G++L V G+ VGL+G +G+GK+TT ++ P G++LLDG I +L + R+
Sbjct: 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH-KRA 73
Query: 422 QMGL--VNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANA-HDF-ITKLPDGYETQ 476
++G+ + QE +F ++ ENIL + + K +F IT L
Sbjct: 74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRK----- 128
Query: 477 VGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTT 535
+SGG+++R+ IARAL +PK LLLDE + +D + + +Q+ I + +G
Sbjct: 129 --SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGV 186
Query: 536 LIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYY 578
LI H + T+ + ++ GKV+ G+ E+ + Y
Sbjct: 187 LITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKVY 230
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (240), Expect = 5e-22
Identities = 65/235 (27%), Positives = 113/235 (48%), Gaps = 31/235 (13%)
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDIRN 1077
D+ +K ++L ++ G AL+G SGCGK+T + + R +D + G + +D QDI
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75
Query: 1078 YNLK--QLRSHIALVSQEPTLFAG-TIRENIAYGK-----------ADARESEIKKAAVL 1123
+ +R + +V Q+P F ++ +N+ G + E ++ AA+
Sbjct: 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALW 135
Query: 1124 ANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183
+ + G LSGGQ+QR+ +ARA+ P ILL+DE TSALD S
Sbjct: 136 DEVKDRLKTPATG-----------LSGGQQQRLCIARALAVEPEILLMDEPTSALDPAST 184
Query: 1184 SLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVALSR 1237
+ +++ + + T ++V H + + SDT + G +VE G ++L R
Sbjct: 185 ARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPR 239
|
Length = 252 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 6e-22
Identities = 71/232 (30%), Positives = 121/232 (52%), Gaps = 18/232 (7%)
Query: 345 IEFRDVYFCYPS-RP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402
I ++V + Y + P + L +NL + G +G +GSGKST + LL + P +G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 403 EVLLDGYKIR----RLHLKWLRSQMGLVNQ--EPVLFATSITENILFGKD--GASMDDVI 454
V +D I +K +R ++GLV Q E LF ++ +++ FG G S ++
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 455 SAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSAL 514
+ A+ A I+ E+ + F++SGGQ +R+AIA L +PKIL+LDE T+ L
Sbjct: 123 ALAREKLALVGIS------ESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGL 176
Query: 515 DAQSERIVQEAIDKVSK-GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGS 564
D + + + K+ + G T +++ H + + A+ + VL+ GK+V SG
Sbjct: 177 DPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
Length = 280 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 6e-22
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 26/193 (13%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRN---YNLKQ 1082
+L ++L+I G+ V L G SG GK+T++ L+ +GS+ + Q++ L Q
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 1083 LRSHIALVSQEPTLFAG-TIRENIAYG-----KADARESEIKKAAVLANAHEFISGMKDG 1136
LR +I + Q L T R+N+ +E+ + A+L G+ D
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAV-----GLGDH 134
Query: 1137 YDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVS-----ESLVQEALE 1191
D Y LSGGQKQR+A+ARA++ P ++L DE T+ALDS S E + + A E
Sbjct: 135 LDYYPH----NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190
Query: 1192 KMMMGRTCVVVAH 1204
+ G T ++V H
Sbjct: 191 Q---GCTILIVTH 200
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (239), Expect = 7e-22
Identities = 65/212 (30%), Positives = 102/212 (48%), Gaps = 22/212 (10%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----P 399
I DV+ Y L+G++L + L+G SG GKST + L R D
Sbjct: 6 ITSSDVHLFYGKFE---ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT 62
Query: 400 VEGEVLLDGYKIR--RLHLKWLRSQMGLVNQEPVLFATSITENILFG------KDGASMD 451
+ G V L G I + LR Q+G+V Q+P F SI EN+++G KD A +D
Sbjct: 63 ITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLD 122
Query: 452 DVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEAT 511
+ + + A + D + + + +SGGQ+QR+ IAR L P ++LLDE T
Sbjct: 123 EAVETSLKQAA------IWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPT 176
Query: 512 SALDAQSERIVQEAIDKVSKGRTTLIIAHRLS 543
SALD S ++ + ++ T +++ H +
Sbjct: 177 SALDPISSTQIENMLLELRDQYTIILVTHSMH 208
|
Length = 252 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (247), Expect = 7e-22
Identities = 75/250 (30%), Positives = 133/250 (53%), Gaps = 16/250 (6%)
Query: 360 TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL 419
+L ++ +L + G+ ++G SGSGKST + LL R +P G+VL+DG I ++ L
Sbjct: 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAEL 100
Query: 420 RS----QMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYE 474
R ++ +V Q L ++ +N FG + A + + + A D + ++ G E
Sbjct: 101 REVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAG---INAEERREKALDALRQV--GLE 155
Query: 475 TQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKG-- 532
++SGG +QR+ +ARAL +P ILL+DEA SALD +Q+ + K+
Sbjct: 156 NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ 215
Query: 533 RTTLIIAHRL-STIRTANLIMVLKAGKVVESGSHNELMNRGEGG---EYYQMVELQQMAS 588
RT + I+H L +R + I +++ G+VV+ G+ +E++N +++ V++ Q+ S
Sbjct: 216 RTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFS 275
Query: 589 ENDTSNDTFN 598
D + T N
Sbjct: 276 AKDIARRTPN 285
|
Length = 400 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 8e-22
Identities = 69/240 (28%), Positives = 120/240 (50%), Gaps = 21/240 (8%)
Query: 1006 RGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD--- 1062
+IE++++ ++ +L G++L+I AL+G SG GKST++ + R +
Sbjct: 1 MNKIEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYP 57
Query: 1063 --PLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYG------KADAR 1113
+ G V++D QDI ++ +LR + +V Q P +I EN+A G +
Sbjct: 58 EARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKK 117
Query: 1114 ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDE 1173
E + + L A + +KD D G +LSGGQ+QR+ +ARA+ P +LL DE
Sbjct: 118 ELQERVRWALEKA-QLWDEVKDRLDAPAG----KLSGGQQQRLCIARALAFQPEVLLADE 172
Query: 1174 ATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
T+ LD + + ++ ++ T V+V H + SD +A + G++VE G E+
Sbjct: 173 PTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232
|
Length = 250 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 9e-22
Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 21/197 (10%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKIRR 413
L ++ + L +P + +G SG GKST + R D VEG+V G +
Sbjct: 22 SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81
Query: 414 LHLK--WLRSQMGLVNQEPVLFATSITENILFGK--DG--ASMDDVI--SAAKAANAHDF 465
+ +R ++G+V Q+P F SI +NI +G +G MD+++ S +AA
Sbjct: 82 PDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAA----- 136
Query: 466 ITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEA 525
L D + ++ Q G +SGGQ+QR+ IARA+ P+++L+DE SALD S ++E
Sbjct: 137 ---LWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEEL 193
Query: 526 IDKVSKGRTTLIIAHRL 542
+ ++ + T +I+ H +
Sbjct: 194 MHELKEQYTIIIVTHNM 210
|
Length = 264 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 1e-21
Identities = 76/244 (31%), Positives = 123/244 (50%), Gaps = 34/244 (13%)
Query: 345 IEFRDVYFCY-PSRP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRF---YDP 399
I+F +V + Y P P + L ++ + G V LVG +GSGKST L+Q F P
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKST---LMQHFNALLKP 59
Query: 400 VEGEVLLDGYKIR----RLHLKWLRSQMGLVNQ--EPVLFATSITENILFGKD--GASMD 451
G + + GY I +LK LR ++ LV Q E LF ++ +++ FG G S D
Sbjct: 60 SSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSED 119
Query: 452 DVISAA-----KAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILL 506
+ A K + D I+K P F++SGGQ +R+AIA + +P+IL
Sbjct: 120 EAKEKALKWLKKVGLSEDLISKSP-----------FELSGGQMRRVAIAGVMAYEPEILC 168
Query: 507 LDEATSALDAQS-ERIVQEAIDKVSKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGS 564
LDE + LD + + ++Q D G T +++ H + + A+ ++VL+ GK+++ S
Sbjct: 169 LDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHAS 228
Query: 565 HNEL 568
E+
Sbjct: 229 PKEI 232
|
Length = 287 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 1e-21
Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 13/210 (6%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
++L+NV + IL +S + AG+ + G SGCGKST++ ++ P G++
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHE 1128
+ +DI + R ++ +Q PTLF T+ +N+ + R + A L +
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIF-PWQIRNQQPDPAIFLDDLER 123
Query: 1129 FISGMKDGYDTYCGERGV-QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
F + + +LSGG+KQRI+L R + P +LLLDE TSALD ++ V
Sbjct: 124 F------ALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVN 177
Query: 1188 EALEKMMMGRTCVV--VAHRLSTIQKSDTI 1215
E + + + + V V H I +D +
Sbjct: 178 EIIHRYVREQNIAVLWVTHDKDEINHADKV 207
|
Length = 225 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 1e-21
Identities = 63/228 (27%), Positives = 116/228 (50%), Gaps = 5/228 (2%)
Query: 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
G++ +K++ Y T +L+ +S I G+ V L+G++G GKST++ R + +G
Sbjct: 1 GQMTVKDLTAKY-TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 58
Query: 1067 SVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENI-AYGKADARESEIKKAAVLAN 1125
+ +D + L++ R ++ Q+ +F+GT R+N+ YGK + EI K A
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKW--SDEEIWKVAEEVG 116
Query: 1126 AHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL 1185
I D + G LS G KQ + LAR++L ILLLDE ++ LD ++ +
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176
Query: 1186 VQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELV 1233
+++ L++ T ++ HR+ + + VI+ +V + S +L+
Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL 224
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-21
Identities = 66/213 (30%), Positives = 115/213 (53%), Gaps = 19/213 (8%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS 1085
+LK +S K+E G+ +A+ G +G GKS+++ ++ +P +G + +
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI-------------KHSG 487
Query: 1086 HIALVSQEPTLFAGTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDTYCGE 1143
I+ Q + GTI++NI +G + + R + + KA L E I+ + T GE
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQL---EEDIALFPEKDKTVLGE 544
Query: 1144 RGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEA-LEKMMMGRTCVVV 1202
G+ LSGGQ+ RI+LARA+ K+ + LLD + LD V+E + E+ L K+M +T ++V
Sbjct: 545 GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILV 604
Query: 1203 AHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235
+L ++K+D I ++ G G+ +EL A
Sbjct: 605 TSKLEHLKKADKILLLHEGVCYFYGTFSELQAK 637
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 2e-21
Identities = 73/245 (29%), Positives = 120/245 (48%), Gaps = 35/245 (14%)
Query: 1009 IELKNVFFAYP--TRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
I NV + Y T + + ++ + E GK A+VGQ+G GKST+I + P G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 1067 SVFMDEQDI----RNYNLKQLRSHIALVSQ--EPTLFAGTIRENIAYG----KADARESE 1116
+V +D+ I ++ ++ +R I +V Q E LF T+ I +G K + E
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDE-- 120
Query: 1117 IKKAAVLANAHEFISGMKDGYDTYCGERGV------QLSGGQKQRIALARAILKNPSILL 1170
V AH + M G+ R V Q+SGGQ ++IA+ + NP I++
Sbjct: 121 -----VKNYAHRLL--MDLGF-----SRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIV 168
Query: 1171 LDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227
LDE T+ LD S+ V L+ + +T ++V+H ++ + + +D + V+K G +V Q
Sbjct: 169 LDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQT 228
Query: 1228 SHNEL 1232
S EL
Sbjct: 229 SPKEL 233
|
Length = 286 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (236), Expect = 2e-21
Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 19/221 (8%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKI--RRLH 415
L+ +++++P L+G SG GKST I L R D +EG+V ++G I +
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 416 LKWLRSQMGLVNQEPVLFATSITENILFGK-----DGASMDDVISAAKAANAHDFITKLP 470
+ LR +G+V Q+P F SI +N+ +G + +D V+ A + A L
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAA------LW 141
Query: 471 DGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS 530
D ++ +SGGQ+QR+ IAR L PKI+L DE TSALD S +++ I +
Sbjct: 142 DETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK 201
Query: 531 KGRTTLIIAHRL-STIRTANLIMVLKAGKVVESGSHNELMN 570
K T +I+ H + R ++ G+++E G ++ +
Sbjct: 202 KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242
|
Length = 258 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (236), Expect = 2e-21
Identities = 74/231 (32%), Positives = 117/231 (50%), Gaps = 11/231 (4%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKIR- 412
D ++ +NL V G L+G SG GK+T + + R +D V G +LLDG I
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75
Query: 413 -RLHLKWLRSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAHDFITKLP 470
R+ +R ++G+V Q+P F T S+ +N++ G A + D + A L
Sbjct: 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALW 135
Query: 471 DGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS 530
D + ++ +SGGQ+QR+ IARAL +P+ILL+DE TSALD S +++ + +
Sbjct: 136 DEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK 195
Query: 531 KGRTTLIIAHRL-STIRTANLIMVLKAGKVVESGSHNELMN--RGEGGEYY 578
K T +I+ H + R ++ G +VE G ++L R E E Y
Sbjct: 196 KVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPRDERTEAY 246
|
Length = 252 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 2e-21
Identities = 69/239 (28%), Positives = 123/239 (51%), Gaps = 20/239 (8%)
Query: 1009 IELKNVFFAY-PTRPDQMI-LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
I+ +NV + Y P P + L +S ++E G VALVG +G GKST++ P G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 1067 SVFMDEQDIR----NYNLKQLRSHIALVSQ--EPTLFAGTIRENIAYGKAD--ARESEIK 1118
++ + I N NLK+LR ++LV Q E LF T+ +++ +G + E E K
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 1119 KAAVLANAHEFISGMKDGYDTYCGERG-VQLSGGQKQRIALARAILKNPSILLLDEATSA 1177
+ A+ +++ K G + +LSGGQ +R+A+A + P IL LDE +
Sbjct: 123 EKAL-----KWLK--KVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAG 175
Query: 1178 LDSVS-ESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
LD + ++Q + G T ++V H + + + +D + V+++G++++ S E+ +
Sbjct: 176 LDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234
|
Length = 287 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 2e-21
Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 13/206 (6%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
+ G+S ++ G+ L+G +G GK+T + +L +P G +D D+ + R
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDV-VKEPAEARRR 79
Query: 1087 IALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFIS--GMKDGYDTYCGE 1143
+ VS L+ T REN+ Y A +K + A E GM++
Sbjct: 80 LGFVSDSTGLYDRLTARENLEYF---AGLYGLKGDELTARLEELADRLGMEE----LLDR 132
Query: 1144 RGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVA 1203
R S G +Q++A+ARA++ +P +LLLDE T+ LD ++ ++E + ++ C++ +
Sbjct: 133 RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFS 192
Query: 1204 -HRLSTIQK-SDTIAVIKNGRVVEQG 1227
H + +++ D + V+ GRVV +G
Sbjct: 193 THIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 2e-21
Identities = 72/265 (27%), Positives = 111/265 (41%), Gaps = 26/265 (9%)
Query: 975 SNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKI 1034
S + R V + + + IELKNV + IL LS ++
Sbjct: 5 SESSRGVELPEPKEPKKRHPIEINEPL-------IELKNVSVRRNGKK---ILGDLSWQV 54
Query: 1035 EAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ-LRSHIALVS-- 1091
G+ A+VG +G GK+T++ LL + P G V + + LR I LVS
Sbjct: 55 NPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSE 114
Query: 1092 -QEPTLFAGTIRENIAYGKADA--RESEIKKAAVLANAHEFIS--GMKDGYDTYCGERGV 1146
E T+R+ + G + E A LA A + G K D G
Sbjct: 115 LHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG---- 170
Query: 1147 QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM---GRTCVVVA 1203
LS G+++R+ +ARA++K+P +L+LDE LD ++ + LE++ + V
Sbjct: 171 SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVT 230
Query: 1204 HRLSTIQKSDT-IAVIKNGRVVEQG 1227
H I T ++K G VV QG
Sbjct: 231 HHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 2e-21
Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 19/215 (8%)
Query: 1030 LSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDE---QDIR-NYNLKQLRS 1085
+ A+ G+SG GK+T+I L+ P +G + ++ D R L +
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 1086 HIALVSQEPTLFAG-TIRENIAYG--KADARESEIKKAAVLANAHEFISGMKDGYDTYCG 1142
I V QE LF ++R N+ YG +A E I V+ G G
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELL---------GIGHLLG 126
Query: 1143 ERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCV 1200
+LSGG+KQR+A+ RA+L +P +LL+DE +ALD + + LE++ G +
Sbjct: 127 RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPIL 186
Query: 1201 VVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
V+H L + + +D + V+++GRV G E+ A
Sbjct: 187 YVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 2e-21
Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 56/200 (28%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST---IIGLLERFYDPLK 1065
IEL+N+ A P +++LK LS +I+ G + + G SG GKS+ + L +
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---S 55
Query: 1066 GSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLAN 1125
G + M E + + Q P L GT+RE + Y D
Sbjct: 56 GRIGMPE-----------GEDLLFLPQRPYLPLGTLREQLIYPWDDV------------- 91
Query: 1126 AHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL 1185
LSGG++QR+A AR +L P + LDEATSALD SE
Sbjct: 92 ----------------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDR 129
Query: 1186 VQEALEKMMMGRTCVVVAHR 1205
+ + L+++ + T + V HR
Sbjct: 130 LYQLLKELGI--TVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (236), Expect = 2e-21
Identities = 73/226 (32%), Positives = 117/226 (51%), Gaps = 15/226 (6%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
I L+NV ++YP L+ ++L I+ G+ + ++G++G GKST+ L P KG V
Sbjct: 2 IRLENVSYSYPDGTPA--LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 1069 FMDEQDIRNYN-LKQLRSHIALVSQEP-TLFAG-TIRENIAYGKADA--RESEIKKAAVL 1123
+ D +++ L+ +R + +V Q P T F G T+ E++A+G + EI+K
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119
Query: 1124 ANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183
A A + G + Y LSGGQ Q +ALA + P L+ DE TS LD S
Sbjct: 120 ALA-------EIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG 172
Query: 1184 SLVQEALEKMM-MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGS 1228
V E ++K+ G+T V + H L + +D I V+ G++V +G
Sbjct: 173 IAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGE 218
|
Length = 274 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 2e-21
Identities = 72/238 (30%), Positives = 125/238 (52%), Gaps = 28/238 (11%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
I+FR+V Y D LV+ GL+ V G+ GL+G +G+GK+TT+ +L P G +
Sbjct: 8 IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 405 LLDGYKIRRLHLKWLRSQMGLV----NQEPVLFATSITENIL-----FGKDGASMDDVIS 455
L G + + R ++G+V N +P ++ EN+L FG A+
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAAA----- 115
Query: 456 AAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD 515
A +F KL + + +VG+L SGG K+R+ +ARAL+ DP +L+LDE T+ LD
Sbjct: 116 RALVPPLLEF-AKLENKADAKVGEL----SGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170
Query: 516 AQSERIVQEAIDKV-SKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNR 571
Q+ ++ E + + ++G+T L+ H + R + + V++ G+ + G+ + L+
Sbjct: 171 PQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228
|
Length = 306 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 3e-21
Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 37/229 (16%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG-----EVLLDGYK------ 410
VL G++L V G+ V ++G SGSGK+T + + P G ++ +D +
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 411 --IRRLHLKWLRSQMGLVNQEPVLFA-TSITENILFGK---DGASMDDVISAAKAANAHD 464
IR+L R +G V Q LF ++ ENI+ G G ++ + A+ A
Sbjct: 78 GLIRQL-----RQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKV 132
Query: 465 FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE 524
+ Y + +SGGQ+QR+AIARAL P+++L DE TSALD + +V E
Sbjct: 133 GLAGKETSYPRR-------LSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVGE 182
Query: 525 AIDKV----SKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNEL 568
++ + + RT +I+ H +S R A+ + + G++VE G L
Sbjct: 183 VLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231
|
Length = 250 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 93.5 bits (232), Expect = 3e-21
Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 12/209 (5%)
Query: 358 PDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVL----LDGYKIRR 413
L +N+R+P G+ +VG G GKS+ + + +EG+V +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 414 LHLKWLRSQMGLVNQEPVLFATSITENILFGK--DGASMDDVISAAKAANAHDFITKLPD 471
R + Q+P L ++ ENI FG + V A D LP
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDL---LPF 128
Query: 472 GYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ-SERIVQEAIDKVS 530
G +T++G+ G +SGGQ+QRI +ARAL ++ I+ LD+ SALD S+ ++QE I K
Sbjct: 129 GDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL 188
Query: 531 KG--RTTLIIAHRLSTIRTANLIMVLKAG 557
+ RT +++ H+L + A+ I+ +K G
Sbjct: 189 QDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 3e-21
Identities = 67/224 (29%), Positives = 110/224 (49%), Gaps = 20/224 (8%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKI-- 411
D L +N+++ L+G SG GKST + L R D +EG V+ +G I
Sbjct: 19 DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78
Query: 412 RRLHLKWLRSQMGLVNQEPVLFATSITENILFG------KDGASMDDVISAAKAANAHDF 465
+ LR ++G+V Q P F SI +NI +G KD +D+++ + +A
Sbjct: 79 NNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSA--- 135
Query: 466 ITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEA 525
L + + ++ +SGGQ+QR+ IAR L +P ++L+DE TSALD S ++E
Sbjct: 136 ---LWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL 192
Query: 526 IDKVSKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNEL 568
I + + T +I+ H + R ++ G + E S +EL
Sbjct: 193 IINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236
|
Length = 254 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 3e-21
Identities = 59/208 (28%), Positives = 106/208 (50%), Gaps = 13/208 (6%)
Query: 361 LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLR 420
+ G++ V G+ GL+G +G+GK+TT+ +L +P G +DG+ + + + R
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAE-AR 77
Query: 421 SQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDFITKLPD--GYETQV 477
++G V+ L+ + EN+ + + K + +L D G E +
Sbjct: 78 RRLGFVSDSTGLYDRLTARENLEYFAG-------LYGLKGDELTARLEELADRLGMEELL 130
Query: 478 GQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV-SKGRTTL 536
+ S G +Q++AIARAL+ DP +LLLDE T+ LD + R ++E I ++ + G+ L
Sbjct: 131 DRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCIL 190
Query: 537 IIAHRLSTI-RTANLIMVLKAGKVVESG 563
H + + R + ++VL G+VV G
Sbjct: 191 FSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (236), Expect = 3e-21
Identities = 64/218 (29%), Positives = 110/218 (50%), Gaps = 7/218 (3%)
Query: 1024 QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG-----SVFMDEQDIRNY 1078
+ +L +S+ A +L+G +G GK+T + L R D + G V + + I NY
Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93
Query: 1079 -NLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGY 1137
++ + R + ++ Q P F +I +N+ G + K+ +A A G+ D
Sbjct: 94 RDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV 153
Query: 1138 DTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGR 1197
+ +LSGGQ+Q + LAR + NP +LLLDE TSALD + ++E + +
Sbjct: 154 KDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRL 213
Query: 1198 TCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
T ++V H L+ + SD A+ +GR+VE+G +L +
Sbjct: 214 TVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251
|
Length = 276 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 3e-21
Identities = 64/213 (30%), Positives = 108/213 (50%), Gaps = 19/213 (8%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRS 421
L GL+L + G V ++G +G+GKST + + P G++L+DG + + R+
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKS-VAKRA 79
Query: 422 QM-GLVNQEPVL-FATSIT--ENILFGKDGASMDDVISAAKAANAHDF---ITKLPDGYE 474
+ V Q+P+ A +T EN+ + + SA F + +L G E
Sbjct: 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE 139
Query: 475 ----TQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDK-V 529
++G L SGGQ+Q +++ A + PKILLLDE T+ALD ++ V E K V
Sbjct: 140 NRLSDRIGLL----SGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIV 195
Query: 530 SKGR-TTLIIAHRL-STIRTANLIMVLKAGKVV 560
+ + TTL++ H + + N +++L +GK+V
Sbjct: 196 EEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 3e-21
Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 31/226 (13%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDI--RNYN 1079
+K +S+ A++G SGCGKST++ + R +D + G + +D+ DI R +
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 1080 LKQLRSHIALVSQEPTLF-AGTIRENIAYG--------KADAR---ESEIKKAAVLANAH 1127
+R + +V Q+P F A +I +N+ G +++A ES +K+ A+
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK 139
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
+ + ++LSGGQ+QR+ +AR I P ++L+DE SALD +S ++
Sbjct: 140 DRLKS-----------NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIE 188
Query: 1188 EALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
E +E++ T ++V H + + SD A G +VE G ++
Sbjct: 189 ELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234
|
Length = 252 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 3e-21
Identities = 73/227 (32%), Positives = 123/227 (54%), Gaps = 12/227 (5%)
Query: 1005 MRGRIELKNVFFAYPTRPDQM-ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP 1063
M +ELK++ +YP+ +Q+ +LKG+SL I AG+ VA+VG SG GKST++ +L P
Sbjct: 1 MTALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP 60
Query: 1064 LKGSVFMDEQDIRNYN---LKQLR-SHIALVSQEPTLFAG-TIRENIAYGKADARESEIK 1118
G+ + QD+ + L QLR H + Q L + T +N+ + A + ++
Sbjct: 61 TSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNV---EVPAVYAGLE 117
Query: 1119 KAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSAL 1178
+ L A E + + G + + QLSGGQ+QR+++ARA++ ++L DE T AL
Sbjct: 118 RKQRLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGAL 175
Query: 1179 DSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQKSDTIAVIKNGRVV 1224
DS S V L ++ G T ++V H +++ + I++G +V
Sbjct: 176 DSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 4e-21
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 24/210 (11%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRS 421
VL ++L V G+ G +G +G+GK+TT+ ++ P GE+ DG ++
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL--R 72
Query: 422 QMGLVNQEPVLFAT-SITENI-----LFGKDGASMDDVISAAKAANAHDFITKLPDGYET 475
++G + + P + + EN+ L G +D+V+ ++ K
Sbjct: 73 RIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVK------- 125
Query: 476 QVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAI-DKVSKGRT 534
S G KQR+ IA AL+ +P +L+LDE T+ LD + ++E I +G T
Sbjct: 126 -------GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 535 TLIIAHRLSTI-RTANLIMVLKAGKVVESG 563
LI +H LS I + A+ I ++ GK++E G
Sbjct: 179 VLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 5e-21
Identities = 70/218 (32%), Positives = 113/218 (51%), Gaps = 31/218 (14%)
Query: 1031 SLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALV 1090
L +E G+ VA++G SG GKST++ L+ F P GS+ ++ QD + R ++++
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSR-RP-VSML 76
Query: 1091 SQEPTLFAG-TIRENIAYGKADA-RESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQL 1148
QE LF+ T+ +NI G + + ++ + A A + G + QL
Sbjct: 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQM------GIEDLLARLPGQL 130
Query: 1149 SGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEAL--------EKMMMGRTCV 1200
SGGQ+QR+ALAR +++ ILLLDE SALD +L QE L E+ + T +
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALDP---ALRQEMLTLVSQVCQERQL---TLL 184
Query: 1201 VVAHRLSTIQKSDTIA----VIKNGRVVEQGSHNELVA 1234
+V+H L + IA V+ +GR+ G +EL++
Sbjct: 185 MVSHSLEDAAR---IAPRSLVVADGRIAWDGPTDELLS 219
|
Length = 232 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 6e-21
Identities = 60/198 (30%), Positives = 104/198 (52%), Gaps = 21/198 (10%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV-----EGEVLLDGYKI-- 411
+ L+ +NL + + ++G SG GKST I L R + V G++L I
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95
Query: 412 RRLHLKWLRSQMGLVNQEPVLFATSITENILFG------KDGASMDDVISAA-KAANAHD 464
+ ++ LR+ +G+V Q+P F SI +N+ +G KD ++D+++ + + A D
Sbjct: 96 KSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD 155
Query: 465 FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE 524
+L D + +SGGQ+QR+ IAR L +P ++L+DE TSALD S V+E
Sbjct: 156 ---ELKDRLHDN----AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEE 208
Query: 525 AIDKVSKGRTTLIIAHRL 542
+ ++ K + +I+ H +
Sbjct: 209 LVQELKKDYSIIIVTHNM 226
|
Length = 271 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 6e-21
Identities = 64/207 (30%), Positives = 102/207 (49%), Gaps = 12/207 (5%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH---LKW 418
+L+G+ L V G++V +VG SGSGKST +A+L DP GEV L G + +L
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 419 LRSQ-MGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQ 476
LR++ +G V Q L + EN+ + SA A A + + G +
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVAL---PLELRGESSADSRAGAKALLEAV--GLGKR 139
Query: 477 VGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS-ERIVQEAIDKVSKGRTT 535
+ Q+SGG++QR+A+ARA P +L DE T LD + ++I + TT
Sbjct: 140 LTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTT 199
Query: 536 LI-IAHRLSTIRTANLIMVLKAGKVVE 561
L+ + H + + L++G++VE
Sbjct: 200 LVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 6e-21
Identities = 63/215 (29%), Positives = 110/215 (51%), Gaps = 15/215 (6%)
Query: 366 LNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKI----RRLHLKWLRS 421
+ +P + G SGSGK+T I L+ P EGE++L+G + + + L +
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 422 QMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQL 480
++G V QE LF S+ N+ +G M + + + I L G +G+L
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYG-----MKRARPSERRISFERVIELL--GIGHLLGRL 128
Query: 481 GFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLII 538
++SGG+KQR+AI RAL+ P++LL+DE +ALD + + ++++ G L +
Sbjct: 129 PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYV 188
Query: 539 AHRLSTI-RTANLIMVLKAGKVVESGSHNELMNRG 572
+H L + R A+ ++VL+ G+V +G E+
Sbjct: 189 SHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 6e-21
Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 21/216 (9%)
Query: 993 PDSPQGR-DIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKS 1051
P R D I L+N+ T Q +L L+ ++ G+ + + G+SG GK+
Sbjct: 376 PARTGRRIDFDDNADHGITLENLSLR--TPDGQTLLSELNFEVRPGERLLITGESGAGKT 433
Query: 1052 TIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKAD 1111
+++ L + G + M S + + Q P L GT+RE + Y A
Sbjct: 434 SLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTLREALCYPNAA 482
Query: 1112 ARESEIKKAAVLANAH--EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSIL 1169
S+ + AVL + + D D + LSGG++QR+A AR +L P +
Sbjct: 483 PDFSDAELVAVLHKVGLGDLAERL-DEEDRWDRV----LSGGEQQRLAFARLLLHKPKWV 537
Query: 1170 LLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHR 1205
LDEATSALD +E + + L++ + T + V HR
Sbjct: 538 FLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 6e-21
Identities = 66/225 (29%), Positives = 110/225 (48%), Gaps = 30/225 (13%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL-----KGSVFMDEQDI--RNYN 1079
+K ++ I + A++G SGCGKST + + R D + G++ D +DI + +
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114
Query: 1080 LKQLRSHIALVSQEPTLFAGTIRENIAYGK-----------ADARESEIKKAAVLANAHE 1128
LR I +V Q+P F +I +NIAYG + E ++KAA+
Sbjct: 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDE--- 171
Query: 1129 FISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQE 1188
+ D D + + LSGGQ+QR+ +AR + P ILLLDE TSALD + + +++
Sbjct: 172 ----VSDRLD----KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIED 223
Query: 1189 ALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
++++ T ++V H + + SD G +VE +L
Sbjct: 224 LIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268
|
Length = 286 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 6e-21
Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 29/244 (11%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP---VE 401
+EF+ V F YP L ++ +P G L+G +GSGKST L+ P
Sbjct: 6 VEFKHVSFTYPDSKKP-ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 402 GEVLLDGYKIRRLHLKWLRSQMGLVNQEP--VLFATSITENILFGKD--GASMDDVISAA 457
++ +DG + + +R ++G+V Q P ++ +++ FG + ++I
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 458 KAANAHDFITKLPDGYETQVGQLGFQ------MSGGQKQRIAIARALIRDPKILLLDEAT 511
+ A VG L + +SGGQKQR+AIA L +PKI++LDE+T
Sbjct: 125 RDVLA-------------DVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDEST 171
Query: 512 SALDAQSERIVQEAIDKV--SKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELM 569
S LD + + + I K+ T + I H + A+ ++VL GK++ GS E+
Sbjct: 172 SMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231
Query: 570 NRGE 573
++ E
Sbjct: 232 SKVE 235
|
Length = 282 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 6e-21
Identities = 60/221 (27%), Positives = 107/221 (48%), Gaps = 18/221 (8%)
Query: 361 LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLR 420
L++ G+++ P G GL+G +GSGKST + LL P G V L G + L +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74
Query: 421 SQMGLVNQE-PVLFATSITENILFGKD------GASMDDVISAAKAANAHDFITKLPD-G 472
++ LV Q+ ++ + + G+ + A A ++ L D
Sbjct: 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD 134
Query: 473 YETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKG 532
T +SGG++QR+ +ARAL ++PK+LLLDE T+ LD +++ + +++
Sbjct: 135 MST--------LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT 186
Query: 533 RTTLIIA-HRLS-TIRTANLIMVLKAGKVVESGSHNELMNR 571
T++ A H L+ + ++VL G+VV +G E++
Sbjct: 187 GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTP 227
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 8e-21
Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 28/224 (12%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKI--RRLH 415
L+ +NL +P + ++G SG GKST I L + GE+ +G I ++
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 416 LKWLRSQMGLVNQEPVLFATSITENILFG------KDGASMDDVISAAKAANAHDFITKL 469
L LR +G+V Q+ F SI +N+ +G K+ + +++ + A L
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVA------L 141
Query: 470 PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV 529
D + ++ +SGGQ+QR+ IARAL +P +LL+DE TSALD S R ++E I K+
Sbjct: 142 WDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL 201
Query: 530 SKGRTTLIIAHRLS-----TIRTANLIMVLKAGKVVESGSHNEL 568
+ T +I+ H + + +TA M G++VE N++
Sbjct: 202 KEKYTIVIVTHNMQQAARVSDQTAFFYM----GELVECNDTNKM 241
|
Length = 259 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 8e-21
Identities = 72/237 (30%), Positives = 116/237 (48%), Gaps = 29/237 (12%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----P 399
IE ++ Y S V++G++L++P L+G SG GKST + R +
Sbjct: 5 IETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEAR 61
Query: 400 VEGEVLLDGYKIRRLHLKWL--RSQMGLVNQEPVLFA-TSITENILFG-------KDGAS 449
VEGEV L G I + + R ++G+V Q P F +I +N+ G K
Sbjct: 62 VEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE 121
Query: 450 MDDVISAA--KAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLL 507
+D+ + A KAA L D + ++ +SGGQ+QR+ IARAL PKILL+
Sbjct: 122 LDERVEWALKKAA--------LWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLM 173
Query: 508 DEATSALDAQSERIVQEAIDKVSKGRTTLIIAHR-LSTIRTANLIMVLKAGKVVESG 563
DE T+ +D ++E + ++ K T +++ H R ++ + L GK++E G
Sbjct: 174 DEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 8e-21
Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 22/203 (10%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS 1085
+L L L I AG+ VA+VG+SGCGKST++ LL P G + L + R
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG-----TAPLAEARE 81
Query: 1086 HIALVSQEPTLFA-GTIRENIAYG-KADARESEIKKAAVLANAHEFISGMKDGYDTYCGE 1143
L+ Q+ L + +N+ G K R+ A + ++ + G E
Sbjct: 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRD----------AALQALAAV--GLADRANE 129
Query: 1144 RGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVV 1201
LSGGQKQR+ALARA++ P +LLLDE ALD+++ +Q+ +E + G T ++
Sbjct: 130 WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLL 189
Query: 1202 VAHRLS-TIQKSDTIAVIKNGRV 1223
V H +S + +D + +I+ G++
Sbjct: 190 VTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 9e-21
Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 18/210 (8%)
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ 1082
+ +L +SL ++ G+ +G +G GK+T + ++ P G + D + + +
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIE 69
Query: 1083 LRSHIALVSQEPTLFAG-TIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDT 1139
I + + P + T REN+ R+ I + VL + G+KD
Sbjct: 70 ALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDE--VLD-----VVGLKD---- 118
Query: 1140 YCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRT 1198
++ S G KQR+ +A A+L NP +L+LDE T+ LD ++E + + G T
Sbjct: 119 SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 1199 CVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227
++ +H LS IQK +D I +I G+++E+G
Sbjct: 179 VLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 9e-21
Identities = 66/226 (29%), Positives = 115/226 (50%), Gaps = 38/226 (16%)
Query: 1025 MILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPLKGSVFMDEQDIRNYNL 1080
IL+G+SL++ G+ ++G++G GK+T ++GLL GS+ +D +DI
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL----PVKSGSIRLDGEDI----- 64
Query: 1081 KQLRSH------IALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGM 1133
+L H IA V Q +F T+ EN+ G A + + +E +
Sbjct: 65 TKLPPHERARAGIAYVPQGREIFPRLTVEENLLTG-LAALPR--RSRKIPDEIYELFPVL 121
Query: 1134 KDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKM 1193
K+ G RG LSGGQ+Q++A+ARA++ P +LLLDE T + + S++++ + ++
Sbjct: 122 KE----MLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT---EGIQPSIIKD-IGRV 173
Query: 1194 MM------GRTCVVVAHRLS-TIQKSDTIAVIKNGRVVEQGSHNEL 1232
+ G ++V L + +D V++ GRVV G+ +EL
Sbjct: 174 IRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 1e-20
Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 13/218 (5%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW 418
L+ ++L V G+ V L+G SG GK+T + ++ G + G I RL +
Sbjct: 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ- 74
Query: 419 LRSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQV 477
+ G+V Q LF ++ +NI +G M A + A D + LP
Sbjct: 75 -KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-GLPGSERKYP 132
Query: 478 GQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ-SERIVQEAIDKVSK--GRT 534
GQL SGGQ+QR+A+ARAL P +LLLDE SALDA+ E + E I ++ + G T
Sbjct: 133 GQL----SGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE-IRQLQRRLGVT 187
Query: 535 TLIIAH-RLSTIRTANLIMVLKAGKVVESGSHNELMNR 571
T+++ H + + A+ I+V+ G + + G+ E+
Sbjct: 188 TIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 1e-20
Identities = 48/209 (22%), Positives = 104/209 (49%), Gaps = 14/209 (6%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW 418
L ++ V G+ GL+G +G+GK+TTI ++ P GEVL DG +
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA--- 68
Query: 419 LRSQMGLVNQEPVLF-ATSITENILFGKDGASMDDVISAAKAANAHDFITKLP-DGYETQ 476
R+++G + +E L+ + + +++ A + + +++ +L Y +
Sbjct: 69 -RNRIGYLPEERGLYPKMKVIDQLVY---LAQLKGLKKEEARRRIDEWLERLELSEYANK 124
Query: 477 VGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV-SKGRTT 535
+ ++S G +Q++ A+I DP++L+LDE S LD + ++++ I ++ G+T
Sbjct: 125 RVE---ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTV 181
Query: 536 LIIAHRLSTI-RTANLIMVLKAGKVVESG 563
++ H++ + + +++L G+ V G
Sbjct: 182 ILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 2e-20
Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 14/214 (6%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP--VEGEVLLDGYKIRRLHLKWL 419
VL L+L + AG+ + L+G SG GK+T + + F + G + + + H
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLT--HAPPH 77
Query: 420 RSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVG 478
+ + L+ Q LF + +N+ FG M A + A+A + G
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLV-----GLGDAAA 132
Query: 479 QLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK---GRTT 535
L Q+SGG +QRIAIARA+ +P +LLLDE SALDA ++E I + + T
Sbjct: 133 HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTI 192
Query: 536 LIIAH-RLSTIRTANLIMVLKAGKVVESGSHNEL 568
L + H + + A+ ++K G++ G L
Sbjct: 193 LCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.4 bits (229), Expect = 2e-20
Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 28/231 (12%)
Query: 361 LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV-----EGEVLLDGYKI--RR 413
+ ++ ++ + + G +G SG GKST + L R D V EG V G + +
Sbjct: 22 MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG 81
Query: 414 LHLKWLRSQMGLVNQEPVLFATSITENILFG-----KDGASMDDVISAAKAANAHDFITK 468
+ +R +G+V Q+P F+ SI +N+ FG G D V A + A
Sbjct: 82 VDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGA-------A 134
Query: 469 LPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDK 528
L D + ++ G +SGGQ+QR+ IARA+ +P++LLLDE SALD + R V+E + +
Sbjct: 135 LWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVE 194
Query: 529 VSKGRTTLIIAHRL-STIRTANLIMVL--------KAGKVVESGSHNELMN 570
+ K T ++ H + IR A+ + G +VE G ++
Sbjct: 195 LKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQ 245
|
Length = 261 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.7 bits (230), Expect = 2e-20
Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 23/230 (10%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
I +V + YP T L+ +NL + G+ +G++G +GSGKST L P +G+V
Sbjct: 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 405 LLDGYKIRRL-HLKWLRSQMGLVNQEP--VLFATSITENILFGKDGASMDDVISAAKAAN 461
L+ G L+ +R +G+V Q P ++ E++ FG + + +
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIE------- 112
Query: 462 AHDFITKLPDGYETQVGQLGFQ------MSGGQKQRIAIARALIRDPKILLLDEATSALD 515
I K D ++G ++ +SGGQ Q +A+A L +P+ L+ DE TS LD
Sbjct: 113 ----IRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLD 168
Query: 516 AQSERIVQEAIDKV-SKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGS 564
S V E I K+ KG+T + I H L + A+ I+V+ GK+V G
Sbjct: 169 PDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGE 218
|
Length = 274 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (230), Expect = 2e-20
Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 7/227 (3%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG-----EVLLDGYKIRRLH- 415
VL +++ PA L+G +GSGK+T + L R D V G +VLL G I
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 416 LKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYET 475
+ R ++G++ Q P F SI +N+L G + A A L D +
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD 155
Query: 476 QVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTT 535
++ F++SGGQ+Q + +AR L +P++LLLDE TSALD + ++E I ++ T
Sbjct: 156 RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTV 215
Query: 536 LIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMV 581
+I+ H L+ R ++ + G++VE G +L + + E + V
Sbjct: 216 IIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETARYV 262
|
Length = 276 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 2e-20
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 48/230 (20%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTT-IALLQRFYDPVEGEVLLDGYKIRRLHLKWL- 419
V++ ++ + G+++GLVG SGSGKSTT +ALL+ +GE+ DG + L+ + L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI--NSQGEIWFDGQPLHNLNRRQLL 358
Query: 420 --RSQMGLVNQE------PVLFATSITENIL-----FGKDGASMDDVISAAK-----AAN 461
R ++ +V Q+ P L I E L VI+ +
Sbjct: 359 PVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPET 418
Query: 462 AHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERI 521
H + + SGGQ+QRIAIARALI P +++LDE TS+LD +
Sbjct: 419 RHRYPA---------------EFSGGQRQRIAIARALILKPSLIILDEPTSSLD----KT 459
Query: 522 VQEAIDKVSKGRTT------LIIAHRLSTIRT-ANLIMVLKAGKVVESGS 564
VQ I + K L I+H L +R + ++VL+ G+VVE G
Sbjct: 460 VQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGD 509
|
Length = 529 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 2e-20
Identities = 60/217 (27%), Positives = 106/217 (48%), Gaps = 25/217 (11%)
Query: 366 LNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKI----RRLHLKWLRS 421
N +PA L G SGSGK++ I ++ P EG + L+G + + + L +
Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76
Query: 422 QMGLVNQEPVLFA-TSITENILFGK---DGASMDDVISAAKAANAHDFITKLPDGYETQV 477
++G V Q+ LF ++ N+ +G A D +++ G E +
Sbjct: 77 RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALL--------------GIEHLL 122
Query: 478 GQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLI 537
+ +SGG+KQR+AI RAL+ P++LL+DE ++LD +R + ++++ I
Sbjct: 123 DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPI 182
Query: 538 I--AHRLSTI-RTANLIMVLKAGKVVESGSHNELMNR 571
+ +H L + R A+ ++VL+ GKV SG E+
Sbjct: 183 LYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219
|
Length = 352 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 3e-20
Identities = 62/201 (30%), Positives = 101/201 (50%), Gaps = 23/201 (11%)
Query: 378 LVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFA-TS 436
L+G SG GK+T + LL F P G ++LDG + ++ + +V Q LF +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV--TNVPPHLRHINMVFQSYALFPHMT 58
Query: 437 ITENILFG----KDGASMDD--VISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQ 490
+ EN+ FG K + V+ A + +F + P Q+SGGQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPH-----------QLSGGQQQ 107
Query: 491 RIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT- 547
R+A+ARAL+ PKILLLDE SALD + +Q + + + G T + + H T
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 548 ANLIMVLKAGKVVESGSHNEL 568
++ I +++ GK+ + G+ E+
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 3e-20
Identities = 59/232 (25%), Positives = 101/232 (43%), Gaps = 34/232 (14%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+ + F Y +P L G+ +VG SGSGKST + L+ F P G V
Sbjct: 1 VRLDKIRFSYGEQPMHFDLT-----FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFA-TSITENILFG---------KDGASMDDVI 454
L++G + + ++ QE LFA ++ +N+ G +D +++
Sbjct: 56 LINGVDVT--AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIE--- 110
Query: 455 SAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSAL 514
A +LP ++SGG++QR+A+AR L+RD +LLLDE +AL
Sbjct: 111 VALARVGLAGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAAL 159
Query: 515 DAQSERIVQEAIDKV--SKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESG 563
D + + + + T L++ H+ R A ++ L G++ G
Sbjct: 160 DPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 3e-20
Identities = 66/195 (33%), Positives = 101/195 (51%), Gaps = 21/195 (10%)
Query: 361 LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKI--RR 413
L L ++L++PA K + +G SG GKST + R D VEG +L I +
Sbjct: 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93
Query: 414 LHLKWLRSQMGLVNQEPVLFATSITENILFGKDG----ASMDDVI--SAAKAANAHDFIT 467
++ LR Q+G+V Q P F SI ENI F ++D+++ S +AA +
Sbjct: 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD 153
Query: 468 KLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAID 527
KL + G +SGGQ+QR+ IARA+ P +LL+DE SALD S R V+E
Sbjct: 154 KLKEK--------GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL 205
Query: 528 KVSKGRTTLIIAHRL 542
++ + T +++ H +
Sbjct: 206 ELKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 4e-20
Identities = 63/222 (28%), Positives = 108/222 (48%), Gaps = 24/222 (10%)
Query: 366 LNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV-----EGEVLLDGYKI--RRLHLKW 418
+++ + L+G SG GKST + + R D + EGE+L +G I +++
Sbjct: 40 ISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN 99
Query: 419 LRSQMGLVNQEPVLFATSITENILFG------KDGASMDDVI--SAAKAANAHDFITKLP 470
LR ++G+V Q+P F SI NI + + +D+++ S KAA L
Sbjct: 100 LRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAA--------LW 151
Query: 471 DGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS 530
D + ++ +SGGQ+QR+ IAR L P +LLLDE SALD S ++E I ++
Sbjct: 152 DEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK 211
Query: 531 KGRTTLIIAHRL-STIRTANLIMVLKAGKVVESGSHNELMNR 571
+ + +I+ H + +R ++ G +VE ++
Sbjct: 212 EEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253
|
Length = 268 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 5e-20
Identities = 72/238 (30%), Positives = 123/238 (51%), Gaps = 32/238 (13%)
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKS----TIIGLL-ERFYDPLKGSVFMDEQDIRN 1077
+KG+S IEAG+T+ALVG+SG GKS +I+GLL GS+ D +D+
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81
Query: 1078 YNLKQLR----SHIALVSQEP--------TL---FAGTIRENIAYGKADARESEIKKAAV 1122
+ +QLR + I ++ QEP T+ A +R + +A AR ++ +
Sbjct: 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALE---L 138
Query: 1123 LANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVS 1182
L I + D Y +LSGGQ+QR+ +A A+ P +L+ DE T+ALD
Sbjct: 139 LELVG--IPEPEKRLDAY----PHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTV 192
Query: 1183 ESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVALSR 1237
++ + + L+++ +G + + H L ++K +D + V+++G +VE G+ L A +
Sbjct: 193 QAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQ 250
|
Length = 534 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 5e-20
Identities = 70/202 (34%), Positives = 102/202 (50%), Gaps = 20/202 (9%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRS 421
VL L+L +PAG+ V +VG SG GKST + LL P GE LL G L R
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE-LLAG----TAPLAEARE 81
Query: 422 QMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQL 480
L+ Q+ L + +N+ G G D + A A D + P
Sbjct: 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAA-------- 133
Query: 481 GFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV--SKGRTTLII 538
+SGGQKQR+A+ARALI P +LLLDE ALDA + +Q+ I+ + G T L++
Sbjct: 134 ---LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLV 190
Query: 539 AHRLS-TIRTANLIMVLKAGKV 559
H +S + A+ +++++ GK+
Sbjct: 191 THDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 5e-20
Identities = 50/205 (24%), Positives = 98/205 (47%), Gaps = 12/205 (5%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS 1085
L +S +E G+ L+G +G GK+T I ++ P G V D + + R+
Sbjct: 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD----IAARN 70
Query: 1086 HIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGER 1144
I + +E L+ + + + Y A+ +KK E++ + Y +R
Sbjct: 71 RIGYLPEERGLYPKMKVIDQLVYL---AQLKGLKKEEARRRIDEWLE--RLELSEYANKR 125
Query: 1145 GVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEAL-EKMMMGRTCVVVA 1203
+LS G +Q++ A++ +P +L+LDE S LD V+ L+++ + E G+T ++
Sbjct: 126 VEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILST 185
Query: 1204 HRLSTIQK-SDTIAVIKNGRVVEQG 1227
H++ +++ D + ++ GR V G
Sbjct: 186 HQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 5e-20
Identities = 66/246 (26%), Positives = 123/246 (50%), Gaps = 34/246 (13%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERF 1060
+ +N+ +Y R ++ +SL++ +G+ V L+G +G GK+T I+GL+
Sbjct: 1 DMSTLVAENLAKSYKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR-- 55
Query: 1061 YDPLKGSVFMDEQDIRNYNL-KQLRSHIALVSQEPTLFAG-TIRENIA------YGKADA 1112
P G + +D++DI + K+ R I + QE ++F T+ +NI
Sbjct: 56 --PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKK 113
Query: 1113 RESEIKKAAVLANAHEF-ISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLL 1171
E + + A+L EF I+ ++D + LSGG+++R+ +ARA+ NP +LL
Sbjct: 114 AERKEELDALL---EEFHITHLRD-------SKAYSLSGGERRRVEIARALAANPKFILL 163
Query: 1172 DEATSALDSVSESLVQEALEKMMMGRTCVVVA--HRL-STIQKSDTIAVIKNGRVVEQGS 1228
DE + +D ++ +Q + K + R V+ H + T+ D +I +G+V+ +GS
Sbjct: 164 DEPFAGVDPIAVIDIQR-IIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGS 222
Query: 1229 HNELVA 1234
E+V
Sbjct: 223 PEEIVN 228
|
Length = 243 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 6e-20
Identities = 57/196 (29%), Positives = 88/196 (44%), Gaps = 39/196 (19%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
I L+N+ AY RP +L+ +SL + G+ + LVG++G GKST++ +L +P G V
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAH 1127
K LR + +SQEP L T+ + + G + RE + A
Sbjct: 61 TRP---------KGLR--VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 1128 EFISGMKDGYDTYCGERGV------------------------QLSGGQKQRIALARAIL 1163
+ + + E LSGG ++R+ALARA+L
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 1164 KNPSILLLDEATSALD 1179
+ P +LLLDE T+ LD
Sbjct: 170 EEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 7e-20
Identities = 69/244 (28%), Positives = 118/244 (48%), Gaps = 29/244 (11%)
Query: 1009 IELKNVFFAY-PTRP-DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
I + V Y P ++ L +++ I +G VA++G +G GKST++ L P G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 1067 SVFMDEQDI----RNYNLKQLRSHIALVSQ--EPTLFAGTIRENIAYG-------KADAR 1113
+V + E+ I +N LK LR + +V Q E LF T+ ++I +G + DA+
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAK 122
Query: 1114 ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDE 1173
+ + ++ E ++ + ++ LSGGQ +R+A+A + P +L+LDE
Sbjct: 123 QKAREMIELVGLPEELLA--RSPFE---------LSGGQMRRVAIAGVLAMEPEVLVLDE 171
Query: 1174 ATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTI-QKSDTIAVIKNGRVVEQGSHN 1230
T+ LD + E K+ G T V+V H + + +D I V+ G V QG+
Sbjct: 172 PTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231
Query: 1231 ELVA 1234
E+ A
Sbjct: 232 EIFA 235
|
Length = 290 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.4 bits (224), Expect = 7e-20
Identities = 67/231 (29%), Positives = 123/231 (53%), Gaps = 31/231 (13%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIR--------- 412
VL+G++L+ AG + ++G SGSGKST + + P EG ++++G I
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 413 ----RLHLKWLRSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKA---ANAHD 464
+ L+ LR+++ +V Q L++ ++ EN++ + V+ +K A
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM-----EAPIQVLGLSKQEARERAVK 134
Query: 465 FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD----AQSER 520
++ K+ E G+ +SGGQ+QR++IARAL +P++LL DE TSALD + R
Sbjct: 135 YLAKVGID-ERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR 193
Query: 521 IVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570
I+Q+ + +G+T +++ H + R ++ ++ L GK+ E G+ +L
Sbjct: 194 IMQQLAE---EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG 241
|
Length = 257 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 7e-20
Identities = 71/235 (30%), Positives = 114/235 (48%), Gaps = 21/235 (8%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP---LK 1065
+E K+V F YP + L +S I G AL+G +G GKSTI L+ P
Sbjct: 6 VEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 1066 GSVFMDEQDIRNYNLKQLRSHIALVSQEP-TLFAG-TIRENIAYG---KADARESEIKKA 1120
+ +D + + +R + +V Q P F G T+ +++A+G +A R IK
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 1121 A-VLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD 1179
VLA+ GM D Y LSGGQKQR+A+A + P I++LDE+TS LD
Sbjct: 125 RDVLADV-----GMLD----YIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLD 175
Query: 1180 SVSESLVQEALEKMMM--GRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
+ + + + K+ T + + H + +D + V+ +G+++ QGS E+
Sbjct: 176 PAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEI 230
|
Length = 282 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 7e-20
Identities = 69/239 (28%), Positives = 113/239 (47%), Gaps = 32/239 (13%)
Query: 1011 LKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFM 1070
L+NV F P R +L LSL AGK L+G +G GKST++ +L R P +G + +
Sbjct: 14 LRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 1071 DEQDIRNYNLKQLRSHIALVSQE-PTLFAGTIRENIA------------YGKADARESEI 1117
D Q + +++ K +A + Q+ P T+RE +A +G AD + E
Sbjct: 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVE- 129
Query: 1118 KKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSA 1177
+A L + D LSGG++QR +A + ++ LLLDE TSA
Sbjct: 130 -EAISLVGLKPLAHRLVD-----------SLSGGERQRAWIAMLVAQDSRCLLLDEPTSA 177
Query: 1178 LDSVSESLVQEALEKM--MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELV 1233
LD + V + ++ G T + V H ++ + D + ++ G ++ QG+ EL+
Sbjct: 178 LDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 9e-20
Identities = 70/213 (32%), Positives = 113/213 (53%), Gaps = 15/213 (7%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRS 421
V+ LNL + G V L+G SG GK+T + L+ P EG++ +DG + ++ +
Sbjct: 21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QR 78
Query: 422 QMGLVNQEPVLFA-TSITENILFG--KDGASMDDVISAAKAANAHDFITKLPDGYETQVG 478
+ +V Q LF S+ EN+ +G G ++ K A + L G+E +
Sbjct: 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALE---LVDL-AGFEDRYV 134
Query: 479 QLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTL 536
Q+SGGQ+QR+A+ARALI PK+LL DE S LDA R ++E I ++ + T+L
Sbjct: 135 D---QISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSL 191
Query: 537 IIAHRLS-TIRTANLIMVLKAGKVVESGSHNEL 568
+ H S ++ ++V+ GK+++ GS EL
Sbjct: 192 YVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 1e-19
Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 14/225 (6%)
Query: 1011 LKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFM 1070
FF + L GLSL+I G V ++G +G GKST++ + P G + +
Sbjct: 7 ATKTFFKGTPLEKR-ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILI 65
Query: 1071 DEQDIRNYNLKQLRSHIALVSQEP---TLFAGTIRENIAYGKADARESEIKKAAVLANAH 1127
D D+ ++ + + +A V Q+P T TI EN+A A++R + ++ L
Sbjct: 66 DGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLAL--AESRGKKRGLSSALNERR 123
Query: 1128 -----EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVS 1182
E ++ + G + +R LSGGQ+Q ++L A L P ILLLDE T+ALD +
Sbjct: 124 RSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKT 183
Query: 1183 ESLVQEALEKMMMGR--TCVVVAHRL-STIQKSDTIAVIKNGRVV 1224
V E K++ T ++V H + + + + ++ +G++V
Sbjct: 184 AEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 1e-19
Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 28/238 (11%)
Query: 354 YPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRR 413
Y R V+ ++L V +G+ VGL+G +G+GK+TT ++ P G++LLD I +
Sbjct: 14 YKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITK 70
Query: 414 LHLKWLRSQMGL--VNQEPVLF-ATSITENIL-----FGKDGASMDDVISAAKAANA--H 463
L + R+++G+ + QE +F ++ +NI+ KD + +A
Sbjct: 71 LPM-HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDL----KKAERKEELDALLE 125
Query: 464 DF-ITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIV 522
+F IT L D + +SGG+++R+ IARAL +PK +LLDE + +D + +
Sbjct: 126 EFHITHLRD-------SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI 178
Query: 523 QEAIDKV-SKGRTTLIIAHRL-STIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYY 578
Q I + +G LI H + T+ + ++ GKV+ GS E++N + Y
Sbjct: 179 QRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRRVY 236
|
Length = 243 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 1e-19
Identities = 71/237 (29%), Positives = 115/237 (48%), Gaps = 57/237 (24%)
Query: 1028 KGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPLKGSVFMDEQDIRNYNLKQL 1083
G++L++ G+T+ +VG+SGCGKST IIGL++ G V +D+ +
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK----ATDGEVAWLGKDLLGMKDDEW 93
Query: 1084 ---RSHIALVSQEPTLFAG-----TIRENIA------YGKADARESE------IKKAAVL 1123
RS I ++ Q+P A TI E IA + K +E + + K +L
Sbjct: 94 RAVRSDIQMIFQDP--LASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLL 151
Query: 1124 AN-----AHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSAL 1178
N HEF SGGQ QRI +ARA++ P +++ DE SAL
Sbjct: 152 PNLINRYPHEF-------------------SGGQCQRIGIARALILEPKLIICDEPVSAL 192
Query: 1179 DSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
D ++ V L+++ MG + + +AH L+ ++ SD + V+ G VE G+++E+
Sbjct: 193 DVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249
|
Length = 331 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 1e-19
Identities = 59/215 (27%), Positives = 109/215 (50%), Gaps = 12/215 (5%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW 418
D ++G++ RV G+ GL+G +G+GK+TTI +L P G + G+ + R +
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPRE- 70
Query: 419 LRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYE--TQ 476
+R ++G+V Q+ + ++ L G + + + A + I +L D
Sbjct: 71 VRRRIGIVFQDLSV------DDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEA 124
Query: 477 VGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRT 534
+L SGG ++R+ IAR+L+ P++L LDE T LD Q+ V E I+K+ + G T
Sbjct: 125 ADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT 184
Query: 535 TLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNEL 568
L+ H + + + + ++ G+++ G+ EL
Sbjct: 185 ILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 1e-19
Identities = 63/250 (25%), Positives = 119/250 (47%), Gaps = 34/250 (13%)
Query: 1008 RIELKNVFFAY-PTRPDQM-ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLK 1065
+I++KN+ + P ++ L +S++I G+ +A++GQ+G GK+T I L P
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 1066 GSV---FMDEQDIRNY---------------------NLKQLRSHIALVSQ--EPTLFAG 1099
G++ F DE++ + +K++R + +V Q E LF
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121
Query: 1100 TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALA 1159
TI ++I +G + K A ++I + ++Y +LSGGQK+R+ALA
Sbjct: 122 TIEKDIIFG---PVSMGVSKEEAKKRAAKYIE-LVGLDESYLQRSPFELSGGQKRRVALA 177
Query: 1160 RAILKNPSILLLDEATSALDSVSESLVQEALEKM-MMGRTCVVVAHRL-STIQKSDTIAV 1217
+ P L+ DE T+ LD + E + + G+T ++V H L + ++ +
Sbjct: 178 GILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIF 237
Query: 1218 IKNGRVVEQG 1227
K+G++++ G
Sbjct: 238 FKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 2e-19
Identities = 74/248 (29%), Positives = 115/248 (46%), Gaps = 58/248 (23%)
Query: 357 RPDTLV--LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGY---KI 411
+P+ LV L G++ + GK++ +VG SG GKST LL P GE+ G K
Sbjct: 23 KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82
Query: 412 RRLHLKWLRSQMGLVNQ-----------------EPVLFATSITENILFGKDGASMDDVI 454
K LR ++ +V Q EP+L TS++
Sbjct: 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLS---------------- 126
Query: 455 SAAKAANAHDFITKL---PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEAT 511
+A + A + K+ P+ Y + SGGQ+QRIAIARAL+ DP +++ DE
Sbjct: 127 AAERREKALAMMAKVGLRPEHY----DRYPHMFSGGQRQRIAIARALMLDPDVVVADEPV 182
Query: 512 SALD----AQSERI---VQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESG 563
SALD AQ + +Q+ + G + + I+H LS + A+ +MV+ G+ VE G
Sbjct: 183 SALDVSVQAQVLNLMMDLQQEL-----GLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237
Query: 564 SHNELMNR 571
+ ++ N
Sbjct: 238 TKEQIFNN 245
|
Length = 327 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.0 bits (223), Expect = 2e-19
Identities = 63/210 (30%), Positives = 105/210 (50%), Gaps = 24/210 (11%)
Query: 378 LVGGSGSGKSTTIALLQRFYDPV-----EGEVLLDGYKI--RRLHLKWLRSQMGLVNQEP 430
++G SG GKST + + R D + G ++ DG I + LR ++G+V Q+P
Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129
Query: 431 VLFATSITENILFG------KDGASMDDVI--SAAKAANAHDFITKLPDGYETQVGQLGF 482
F SI +NI +G D +++++ S KAA L D ++ +
Sbjct: 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAA--------LWDEVSDRLDKNAL 181
Query: 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRL 542
+SGGQ+QR+ +AR L +P+ILLLDE TSALD ++ +++ I ++ T +I+ H +
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNM 241
Query: 543 STI-RTANLIMVLKAGKVVESGSHNELMNR 571
R ++ M G +VE +L
Sbjct: 242 QQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271
|
Length = 286 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 2e-19
Identities = 76/230 (33%), Positives = 117/230 (50%), Gaps = 14/230 (6%)
Query: 348 RDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLD 407
R+V F P R TL L L+L PAGK GL+G +GSGKST + +L R P EGE+LLD
Sbjct: 15 RNVSFRVPGR--TL-LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLD 71
Query: 408 GYKIRRLHLKWLRSQMG-LVNQEPVLFATSITENILFGK---DGASMDDVISAAKAANAH 463
+ K ++ L Q P ++ E + G+ GA AA
Sbjct: 72 AQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGAL--GRFGAADREKVE 129
Query: 464 DFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQ 523
+ I+ + G + +L +SGG++QR IA + +D + LLLDE TSALD + V
Sbjct: 130 EAISLV--GLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVL 187
Query: 524 EAIDKVSKGRTTLIIA--HRLS-TIRTANLIMVLKAGKVVESGSHNELMN 570
+ ++S+ R +IA H ++ R + ++ L+ G+++ G+ ELM
Sbjct: 188 ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237
|
Length = 265 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 2e-19
Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 15/211 (7%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPLKGSVFMDEQDIRNYNLK 1081
IL +SL +E+G+ +A++G SG GK+T I G +E G + + Q +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT-TSGQILFNGQPRKPD--- 77
Query: 1082 QLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTY 1140
Q + +A V Q+ L G T+RE + Y A R A+ E ++D T
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTY-TAILRLPRKSSDAIRKKRVE-DVLLRDLALTR 135
Query: 1141 CGERGVQ-LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM-GRT 1198
G V+ +SGG+++R+++A +L +P +L+LDE TS LDS + + L ++ R
Sbjct: 136 IGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRI 195
Query: 1199 CVVVAH--RLSTIQKSDTIAVIKNGRVVEQG 1227
++ H R + D I ++ +G +V G
Sbjct: 196 VILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 19/215 (8%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPLKGSVFMDEQDIRNYNL- 1080
ILKG++L ++ G+ A++G +G GKST I+G + Y+ +G + D +DI +
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK--YEVTEGEILFDGEDILELSPD 76
Query: 1081 KQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFIS--GMKDGY 1137
++ R+ I L Q P G T + + R + + E G+ + +
Sbjct: 77 ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF 136
Query: 1138 DTYCGERGVQ--LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM- 1194
ER V SGG+K+R + + +L P + +LDE S LD + +V E + +
Sbjct: 137 ----LERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE 192
Query: 1195 MGRTCVVVAH--RLSTIQKSDTIAVIKNGRVVEQG 1227
GR +++ H RL K D + V+ +GR+V+ G
Sbjct: 193 EGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 3e-19
Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 23/186 (12%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+E R + + V+ L+L + G+ + L+G SG GK+T + L+ F P G +
Sbjct: 15 VELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFA-TSITENILFG----KDGASMDD--VISAA 457
+LDG I H+ + V Q LF ++ EN+ FG K A+ V+ A
Sbjct: 72 MLDGQDIT--HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEAL 129
Query: 458 KAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ 517
+ +F + P Q+SGGQ+QR+AIARA++ PK+LLLDE+ SALD +
Sbjct: 130 RMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
Query: 518 SERIVQ 523
+ +Q
Sbjct: 179 LRKQMQ 184
|
Length = 375 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 3e-19
Identities = 60/222 (27%), Positives = 112/222 (50%), Gaps = 27/222 (12%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS 1085
++ G+SL ++ G+ V L+G +G GK+T ++ P G + +D QDI + + R+
Sbjct: 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK-RA 73
Query: 1086 H--IALVSQEPTLFAG-TIRENIA----YGKADARESEIKKAAVLANAHEF-ISGMKDGY 1137
I + QE ++F T+ ENI +E E K +L EF I+ ++
Sbjct: 74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELL---EEFHITHLRK-- 128
Query: 1138 DTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD--SVSE--SLVQEALEKM 1193
+ LSGG+++R+ +ARA+ NP LLLDE + +D +V + +++ ++
Sbjct: 129 -----SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR- 182
Query: 1194 MMGRTCVVVAHRLS-TIQKSDTIAVIKNGRVVEQGSHNELVA 1234
G ++ H + T+ +D +I G+V+ +G+ E+ A
Sbjct: 183 --GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 3e-19
Identities = 125/560 (22%), Positives = 235/560 (41%), Gaps = 60/560 (10%)
Query: 49 NPSSSSLSNDTV--------DKYTLRLLYVAIGVGLSA--FVEGLCWTRTAERQTSRMRM 98
+++ S D Y + +YV + A F GL T + R+
Sbjct: 903 QQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHE 962
Query: 99 EYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQ----VAICEKISNTLAYLSTF 154
+ L SVL+ + +T + G ++++ + D I + + + I TL L
Sbjct: 963 QMLHSVLQAPMAVLNTMKAG-----RILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAI 1017
Query: 155 F-FCLLFSFILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVS 213
F +L +I +AA+P+ ++FI+ F L +K +ES + I ++
Sbjct: 1018 FVVSVLQPYIF-----IAAIPVAVIFIMLRAYF--LRTSQQLKQLESEARSP-IFSHLIT 1069
Query: 214 SIRTVYSYVA-----EHETLIRFSNALQ-KTMELGIKQGFIKGLLMGSMGMIYVGWAFQA 267
S++ +++ A ETL F AL T + ++ M + +I+V +
Sbjct: 1070 SLKGLWTIRAFGRQSYFETL--FHKALNLHTANWFLYLSTLRWFQM-RIDIIFVFFFIAV 1126
Query: 268 WVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPA 327
+ + GE I + I+ L A+ + + + +R+F+ +D
Sbjct: 1127 TFIAIGTNQDGEGEVGIILTLAMNILSTLQ--WAVNSSIDVDGLMRSVSRVFKFIDLPQE 1184
Query: 328 IDTDDKMGKALSYVRGE---IEFRDVYFCYPSRPDTLV--------------LQGLNLRV 370
G Y IE C+PS V LQ L+ V
Sbjct: 1185 EPRPSGGGGK--YQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSV 1242
Query: 371 PAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEP 430
G+ VGL+G +GSGKST ++ L R EGE+ +DG + L+ R G++ Q+
Sbjct: 1243 EGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKV 1301
Query: 431 VLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQ 490
+F+ + +N L + S +++ A+ I + PD + + G+ +S G KQ
Sbjct: 1302 FIFSGTFRKN-LDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQ 1360
Query: 491 RIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANL 550
+ +AR+++ KILLLDE ++ LD + +I+++ + + T ++ HR+ +
Sbjct: 1361 LMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQ 1420
Query: 551 IMVLKAGKVVESGSHNELMN 570
+V++ V + S +L+N
Sbjct: 1421 FLVIEGSSVKQYDSIQKLLN 1440
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (220), Expect = 3e-19
Identities = 74/237 (31%), Positives = 109/237 (45%), Gaps = 26/237 (10%)
Query: 349 DVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDG 408
D++F Y P VL+GLNL GLVG +G GKST L P +G VL G
Sbjct: 6 DLWFRYQDEP---VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG 62
Query: 409 YKI--RRLHLKWLRSQMGLVNQEP--VLFATSITENILFGKDGASMDDVISAAKAANAHD 464
+ + L LR Q+ V Q+P +F T I +I F S
Sbjct: 63 KPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAF-----------SLRNLGVPEA 111
Query: 465 FITKLPDGYETQVGQLGFQ------MSGGQKQRIAIARALIRDPKILLLDEATSALDAQS 518
IT+ D T V F+ +S GQK+R+AIA AL+ + LLLDE T+ LD
Sbjct: 112 EITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG 171
Query: 519 ERIVQEAIDK-VSKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNRGE 573
+ I + V++G +I +H + I ++ + VL+ G+++ G+ E+ E
Sbjct: 172 RTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTE 228
|
Length = 271 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 4e-19
Identities = 60/229 (26%), Positives = 104/229 (45%), Gaps = 35/229 (15%)
Query: 356 SRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH 415
+L ++L + G+ V ++G +G+GKST + L P GEV L+G +
Sbjct: 11 RLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAD-- 68
Query: 416 LKWLRSQM----GLVNQEPVL-FATSITENILFGKDGASMDDVISAAKAANAHDFITKLP 470
W +++ ++ Q L F ++ E + G+ +S A+ L
Sbjct: 69 --WSPAELARRRAVLPQHSSLSFPFTVEEVVAMGR----APHGLSRAEDDA-------LV 115
Query: 471 DGYETQVGQLGF------QMSGGQKQRIAIARALIR------DPKILLLDEATSALD-AQ 517
QV Q+SGG++QR+ +AR L + P+ LLLDE TSALD A
Sbjct: 116 AAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH 175
Query: 518 SERIVQEAIDKVSK-GRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGS 564
+++ A + G +++ H L+ R A+ I++L G++V G+
Sbjct: 176 QHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 4e-19
Identities = 65/248 (26%), Positives = 114/248 (45%), Gaps = 42/248 (16%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
I+ + Y + L + L P G+++ L+G SG+GKS+ + +L P G +
Sbjct: 3 IQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 405 LLDG-----------YKIRRLHLKWLRSQMGLVNQEPVLFA-TSITENIL--------FG 444
+ G IR L R +G+V Q+ L+ ++ EN++
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDL-----RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLS 114
Query: 445 KDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKI 504
KD A + K + + P +SGGQ+QR+AIARAL+ +P++
Sbjct: 115 KDQA-LARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQRVAIARALMMEPQV 162
Query: 505 LLLDEATSALDAQSERIVQEAIDKVSK-GRTTLIIAHRLSTIR-TANLIMVLKAGKVVES 562
LL DE T+ALD + + I ++++ G T +I+ H + R TA+ ++ ++ G +VE
Sbjct: 163 LLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222
Query: 563 GSHNELMN 570
G +
Sbjct: 223 GDASCFTE 230
|
Length = 242 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 4e-19
Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 25/218 (11%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKST---TIALLQRFYDPVEGEVLLDGYKIRRLHLK- 417
+L+G+NL V G+ ++G +GSGKST TI + Y+ EGE+L DG I L L
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDI--LELSP 75
Query: 418 WLRSQMG--LVNQEPVLFA-TSITE------NILFGKDGASMDDVISAAKAANAHDFITK 468
R++ G L Q PV + ++ N G G + + + A +
Sbjct: 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAE----LLG 131
Query: 469 LPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDK 528
L + + + GF SGG+K+R I + L+ +PK+ +LDE S LD + +IV E I+
Sbjct: 132 LDEEFLERYVNEGF--SGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINA 189
Query: 529 -VSKGRTTLIIAH--RLSTIRTANLIMVLKAGKVVESG 563
+GR LII H RL + + VL G++V+SG
Sbjct: 190 LREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 4e-19
Identities = 62/220 (28%), Positives = 103/220 (46%), Gaps = 24/220 (10%)
Query: 1024 QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL 1083
+ +L G+SL + G+ +A++G +G GKST++ L P G V ++ + ++ ++L
Sbjct: 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEEL 73
Query: 1084 RSHIALVSQEPTL-FAGTIRENIAYGK------ADARESEIKKAAVLANAHEFISGMKDG 1136
H A++ Q +L F T++E + G+ + E E A LA
Sbjct: 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAAT---------D 124
Query: 1137 YDTYCGERGVQLSGGQKQRIALAR------AILKNPSILLLDEATSALD-SVSESLVQEA 1189
G LSGG++QR+ LAR + + L LDE TSALD + ++ A
Sbjct: 125 LSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 1190 LEKMMMGRTCVVVAHRLS-TIQKSDTIAVIKNGRVVEQGS 1228
+ G + V H L+ Q +D I ++ GRV+ GS
Sbjct: 185 RQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224
|
Length = 259 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 4e-19
Identities = 68/224 (30%), Positives = 104/224 (46%), Gaps = 46/224 (20%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKST---TIALLQRFYDPVEGEVLLDGYKIRRLHLKW 418
+L+G+NL + G+ L+G +GSGKST TI + Y+ EGE+L G I L +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK-YEVTEGEILFKGEDITDLPPE- 72
Query: 419 LRSQMG--LVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQ 476
R+++G L Q P G D F+ + +G+
Sbjct: 73 ERARLGIFLAFQYPPEI------------PGVKNAD------------FLRYVNEGF--- 105
Query: 477 VGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDK-VSKGRTT 535
SGG+K+R I + L+ +P + +LDE S LD + R+V E I+K +G++
Sbjct: 106 --------SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSV 157
Query: 536 LIIAH--RLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEY 577
LII H RL + + VL G++V+SG EL E Y
Sbjct: 158 LIITHYQRLLDYIKPDRVHVLYDGRIVKSGD-KELALEIEKKGY 200
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 5e-19
Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 14/172 (8%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW 418
D +L ++ + AG+ + G SG GKST + ++ P G +L +G I L +
Sbjct: 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78
Query: 419 LRSQMGLVNQEPVLFATSITENILFG----KDGASMDDVISAAKAANAHDFITKLPDGYE 474
R Q+ Q P LF ++ +N++F + F LP +
Sbjct: 79 YRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPA-----IFLDDLERF--ALP---D 128
Query: 475 TQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAI 526
T + + ++SGG+KQRI++ R L PK+LLLDE TSALD ++ V E I
Sbjct: 129 TILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEII 180
|
Length = 225 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 5e-19
Identities = 60/232 (25%), Positives = 110/232 (47%), Gaps = 21/232 (9%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IE ++V + +L L+ +V G+ +VG +G+GK+T ++LL + P G+V
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 405 LLDGYKIRRLHLKW-LRSQMGLVN---QEPVLFATSITENILFGKDGASM--DDVISAAK 458
L G + + + LR ++GLV+ E ++ + +L G + + ++A
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148
Query: 459 AANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS 518
A A + L G + + +S G+++R+ IARAL++DP++L+LDE LD +
Sbjct: 149 LAAAQWLLELL--GAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIA 206
Query: 519 -----ERIVQEAIDKVSKGRTTLIIAHRLSTIRTANL--IMVLKAGKVVESG 563
R+ + A + L + H I ++LK G+VV G
Sbjct: 207 REQLLNRLEELAASPGAP--ALLFVTHHAEEI-PPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 5e-19
Identities = 76/271 (28%), Positives = 130/271 (47%), Gaps = 30/271 (11%)
Query: 979 RSVFAILDRRSEIDPDSPQGRDIKRQMRGR--------IELKNVFFAYPTRPDQMILKGL 1030
R+V RR E+ P + + I I+L V +Y D+ ++ GL
Sbjct: 4 RAVAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYG---DKAVVNGL 60
Query: 1031 SLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV-FMDEQDIRNYNLKQLRSHIAL 1089
S + +G+ L+G +G GKSTI ++ P G + + L R+ I +
Sbjct: 61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLA--RARIGV 118
Query: 1090 VSQEPTL-FAGTIREN-IAYGK---ADARESEIKKAAVLANAHEFISGMKDGYDTYCGER 1144
V Q L T+REN + +G+ RE E AV+ + EF + ++ D R
Sbjct: 119 VPQFDNLDLEFTVRENLLVFGRYFGMSTREIE----AVIPSLLEF-ARLESKADA----R 169
Query: 1145 GVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVA 1203
LSGG K+R+ LARA++ +P +L+LDE T+ LD + L+ E L ++ G+T ++
Sbjct: 170 VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTT 229
Query: 1204 HRLSTIQK-SDTIAVIKNGRVVEQGSHNELV 1233
H + ++ D + V++ GR + +G + L+
Sbjct: 230 HFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260
|
Length = 340 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 91.9 bits (228), Expect = 5e-19
Identities = 104/437 (23%), Positives = 178/437 (40%), Gaps = 49/437 (11%)
Query: 151 LSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIE--------SYG 202
L+ FFFC+ + LS + + ++ LL + ++
Sbjct: 137 LAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHA 196
Query: 203 VAGGIAEQAVSSIRTV-YSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSMGM-IY 260
+A G E + IR + +++ A E+ ++ + + FI G + +
Sbjct: 197 IAFGAKELKIHGIRRLSFAHGAIQESANNIAD-----LHIIEILIFIAAENFGQLLFFLL 251
Query: 261 VGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGL-SVLGALPNLTAITEAKVAATRIF 319
+G A A + + S FV + I G L ++ ALP + +A++A R+
Sbjct: 252 IGCALFA---AAMFASIDAAAISAFVLALLYIKGPLEMLVSALP---ILAQAQIACQRLA 305
Query: 320 EMVDRTPA-------IDTDDKMGKALSYVRGEIEFRDVYFCYPS--RPDTLVLQGLNLRV 370
+ +R D D+ + A IE +DV+ + + L ++LR+
Sbjct: 306 DFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRI 365
Query: 371 PAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEP 430
G V +VG +G GKST L Y P EGE+LLDG + R
Sbjct: 366 AQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD--------- 416
Query: 431 VLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQ----MSG 486
LF+ + LF D D A NA ++ +L + ++ GF +S
Sbjct: 417 -LFSAIFADFHLF--DDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473
Query: 487 GQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAI--DKVSKGRTTLIIAHRLST 544
GQ++R+A+ A + D ILL DE + D +R E + D +G+T +II+H
Sbjct: 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQY 533
Query: 545 IRTANLIMVLKAGKVVE 561
A+ I+ L AG +V+
Sbjct: 534 FELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 5e-19
Identities = 71/220 (32%), Positives = 114/220 (51%), Gaps = 21/220 (9%)
Query: 1029 GLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMD----EQDIRNYN---LK 1081
SL IE G+ L+G SG GKST++ + +GSV + D+ N + L+
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 1082 QLRSH-IALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFIS--GMKDGY 1137
+LR+H +++V Q+ L T+ EN+A+G + KA E + G+
Sbjct: 102 RLRTHRVSMVFQQFALLPWRTVEENVAFG---LEMQGMPKAERRKRVDEQLELVGLAQWA 158
Query: 1138 DTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--M 1195
D GE LSGG +QR+ LARA ILL+DE SALD + + +Q+ L ++ +
Sbjct: 159 DRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKL 214
Query: 1196 GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
+T V V+H L K + IA+++ GR+++ G+ E+V
Sbjct: 215 KKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 6e-19
Identities = 64/223 (28%), Positives = 108/223 (48%), Gaps = 32/223 (14%)
Query: 1029 GLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPLKGSVFMDEQDIRNYNLKQLR 1084
L+L ++ G+ +ALVG+SG GKS I+GLL G + +D + + +++
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR- 62
Query: 1085 SHIALVSQEP-----------TLFAGTIRE-NIAYGKADARESEIKKAAVLANAHEFISG 1132
HIA + Q P T+R +A A E +A L + E +
Sbjct: 63 -HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVL-- 119
Query: 1133 MKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEK 1192
Y QLSGG QR+ +A A+L P L+ DE T+ LD V+++ V + L +
Sbjct: 120 -----KKY----PFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 1193 MM--MGRTCVVVAHRLSTI-QKSDTIAVIKNGRVVEQGSHNEL 1232
+ G +++ H L + + +D +AV+ +GR+VE+G+ E+
Sbjct: 171 LRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 6e-19
Identities = 72/318 (22%), Positives = 138/318 (43%), Gaps = 33/318 (10%)
Query: 360 TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL 419
T VL+ ++ ++ G+ + + G +GSGKS+ + ++ +P EG++ G
Sbjct: 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----------- 487
Query: 420 RSQMGLVNQEPVLFATSITENILFGKDGASMDDV--ISAAKAANAHDFITKLPDGYETQV 477
++ Q + +I +NI+FG S D+ S KA + I P+ +T +
Sbjct: 488 --RISFSPQTSWIMPGTIKDNIIFG---LSYDEYRYTSVIKACQLEEDIALFPEKDKTVL 542
Query: 478 GQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER-IVQEAIDKVSKGRTTL 536
G+ G +SGGQ+ RI++ARA+ +D + LLD + LD +E+ I + + K+ +T +
Sbjct: 543 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRI 602
Query: 537 IIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGE--GGEYYQMVELQQMASENDTS- 593
++ +L ++ A+ I++L G G+ +EL + + ++E S
Sbjct: 603 LVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSI 662
Query: 594 -NDTFNDFSHQMDAINL-YKRTIAPS----PMSMRSSAASTPALNPFSPA-----LSVGT 642
+T S D+ TI S P + LNP + A + +G
Sbjct: 663 LTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARKFSFVQMGP 722
Query: 643 PYSYTIQYDPDDDSLGDR 660
+ + +R
Sbjct: 723 QKAQATTIEDAVREPSER 740
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 88.8 bits (220), Expect = 6e-19
Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 22/233 (9%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
I+L V +Y D++++ LS I G+ L+G +G GKSTI +L P +G +
Sbjct: 5 IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 1069 -FMDEQDIRNYNLKQLRSHIALVSQEPTL-FAGTIRENI----AYGKADARESEIKKAAV 1122
+ E L R I +V Q L T+REN+ Y RE E AV
Sbjct: 62 TVLGEPVPSRARLA--RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIE----AV 115
Query: 1123 LANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVS 1182
+ + EF + ++ D R LSGG K+R+ LARA++ +P +L+LDE T+ LD +
Sbjct: 116 IPSLLEF-ARLESKADV----RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 170
Query: 1183 ESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELV 1233
L+ E L ++ G+T ++ H + ++ D + V+++GR + +G + L+
Sbjct: 171 RHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALI 223
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.5 bits (219), Expect = 6e-19
Identities = 67/243 (27%), Positives = 117/243 (48%), Gaps = 16/243 (6%)
Query: 343 GEIEFRDVYFCYPSRP--DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV 400
+I +V + Y + + L +L K ++G +GSGKST I L
Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 401 EGEVLLDGYKI-----RRLHLKWLRSQMGLVNQEP--VLFATSITENILFGKDGASMDDV 453
G+ ++ Y I + +K LR ++GLV Q P LF +I ++I FG +
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124
Query: 454 ISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSA 513
+ K + +LP+ Y V + F++SGGQK+R+A+A + D L+LDE T
Sbjct: 125 EAYKKVPELLKLV-QLPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180
Query: 514 LDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMN 570
LD + E ++++K + +++ H + + R A+ ++V+ GKV+ GS E+ +
Sbjct: 181 LDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240
Query: 571 RGE 573
E
Sbjct: 241 NQE 243
|
Length = 289 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 8e-19
Identities = 61/196 (31%), Positives = 100/196 (51%), Gaps = 28/196 (14%)
Query: 354 YPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRR 413
Y +P L+ +NL + +G+ + ++G SG GK+T + L+ F G + LDG +
Sbjct: 11 YGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV-- 65
Query: 414 LHLKWLRSQMGLVNQ-EPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDG 472
+ ++ G+V Q E +L ++ +N+ FG A ++ + AH + K
Sbjct: 66 ---EGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVE---KMQRLEIAHQMLKK---- 115
Query: 473 YETQVGQLGF------QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAI 526
VG G Q+SGGQ+QR+ IARAL +P++LLLDE ALDA + +Q +
Sbjct: 116 ----VGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLL 171
Query: 527 DKV--SKGRTTLIIAH 540
K+ G+ L+I H
Sbjct: 172 LKLWQETGKQVLLITH 187
|
Length = 255 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 9e-19
Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 34/212 (16%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRS 421
L+ ++ VP G+ +GL+G +G+GKST + LL Y P G V + G ++ L L
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG-RVSSL----LGL 91
Query: 422 QMGLVNQEPVLFATSITENILF-----GKDGASMDDVISAAKAANAHDFI---TKLPDGY 473
G P L + ENI G +D+ I D I ++L D
Sbjct: 92 GGGF---NPEL---TGRENIYLNGRLLGLSRKEIDEKI---------DEIIEFSELGDFI 136
Query: 474 ETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAI-DKVSKG 532
+ V S G K R+A A A +P ILL+DE + DA + Q + + + +G
Sbjct: 137 DLPVKTY----SSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQG 192
Query: 533 RTTLIIAHRLSTIR-TANLIMVLKAGKVVESG 563
+T ++++H S+I+ + +VL+ GK+ G
Sbjct: 193 KTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 9e-19
Identities = 61/166 (36%), Positives = 90/166 (54%), Gaps = 18/166 (10%)
Query: 360 TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL 419
T VL ++L +P+G+ V L+G SGSGK+T + ++ G + G + RLH +
Sbjct: 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR-- 72
Query: 420 RSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDF---ITKLPDGYET 475
++G V Q LF ++ +NI FG V+ + NA +T+L +
Sbjct: 73 DRKVGFVFQHYALFRHMTVFDNIAFGLT------VLPRRERPNAAAIKAKVTQLLE--MV 124
Query: 476 QVGQLG----FQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ 517
Q+ L Q+SGGQKQR+A+ARAL +P+ILLLDE ALDAQ
Sbjct: 125 QLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 1e-18
Identities = 60/212 (28%), Positives = 112/212 (52%), Gaps = 19/212 (8%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRS 421
VL+ +NL++ G+ + + G +GSGK++ + L+ +P EG++ G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98
Query: 422 QMGLVNQEPVLFATSITENILFGKDGASMDDV--ISAAKAANAHDFITKLPDGYETQVGQ 479
++ +Q + +I ENI+FG S D+ S KA + ITK P+ T +G+
Sbjct: 99 RISFSSQFSWIMPGTIKENIIFG---VSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGE 155
Query: 480 LGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER-IVQEAIDKVSKGRTTLII 538
G +SGGQ+ RI++ARA+ +D + LLD LD +E+ I + + K+ +T +++
Sbjct: 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILV 215
Query: 539 AHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570
++ ++ A+ I++L G G+ +EL +
Sbjct: 216 TSKMEHLKKADKILILHEGSSYFYGTFSELQS 247
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 1e-18
Identities = 58/229 (25%), Positives = 120/229 (52%), Gaps = 5/229 (2%)
Query: 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402
G++ +D+ Y + VL+ ++ + G+ VGL+G +GSGKST ++ R + EG
Sbjct: 1 GQMTVKDLTAKY-TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 58
Query: 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENI-LFGKDGASMDDVISAAKAAN 461
++ +DG + L+ R G++ Q+ +F+ + +N+ +GK S +++ A+
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGK--WSDEEIWKVAEEVG 116
Query: 462 AHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERI 521
I + P + + G +S G KQ + +AR+++ KILLLDE ++ LD + ++
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176
Query: 522 VQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570
+++ + + T ++ HR+ + +V++ KV + S +L+N
Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN 225
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 1e-18
Identities = 58/219 (26%), Positives = 106/219 (48%), Gaps = 28/219 (12%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
++G+S ++ G+ L+G +G GK+T I +L P G + D+ +++R
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRR 74
Query: 1087 IALVSQEPTLFAG-TIRENIA-----YG----KADARESEIKKAAVLANAHEFISGMKDG 1136
I +V Q+ ++ T EN+ YG + R E+ L A + +
Sbjct: 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVK---- 130
Query: 1137 YDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-- 1194
TY SGG ++R+ +AR+++ P +L LDE T LD + + V E +EK+
Sbjct: 131 --TY--------SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE 180
Query: 1195 MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
G T ++ H + ++ D +A+I +GR++ +G+ EL
Sbjct: 181 FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 1e-18
Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 22/217 (10%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRS 421
+L G++L + G+ + ++G +G+GKST + L P GEV L+G + + L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 422 QMGLVNQEPVL-FATSITENILFG-----KDGASMDDVISAAKAANAHDFITKLPDGYET 475
++ Q L F ++ E + G +D AA+A A D G
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDL-----SGLAG 130
Query: 476 QVGQLGFQMSGGQKQRIAIARAL------IRDPKILLLDEATSALD-AQSERIVQEAIDK 528
+ + +SGG++QR+ +AR L + + L LDE TSALD A ++ A
Sbjct: 131 RDYR---TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQL 187
Query: 529 VSKGRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGS 564
+G L + H L+ + A+ I++L G+V+ SGS
Sbjct: 188 AREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224
|
Length = 259 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 1e-18
Identities = 71/236 (30%), Positives = 117/236 (49%), Gaps = 32/236 (13%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+ R + Y VL+G++ + AG+ L+GG+G+GKST + ++ P G +
Sbjct: 12 LCARSISKQYSGVE---VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 405 LLDGYKIRRLHLKWLRS-QMG--LVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAA 460
+ G L ++ Q+G LV QEP+LF S+ ENILFG K
Sbjct: 69 EIGGN--PCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFG-----------LPKRQ 115
Query: 461 NAHDFITKLPDGYETQVG-QLGFQMSGG-----QKQRIAIARALIRDPKILLLDEATSAL 514
+ + +L +G QL S G +Q + I R L+RD +IL+LDE T++L
Sbjct: 116 ASMQKMKQLL----AALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
Query: 515 D-AQSERIVQEAIDKVSKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNEL 568
A++ER+ + +++G + I+H+L IR A+ I V++ G + SG +L
Sbjct: 172 TPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 1e-18
Identities = 109/506 (21%), Positives = 210/506 (41%), Gaps = 39/506 (7%)
Query: 730 LFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICA 789
FLG+ +L +SSL+ + +G+ ++R + + K++ + ++ SA + A
Sbjct: 52 PEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERL--GSARLLA 109
Query: 790 RLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLV-MIAVQPLVIGSYYSR 848
L ++ + S R+ LVQAI ++ S LS ++ L+ ++ + + G +
Sbjct: 110 GLTSDVRNI-SFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLM 168
Query: 849 NVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRIL--GLFKETLRGPKEESLK 906
+ K MA AR+ + + + + +T + + L+ + + ++
Sbjct: 169 ARVYKHMA-AARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIR 227
Query: 907 HSWYSGIGLFSSQFFNTASTALAYWYGGRLL---TQELITPEHLFQAFLILLFTAYVIAE 963
+ + + + S L +W L T T L+LLF +
Sbjct: 228 ANTFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAAT------IVLVLLFLRTPLLS 281
Query: 964 AGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMR-GRIELKNVFFAYPTRP 1022
A + + A + + E+ P + +EL+NV FAY
Sbjct: 282 AVGILPTLLTAQVAFNKIAKL-----ELAPYKADFPRPQAFPDWKTLELRNVRFAYQ--D 334
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ 1082
+ + ++L I+ G+ V L+G +G GKST+ LL Y P G + +D + + L+
Sbjct: 335 NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLED 394
Query: 1083 LRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKK-AAVLANAHEFISGMKDGYDTYC 1141
R + V + LF + + A I+K L AH+ + + DG +
Sbjct: 395 YRKLFSAVFSDYHLFDQLLG-----PEGKASPQLIEKWLQRLELAHK--TSLNDGRFS-- 445
Query: 1142 GERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSV-SESLVQEALEKMM-MGRTC 1199
++LS GQK+R+AL A+L+ IL+LDE + D Q L + G+T
Sbjct: 446 ---NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTI 502
Query: 1200 VVVAHRLSTIQKSDTIAVIKNGRVVE 1225
++H +D + ++NG++ E
Sbjct: 503 FAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 46/243 (18%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
+ LK + + LK +S +I G+ V ++G +G GKST++ L+ Y P G
Sbjct: 24 KKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGK 83
Query: 1068 VFMDEQDIRNYNLKQLRSHIAL-VSQEPTLFAGTIRENI---------AYGKADARESEI 1117
V + ++ I L +P L T RENI + D + EI
Sbjct: 84 VKVTG---------KVAPLIELGAGFDPEL---TGRENIYLRGLILGLTRKEIDEKVDEI 131
Query: 1118 KKAAVLANAHEFISG-MKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATS 1176
+ A L +FI +K TY S G R+A + A P ILLLDE +
Sbjct: 132 IEFAEL---GDFIDQPVK----TY--------SSGMYARLAFSVATHVEPDILLLDEVLA 176
Query: 1177 ALDSVSESLVQEALEKMM----MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNE 1231
D + ++ LE++ +T V+V+H L I++ D +++G++ +GS E
Sbjct: 177 VGD---AAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEE 233
Query: 1232 LVA 1234
++
Sbjct: 234 VIP 236
|
Length = 249 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 91.2 bits (226), Expect = 2e-18
Identities = 97/406 (23%), Positives = 176/406 (43%), Gaps = 61/406 (15%)
Query: 30 GMQYPLMVFVLSFVIN---DYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLCWT 86
G YP+ + + ++ D+ N ++S +KY+L +L +AI + +S ++
Sbjct: 838 GGLYPVFALLYAKYVSTLFDFANLEANS------NKYSLYILVIAIAMFISETLKNYYNN 891
Query: 87 RTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISN 146
E+ M+ +++L QE+ FFD Q + + I+ D + ++ + N
Sbjct: 892 VIGEKVEKTMKRRLFENILYQEISFFD---QDKHAPGLLSAHINRDVHLLKTGLV----N 944
Query: 147 TLAYLSTFFFCLLFSFILSWRL-SLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGV-- 203
+ + F L S ++S+ + A LT + + +F K +E +
Sbjct: 945 NIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQ 1004
Query: 204 AGGI----------------AEQAVSSIRTVYSYVAEH------ETLIRFSNALQKTMEL 241
G + ++A ++ TV Y E E I +SN QK
Sbjct: 1005 PGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQK---- 1060
Query: 242 GIKQGFIKGLLMG-SMGMIYVGWAFQAWVGSYLVTEKGEKGGSI----FVAGVSIIMGGL 296
++ + +L G S +F W GS+L+ + G+I F+ + +
Sbjct: 1061 --RKTLVNSMLWGFSQSAQLFINSFAYWFGSFLI-----RRGTILVDDFMKSLFTFLFTG 1113
Query: 297 SVLGALPNLTAITE-AKVAATRIFEMVDRTPAIDTDDKMG---KALSYVRGEIEFRDVYF 352
S G L +L +E AK++ + + ++ R ID D G K + ++G+IE DV F
Sbjct: 1114 SYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNF 1173
Query: 353 CYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD 398
Y SRP+ + + L + K+ +VG +GSGKST ++LL RFYD
Sbjct: 1174 RYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD 1219
|
Length = 1466 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 2e-18
Identities = 53/211 (25%), Positives = 100/211 (47%), Gaps = 13/211 (6%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
+ G++ K+ G+ +G +G GK+T I +L P G+ + D+ +++R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRS 67
Query: 1087 IALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFIS--GMKDGYDTYCGE 1143
I +V Q ++ T REN+ + R + K A E + + + D G
Sbjct: 68 IGIVPQYASVDEDLTGRENL---EMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG- 123
Query: 1144 RGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVV 1202
SGG ++R+ +A +++ P +L LDE T+ LD + + + + + G T ++
Sbjct: 124 ---TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLT 180
Query: 1203 AHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
H + K D IA+I +GR++ +G+ EL
Sbjct: 181 THYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 2e-18
Identities = 63/234 (26%), Positives = 123/234 (52%), Gaps = 17/234 (7%)
Query: 1009 IELKNVFFAYPTRPDQ---MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLK 1065
I+ KNV + Y + + + L ++L+++ G+ + ++G++G GKSTI + P +
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 1066 GSVFMDEQDIRNY-NLKQLRSHIALVSQEP--TLFAGTIRENIAYGKAD--ARESEIKKA 1120
G V++D D + NL +R+ +V Q P + A + E++A+G + EI++
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 1121 AVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS 1180
+ + + + GM + Y + LSGGQKQR+A+A + P ++ DE T+ LD
Sbjct: 125 --VDESLKKV-GMYE-YRRHAPH---LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP 177
Query: 1181 VSESLVQEALEKM--MMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
V ++++ G T +++ H + ++D I V+ +G+VV +G+ E+
Sbjct: 178 SGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231
|
Length = 280 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.8 bits (212), Expect = 2e-18
Identities = 60/221 (27%), Positives = 114/221 (51%), Gaps = 21/221 (9%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKI--RRLH 415
++ +++ P ++G SG GKST + + R +D V G++LLD I R +
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 416 LKWLRSQMGLVNQEPVLF-ATSITENILFGK------DGASMDDVISAAKAANAHDFITK 468
+R ++G+V Q+P F A SI +N++ G + + D+++ ++ A
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVA------ 133
Query: 469 LPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDK 528
L D + ++ ++SGGQ+QR+ IAR + P+++L+DE SALD S ++E I++
Sbjct: 134 LWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEE 193
Query: 529 VSKGRTTLIIAHRL-STIRTANLIMVLKAGKVVESGSHNEL 568
+ + T +I+ H + R ++ G +VE G ++
Sbjct: 194 LKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234
|
Length = 252 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 2e-18
Identities = 59/207 (28%), Positives = 112/207 (54%), Gaps = 18/207 (8%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP---LKGSVFMDEQDIRNYNLKQL 1083
L +SLK+ AG+ V+L G++G GKST++ +L Y P +G + + ++++ N++
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQASNIRDT 79
Query: 1084 -RSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYC 1141
R+ IA++ QE L ++ ENI G + A+ A + ++ +K +
Sbjct: 80 ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPA- 138
Query: 1142 GERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE-----SLVQEALEKMMMG 1196
L GQ+Q + +A+A+ K +L+LDE T++L + SE ++++ G
Sbjct: 139 -TPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAH---G 193
Query: 1197 RTCVVVAHRLSTIQK-SDTIAVIKNGR 1222
C+ ++H+L+ ++ SDTI VI++GR
Sbjct: 194 IACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 3e-18
Identities = 64/207 (30%), Positives = 102/207 (49%), Gaps = 8/207 (3%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDG---YKIRRLHLKW 418
VL ++L + G++VGL+G SG GKST LL P +G V G Y++ R +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 419 LRSQMGLVNQE-PVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQV 477
R + LV Q+ P +T + G+ + + + + A + + +
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELL-DMVGLRSEDA 144
Query: 478 GQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTT 535
+L Q+SGGQ QRI IARAL PK+++LDEA S LD + ++ E + K+ + G
Sbjct: 145 DKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAY 204
Query: 536 LIIAHRLSTI-RTANLIMVLKAGKVVE 561
L I H L + + V+ G++VE
Sbjct: 205 LFITHDLRLVQSFCQRVAVMDKGQIVE 231
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 3e-18
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 11/207 (5%)
Query: 366 LNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGL 425
++L + G+ L+G SG GKST + +L F P G+++LDG + H+ + + +
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS--HVPPYQRPINM 95
Query: 426 VNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQM 484
+ Q LF ++ +NI FG D + A A+ ++ + + + + Q+
Sbjct: 96 MFQSYALFPHMTVEQNIAFG---LKQDKLPKAEIASRVNEMLGLV--HMQEFAKRKPHQL 150
Query: 485 SGGQKQRIAIARALIRDPKILLLDEATSALDAQ-SERIVQEAIDKVSK-GRTTLIIAHRL 542
SGGQ+QR+A+AR+L + PK+LLLDE ALD + +R+ E +D + + G T +++ H
Sbjct: 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ 210
Query: 543 STIRT-ANLIMVLKAGKVVESGSHNEL 568
T A I ++ GK V+ G E+
Sbjct: 211 EEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
Length = 377 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 3e-18
Identities = 67/220 (30%), Positives = 104/220 (47%), Gaps = 24/220 (10%)
Query: 357 RPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGY---KIRR 413
VL ++L + +G++V L+G SG GKST LL P +G V G K+ R
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81
Query: 414 LHLKWLRSQMGLVNQEP---VLFATSITENILFGKDGASMDDVISAAKAANAH--DFITK 468
K R + +V Q+ V ++ E I + ++S KA + +
Sbjct: 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREII-----REPLRHLLSLDKAERLARASEMLR 136
Query: 469 LPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQ-EAID 527
D ++ + + Q+SGGQ QR+ +ARAL +PK+L+LDEA S LD ++Q I
Sbjct: 137 AVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD----LVLQAGVIR 192
Query: 528 KVSK-----GRTTLIIAHRLSTI-RTANLIMVLKAGKVVE 561
+ K G L I H L + R +MV+ G++VE
Sbjct: 193 LLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 3e-18
Identities = 65/202 (32%), Positives = 98/202 (48%), Gaps = 35/202 (17%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+E +NV Y +++LK LS +I+ G +A+VG +G GKST++ LL PL G+V
Sbjct: 322 LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQE-PTLFAG-TIRENIAYGKADARESEIKKAAVLANA 1126
+K I Q L T+ E ++ G D E E++ A
Sbjct: 380 ------KVGETVK-----IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVR-----AYL 423
Query: 1127 HEFISGMKDGYDTYCGERGVQ----LSGGQKQRIALARAILKNPSILLLDEATSALDSVS 1182
F G GE + LSGG+K R+ LA+ +L+ P++LLLDE T+ LD S
Sbjct: 424 GRF--GFT-------GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES 474
Query: 1183 ESLVQEALEKMMMGRTCVVVAH 1204
++EAL G T ++V+H
Sbjct: 475 LEALEEALLD-FEG-TVLLVSH 494
|
Length = 530 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 3e-18
Identities = 68/215 (31%), Positives = 109/215 (50%), Gaps = 20/215 (9%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL---HLKWL 419
LQG+ + G+ L G SG+GKST + L+ P G++ G+ I RL + +L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 420 RSQMGLVNQEP-VLFATSITENILFGK--DGASMDDVISAAKAANAHDFITKLPDGYETQ 476
R Q+G++ Q+ +L ++ +N+ GAS DD+ AA + K+ G +
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAA-----LDKV--GLLDK 130
Query: 477 VGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD-AQSERIVQ--EAIDKVSKGR 533
Q+SGG++QR+ IARA++ P +LL DE T LD A SE I++ E ++V G
Sbjct: 131 AKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV--GV 188
Query: 534 TTLIIAHRLSTIRTANL-IMVLKAGKVVESGSHNE 567
T L+ H + I + ++ L G + G E
Sbjct: 189 TVLMATHDIGLISRRSYRMLTLSDGHLHG-GVGGE 222
|
Length = 222 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 3e-18
Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 22/220 (10%)
Query: 1020 TRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN 1079
D +L G+ L + G V LVG +G GK+T++ + P G+V + D+ +
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 1080 LKQLRSHIALVSQEPTL-FAGTIRENIAYGKAD-----ARESEIKKAAVLANAHEFISGM 1133
+ +A V Q+ +L F +R+ + G+ +E +AAV M
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVE-------RAM 124
Query: 1134 KDGYDTYCGERGV-QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE----SLVQE 1188
+ +R V LSGG++QR+ LARA+ + +LLLDE T++LD + LV+
Sbjct: 125 ERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRR 184
Query: 1189 ALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227
++ G+T V H L + D + ++ +GRV G
Sbjct: 185 LVDD---GKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
Length = 402 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 4e-18
Identities = 64/233 (27%), Positives = 113/233 (48%), Gaps = 20/233 (8%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IE +++ ++Y + L ++ +A++G +G GKST+ P GSV
Sbjct: 4 IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEP--TLFAGTIRENIAYGKADARESEIKKAAVLANA 1126
+ + I N++++R + LV Q P +F+ T+ ++IA+G + E V A
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDE---ETV---A 115
Query: 1127 HEFISGMKD-GYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL 1185
H S + G + LSGG+K+R+A+A I P +L+LDE T+ LD
Sbjct: 116 HRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG--- 172
Query: 1186 VQEALEKM-----MMGRTCVVVAHRLSTI-QKSDTIAVIKNGRVVEQGSHNEL 1232
V+E ++ + G T + H+L + + +D I V+ GR+V G+ E+
Sbjct: 173 VKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 4e-18
Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 12/163 (7%)
Query: 358 PDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP---VEGEVLLDGYKIRRL 414
P + +L +N + G+ V L+G SG GKST ++ + GE+ L+ ++ L
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML 72
Query: 415 HLKWLRSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAHDFITKLPDGY 473
+ Q+G++ Q+ +LF S+ +N+LF A + A+ A+ + + G
Sbjct: 73 PAA--QRQIGILFQDALLFPHLSVGQNLLF----ALPATLKGNARRNAANAALERS--GL 124
Query: 474 ETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDA 516
+ Q +SGGQ+ R+A+ RAL+ PK LLLDE S LD
Sbjct: 125 DGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 5e-18
Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 46/235 (19%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW 418
+L L+L +P GK L+G +G GKST + R P G V L I L +
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73
Query: 419 LRSQMGLVNQEPVLFATSITENI---------------LFGKDGASMDDVISAAKAANAH 463
L ++ L+ Q + E I L+G+ S +D +A
Sbjct: 74 LARRLALLPQHHL-----TPEGITVRELVAYGRSPWLSLWGR--LSAEDNARVNQAME-- 124
Query: 464 DFITKLPDGYETQVGQLGFQ----MSGGQKQRIAIARALIRDPKILLLDEATSALDA--Q 517
+T++ L + +SGGQ+QR +A L +D ++LLDE T+ LD Q
Sbjct: 125 ----------QTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQ 174
Query: 518 SE--RIVQEAIDKVSKGRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELM 569
E R+++E +G+T + + H L+ R + ++VL G V+ G+ E+M
Sbjct: 175 VELMRLMRELNT---QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 5e-18
Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 36/188 (19%)
Query: 356 SRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH 415
+ D +L+ ++L + G+ +GLVG +G+GKST + +L +P GEV
Sbjct: 12 AYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGL----- 66
Query: 416 LKWLRSQMGLVNQEPVLFAT-SITENILFG-KDGASMDDVISAAKAANAHDFITKLP--- 470
++G ++QEP L ++ + ++ G + + + A A A L
Sbjct: 67 ------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELE 120
Query: 471 ------DGY--ETQVGQ----LGF--------QMSGGQKQRIAIARALIRDPKILLLDEA 510
DG+ E + + LGF +SGG ++R+A+ARAL+ +P +LLLDE
Sbjct: 121 ALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEP 180
Query: 511 TSALDAQS 518
T+ LD +S
Sbjct: 181 TNHLDLES 188
|
Length = 530 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 6e-18
Identities = 66/216 (30%), Positives = 111/216 (51%), Gaps = 27/216 (12%)
Query: 367 NLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ--MG 424
+L V G+ V ++G SG+GKST + L+ F P G + L+G H S+ +
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD----HTTTPPSRRPVS 74
Query: 425 LVNQEPVLFA-TSITENILFGKD------GASMDDVISAAKAANAHDFITKLPDGYETQV 477
++ QE LF+ ++ +NI G + A + + + A+ D + +LP
Sbjct: 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG------ 128
Query: 478 GQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGR--TT 535
Q+SGGQ+QR+A+AR L+R+ ILLLDE SALD + + + +V + R T
Sbjct: 129 -----QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTL 183
Query: 536 LIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELMN 570
L+++H L R A +V+ G++ G +EL++
Sbjct: 184 LMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
Length = 232 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (210), Expect = 6e-18
Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 25/225 (11%)
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQ--DIRNYNL 1080
D+ +LKGL+L LVG +GCGKST+ L P KG+V + D L
Sbjct: 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGL 72
Query: 1081 KQLRSHIALVSQEP--TLFAGTIRENIAYGKAD--ARESEIKK----AAVLANAHEFISG 1132
LR +A V Q+P +F I +IA+ + E+EI + A L +A F
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF--- 129
Query: 1133 MKDGYDTYCGERGVQ-LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALE 1191
+ +Q LS GQK+R+A+A A++ LLLDE T+ LD + + +
Sbjct: 130 ---------RHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIR 180
Query: 1192 KMM-MGRTCVVVAHRLSTI-QKSDTIAVIKNGRVVEQGSHNELVA 1234
+++ G ++ +H + I + SD + V++ G+++ G+ E+ A
Sbjct: 181 RIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225
|
Length = 271 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 6e-18
Identities = 60/215 (27%), Positives = 107/215 (49%), Gaps = 26/215 (12%)
Query: 361 LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLR 420
+ ++L VP GL+G +G+GKST + ++ P GE++ DG+ R L
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLH--- 70
Query: 421 SQMGLVNQEPVLFAT-SITENI-----LFGKDGASMDDVISAAKAANAHDFITKLPDGYE 474
++G + + P L+ + EN+ L G + +D+V++ I L + +
Sbjct: 71 -KIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLN----------IVDLTNTGK 119
Query: 475 TQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV-SKGR 533
+ Q F + G KQR+ IA AL+ PK+L+LDE T+ LD + ++E I +G
Sbjct: 120 KKAKQ--FSL--GMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGI 175
Query: 534 TTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNE 567
T ++ +H LS ++ A+ I ++ G + G N+
Sbjct: 176 TVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 7e-18
Identities = 60/222 (27%), Positives = 104/222 (46%), Gaps = 18/222 (8%)
Query: 1025 MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL- 1083
+ +SL++ G+ V L+G +G GK+T+ L+ FY P G+V +DI ++
Sbjct: 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIA 77
Query: 1084 RSHIALVSQEPTLFAG-TIRENIAYGK---------ADARESEIKKAAVLANAHEFISGM 1133
R IA Q LF G T+ EN+A G + ++ A E + +
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 1134 KDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL-VQEALEK 1192
G LS GQ++R+ +ARA+ P +LLLDE + L + E+ + E + +
Sbjct: 138 --GLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGL-NPEETEELAELIRE 194
Query: 1193 M--MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNE 1231
+ G T +++ H + + +D I V+ G V+ +G+ E
Sbjct: 195 LRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236
|
Length = 250 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 8e-18
Identities = 65/255 (25%), Positives = 121/255 (47%), Gaps = 38/255 (14%)
Query: 997 QGRDIKRQMRGRIEL--KNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTII 1054
+ R++ + R R L + A +K +S + G+T+A++G++G GKST+
Sbjct: 6 EVRNLSKTFRYRTGLFRRQTVEA---------VKPVSFTLREGQTLAIIGENGSGKSTLA 56
Query: 1055 GLLERFYDPLKGSVFMDEQDIRNYNLKQLRS-HIALVSQEP-----------TLFAGTIR 1102
+L +P G + +++ + + RS I ++ Q+P + +R
Sbjct: 57 KMLAGMIEPTSGEILINDHPLH-FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLR 115
Query: 1103 ENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAI 1162
N + + R +I + + G+ + Y L+ GQKQR+ALARA+
Sbjct: 116 LNTDL-EPEQRRKQIFETLRMV-------GLLPDHANYYPH---MLAPGQKQRVALARAL 164
Query: 1163 LKNPSILLLDEATSALD-SVSESLVQEALE-KMMMGRTCVVVAHRLSTIQK-SDTIAVIK 1219
+ P I++ DEA ++LD S+ L+ LE + G + + V + I+ SD + V+
Sbjct: 165 ILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMH 224
Query: 1220 NGRVVEQGSHNELVA 1234
G VVE+GS +++A
Sbjct: 225 EGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.7 bits (209), Expect = 9e-18
Identities = 63/218 (28%), Positives = 113/218 (51%), Gaps = 17/218 (7%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS 1085
+ + L+++I G A++G +GCGKST++ L R P G V++D + I++Y K++
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 1086 HIALVSQEPTLFAG-TIRENIAYGKAD-----ARESEIKKAAVLANAHEFISGMKDGYDT 1139
I L++Q T T++E +A G+ R + + AV M+ T
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAV-------TKAMQATGIT 134
Query: 1140 YCGERGVQ-LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKM--MMG 1196
+ ++ V LSGGQ+QR +A + + +I+LLDE T+ LD + + E L ++ G
Sbjct: 135 HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKG 194
Query: 1197 RTCVVVAHRLSTIQKSDT-IAVIKNGRVVEQGSHNELV 1233
T V H L+ + + + ++ G++V QG+ E+V
Sbjct: 195 YTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232
|
Length = 265 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 9e-18
Identities = 62/247 (25%), Positives = 120/247 (48%), Gaps = 18/247 (7%)
Query: 364 QGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGY---KIRRLHLKWLR 420
Q ++ +P G+ VG +G +G+GKSTT+ +L P G+V ++G + R +L+ +
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIG 100
Query: 421 SQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQL 480
MG Q + + +++ K + D + A DF+T++ D E +
Sbjct: 101 LVMGQKLQ--LWWDLPALDSLEVLKLIYEIPD----DEFAERLDFLTEILD-LEGFLKWP 153
Query: 481 GFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGR--TTLII 538
++S GQ+ R +A AL+ PK+L LDE T LD ++ ++E + + ++ R T L+
Sbjct: 154 VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLT 213
Query: 539 AHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNRGEGGEYY-----QMVELQQMASENDT 592
H I T + ++++ G++V G+ +L + + + Q L Q+A D
Sbjct: 214 THIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSVELKQAKSLSQLALLGDV 273
Query: 593 SNDTFND 599
+ + +
Sbjct: 274 TIEEGLN 280
|
Length = 325 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 1e-17
Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 24/218 (11%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL-- 1083
++K +S + G+T+ LVG+SG GKST L R +G ++ D Q + N N +QL
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLP 359
Query: 1084 -RSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKD-GYDTYC 1141
R I +V Q+P + R N+ + + + I+ M++ G D
Sbjct: 360 VRHRIQVVFQDPN-SSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPET 418
Query: 1142 GER-GVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCV 1200
R + SGGQ+QRIA+ARA++ PS+++LDE TS+LD ++ + L+ +
Sbjct: 419 RHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQ----- 473
Query: 1201 VVAHRLSTIQKS----------DTIAVIKNGRVVEQGS 1228
H+L+ + S + V++ G VVEQG
Sbjct: 474 --KHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGD 509
|
Length = 529 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 1e-17
Identities = 61/257 (23%), Positives = 126/257 (49%), Gaps = 34/257 (13%)
Query: 344 EIEFRDVYFCYPSR-PDTL-VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVE 401
+I+ +++ + + P L L +++ + G+ + ++G +GSGK+T I L P
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 402 GEV-----------------------LLDGYKIRRL-HLKWLRSQMGLVNQ--EPVLFAT 435
G + ++ + +++ +K +R ++G+V Q E LF
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121
Query: 436 SITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIA 495
+I ++I+FG + A K A + + L + Y + + F++SGGQK+R+A+A
Sbjct: 122 TIEKDIIFGPVSMGVSKE-EAKKRAAKYIELVGLDESY---LQRSPFELSGGQKRRVALA 177
Query: 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK-GRTTLIIAHRL-STIRTANLIMV 553
L +P L+ DE T+ LD Q + + E D ++K G+T +++ H L + + +
Sbjct: 178 GILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIF 237
Query: 554 LKAGKVVESGSHNELMN 570
K GK+++ G ++++
Sbjct: 238 FKDGKIIKDGDTYDILS 254
|
Length = 305 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 1e-17
Identities = 63/236 (26%), Positives = 111/236 (47%), Gaps = 30/236 (12%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
++L +V A TR L LS ++ AG+ + LVG +G GKST++ + GS+
Sbjct: 4 MQLNDV--AESTR-----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSI 55
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPT-LFAGTIRENIA-YGKADARESEIKKAAVLANA 1126
Q + ++ +L H A +SQ+ T FA + + + R +
Sbjct: 56 QFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELL--------- 106
Query: 1127 HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILK-----NPS--ILLLDEATSALD 1179
++G D G QLSGG+ QR+ LA +L+ NP+ +LLLDE ++LD
Sbjct: 107 -NDVAGAL-ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD 164
Query: 1180 SVSESLVQEALEKM-MMGRTCVVVAHRLS-TIQKSDTIAVIKNGRVVEQGSHNELV 1233
+S + L + G V+ +H L+ T++ + ++K G+++ G E++
Sbjct: 165 VAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 2e-17
Identities = 62/217 (28%), Positives = 109/217 (50%), Gaps = 3/217 (1%)
Query: 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
G+++++ + Y T + +L+ LS +E G+ V L+G++G GKST++ L R +G
Sbjct: 1216 GQMDVQGLTAKY-TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLST-EG 1273
Query: 1067 SVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANA 1126
+ +D + L+ R ++ Q+ +F+GT R+N+ + EI K A
Sbjct: 1274 EIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLD-PYEQWSDEEIWKVAEEVGL 1332
Query: 1127 HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
I D D + G LS G KQ + LAR+IL ILLLDE ++ LD V+ ++
Sbjct: 1333 KSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII 1392
Query: 1187 QEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRV 1223
++ L++ T ++ HR+ + + VI+ V
Sbjct: 1393 RKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSV 1429
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-17
Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 32/219 (14%)
Query: 1024 QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL 1083
Q + +SL + L+G +G GKST++ ++ P G + D + K L
Sbjct: 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG---HPWTRKDL 69
Query: 1084 RSHIALVSQEPTLFAGTIRENIAY-----GKADARESEIKKAAVLANAHEFISGMKDGYD 1138
+L+ P T REN+ G D+R E+ L N +G K
Sbjct: 70 HKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTN-----TGKK---- 120
Query: 1139 TYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--- 1195
+ Q S G KQR+ +A A+L +P +L+LDE T+ LD + +QE L +++
Sbjct: 121 -----KAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG---IQE-LRELIRSFP 171
Query: 1196 --GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNE 1231
G T ++ +H LS +Q+ +D I +I G + QG N+
Sbjct: 172 EQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 2e-17
Identities = 77/241 (31%), Positives = 117/241 (48%), Gaps = 44/241 (18%)
Query: 1011 LKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFM 1070
L+NV AY D +I K ++L I G+ V VG SGCGKST++ ++ D G +F+
Sbjct: 6 LRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI 62
Query: 1071 DEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGK--ADARESEIKK-----AAV 1122
E+ R ++ + +V Q L+ ++ EN+++G A A++ EI + A V
Sbjct: 63 GEK--RMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEV 120
Query: 1123 LANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVS 1182
L AH K LSGGQ+QR+A+ R ++ PS+ LLDE S LD+
Sbjct: 121 LQLAHLLDRKPKA------------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-- 166
Query: 1183 ESLVQEALEKMM----------MGRTCVVVAH-RLSTIQKSDTIAVIKNGRVVEQGSHNE 1231
AL M +GRT + V H ++ + +D I V+ GRV + G E
Sbjct: 167 ------ALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220
Query: 1232 L 1232
L
Sbjct: 221 L 221
|
Length = 369 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 3e-17
Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 19/206 (9%)
Query: 1030 LSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDI----RNYNLKQLRS 1085
+ + A AL G SG GK+++I ++ P +G + ++ + + + L +
Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76
Query: 1086 HIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGER 1144
I V Q+ LF T+R N+ YG + ++ + L I + D Y
Sbjct: 77 RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLG----IEHLLDRYPG----- 127
Query: 1145 GVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVV 1202
LSGG+KQR+A+ RA+L P +LL+DE ++LD + + LE++ + + V
Sbjct: 128 --TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV 185
Query: 1203 AHRLSTI-QKSDTIAVIKNGRVVEQG 1227
+H L + + +D + V++NG+V G
Sbjct: 186 SHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 3e-17
Identities = 62/241 (25%), Positives = 102/241 (42%), Gaps = 52/241 (21%)
Query: 1006 RGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLK 1065
++ + + LK +S ++ G+ + L+G++G GKST++ LL Y P
Sbjct: 17 SSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS 76
Query: 1066 GSVFMDEQDIRNYNLKQLRSHIAL-VSQEPTLFAGTIRENI-----AYGK----ADARES 1115
G+V +R ++ S + L P L T RENI G D +
Sbjct: 77 GTV-----TVRG----RVSSLLGLGGGFNPEL---TGRENIYLNGRLLGLSRKEIDEKID 124
Query: 1116 EIKKAAVLANAHEFISGMKDGYD----TYCGERGVQLSGGQKQRIALARAILKNPSILLL 1171
EI EF S + D D TY S G K R+A A A P ILL+
Sbjct: 125 EI---------IEF-SELGDFIDLPVKTY--------SSGMKARLAFAIATALEPDILLI 166
Query: 1172 DEATSALDSVSESLVQEALEKMM----MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQ 1226
DE + D + ++ ++ G+T ++V+H S+I++ D V++ G++
Sbjct: 167 DEVLAVGD---AAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFD 223
Query: 1227 G 1227
G
Sbjct: 224 G 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 3e-17
Identities = 70/266 (26%), Positives = 126/266 (47%), Gaps = 48/266 (18%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERF--YDPLKG 1066
IE+KN+ + + +LK +S IE G+ + ++G+SG GKS ++ +L Y+P G
Sbjct: 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57
Query: 1067 SVF----------------------------MDEQDIRNYNL-----KQLRSHIALVSQE 1093
+ ++ +++ +NL +++R IA++ Q
Sbjct: 58 RIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQR 117
Query: 1094 PTLFAG--TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGG 1151
G T+ +N+ + E K+A + A + I ++ + R LSGG
Sbjct: 118 TFALYGDDTVLDNVLEALEEI-GYEGKEA--VGRAVDLIEMVQLSHRITHIAR--DLSGG 172
Query: 1152 QKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTI 1209
+KQR+ LAR + K P + L DE T LD + LV ALE+ + G + V+ +H I
Sbjct: 173 EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232
Query: 1210 QKSDTIAV-IKNGRVVEQGSHNELVA 1234
+ A+ ++NG + E+G+ +E+VA
Sbjct: 233 EDLSDKAIWLENGEIKEEGTPDEVVA 258
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 4e-17
Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 18/232 (7%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
I+ +NV Y D++++ GLS ++ G+ L+G +G GK+T + +L P GS+
Sbjct: 8 IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTL---FAGTIRENI-AYGKADARESEIKKAAVLA 1124
+ + + + + R + +V Q L F T+REN+ +G+ + +A V
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDF--TVRENLLVFGRYFGLSAAAARALV-P 120
Query: 1125 NAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSES 1184
EF + +++ D GE LSGG K+R+ LARA++ +P +L+LDE T+ LD +
Sbjct: 121 PLLEF-AKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARH 175
Query: 1185 LVQEALEKMMM-GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
L+ E L ++ G+T ++ H + ++ D + VI+ GR + +G+ + L+
Sbjct: 176 LMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227
|
Length = 306 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 4e-17
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 46/216 (21%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPLKGSVFMDEQDIRNYNL- 1080
ILKG++L I+ G+ AL+G +G GKST I+G + Y+ +G + +DI +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK--YEVTEGEILFKGEDITDLPPE 72
Query: 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTY 1140
++ R I L Q P G +K A +F+ + +G
Sbjct: 73 ERARLGIFLAFQYPPEIPG-----------------VKNA-------DFLRYVNEG---- 104
Query: 1141 CGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTC 1199
SGG+K+R + + +L P + +LDE S LD + LV E + K+ G++
Sbjct: 105 -------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSV 157
Query: 1200 VVVAH--RLSTIQKSDTIAVIKNGRVVEQGSHNELV 1233
+++ H RL K D + V+ +GR+V+ G EL
Sbjct: 158 LIITHYQRLLDYIKPDRVHVLYDGRIVKSGD-KELA 192
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 4e-17
Identities = 54/186 (29%), Positives = 102/186 (54%), Gaps = 14/186 (7%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+++ +++ Y +P L+ ++L +E+G+ + ++G SGCGK+T++ L+ F GS+
Sbjct: 2 LQISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFA-GTIRENIAYGKADARESEIKKAAVLANAH 1127
+D + + ++ +V Q L +++N+A+G + + ++K L AH
Sbjct: 59 TLDGKPVEGPGAER-----GVVFQNEGLLPWRNVQDNVAFG---LQLAGVEKMQRLEIAH 110
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
+ + K G + QLSGGQ+QR+ +ARA+ NP +LLLDE ALD+ + +Q
Sbjct: 111 QMLK--KVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQ 168
Query: 1188 EALEKM 1193
L K+
Sbjct: 169 TLLLKL 174
|
Length = 255 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 4e-17
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 12/162 (7%)
Query: 1022 PDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP---LKGSVFMDEQDIRNY 1078
P +L ++ I G+ V L+G SGCGKST++ + G ++++EQ +
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM- 71
Query: 1079 NLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGY 1137
L + I ++ Q+ LF ++ +N+ + + ++ A A SG+ +
Sbjct: 72 -LPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALER--SGLDGAF 128
Query: 1138 DTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD 1179
LSGGQ+ R+AL RA+L P LLLDE S LD
Sbjct: 129 HQDPA----TLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 5e-17
Identities = 66/231 (28%), Positives = 116/231 (50%), Gaps = 13/231 (5%)
Query: 345 IEFRDVYFCYPSRPDTL-VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403
+E +D+ YPS + + VL+G++L + AG+ V +VG SGSGKST + +L P G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 404 VLLDGYKIRRLHLKWL----RSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAK 458
+ G + L L R G + Q L + + +N+ + A + +
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNV---EVPAVYAGLERKQR 121
Query: 459 AANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS 518
A + + +L G E +V Q+SGGQ+QR++IARAL+ +++L DE T ALD+ S
Sbjct: 122 LLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
Query: 519 ERIVQEAIDKV-SKGRTTLIIAHRLSTIRTANLIMVLKAGKVV-ESGSHNE 567
V + ++ +G T +I+ H A ++ ++ G++V + +
Sbjct: 180 GEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEK 230
|
Length = 648 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 6e-17
Identities = 66/224 (29%), Positives = 112/224 (50%), Gaps = 35/224 (15%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYK----------- 410
L + L P G+++ L+G SG+GKS+ + +L P G + + G
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76
Query: 411 IRRLHLKWLRSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKA---ANAHDFI 466
IR L R +G+V Q+ L+ ++ +N++ A V+ +K A A +
Sbjct: 77 IREL-----RRNVGMVFQQYNLWPHLTVQQNLI----EAPCR-VLGLSKDQALARAEKLL 126
Query: 467 TKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD----AQSERIV 522
+L + + +SGGQ+QR+AIARAL+ +P++LL DE T+ALD AQ I+
Sbjct: 127 ERLR--LKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184
Query: 523 QEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSH 565
+E + G T +I+ H + R TA+ ++ ++ G +VE G
Sbjct: 185 RELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225
|
Length = 242 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 6e-17
Identities = 58/212 (27%), Positives = 97/212 (45%), Gaps = 18/212 (8%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS 1085
I+ G+ + G L+G +G GKST++ LL P G+V + D+ + +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 1086 HIALVSQE-PTLFAGTIRENIAYGKADARE---SEIKKAAVLANAHEFISGMKD----GY 1137
+ALV Q+ T T+R+ +A G+ R + A + + + +
Sbjct: 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM 135
Query: 1138 DTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGR 1197
T LSGG++QR+ +ARA+ + P +LLLDE T+ LD ++ + ++
Sbjct: 136 ST--------LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATG 187
Query: 1198 TCVVVA-HRLS-TIQKSDTIAVIKNGRVVEQG 1227
VV A H L+ D + V+ GRVV G
Sbjct: 188 VTVVAALHDLNLAASYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (202), Expect = 6e-17
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 23/221 (10%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRS 421
V + L + +P G ++G +G GKST + L R P G V LDG I+ K +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 422 QMGLVNQEPVLFATSITENI----------LFGKDGASMDDVISAAKAANAHDFITKLPD 471
++GL+ Q + + LF + ++ ++ A A IT L
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATG---ITHL-- 136
Query: 472 GYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS- 530
Q +SGGQ+QR IA L ++ I+LLDE T+ LD + + E + +++
Sbjct: 137 -----ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNR 191
Query: 531 -KGRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELM 569
KG T + H L+ R A+ ++ L+ GK+V G+ E++
Sbjct: 192 EKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232
|
Length = 265 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 7e-17
Identities = 57/211 (27%), Positives = 104/211 (49%), Gaps = 24/211 (11%)
Query: 378 LVGGSGSGKSTTI----ALLQRFYDPVEGEVLLDGYKIRRLH------------LKWLRS 421
++G SGSGKST + L++ Y ++ + G K K LR
Sbjct: 57 IIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRR 116
Query: 422 QMGLVNQEP--VLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQ 479
++ +V Q P LF +I ++I+FG + + A ++ K+ + + +
Sbjct: 117 RVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKF---YLNKMGLDD-SYLER 172
Query: 480 LGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAI-DKVSKGRTTLII 538
F +SGGQK+R+AIA L P+IL+ DE T+ LD + E + + I D + +T +I
Sbjct: 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVI 232
Query: 539 AHRLSTI-RTANLIMVLKAGKVVESGSHNEL 568
H + + A+ ++V+ GK++++G+ E+
Sbjct: 233 THTMEHVLEVADEVIVMDKGKILKTGTPYEI 263
|
Length = 320 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (202), Expect = 8e-17
Identities = 61/235 (25%), Positives = 123/235 (52%), Gaps = 14/235 (5%)
Query: 345 IEFRDVYFCY-PSRP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402
I+F V + Y P+ P + L ++L V G L+G +GSGKST + L P EG
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 403 EVLLDGYKI----RRLHLKWLRSQMGLVNQEP--VLFATSITENILFGKDGASMDDVISA 456
+V + + ++ +K +R ++G+V Q P LF ++ +++ FG + +
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 457 AKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDA 516
AA + + + +E F++SGGQ +R+AIA L +P++L+LDE T+ LD
Sbjct: 122 KIAAEKLEMVGLADEFWEKS----PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177
Query: 517 QSERIVQEAIDKVSK-GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELM 569
++ + + + + + G+T +++ H + + A+ + +L+ G ++ G+ +++
Sbjct: 178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232
|
Length = 288 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 8e-17
Identities = 70/246 (28%), Positives = 116/246 (47%), Gaps = 36/246 (14%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKS----TIIGLLERF 1060
M +IEL+N+ Q ++ G+SL ++ G+ +ALVG SG GKS +G+L
Sbjct: 1 MPQQIELRNIALQ----AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAG 56
Query: 1061 YDPLKGSVFMDEQDIRNYNLKQLRS-HIALVSQEP--------TLFAGTIRENIAYGKA- 1110
G V +D + + LR IA + Q P T+ +A GK
Sbjct: 57 VRQTAGRVLLDGKPV---APCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPA 113
Query: 1111 -DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSIL 1169
DA + +A L NA + Y ++SGG QR+ +A A+L +
Sbjct: 114 DDATLTAALEAVGLENAARVL-------KLY----PFEMSGGMLQRMMIALALLCEAPFI 162
Query: 1170 LLDEATSALDSVSESLVQEALEKMMMGRT--CVVVAHRLSTIQK-SDTIAVIKNGRVVEQ 1226
+ DE T+ LD V+++ + + LE ++ R ++V H + + + +D +AV+ +GR+VEQ
Sbjct: 163 IADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQ 222
Query: 1227 GSHNEL 1232
G L
Sbjct: 223 GDVETL 228
|
Length = 254 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 9e-17
Identities = 71/238 (29%), Positives = 119/238 (50%), Gaps = 42/238 (17%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKS-TTIALLQRFYDPV----EGEVLLDGYKIRR 413
++G++ + AG+++ LVG SGSGKS T +++L P G +L DG +
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81
Query: 414 LHLKWLR----SQMGLVNQEPVLFATSITENILFGKDGASMDDVIS-----AAKAANAHD 464
+ LR +++G++ QEP+ TS+ N L G + +V+ + AA A
Sbjct: 82 ASERQLRGVRGNKIGMIFQEPM---TSL--NPLH-TIGKQLAEVLRLHRGLSRAAARAR- 134
Query: 465 FITKLPDGYETQVG---------QLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD 515
+L + VG ++SGGQ+QR+ IA AL +P +L+ DE T+ALD
Sbjct: 135 -ALELLE----LVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
Query: 516 ----AQSERIVQEAIDKVSKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNEL 568
AQ +++E + G L I H L +R A+ + V++ G++VE+G+ L
Sbjct: 190 VTVQAQILDLLKELQAE--LGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETL 245
|
Length = 534 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 9e-17
Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 21/215 (9%)
Query: 361 LVLQGLNLRVPAGKSVGLVGGSGSGKST---TIALLQRFYDPVEGEVLLDGYKIRRLHLK 417
+L ++L V +G+ + ++G SGSGK+T I+ G++L +G + +
Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP--DQ 78
Query: 418 WLRSQMGLVNQEPVLFATSIT--ENILFG---KDGASMDDVISAAKAANAHDFITKLPDG 472
+ + + V Q+ + +T E + + + D I + L D
Sbjct: 79 FQKC-VAYVRQDDI-LLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE-----DVLLRDL 131
Query: 473 YETQVG-QLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE-RIVQEAIDKVS 530
T++G L +SGG+++R++IA L+ DPK+L+LDE TS LD+ + +V
Sbjct: 132 ALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR 191
Query: 531 KGRTTLIIAH--RLSTIRTANLIMVLKAGKVVESG 563
+ R ++ H R R + I++L +G++V SG
Sbjct: 192 RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 9e-17
Identities = 98/439 (22%), Positives = 169/439 (38%), Gaps = 63/439 (14%)
Query: 148 LAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIES------- 200
L S LS LT+++IV + G ++M + K + +
Sbjct: 128 LVQAIILTLG---SAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDK 184
Query: 201 ----YG-VAGGIAEQAVSSIRTVYSYVAE----------HETLIRFSNALQKTMELGIKQ 245
Y + G E ++ R Y + H + L
Sbjct: 185 LQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVN------- 237
Query: 246 GFIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGL-SVLGALPN 304
+ +L+G +G+++ W + + V + + L S +G LP
Sbjct: 238 -WSNIMLLGLIGLVFWLALSLGWASTNVAA--------TIVLVLLFLRTPLLSAVGILPT 288
Query: 305 LTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQ 364
L A+VA +I ++ D +A + +E R+V F Y + +
Sbjct: 289 LL---TAQVAFNKIAKLELAPYK--ADFPRPQAFPDWKT-LELRNVRFAYQ--DNAFHVG 340
Query: 365 GLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424
+NL + G+ V L+GG+GSGKST LL Y P GE+LLDG + L+ R
Sbjct: 341 PINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFS 400
Query: 425 LVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQM 484
V + LF L G +G + +I T L DG + + ++
Sbjct: 401 AVFSDYHLFDQ------LLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNL-----KL 449
Query: 485 SGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAI--DKVSKGRTTLIIAHRL 542
S GQK+R+A+ AL+ + IL+LDE + D R + + +G+T I+H
Sbjct: 450 STGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD 509
Query: 543 STIRTANLIMVLKAGKVVE 561
A+ ++ ++ G++ E
Sbjct: 510 HYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 1e-16
Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 48/243 (19%)
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKS-TIIGLLERFYDP----LKGSVFMDEQDIRN 1077
+ ++ +SL+IEAG+T+ALVG+SG GKS T + +L P G + + + +
Sbjct: 21 VRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH 80
Query: 1078 YNLKQLR----SHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGM 1133
+ + LR + IA++ QEP + + + E + VL+ H GM
Sbjct: 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPL-HTL----------EKQLYEVLS-LHR---GM 125
Query: 1134 KD----GYDTYCGER-GV------------QLSGGQKQRIALARAILKNPSILLLDEATS 1176
+ G C +R G+ QLSGG++QR+ +A A+L P +L+ DE T+
Sbjct: 126 RREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTT 185
Query: 1177 ALD-SVSE---SLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNE 1231
ALD SV L++E +++ MG + + H LS ++K +D +AV++NGR VEQ
Sbjct: 186 ALDVSVQAQILQLLRELQQELNMG--LLFITHNLSIVRKLADRVAVMQNGRCVEQNRAAT 243
Query: 1232 LVA 1234
L +
Sbjct: 244 LFS 246
|
Length = 529 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 1e-16
Identities = 69/231 (29%), Positives = 119/231 (51%), Gaps = 25/231 (10%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
I+ V Y + V+ GL+ V +G+ GL+G +G+GKST ++ P G++
Sbjct: 42 IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 405 LLDGYKI-RRLHLKWLRSQMGLVNQEPVL-FATSITENIL-----FGKDGASMDDVISAA 457
+ G + R L R+++G+V Q L ++ EN+L FG ++ VI +
Sbjct: 99 TVLGVPVPARARLA--RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSL 156
Query: 458 KAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ 517
+F +L + +V L SGG K+R+ +ARALI DP++L+LDE T+ LD
Sbjct: 157 L-----EF-ARLESKADARVSDL----SGGMKRRLTLARALINDPQLLILDEPTTGLDPH 206
Query: 518 SERIVQEAIDK-VSKGRTTLIIAHRLSTI-RTANLIMVLKAG-KVVESGSH 565
+ ++ E + +++G+T L+ H + R + + VL+AG K+ E H
Sbjct: 207 ARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPH 257
|
Length = 340 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 1e-16
Identities = 53/208 (25%), Positives = 101/208 (48%), Gaps = 13/208 (6%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDG---YKIRRLHLKW 418
L+G++ + G+ VG +G +G+GK+TT+ +L P GEV + G +K R+ L+
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRR 95
Query: 419 LRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVG 478
+ G Q + + + ++ + + + + L + +T V
Sbjct: 96 IGVVFGQKTQ--LWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELL-DLEELLDTPVR 152
Query: 479 QLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGR--TTL 536
QL S GQ+ R IA AL+ +P+IL LDE T LD ++ ++ + + ++ R T L
Sbjct: 153 QL----SLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVL 208
Query: 537 IIAHRLSTI-RTANLIMVLKAGKVVESG 563
+ +H + I A ++V+ G+++ G
Sbjct: 209 LTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 2e-16
Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 28/229 (12%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTII----GLL---------ERFY-----DPLKGS 1067
L +S E K ++G SG GKST++ GL+ Y + +
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEP--TLFAGTIRENIAYGKADARESEIKKAAVLAN 1125
+ I+N+ K+LR +++V Q P LF TI ++I +G + + A LA
Sbjct: 101 TNPYSKKIKNF--KELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSE-AKKLAK 157
Query: 1126 AHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSES- 1184
+ G+ D +Y LSGGQK+R+A+A + P IL+ DE T+ LD E
Sbjct: 158 FYLNKMGLDD---SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHE 214
Query: 1185 LVQEALEKMMMGRTCVVVAHRLSTI-QKSDTIAVIKNGRVVEQGSHNEL 1232
++Q L+ +T V+ H + + + +D + V+ G++++ G+ E+
Sbjct: 215 MMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEI 263
|
Length = 320 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 29/179 (16%)
Query: 357 RPDTLVLQGLNLRVPAGKSVGLVGGSGSGKST---TIALLQRFYDPVEGEVLLDGYKIRR 413
R ++ GL+ + AG+++ L G +GSGK+T IA L P G + LDG I
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDI-- 66
Query: 414 LHLKWLRSQM---GLVNQ-EPVLFATSITENILFGKD--GASMDDVISAAKAANAHDFIT 467
+ G N +P L ++ EN+ F G D+ +A +A +
Sbjct: 67 -DDPDVAEACHYLGHRNAMKPAL---TVAENLEFWAAFLGGEELDIAAALEAVGLAP-LA 121
Query: 468 KLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAI 526
LP GY +S GQK+R+A+AR L+ + I +LDE T+ALDA + + E I
Sbjct: 122 HLPFGY----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELI 170
|
Length = 207 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 2e-16
Identities = 58/171 (33%), Positives = 85/171 (49%), Gaps = 34/171 (19%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ--- 1082
IL G+ L ++ G+T+AL+G+SG GKST++ +L D G V + Q + + +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 1083 LRS-HIALVSQE----PTLFAGTIRENIAY-----GKADARESEIKKAAVLANAHEFISG 1132
LR+ H+ V Q PTL A EN+ G++ R+S A+L G
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNA---LENVELPALLRGESS-RQSRNGAKALLEQL-----G 135
Query: 1133 MKDGYDTYCGER----GVQLSGGQKQRIALARAILKNPSILLLDEATSALD 1179
+ G+R QLSGG++QR+ALARA P +L DE T LD
Sbjct: 136 L--------GKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 3e-16
Identities = 65/217 (29%), Positives = 111/217 (51%), Gaps = 22/217 (10%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV-LLDGYKIRRLHLK 417
D +V+ L+ + G+ GL+G +G+GKST +L P G++ +L R L
Sbjct: 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLA 75
Query: 418 WLRSQMGLVNQEPVL-FATSITENIL-----FGKDGASMDDVISAAKAANAHDFITKLPD 471
R +G+V Q L ++ EN+L FG ++ VI + +F +L
Sbjct: 76 --RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLL-----EF-ARLES 127
Query: 472 GYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDK-VS 530
+ +V L SGG K+R+ +ARALI DP++L+LDE T+ LD + ++ E + ++
Sbjct: 128 KADVRVALL----SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA 183
Query: 531 KGRTTLIIAHRLSTI-RTANLIMVLKAG-KVVESGSH 565
+G+T L+ H + R + + VL++G K+ E H
Sbjct: 184 RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPH 220
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 3e-16
Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 30/182 (16%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTI---IGLLERFYDPLK 1065
++L+ V +Y ++KG+ L + G+ + LVG SGCGKST+ + LER
Sbjct: 4 LKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITS--- 58
Query: 1066 GSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYG-------KADARESEI 1117
G +++ + + L+ IA+V Q L+ ++REN+AYG KA+ E +
Sbjct: 59 GEIWIGGRVVNE--LEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAE-IEERV 115
Query: 1118 KKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSA 1177
+AA + + + D + +LSGGQ+QR+A+ RAI++ P++ L DE S
Sbjct: 116 AEAARILE----LEPLLD-------RKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSN 164
Query: 1178 LD 1179
LD
Sbjct: 165 LD 166
|
Length = 356 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 3e-16
Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 30/227 (13%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP----LKGSVFMDEQDIRNYNLK 1081
+LK +S + G+ +A++G SG GK+T++ L F P GSV ++ I + K
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPI---DAK 95
Query: 1082 QLRSHIALVSQE----PTLFAGTIRENI---AYGKADARES-EIKKAAVLANAHEFIS-- 1131
++R+ A V Q+ PTL T+RE++ A+ + R + + K+ V E +
Sbjct: 96 EMRAISAYVQQDDLFIPTL---TVREHLMFQAHLRMPRRVTKKEKRERV----DEVLQAL 148
Query: 1132 GMKDGYDTYCGERGVQ--LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEA 1189
G++ +T G G LSGG+++R+A A +L +P +L DE TS LDS V +
Sbjct: 149 GLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQV 208
Query: 1190 LEKMMM-GRTCVVVAHRLST--IQKSDTIAVIKNGRVVEQGSHNELV 1233
L+ + G+T + H+ S+ + D I ++ GRV GS ++ V
Sbjct: 209 LKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (196), Expect = 3e-16
Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 31/231 (13%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFY---DPVEGEVLLDGYKIR------- 412
L ++L + G+ V L+G SGSGKST + L + L G ++
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 413 -----RLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGAS-----MDDVISAAKAANA 462
R + ++ Q LVN+ VL EN+L G G++ + + A
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVL------ENVLIGALGSTPFWRTCFSWFTREQKQRA 133
Query: 463 HDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIV 522
+T++ G Q +SGGQ+QR+AIARAL++ K++L DE ++LD +S RIV
Sbjct: 134 LQALTRV--GMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIV 191
Query: 523 QEAIDKVSK--GRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELMN 570
+ + +++ G T ++ H++ +R I+ L+ G V GS + N
Sbjct: 192 MDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDN 242
|
Length = 262 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (197), Expect = 4e-16
Identities = 66/240 (27%), Positives = 111/240 (46%), Gaps = 16/240 (6%)
Query: 1007 GRIELKNVFFAYPTRP--DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
I L NV + Y + + L SL + K ++G +G GKST+I L
Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 1065 KGSVFMDEQDI-----RNYNLKQLRSHIALVSQEP--TLFAGTIRENIAYGKADARESEI 1117
G + + I + +K+LR I LV Q P LF TI ++IA+G + E++
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124
Query: 1118 KKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSA 1177
+ + + + +D Y +LSGGQK+R+ALA I + + L+LDE T
Sbjct: 125 EAYKKVPELLKLVQLPED----YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180
Query: 1178 LDSVSESLVQEALEKM--MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
LD E E++ + ++V H + + + +D + V+ G+V+ GS E+ +
Sbjct: 181 LDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240
|
Length = 289 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 4e-16
Identities = 61/200 (30%), Positives = 87/200 (43%), Gaps = 36/200 (18%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHL-KWL- 419
VL+ ++L V AG+ V L G SG+GKST + L Y P G +I H W+
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSG-------RILVRHEGAWVD 75
Query: 420 -------------RSQMGLVNQ----EPVLFATSITENILFGKDGASMDDVISAAKAANA 462
R +G V+Q P + A + L + G + + A+ A
Sbjct: 76 LAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLL-ERGVPREAARARARELLA 134
Query: 463 HDFIT-KLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERI 521
I +L SGG++QR+ IAR I D ILLLDE T++LDA + ++
Sbjct: 135 RLNIPERLWHLPPAT-------FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQV 187
Query: 522 VQEAIDKVSKGRTTLI-IAH 540
V E I + LI I H
Sbjct: 188 VVELIAEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 5e-16
Identities = 62/181 (34%), Positives = 93/181 (51%), Gaps = 11/181 (6%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ 422
L+G+NL + G+ + L+G SG GKST + L+ P G V+L+G +I +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----PDR 56
Query: 423 MGLVNQEPVLFATSITENILFGKDGASMDDVISAAKA-ANAHDFITKLPDGYETQVGQLG 481
M + +L ++ ENI D D S +A H + L + + + GQL
Sbjct: 57 MVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQL- 115
Query: 482 FQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIA 539
SGG KQR+AIARAL PK+LLLDE ALDA + +QE + ++ + T L++
Sbjct: 116 ---SGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVT 172
Query: 540 H 540
H
Sbjct: 173 H 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.8 bits (196), Expect = 6e-16
Identities = 58/234 (24%), Positives = 118/234 (50%), Gaps = 14/234 (5%)
Query: 1009 IELKNVFFAY-PTRP-DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
I+ + V + Y P P L + L+++ G AL+G +G GKST++ L P +G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 1067 SVFMDEQDI----RNYNLKQLRSHIALVSQEP--TLFAGTIRENIAYGKADARESEIKKA 1120
V + + + + +K +R + +V Q P LF T+ +++A+G + + K
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 1121 AVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS 1180
+ A E + + ++ + +LSGGQ +R+A+A + P +L+LDE T+ LD
Sbjct: 122 KIAAEKLEMVGLADEFWE----KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177
Query: 1181 VSESLVQEALEKM-MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
+ + + E + G+T V+V H + + +D + +++ G ++ G+ +++
Sbjct: 178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
Length = 288 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 6e-16
Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 34/238 (14%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTII----GLLERFYDPL 1064
++L +V A TR L LS ++ AG+ + LVG +G GKST++ GLL P
Sbjct: 1 MQLNDV--AVSTR-----LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-----PG 48
Query: 1065 KGSVFMDEQDIRNYNLKQLRSHIA-LVSQEPTLFAGTIRENIAYGKADARESEIKKAAVL 1123
GS+ Q + ++ +L H A L Q+ FA + + + + D +E +A+
Sbjct: 49 SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALN 108
Query: 1124 ANAHEFISGMKDGYDTYCGERGV-QLSGGQKQRIALARAILK-----NPS--ILLLDEAT 1175
A K G R V QLSGG+ QR+ LA +L+ NP+ +LLLDE
Sbjct: 109 EVAEALGLDDKLG-------RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPM 161
Query: 1176 SALDSVSESLVQEALEKM-MMGRTCVVVAHRLS-TIQKSDTIAVIKNGRVVEQGSHNE 1231
++LD ++ + L ++ G V+ +H L+ T++ +D + ++K G+++ G +E
Sbjct: 162 NSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDE 219
|
Length = 248 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 8e-16
Identities = 63/247 (25%), Positives = 121/247 (48%), Gaps = 36/247 (14%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW 418
+VL ++L +P G ++G +G+GKST ++++ R GE+ +DG ++ K
Sbjct: 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKE 72
Query: 419 LRSQMGLVNQEPVLFATSIT--ENILFGK-----------DGASMDDVISAAKAANAHDF 465
L ++ ++ QE + +T + + FG+ D +++ I
Sbjct: 73 LAKKLSILKQENH-INSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLH------- 124
Query: 466 ITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD----AQSERI 521
+ L D Y + +SGGQ+QR IA L +D +LLDE + LD Q +I
Sbjct: 125 LEDLSDRYLDE-------LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKI 177
Query: 522 VQEAIDKVSKGRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQM 580
++ D++ G+T +++ H ++ ++ I+ LK GKVV+ GS +E++ E Y M
Sbjct: 178 LRRLADEL--GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIYDM 235
Query: 581 -VELQQM 586
+ ++++
Sbjct: 236 DIPVEEI 242
|
Length = 252 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 8e-16
Identities = 66/219 (30%), Positives = 112/219 (51%), Gaps = 22/219 (10%)
Query: 360 TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL 419
+ +L+G++L VP G+ ++G +G GK+T + L G + LDG I +L
Sbjct: 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHER 72
Query: 420 -RSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAH--DFITKLPDGYET 475
R+ + V Q +F ++ EN+L G ++A + D I +L +
Sbjct: 73 ARAGIAYVPQGREIFPRLTVEENLLTG---------LAALPRRSRKIPDEIYELFPVLKE 123
Query: 476 QVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE---AIDKV--S 530
+G+ G +SGGQ+Q++AIARAL+ PK+LLLDE T + I+++ I ++
Sbjct: 124 MLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPS---IIKDIGRVIRRLRAE 180
Query: 531 KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNEL 568
G L++ L R A+ V++ G+VV SG+ +EL
Sbjct: 181 GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 8e-16
Identities = 63/211 (29%), Positives = 112/211 (53%), Gaps = 26/211 (12%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV---EGEVLLDGYKIRRLHLKWL 419
L ++L+V AG+ V L G +G+GKST + +L Y P EGE++ +G +++ +++
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQASNIRDT 79
Query: 420 -RSQMGLVNQEPVLFAT-SITENILFGKD---GASMDDVISAAKAANAHDFITKL----- 469
R+ + +++QE L S+ ENI G + G MD A A + +L
Sbjct: 80 ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDY---DAMYLRAQKLLAQLKLDIN 136
Query: 470 PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAI-DK 528
P T VG LG GQ+Q + IA+AL + ++L+LDE T++L ++ + I D
Sbjct: 137 PA---TPVGNLG----LGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL 189
Query: 529 VSKGRTTLIIAHRLSTI-RTANLIMVLKAGK 558
+ G + I+H+L+ + ++ I V++ G+
Sbjct: 190 KAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 9e-16
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 13/165 (7%)
Query: 356 SRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH 415
R + GL+ + AG+++ + G +GSGK+T + +L P+ G VLL+G +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 416 LKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYE- 474
R + L + + S+ EN+ F S + V A +G+E
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGL--------NGFED 120
Query: 475 TQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE 519
V QL S GQ++R+A+AR L+ + +LDE T+ALD
Sbjct: 121 RPVAQL----SAGQQRRVALARLLLSGRPLWILDEPTTALDKAGV 161
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 1e-15
Identities = 62/211 (29%), Positives = 110/211 (52%), Gaps = 20/211 (9%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFY--DPVEGEVLLDGYKIRRLHLKWL- 419
L G++L V G+ VGL G +G+GKST + +L Y +GE+ G ++ +++
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 420 RSQMGLVNQEPVLFAT-SITENILFGKD----GASMDDVISAAKAANAHDFI--TKLPDG 472
R+ + +++QE L S+ ENI G + G M A A + + +L
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAY---NAMYLRAKNLLRELQLDAD 133
Query: 473 YETQ-VGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAI-DKVS 530
T+ VG G GGQ+Q + IA+AL + ++L+LDE +S+L + I+ + I D +
Sbjct: 134 NVTRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA 189
Query: 531 KGRTTLIIAHRLSTIRT-ANLIMVLKAGKVV 560
G + I+H+L+ ++ + I V++ G+ V
Sbjct: 190 HGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-15
Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 18/218 (8%)
Query: 356 SRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH 415
DT VL G++L V G VGLVG +G+GK+T + + P G VL+ G + L
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 416 LKWLRSQMGLVNQEPVL-FATSITENILFGK-------DGASMDDVISAAKAANAHDFIT 467
+ ++ V Q+ L F + + + G+ D + D + +A +
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTG-VA 130
Query: 468 KLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE-RIVQEAI 526
+ D T + SGG++QR+ +ARAL + +LLLDE T++LD + R ++
Sbjct: 131 QFADRPVTSL-------SGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVR 183
Query: 527 DKVSKGRTTLIIAHRLS-TIRTANLIMVLKAGKVVESG 563
V G+T + H L R + +++L G+V +G
Sbjct: 184 RLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
Length = 402 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 2e-15
Identities = 59/248 (23%), Positives = 118/248 (47%), Gaps = 34/248 (13%)
Query: 345 IEFRDV--YFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402
I+ R+V + R + ++L V G+ G+VG SG+GK+T ++ +P G
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 403 EV-------LLDGYKIRRLHLKWLRSQMGLVNQEPVLFA-TSITENIL------FGKDGA 448
EV +D K + +G+++QE L+ ++ +N+ + A
Sbjct: 340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELA 399
Query: 449 SMDDVISAAKAA----NAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKI 504
M VI+ A + + K PD ++S G++ R+A+A+ LI++P+I
Sbjct: 400 RMKAVITLKMVGFDEEKAEEILDKYPD-----------ELSEGERHRVALAQVLIKEPRI 448
Query: 505 LLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVE 561
++LDE T +D ++ V +I K + +T +I++H + + + +++ GK+V+
Sbjct: 449 VILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK 508
Query: 562 SGSHNELM 569
G E++
Sbjct: 509 IGDPEEIV 516
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 2e-15
Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 11/183 (6%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW--- 418
+L G+ L V G+++ L+G SGSGKST +A+L D GEV L G + ++ +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 419 LRSQ-MGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQ 476
LR++ +G V Q +L T + EN+ S A + +L G +
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAK---ALLEQL--GLGKR 139
Query: 477 VGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS-ERIVQEAIDKVSKGRTT 535
+ L Q+SGG++QR+A+ARA P +L DE T LD Q+ ++I + TT
Sbjct: 140 LDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTT 199
Query: 536 LII 538
LI+
Sbjct: 200 LIL 202
|
Length = 228 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 2e-15
Identities = 58/206 (28%), Positives = 104/206 (50%), Gaps = 10/206 (4%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFY--DPLKGSVFMDEQDIRNYNLKQL- 1083
L G+ L++ G+ V L G++G GKST++ +L Y G ++ ++ N++
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 1084 RSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKK-AAVLANAHEFISGMKDGYDTYC 1141
R+ I ++ QE TL ++ ENI G A+ A + ++ D
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQ--LDADN 134
Query: 1142 GERGV-QLSGGQKQRIALARAILKNPSILLLDEATSAL-DSVSESLVQEALEKMMMGRTC 1199
R V GGQ+Q + +A+A+ K +L+LDE +S+L + +E L+ + G C
Sbjct: 135 VTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVAC 194
Query: 1200 VVVAHRLSTIQK-SDTIAVIKNGRVV 1224
V ++H+L+ ++ DTI VI++G+ V
Sbjct: 195 VYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 2e-15
Identities = 64/222 (28%), Positives = 112/222 (50%), Gaps = 22/222 (9%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ-LRS 1085
L +S AG+ AL+G++G GKST++ +L Y P GS+ +D Q++R + L +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 1086 HIALVSQE----PTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYC 1141
+A++ QE P + T+ EN+ G+ + + + + A E + + G D
Sbjct: 80 GVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHL--GVDIDP 134
Query: 1142 GERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM-----G 1196
LS GQ+Q + +A+A+ +N ++ DE TS+L S E E L +++ G
Sbjct: 135 DTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSL-SAREI---EQLFRVIRELRAEG 190
Query: 1197 RTCVVVAHRLSTI-QKSDTIAVIKNGRVVEQGSHNELVALSR 1237
R + V+HR+ I D I V K+GR V + +++ + R
Sbjct: 191 RVILYVSHRMEEIFALCDAITVFKDGRYVA--TFDDMAQVDR 230
|
Length = 501 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 3e-15
Identities = 54/228 (23%), Positives = 105/228 (46%), Gaps = 45/228 (19%)
Query: 366 LNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDG-------YKIRRLHLKW 418
++ + G+++ ++G +GSGKST +L +P GE+L++ Y R ++
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 419 L----------RSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITK 468
+ R ++G + P+ T + + + +
Sbjct: 92 IFQDPNTSLNPRLRIGQILDFPLRLNTDLEPE-------QRRKQIFETLR------MVGL 138
Query: 469 LPD--GYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDA----QSERIV 522
LPD Y + ++ GQKQR+A+ARALI PKI++ DEA ++LD Q ++
Sbjct: 139 LPDHANYYPHM------LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLM 192
Query: 523 QEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELM 569
E +K G + + + + I+ ++ ++V+ G+VVE GS +++
Sbjct: 193 LELQEKQ--GISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 3e-15
Identities = 61/234 (26%), Positives = 99/234 (42%), Gaps = 36/234 (15%)
Query: 358 PDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP----VEGEVLLDGYKIRR 413
++ G++L + G+ + LVGGSGSGKS T A G VLLDG +
Sbjct: 14 AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG---KP 70
Query: 414 LHLKWLRSQM-GLVNQ------EPVLFATSITENILFGKDGASMDDVISAAKAANAHDFI 466
+ LR + + Q P+ + + D ++AA A +
Sbjct: 71 VAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA 130
Query: 467 TKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS-------- 518
++ Y F+MSGG QR+ IA AL+ + ++ DE T+ LD +
Sbjct: 131 ARVLKLYP-------FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLL 183
Query: 519 ERIVQEAIDKVSKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNR 571
E IVQ+ + L++ H + + R A+ + V+ G++VE G L N
Sbjct: 184 ESIVQK------RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231
|
Length = 254 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 3e-15
Identities = 53/213 (24%), Positives = 94/213 (44%), Gaps = 26/213 (12%)
Query: 356 SRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIR--- 412
R + + L+ + AG+++ + G +G+GK+T + +L P GEV G I+
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR 70
Query: 413 ---RLHLKWLRSQMGLVNQEPVLFATSITENILFGKD--GASMDDVISAAKAANAHDFIT 467
L +L Q G+ + L + EN+ F + G+ I A
Sbjct: 71 ESYHQALLYLGHQPGI---KTEL---TALENLHFWQRFHGSGNAATIWEA----LAQV-- 118
Query: 468 KLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAID 527
L + VGQL S GQ++R+A+AR + + +LDE +ALD + ++ +
Sbjct: 119 GLAGLEDLPVGQL----SAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMA 174
Query: 528 -KVSKGRTTLIIAHRLSTIRTANLIMV-LKAGK 558
++G L+ H+ I +A + + L A K
Sbjct: 175 AHAAQGGIVLLTTHQPLPIASAQIRRLDLTATK 207
|
Length = 209 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 3e-15
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 34/219 (15%)
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ 1082
D+ + +S ++ G+ L+G +G GK+T ++ +P +G + + + ++
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QE 69
Query: 1083 LRSHIALVSQEPTLFAG-TIRENIAY-------GKADARESEIKKAAVLANAHEFISGMK 1134
+++ I + +E L+ T+ + + Y KA+ + KK E +
Sbjct: 70 IKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ----KKLQAWLERLEIVGKKT 125
Query: 1135 DGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM 1194
LS G +Q+I A++ P +L+LDE S LD V+ E L+ +
Sbjct: 126 KKIKE--------LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVN----VELLKDAI 173
Query: 1195 M-----GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227
G T + +HR+ +++ D + ++K G+ V G
Sbjct: 174 FELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYG 212
|
Length = 300 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 3e-15
Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 12/187 (6%)
Query: 356 SRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH 415
SR + ++ +GL+ + AG+++ + G +G GK+T + +L P GEV +G +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 416 LKWLRSQMGLVNQEPVLFATSITENILF-GKDGASMDDVISAAKAANAHDFITKLPDGYE 474
+ R+ + L + + S EN+ F I A AA LP
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLP---- 124
Query: 475 TQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDK-VSKGR 533
QL S GQ++R+A+AR + + +LDE T+ALD ++ + +++G
Sbjct: 125 --AAQL----SAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGG 178
Query: 534 TTLIIAH 540
L+ H
Sbjct: 179 IVLLTTH 185
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 3e-15
Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 30/230 (13%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKST---TIALLQRFYDPVEGEVLLDG--------YK 410
+L+G+NL V G+ ++G +GSGKST TIA Y+ G +L G +
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPS-YEVTSGTILFKGQDLLELEPDE 73
Query: 411 IRRLHLKWLRSQM-----GLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHD 464
R L +L Q G+ N E + A + G++ + D + KA A
Sbjct: 74 RARAGL-FLAFQYPEEIPGVSNLEFLRSALNARRSA--RGEEPLDLLDFLKLLKAKLA-- 128
Query: 465 FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE 524
+ + + + + GF SGG+K+R I + + +PK+ +LDE S LD + +IV E
Sbjct: 129 -LLGMDEEFLNRSVNEGF--SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185
Query: 525 AIDKV-SKGRTTLIIAH--RLSTIRTANLIMVLKAGKVVESGSHNELMNR 571
I+++ R+ LII H RL + + VL G++V+SG EL
Sbjct: 186 GINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV-ELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 4e-15
Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 20/227 (8%)
Query: 356 SRPDTL-VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL 414
P TL + G+ LR+ G+++G+VG SG GKST + +GEV G + +
Sbjct: 29 QPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGM 88
Query: 415 -HLKWL--RSQMGLVNQEPV-------LFATSITENILFGKDGASMDDVISAAKAANAHD 464
+W RS + ++ Q+P+ I E + S +V KA
Sbjct: 89 KDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLK- 147
Query: 465 FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE 524
+ LP+ + + + SGGQ QRI IARALI +PK+++ DE SALD + V
Sbjct: 148 -VGLLPN----LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVN 202
Query: 525 AIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNEL 568
+ ++ + G + + IAH L+ ++ ++ ++V+ G VE G+++E+
Sbjct: 203 LLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249
|
Length = 331 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 4e-15
Identities = 55/234 (23%), Positives = 100/234 (42%), Gaps = 30/234 (12%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+ + + L+ ++ + G+ VG++G +G+GKST + L+ Y P G+V
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILF-----GKDGASMDDVI-SAAK 458
+ G K+ L + G + ENI G +D+ + +
Sbjct: 85 KVTG-KVAPL----IELGAGFDPELTGR------ENIYLRGLILGLTRKEIDEKVDEIIE 133
Query: 459 AANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ- 517
A DFI + Y S G R+A + A +P ILLLDE + DA
Sbjct: 134 FAELGDFIDQPVKTY-----------SSGMYARLAFSVATHVEPDILLLDEVLAVGDAAF 182
Query: 518 SERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570
E+ ++ + V K +T ++++H L I+ + + L+ G++ GS E++
Sbjct: 183 QEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236
|
Length = 249 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 5e-15
Identities = 59/165 (35%), Positives = 81/165 (49%), Gaps = 22/165 (13%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKST---IIGLLERFYDPLKGSVFMDEQDIRNYNLKQ 1082
+L +SL I +G+ VAL+G SG GK+T II LE G + D+ + +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARD 73
Query: 1083 LRSHIALVSQEPTLFAG-TIRENIAYG-KADARESEIKKAAVLANAHEFI-----SGMKD 1135
+ V Q LF T+ +NIA+G R AA+ A + + + + D
Sbjct: 74 --RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD 131
Query: 1136 GYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS 1180
Y QLSGGQKQR+ALARA+ P ILLLDE ALD+
Sbjct: 132 RYPA-------QLSGGQKQRVALARALAVEPQILLLDEPFGALDA 169
|
Length = 353 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 6e-15
Identities = 55/250 (22%), Positives = 99/250 (39%), Gaps = 33/250 (13%)
Query: 304 NLTAITEAKVAATRIFEMVDRTPAIDTDD----KMGKALSYV---RGEIEFRDVYFCYPS 356
N AI + + R+ E A D + G+ + + I ++ P
Sbjct: 345 NYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPD 404
Query: 357 RPDTLVLQGLNLRVPAGKSVGLVGGSGSGKST---TIALLQRFYDPVEGEVLLDGYKIRR 413
+L LN V G+ + + G SG+GK++ +A L + G +
Sbjct: 405 G--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRI------SMP 453
Query: 414 LHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDD--VISAAKAANAHDFITKLPD 471
L + Q P L ++ E + + D +++ D +L +
Sbjct: 454 ADSALL-----FLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE 508
Query: 472 GYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK 531
+ +SGG++QR+A AR L+ PK + LDEATSALD ++E + + + +
Sbjct: 509 -----EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELP 563
Query: 532 GRTTLIIAHR 541
T + + HR
Sbjct: 564 DATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 7e-15
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 346 EFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVL 405
E ++ F Y R L ++L + AG+ V LVG +GSGKST + + P GE+L
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 406 LDGYKIRRLHLKWLRSQMGLVNQ 428
+DG I +L L+ LR ++G V Q
Sbjct: 58 IDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 9e-15
Identities = 60/215 (27%), Positives = 107/215 (49%), Gaps = 20/215 (9%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDI---RNYNLKQL 1083
L+G++ + G+ L G SG GKST++ L+ P G ++ DI +N + L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 1084 RSHIALVSQEPTLFAG-TIRENIAYGK--ADARESEIKK--AAVLANAHEFISGMKDGYD 1138
R I ++ Q+ L T+ +N+A A A +I++ +A L G+ D
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKV-----GLLDKAK 132
Query: 1139 TYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD-SVSESLVQEALEKMMMGR 1197
+ +QLSGG++QR+ +ARA++ P++LL DE T LD ++SE +++ E +G
Sbjct: 133 NF----PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGV 188
Query: 1198 TCVVVAHRLSTIQKSD-TIAVIKNGRVVEQGSHNE 1231
T ++ H + I + + + +G + G E
Sbjct: 189 TVLMATHDIGLISRRSYRMLTLSDGHLHG-GVGGE 222
|
Length = 222 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-14
Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 22/217 (10%)
Query: 358 PDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLK 417
P L ++ AG+ L+G +G+GKST + +L Y P G +L+DG ++R
Sbjct: 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTT 74
Query: 418 -WLRSQMGLVNQE----PVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKL--- 469
L + + ++ QE P + ++ EN+ G+ V A + + L
Sbjct: 75 AALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD 131
Query: 470 --PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAID 527
PD T + L S GQ+Q + IA+AL R+ +++ DE TS+L A+ + I
Sbjct: 132 IDPD---TPLKYL----SIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIR 184
Query: 528 KV-SKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVES 562
++ ++GR L ++HR+ I + I V K G+ V +
Sbjct: 185 ELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221
|
Length = 501 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 2e-14
Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 35/223 (15%)
Query: 1025 MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLR 1084
+LKG+ + AG+ AL+G +G GKST++ ++ P G++ + L +
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGN--PCARLTPAK 82
Query: 1085 SH---IALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTY 1140
+H I LV QEP LF +++ENI +G + S K +LA
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLA---------------- 126
Query: 1141 CGERGVQLS---------GGQKQRIALARAILKNPSILLLDEATSALDSV-SESLVQEAL 1190
G QL +Q + + R ++++ IL+LDE T++L +E L
Sbjct: 127 --ALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIR 184
Query: 1191 EKMMMGRTCVVVAHRLSTI-QKSDTIAVIKNGRVVEQGSHNEL 1232
E + G V ++H+L I Q +D I+V+++G + G +L
Sbjct: 185 ELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 2e-14
Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 48/225 (21%)
Query: 1030 LSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRN---YNLKQLRSH 1086
+S + G+T++LVG+SG GKST L R + G + + Q I L+ LR
Sbjct: 343 VSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRD 402
Query: 1087 IALVSQEPTLFAG-TIRENIAY-------------GKADARESE-------IKKAAVLAN 1125
I + Q+P +A R+ + GKA A +
Sbjct: 403 IQFIFQDP--YASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY 460
Query: 1126 AHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD-SVSES 1184
HEF SGGQ+QRI +ARA+ NP +++ DEA SALD S+
Sbjct: 461 PHEF-------------------SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQ 501
Query: 1185 LVQEALE-KMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227
++ L+ + G + ++H ++ +++ S +AV+ G++VE G
Sbjct: 502 IINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
Length = 623 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 3e-14
Identities = 61/218 (27%), Positives = 110/218 (50%), Gaps = 22/218 (10%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ-LRS 1085
L +SL I G+ V L+G +G GK+T++G L G + D +DI ++ + +R
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80
Query: 1086 HIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTY--CG 1142
+A+V + +F+ T+ EN+A G A +F +K Y+ +
Sbjct: 81 AVAIVPEGRRVFSRMTVEENLAMG------------GFFAERDQFQERIKWVYELFPRLH 128
Query: 1143 ERGVQ----LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM-GR 1197
ER +Q +SGG++Q +A+ RA++ P +LLLDE + L + + + +E++ G
Sbjct: 129 ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGM 188
Query: 1198 TCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
T +V + K +D V++NG VV + + + L+A
Sbjct: 189 TIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226
|
Length = 237 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 4e-14
Identities = 65/226 (28%), Positives = 110/226 (48%), Gaps = 14/226 (6%)
Query: 347 FRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLL 406
R+V Y D ++ + +NL + G+ V VG SG GKST + ++ D G++ +
Sbjct: 6 LRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI 62
Query: 407 DGYKIRRLHLKWLRSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDF 465
++ + +G+V Q L+ S+ EN+ FG A + +
Sbjct: 63 GEKRMNDVPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAE- 119
Query: 466 ITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEA 525
+ +L + + L SGGQ+QR+AI R L+ +P + LLDE S LDA ++
Sbjct: 120 VLQLAHLLDRKPKAL----SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE 175
Query: 526 IDKVSK--GRTTLIIAH-RLSTIRTANLIMVLKAGKVVESGSHNEL 568
I ++ K GRT + + H ++ + A+ I+VL AG+V + G EL
Sbjct: 176 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
Length = 369 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 4e-14
Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 31/182 (17%)
Query: 1020 TRPDQMILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPLKGSVFMDEQDI 1075
R +++ GLS + AG+ + L G +G GK+T I GLL P G++ +D DI
Sbjct: 11 VRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP----PAAGTIKLDGGDI 66
Query: 1076 RNYNLKQLRSHIALVSQ----EPTLFAGTIRENIAYGKA--DARESEIKKAAVLANAHEF 1129
+ + +P L T+ EN+ + A E +I A
Sbjct: 67 D---DPDVAEACHYLGHRNAMKPAL---TVAENLEFWAAFLGGEELDIAAALEAVGLAP- 119
Query: 1130 ISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEA 1189
++ + GY LS GQK+R+ALAR ++ N I +LDE T+ALD+ + +L E
Sbjct: 120 LAHLPFGY----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAEL 169
Query: 1190 LE 1191
+
Sbjct: 170 IR 171
|
Length = 207 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 4e-14
Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 20/193 (10%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNY---NLKQ 1082
+L +S I G+ +A+VG SG GKST++ LL P G V + Q + +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 1083 LRSH-IALVSQEPTLFAG-TIRENIAY----GKADARESEIKKAAVLANAHEFISGMKDG 1136
LR+ + + Q L T EN+A GK E + A E ++ + G
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSR-------ALEMLAAV--G 134
Query: 1137 YDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM- 1195
+ R +LSGG++QR+A+ARA++ NP ++L DE T LD+ + + + L ++
Sbjct: 135 LEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL 194
Query: 1196 -GRTCVVVAHRLS 1207
G +VV H L
Sbjct: 195 QGTAFLVVTHDLQ 207
|
Length = 233 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 5e-14
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 19/188 (10%)
Query: 1021 RPDQMILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPLKGSVFMDEQDIR 1076
R ++ + LS + AG+ + + G +G GK+T + GLL P G V+ + I+
Sbjct: 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR----PDAGEVYWQGEPIQ 67
Query: 1077 NYNLKQLRSHIALVSQEPTL-FAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKD 1135
N + + + +P + T EN+ + + A + + G+
Sbjct: 68 NVR-ESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGN--AATIWEALAQV--GLAG 122
Query: 1136 GYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM 1195
D G QLS GQ++R+ALAR L + +LDE +ALD +L+ AL
Sbjct: 123 LEDLPVG----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL-TALMAAHA 177
Query: 1196 GRTCVVVA 1203
+ +V+
Sbjct: 178 AQGGIVLL 185
|
Length = 209 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 5e-14
Identities = 69/211 (32%), Positives = 110/211 (52%), Gaps = 34/211 (16%)
Query: 373 GKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL---HLKWLRSQMGLVNQE 429
G+++ LVG SGSGKSTT L R + GE++ +G +I L L+ LR + + Q+
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 430 PVLFAT---------SITE-----NILFGKDGASMDDVISAAKAANAHDFITKLPDGYET 475
P +A+ SI E +L GK +AA+ A + + LP+
Sbjct: 410 P--YASLDPRQTVGDSIMEPLRVHGLLPGKA--------AAARVAWLLERVGLLPE---- 455
Query: 476 QVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ-SERIVQEAID-KVSKGR 533
+ + SGGQ+QRI IARAL +PK+++ DEA SALD +I+ +D + G
Sbjct: 456 HAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGI 515
Query: 534 TTLIIAHRLSTI-RTANLIMVLKAGKVVESG 563
L I+H ++ + R ++ + V+ G++VE G
Sbjct: 516 AYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
Length = 623 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 5e-14
Identities = 76/292 (26%), Positives = 126/292 (43%), Gaps = 47/292 (16%)
Query: 296 LSVLGALPNLTAITEAKVAATRI--FEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFC 353
LS +GALP L + A+VA ++ + + +A + +E R+V F
Sbjct: 280 LSAVGALPTLLS---AQVAFNKLNKLALAPYKA----EFPRPQAFPDWQ-TLELRNVTFA 331
Query: 354 YPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRR 413
Y + +NL + G+ + L+GG+GSGKST LL Y P GE+LLDG +
Sbjct: 332 YQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTA 389
Query: 414 LHLKWLRSQMGLVNQEPVLFATSITENILF----GKDGASMDDVISAAKAANAHDFITKL 469
+ R LF+ T+ LF G +G + + K+
Sbjct: 390 EQPEDYRK----------LFSAVFTDFHLFDQLLGPEGKPANPALVEKWLE-----RLKM 434
Query: 470 PDGYETQVGQL-GFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERI------- 521
E + G++ ++S GQK+R+A+ AL + ILLLDE + D R
Sbjct: 435 AHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLP 494
Query: 522 -VQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVE-SGSHNELMNR 571
+QE G+T I+H A+ ++ ++ G++ E +G + +R
Sbjct: 495 LLQE------MGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDAASR 540
|
Length = 547 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 5e-14
Identities = 64/242 (26%), Positives = 116/242 (47%), Gaps = 36/242 (14%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
++++ V F TR ++ I +SL + GK A++G SG GK+T++ L+ P G +
Sbjct: 8 VDMRGVSF---TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 1069 FMDEQDI---RNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARE-----SEIKK 1119
D ++I L +R ++++ Q LF + +N+AY RE + +
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY---PLREHTQLPAPLLH 121
Query: 1120 AAVLANAHEFISGMKDGYDTYCGERGV------QLSGGQKQRIALARAILKNPSILLLDE 1173
+ V+ MK G RG +LSGG +R ALARAI P +++ DE
Sbjct: 122 STVM---------MKL---EAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDE 169
Query: 1174 ATSALDSVSESLVQEALEKM--MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHN 1230
D ++ ++ + + ++ +G TCVVV+H + + +D ++ + ++V GS
Sbjct: 170 PFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQ 229
Query: 1231 EL 1232
L
Sbjct: 230 AL 231
|
Length = 269 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 6e-14
Identities = 56/195 (28%), Positives = 82/195 (42%), Gaps = 51/195 (26%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQD-------IRNY 1078
+LK +SL + AG+ VAL G SG GKST++ L Y P G + + +
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 1079 NLKQLRSH-IALVSQ---------------EPTLFAGTIRENIAYGKADARESEIKKAAV 1122
+ ++R I VSQ EP L G RE A +A
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPRE-AARARARE---------- 131
Query: 1123 LANAHEFISGMKDGYDTYCGERGVQL-----SGGQKQRIALARAILKNPSILLLDEATSA 1177
A I ER L SGG++QR+ +AR + + ILLLDE T++
Sbjct: 132 -LLARLNIP-----------ERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTAS 179
Query: 1178 LDSVSESLVQEALEK 1192
LD+ + +V E + +
Sbjct: 180 LDAANRQVVVELIAE 194
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 6e-14
Identities = 61/224 (27%), Positives = 114/224 (50%), Gaps = 29/224 (12%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIR--NYNLKQLR 1084
+K LS + G+T+A++G++G GKST+ +L +P G + +D+ + +Y+ + R
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQR 88
Query: 1085 SHIALVSQEPT-----------LFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGM 1133
I ++ Q+P+ + +R N + + RE +I + G+
Sbjct: 89 --IRMIFQDPSTSLNPRQRISQILDFPLRLNTDL-EPEQREKQIIETLRQV-------GL 138
Query: 1134 KDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD-SVSESLVQEALE- 1191
+ +Y L+ GQKQR+ LARA++ P +++ DEA ++LD S+ L+ LE
Sbjct: 139 LPDHASYYPH---MLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLEL 195
Query: 1192 KMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
+ G + + V L ++ SD + V+ G VVE+GS +++A
Sbjct: 196 QEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 9e-14
Identities = 57/193 (29%), Positives = 100/193 (51%), Gaps = 16/193 (8%)
Query: 360 TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW- 418
T VL ++ + G+ + +VG SGSGKST + LL P G+V+ +G + +L
Sbjct: 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAK 81
Query: 419 --LRSQ-MGLVNQ-EPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKL--PDG 472
LR+Q +G + Q +L + EN+ +M +I K A + ++ G
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENV-------AMPLLIGKKKPAEINSRALEMLAAVG 134
Query: 473 YETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDK--VS 530
E + ++SGG++QR+AIARAL+ +P+++L DE T LDA++ + + + +
Sbjct: 135 LEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL 194
Query: 531 KGRTTLIIAHRLS 543
+G L++ H L
Sbjct: 195 QGTAFLVVTHDLQ 207
|
Length = 233 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 1e-13
Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 26/222 (11%)
Query: 1024 QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL 1083
Q L +S + + G+ V +G +G GKST + ++ + P GSV + +D+ +
Sbjct: 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQ 74
Query: 1084 RSHIALVSQEPTLFAGTIRENIA-----YGKADARESE-----IKKAAVLANAHEFISGM 1133
R+ L P +RE + YG + I+ + H+ I
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIG-- 132
Query: 1134 KDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKM 1193
QLS G +QR+ LA+A++ +P +L+LDE T+ LD ++ ++ +
Sbjct: 133 -------------QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI 179
Query: 1194 MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
+T ++ H + ++ D + +I G++V +EL A
Sbjct: 180 GKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 2e-13
Identities = 60/232 (25%), Positives = 110/232 (47%), Gaps = 40/232 (17%)
Query: 1029 GLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPLKGSV-------FMDEQDIRN 1077
+SL+++ G+ +VG SG GK+T I G+LE P G V ++D
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE----PTSGEVNVRVGDEWVDMTKPGP 357
Query: 1078 YNLKQLRSHIALVSQEPTLFA-GTIRENI--AYGKADARESEIKKAAVL--------ANA 1126
+ + +I ++ QE L+ T+ +N+ A G E KA + A
Sbjct: 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKA 417
Query: 1127 HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
E + D +LS G++ R+ALA+ ++K P I++LDE T +D +++ V
Sbjct: 418 EEILDKYPD-----------ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDV 466
Query: 1187 QEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235
++ K M +T ++V+H + + D A++++G++V+ G E+V
Sbjct: 467 THSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 2e-13
Identities = 49/210 (23%), Positives = 109/210 (51%), Gaps = 16/210 (7%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW 418
D + ++ VP G+ GL+G +G+GK+TT ++ +P EGE+ +G + +
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE---- 69
Query: 419 LRSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDFITKLPD--GYET 475
+++++G + +E L+ ++ + + + + M A+ + + G +T
Sbjct: 70 IKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMP----KAEIQKKLQAWLERLEIVGKKT 125
Query: 476 QVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAI-DKVSKGRT 534
+ + ++S G +Q+I A+I +P++L+LDE S LD + ++++AI + +G T
Sbjct: 126 KKIK---ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGAT 182
Query: 535 TLIIAHRLSTI-RTANLIMVLKAGKVVESG 563
+ +HR+ + + +++LK G+ V G
Sbjct: 183 IIFSSHRMEHVEELCDRLLMLKKGQTVLYG 212
|
Length = 300 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 2e-13
Identities = 52/210 (24%), Positives = 101/210 (48%), Gaps = 6/210 (2%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRS 421
L ++ G+ VG +G +G+GKSTT+ ++ + P G V + G + + + R+
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRN 76
Query: 422 QMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLG 481
L P+ + E + F M + + + + P+ ++ ++GQL
Sbjct: 77 IGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-KIGQL- 134
Query: 482 FQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHR 541
S G +QR+ +A+ALI DPK+L+LDE T+ LD ++ I + K +T ++ H
Sbjct: 135 ---SKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHI 191
Query: 542 LSTIRT-ANLIMVLKAGKVVESGSHNELMN 570
+ + + ++++ GK+V +EL
Sbjct: 192 MQEVEAICDRVIIINKGKIVADKKLDELSA 221
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 2e-13
Identities = 71/257 (27%), Positives = 122/257 (47%), Gaps = 18/257 (7%)
Query: 988 RSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSG 1047
R + + +G +IKR + + ++ + R IL G++ G+ +A++G SG
Sbjct: 48 RVKFENMKNKGSNIKRILGHKPKISDETRQIQER---TILNGVTGMASPGEILAVLGPSG 104
Query: 1048 CGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNL-KQLRSHIALVSQEPTLFAG-TIRENI 1105
GKST LL ++G+ F N KQ+ V+Q+ L+ T+RE +
Sbjct: 105 SGKST---LLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETL 161
Query: 1106 AYGKADARESEIKKAAVLANAHEFIS--GMKDGYDTYCGE---RGVQLSGGQKQRIALAR 1160
+ + K + A IS G+ +T G RG+ SGG+++R+++A
Sbjct: 162 VFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGI--SGGERKRVSIAH 219
Query: 1161 AILKNPSILLLDEATSALDSVSE-SLVQEALEKMMMGRTCVVVAHRLST--IQKSDTIAV 1217
+L NPS+L+LDE TS LD+ + LV G+T V H+ S+ Q D++ V
Sbjct: 220 EMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLV 279
Query: 1218 IKNGRVVEQGSHNELVA 1234
+ GR + G ++ +A
Sbjct: 280 LSEGRCLFFGKGSDAMA 296
|
Length = 659 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 3e-13
Identities = 66/236 (27%), Positives = 118/236 (50%), Gaps = 40/236 (16%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFY--DPVE---GEVLLDGYKIRRLH- 415
V+ ++L++ AG+++ LVG SGSGKS T + R PV G++ G + LH
Sbjct: 24 VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESL--LHA 81
Query: 416 ----LKWLR-SQMGLVNQEPV--LFATSITENILF---------GKDGASMDDVISAAKA 459
L+ +R +++ ++ QEP+ L E L+ ++ A+ ++++
Sbjct: 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRRE-AARGEILNCLDR 140
Query: 460 ANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD---- 515
+L D Q+SGG++QR+ IA AL+ P++L+ DE T+ALD
Sbjct: 141 VGIRQAAKRLTD--------YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQ 192
Query: 516 AQSERIVQEAIDKVSKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMN 570
AQ ++++E +++ G L I H LS +R A+ + V++ G+ VE L +
Sbjct: 193 AQILQLLRELQQELNMG--LLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFS 246
|
Length = 529 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 3e-13
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 11/199 (5%)
Query: 1021 RPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNL 1080
R + + GLS + AG+ + + G +G GK+T++ +L PL G V ++ +
Sbjct: 10 RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRD 69
Query: 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTY 1140
R + L ++ EN+ + AD + ++++A LA G+ D
Sbjct: 70 SIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEA--LARV-----GLNGFEDRP 122
Query: 1141 CGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCV 1200
QLS GQ++R+ALAR +L + +LDE T+ALD + EA+ V
Sbjct: 123 VA----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMV 178
Query: 1201 VVAHRLSTIQKSDTIAVIK 1219
V+ +
Sbjct: 179 VLTTHQDLGLSEAGARELD 197
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-13
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 1021 RPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNL 1080
R ++M+ +GLS + AG+ + + G +G GK+T++ +L P G V + +
Sbjct: 10 RGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL-AEQR 68
Query: 1081 KQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDT 1139
+ +I + P L + EN+ + A ++ LA G+ D
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAV-----GLTGFEDL 123
Query: 1140 YCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD 1179
QLS GQ++R+ALAR L + +LDE T+ALD
Sbjct: 124 PAA----QLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 3e-13
Identities = 65/241 (26%), Positives = 119/241 (49%), Gaps = 33/241 (13%)
Query: 357 RPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRR--- 413
+ ++ L+ + G+++ +VG SGSGKS T L R + G V D +RR
Sbjct: 26 QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSR 85
Query: 414 ----------LHLKWLR-SQMGLVNQEPV-----LFAT--SITENILFGKDGASMDDVIS 455
++ +R + M ++ QEP+ +F I E+I + GAS ++ +
Sbjct: 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ-GASREEAMV 144
Query: 456 AAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD 515
AK ++P+ +T + + Q+SGG +QR+ IA AL P +L+ DE T+ALD
Sbjct: 145 EAKRMLDQ---VRIPEA-QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALD 200
Query: 516 ----AQSERIVQEAIDKVSKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMN 570
AQ ++++ ++S G + I H + + A+ ++V+ G+ VE+GS ++ +
Sbjct: 201 VTIQAQILQLIKVLQKEMSMG--VIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFH 258
Query: 571 R 571
Sbjct: 259 A 259
|
Length = 623 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 3e-13
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 32/175 (18%)
Query: 356 SRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL- 414
R + ++ GL+ + AG+ V + G +G+GK++ + +L P GEVL G IRR
Sbjct: 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR 69
Query: 415 -----HLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKL 469
L +L Q G+ + L A EN+ F + A
Sbjct: 70 DEYHQDLLYLGHQPGI---KTELTA---LENLRF---YQRLHGPGDDEALWEALA----- 115
Query: 470 PDGYETQVGQLGF------QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS 518
QVG GF Q+S GQ++R+A+AR + + +LDE +A+D Q
Sbjct: 116 ------QVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQG 164
|
Length = 204 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 3e-13
Identities = 66/195 (33%), Positives = 99/195 (50%), Gaps = 26/195 (13%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLL--DGYKIR------R 413
VL+ ++L V AG+ V L G SGSGKST + L Y P EG++L+ +G + R
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 414 LHLKWLRSQMGLVNQ----EPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKL 469
L+ R+ +G V+Q P + A + L + G + A A D +T+L
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR-GVPREVA-----RAKAADLLTRL 139
Query: 470 --PDGYETQVGQLG-FQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAI 526
P+ ++ L SGG++QR+ IAR I D ILLLDE T++LDA + +V E I
Sbjct: 140 NLPE----RLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELI 195
Query: 527 D-KVSKGRTTLIIAH 540
++G + I H
Sbjct: 196 REAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 4e-13
Identities = 70/269 (26%), Positives = 126/269 (46%), Gaps = 27/269 (10%)
Query: 992 DPDSPQGRD---IKRQMRGRIE---LKNV--FFAYPTRPDQMILKGLSLKIEAGKTVALV 1043
DP+ P+G + +R++ G + +KN+ F RP + L++ + A +
Sbjct: 906 DPEHPEGINDSFFERELPGLVPGVCVKNLVKIFEPSGRP---AVDRLNITFYENQITAFL 962
Query: 1044 GQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIR 1102
G +G GK+T + +L P G+V + +DI NL +R + + Q LF T+
Sbjct: 963 GHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFHHLTVA 1021
Query: 1103 ENIA-YGKADAR---ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIAL 1158
E+I Y + R E++++ A+L + G E LSGG ++++++
Sbjct: 1022 EHILFYAQLKGRSWEEAQLEMEAMLEDT---------GLHHKRNEEAQDLSGGMQRKLSV 1072
Query: 1159 ARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQ-KSDTIAV 1217
A A + + +++LDE TS +D S + + L K GRT ++ H + D IA+
Sbjct: 1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAI 1132
Query: 1218 IKNGRVVEQGSHNELVALSRGGAYYSLIK 1246
I GR+ G+ L G Y +L++
Sbjct: 1133 ISQGRLYCSGTPLFLKNCFGTGFYLTLVR 1161
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 5e-13
Identities = 52/219 (23%), Positives = 100/219 (45%), Gaps = 31/219 (14%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDI--RNYNLKQLR 1084
+K +S ++ AG+ V + G +G G+S ++ + P G + ++ +D+ R ++ R
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333
Query: 1085 SHIALVSQE-------PTLFAGTIRENIA----YGKADARESEIKKAAVLANAHEFISGM 1133
+A V ++ L ++ EN+ K +R + + A+ A E I
Sbjct: 334 LGLAYVPEDRHGHGLVLDL---SLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELI--- 387
Query: 1134 KDGYDTYCGERGV---QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEAL 1190
+ +D LSGG +Q++ LAR + + P +L+ + T LD + + E L
Sbjct: 388 -EEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL 446
Query: 1191 EKMMMGRTCVVVAHRLST-----IQKSDTIAVIKNGRVV 1224
++ V++ +S ++ SD IAVI GR+V
Sbjct: 447 LELRDAGKAVLL---ISEDLDEILELSDRIAVIYEGRIV 482
|
Length = 501 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 73.9 bits (181), Expect = 5e-13
Identities = 60/221 (27%), Positives = 108/221 (48%), Gaps = 14/221 (6%)
Query: 366 LNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGL 425
LN+ + +G +G+GK+TT+++L P G VL+ G I +L +R +G+
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGM 1007
Query: 426 VNQEPVLFA-TSITENILFGKD--GASMDDVISAAKAANAHDFITKLPD-GYETQVGQLG 481
Q +LF ++ E+ILF G S ++ +A L D G + +
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAM--------LEDTGLHHKRNEEA 1059
Query: 482 FQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHR 541
+SGG ++++++A A + D K+++LDE TS +D S R + + + K GRT ++ H
Sbjct: 1060 QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHH 1119
Query: 542 LSTIRT-ANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMV 581
+ + I ++ G++ SG+ L N G Y +V
Sbjct: 1120 MDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLV 1160
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 6e-13
Identities = 101/534 (18%), Positives = 190/534 (35%), Gaps = 76/534 (14%)
Query: 730 LFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICA 789
F G+ +L + + + G + +R L K++ I ++ D A
Sbjct: 57 FSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPI---EEIDRRGAHNLI 113
Query: 790 RLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLV--LSWRLTLVMIAVQPLVIGSYYS 847
L T + + AI ++F + + + LS + + I+ ++IG+
Sbjct: 114 PLLTHD--IDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISA--IIIGTAAQ 169
Query: 848 RNVLMKSMAG--KARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESL 905
M AR + ++ H AF G + + G + S
Sbjct: 170 LLAFMGGFKFFHAARDEEDAFNE--------HTHAIAF-------GAKELKIHGIRRLSF 214
Query: 906 KHS------------------WYSGIGLFSSQFFNT----ASTALAYWYGGRLLTQELIT 943
H + F F A A A + I
Sbjct: 215 AHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMF--------ASID 266
Query: 944 PEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDP-------DSP 996
+ L LL+ + S +++ A + + +R +E +P D+
Sbjct: 267 AAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNV 326
Query: 997 QGRDIKRQMRGRIELKNVFFAYPT--RPDQMILKGLSLKIEAGKTVALVGQSGCGKSTII 1054
+ + IELK+V + L + L+I G V +VG++GCGKST+
Sbjct: 327 LLLAHDKSV-DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLA 385
Query: 1055 GLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARE 1114
L Y P +G + +D + + R + + + LF I + G+ + +
Sbjct: 386 KLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD--EGEHASLD 443
Query: 1115 SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEA 1174
+ + L A + + G+ T LS GQ++R+AL A L++ ILL DE
Sbjct: 444 NAQQYLQRLEIADK-VKIEDGGFST-----TTALSTGQQKRLALICAWLEDRPILLFDEW 497
Query: 1175 TSALDSVSESLVQEAL--EKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQ 1226
+ D + E L + G+T ++++H + +D I + G +V+
Sbjct: 498 AADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 6e-13
Identities = 55/208 (26%), Positives = 100/208 (48%), Gaps = 16/208 (7%)
Query: 373 GKSVGLVGGSGSGKSTTIALLQRFYDP----VEGEVLLDGYKIRRLHLKWLRSQMGLVNQ 428
G+ + ++G SG+GK+T + L F P G VLL+G + K +R+ V Q
Sbjct: 51 GELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNG---MPIDAKEMRAISAYVQQ 106
Query: 429 EPVLFAT-SITENILFGKDGASMDDVISAAKAANAHDFITK--LPDGYETQVGQLGFQ-- 483
+ + T ++ E+++F V K + + L T++G G
Sbjct: 107 DDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKG 166
Query: 484 MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRL 542
+SGG+++R+A A L+ DP +L DE TS LD+ V + + ++ KG+T + H+
Sbjct: 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQP 226
Query: 543 ST--IRTANLIMVLKAGKVVESGSHNEL 568
S+ + I+++ G+V GS ++
Sbjct: 227 SSELFELFDKIILMAEGRVAYLGSPDQA 254
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 6e-13
Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 67/236 (28%)
Query: 1015 FFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPLKGSVFM 1070
F R ILK S ++ G+ V ++G+ G G ST + E +G +
Sbjct: 11 FTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV-EGDIHY 69
Query: 1071 DEQDIRNYNLKQLRSHIALVSQE----PTLFAGTIRENIAYGKADARESEIKKAAVLANA 1126
+ + ++ I VS+E PTL T+RE + A+
Sbjct: 70 NGIPYKE-FAEKYPGEIIYVSEEDVHFPTL---TVRETL-------------DFALRCKG 112
Query: 1127 HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
+EF+ G +SGG+++R+++A A++ S+L D +T LDS +
Sbjct: 113 NEFVRG---------------ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST---- 153
Query: 1187 QEALE-----KMM---MGRTCVVVAHRLSTIQKSDTI-------AVIKNGRVVEQG 1227
ALE + M + T V S Q SD I V+ GR + G
Sbjct: 154 --ALEILKCIRTMADVLKTTTFV-----SLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 7e-13
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 4/58 (6%)
Query: 485 SGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLI-IAHR 541
SGG++QR+A AR L+ PK + LDEATSALD +SE + + + ++ T+I + HR
Sbjct: 93 SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG---ITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 8e-13
Identities = 61/224 (27%), Positives = 111/224 (49%), Gaps = 30/224 (13%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHL-KWLR 420
V++ ++L V +G+ VGL+G +G+GK+TT ++ G +++D I L L R
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 421 SQMGLVNQEPVLFAT-SITENILFGKDGASM---DDVISAAKAANAHDF-----ITKLPD 471
+G + QE +F S+ +N++ A + DD+ + + A++ I L D
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLM-----AVLQIRDDLSAEQREDRANELMEEFHIEHLRD 132
Query: 472 GYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS----ERIVQEAID 527
+G +SGG+++R+ IARAL +PK +LLDE + +D S +RI++ D
Sbjct: 133 -------SMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD 185
Query: 528 KVSKGRTTLIIAHRL-STIRTANLIMVLKAGKVVESGSHNELMN 570
G LI H + T+ ++ G ++ G+ E++
Sbjct: 186 ---SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 58/219 (26%), Positives = 103/219 (47%), Gaps = 17/219 (7%)
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLL--ERFYDPLKGSVFMDEQDIRNYNL 1080
D+ ILKG++L ++ G+ A++G +G GKST+ + Y+ G++ QD+
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP 71
Query: 1081 KQLRSH--IALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKD--- 1135
+ R+ + L Q P G +AR S + + + +F+ +K
Sbjct: 72 DE-RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPL--DLLDFLKLLKAKLA 128
Query: 1136 --GYDTYCGERGVQ--LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALE 1191
G D R V SGG+K+R + + L P + +LDE S LD + +V E +
Sbjct: 129 LLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGIN 188
Query: 1192 KMMM-GRTCVVVAH--RLSTIQKSDTIAVIKNGRVVEQG 1227
++ R+ +++ H RL K D + V+ +GR+V+ G
Sbjct: 189 RLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-12
Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 16/221 (7%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
+EL+NV FAY + ++L I+ G+ + L+G +G GKST+ LL Y P G
Sbjct: 322 TLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE 379
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAH 1127
+ +D + + + R + V + LF + E + A++
Sbjct: 380 ILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLL----------GPEGKPANPALVEKWL 429
Query: 1128 EFISGMKDGYDTYCGE-RGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSV-SESL 1185
E + M + G ++LS GQK+R+AL A+ + ILLLDE + D
Sbjct: 430 ERL-KMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREF 488
Query: 1186 VQEALEKMM-MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVE 1225
Q L + MG+T ++H +D + ++NG++ E
Sbjct: 489 YQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 1e-12
Identities = 59/242 (24%), Positives = 120/242 (49%), Gaps = 41/242 (16%)
Query: 1012 KNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPLKGS 1067
KN+ AY R +++ +SL + +G+ V L+G +G GK+T ++G++ R G+
Sbjct: 7 KNLAKAYKGR---RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD----AGN 59
Query: 1068 VFMDEQDIRNYNL-KQLRSHIALVSQEPTLFAG-----------TIRENIAYGKADARES 1115
+ +D++DI L + R I + QE ++F IR++++ + + R +
Sbjct: 60 IIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRAN 119
Query: 1116 EIKKAAVLANAHEF-ISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEA 1174
E+ + EF I ++D G LSGG+++R+ +ARA+ NP +LLDE
Sbjct: 120 ELME--------EFHIEHLRDSM-------GQSLSGGERRRVEIARALAANPKFILLDEP 164
Query: 1175 TSALDSVSESLVQEALEKMM-MGRTCVVVAHRL-STIQKSDTIAVIKNGRVVEQGSHNEL 1232
+ +D +S ++ +E + G ++ H + T+ + ++ G ++ G+ E+
Sbjct: 165 FAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224
Query: 1233 VA 1234
+
Sbjct: 225 LQ 226
|
Length = 241 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-12
Identities = 63/230 (27%), Positives = 101/230 (43%), Gaps = 66/230 (28%)
Query: 373 GKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV--------LLDGYKI-----RRLHLKWL 419
G+ +G+VG SGSGKST + L P G L+ Y++ RRL +
Sbjct: 29 GEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRL----M 84
Query: 420 RSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAK-----------------AANA 462
R++ G V+Q P +DG M +SA A A
Sbjct: 85 RTEWGFVHQNP--------------RDGLRMR--VSAGANIGERLMAIGARHYGNIRATA 128
Query: 463 HDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE--- 519
D++ ++ + T++ L SGG +QR+ IAR L+ P+++ +DE T LD +
Sbjct: 129 QDWLEEV-EIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARL 187
Query: 520 -----RIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESG 563
+V++ G +I+ H L R A ++V++ G+VVESG
Sbjct: 188 LDLLRGLVRDL------GLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-12
Identities = 75/310 (24%), Positives = 126/310 (40%), Gaps = 46/310 (14%)
Query: 289 VSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEI--E 346
V+++ G V G + + TE ++A MV R + GE+ E
Sbjct: 210 VTVLRRGKVV-GTVDPVAETTEEELAEL----MVGREVVLRVVKP-----PSTPGEVVLE 259
Query: 347 FRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLL 406
D+ R T ++ ++ V AG+ VG+ G +G+G+S + + P G +LL
Sbjct: 260 VEDLS-VKDRRGVT-AVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILL 317
Query: 407 DG---------YKIRRLHLKWL---RSQMGLVNQEPVLFATSITENILFG---KDGASMD 451
+G + RRL L ++ R GLV S+ EN++ G K S
Sbjct: 318 NGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDL------SLAENLVLGRHDKKPFSRG 371
Query: 452 DVISAAKA-ANAHDFITKL---PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLL 507
+ A + I + + L SGG +Q++ +AR L R P +L+
Sbjct: 372 GFLDRRAIRKFARELIEEFDVRAPSPDAPARSL----SGGNQQKLILARELARRPDLLIA 427
Query: 508 DEATSALD-AQSERIVQEAIDKVSKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSH 565
+ T LD E I + ++ G+ L+I+ L I ++ I V+ G++V
Sbjct: 428 AQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIV-P 486
Query: 566 NELMNRGEGG 575
E R E G
Sbjct: 487 PEEATREEIG 496
|
Length = 501 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-12
Identities = 63/213 (29%), Positives = 110/213 (51%), Gaps = 22/213 (10%)
Query: 361 LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKI----RRLHL 416
L L +NL +PA + G SG+GK++ I + P +G ++L+G + + + L
Sbjct: 13 LCLT-VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICL 71
Query: 417 KWLRSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAH-DFITKLPDGYE 474
+ ++G V Q+ LF + N+ +G AK+ A D I L G E
Sbjct: 72 PPEKRRIGYVFQDARLFPHYKVRGNLRYG-----------MAKSMVAQFDKIVALL-GIE 119
Query: 475 TQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRT 534
+ + +SGG+KQR+AI RAL+ P++LL+DE ++LD +R + ++++++
Sbjct: 120 PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREIN 179
Query: 535 TLII--AHRLSTI-RTANLIMVLKAGKVVESGS 564
I+ +H L I R A+ ++VL+ GKV G
Sbjct: 180 IPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 58/229 (25%), Positives = 101/229 (44%), Gaps = 35/229 (15%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ 422
L L+ V G+ L+G +G+GK+T + ++ P EGEVL DG + ++
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 423 MGLVN--QEPVLF-ATSITEN-------------ILFGK----DGASMDDVISAAKAANA 462
G+ Q+P +F ++ EN LF + + +D++++
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLA------- 133
Query: 463 HDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIV 522
L D + L S GQKQ + I L +DPK+LLLDE + +
Sbjct: 134 ---TIGLGDERDRLAALL----SHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKT 186
Query: 523 QEAIDKVSKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMN 570
E + ++ + L++ H + +R A+ + VL G V+ GS +E+ N
Sbjct: 187 AELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235
|
Length = 249 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 71/255 (27%), Positives = 107/255 (41%), Gaps = 72/255 (28%)
Query: 343 GEIEFRDVYF-CYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVE 401
RDV F YP G+ +G+VG SGSGK+T + + P
Sbjct: 18 PGKGCRDVSFDLYP-----------------GEVLGIVGESGSGKTTLLKCISGRLTPDA 60
Query: 402 GEV--------LLDGYKI-----RRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGA 448
G V D Y + RRL LR++ G V+Q P +DG
Sbjct: 61 GTVTYRMRDGQPRDLYTMSEAERRRL----LRTEWGFVHQNP--------------RDGL 102
Query: 449 SMDDVISAAK-----------------AANAHDFITKLPDGYETQVGQLGFQMSGGQKQR 491
M +SA A A D++ ++ ++ L SGG +QR
Sbjct: 103 RMQ--VSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEID-LDRIDDLPRTFSGGMQQR 159
Query: 492 IAIARALIRDPKILLLDEATSALDAQSE-RIVQEAIDKVSK-GRTTLIIAHRLSTIR-TA 548
+ IAR L+ P+++ +DE T LD + R++ V + G +I+ H L+ R A
Sbjct: 160 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLA 219
Query: 549 NLIMVLKAGKVVESG 563
+ +MV+K G+VVESG
Sbjct: 220 DRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-12
Identities = 58/246 (23%), Positives = 98/246 (39%), Gaps = 18/246 (7%)
Query: 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
G N FF R + + + +S +I G+ V +G +G GKST + +L P G
Sbjct: 21 GLKGSLNHFFHRKERSIEAV-QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG 79
Query: 1067 SVFM---DEQDIRNYNLKQLRSHIALV--SQEPTLFAGTIRENIAYGKADARESEIKKAA 1121
V + D R L+ I LV + + +++ K EI
Sbjct: 80 KVRVNGKDPFRRREEYLR----SIGLVMGQKLQLWWDLPALDSLEVLKLIY---EIPDDE 132
Query: 1122 VLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSV 1181
+ + + +LS GQ+ R LA A+L P +L LDE T LD
Sbjct: 133 FAERLDFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVN 190
Query: 1182 SESLVQEALEKMMMGRTCVVV--AHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVALSRG 1238
+++ ++E L++ R V+ H I D + +I G++V G+ +L
Sbjct: 191 AQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGP 250
Query: 1239 GAYYSL 1244
+S+
Sbjct: 251 YKEFSV 256
|
Length = 325 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 3e-12
Identities = 57/218 (26%), Positives = 100/218 (45%), Gaps = 17/218 (7%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTII----GLLERFYDP-----LKGSVFMDEQDIRN 1077
L + L I G+ VAL+G SG GKST++ GL+ L G E +
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 1078 YNLKQLRSHIALVSQEPTLFAG-TIRENI---AYGKADARESEIKKAAVLANAHEFISGM 1133
++++ R++ + Q+ L ++ EN+ A G + +
Sbjct: 80 -DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALT 138
Query: 1134 KDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKM 1193
+ G + +R LSGGQ+QR+A+ARA+++ ++L DE ++LD S +V + L +
Sbjct: 139 RVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDI 198
Query: 1194 MM--GRTCVVVAHRLS-TIQKSDTIAVIKNGRVVEQGS 1228
G T VV H++ ++ + I ++ G V GS
Sbjct: 199 NQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236
|
Length = 262 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 4e-12
Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 54/210 (25%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH-LKWLR 420
++ ++ V AG+ VG+ G G+G++ L P GE+ LDG + R +R
Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR 74
Query: 421 SQMGLV----NQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQ 476
+ + V +E ++ S+ ENI
Sbjct: 75 AGIAYVPEDRKREGLVLDLSVAENIA---------------------------------- 100
Query: 477 VGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD--AQSERIVQEAIDKVSKGRT 534
L +SGG +Q++ +AR L RDP++L+LDE T +D A++E I + + G+
Sbjct: 101 ---LSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAE-IYRLIRELADAGKA 156
Query: 535 TLIIAHRLST-----IRTANLIMVLKAGKV 559
L+I S+ + + I+V+ G++
Sbjct: 157 VLLI----SSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 4e-12
Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 18/209 (8%)
Query: 1032 LKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVS 1091
L + G+ + L+G +G GK+T++ + P KG+V + + HI V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVP 55
Query: 1092 QEPTL---FAGTIRENIAYGKADA----RESEIKKAAVLANAHEFISGMKDGYDTYCGER 1144
Q F ++ + G+ R + A + +A + G+ + D GE
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRV-GLTELADRPVGE- 113
Query: 1145 GVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM-GRTCVVVA 1203
LSGGQ+QR+ +ARA+ PS+LLLDE + LD ++ L+ E ++ G ++
Sbjct: 114 ---LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTT 170
Query: 1204 HRLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
H L+ + V+ NGRV+ G+ +L
Sbjct: 171 HDLAQAMATCDRVVLLNGRVIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 5e-12
Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 43/228 (18%)
Query: 366 LNLRVPAGKSVGLVGGSGSGKSTTIA----LLQRFYDPVEGEVLLDGYKIRRLHLKWLRS 421
L+ V AG+ + LVG +G+GKST +A LL P G + G + L
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-----PGSGSIQFAGQPLEAWSAAELAR 69
Query: 422 QMG-LVNQEPVLFATSITENI-LFGKDGASMDDVISAAKAANAHDFIT---KLPDGYETQ 476
L Q+ FA + + + L D + V SA + + L D
Sbjct: 70 HRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASAL------NEVAEALGLDDKLGRS 123
Query: 477 VGQLGFQMSGGQKQRIAIARALIR-------DPKILLLDEATSALD-AQSERIVQEAIDK 528
V QL SGG+ QR+ +A +++ ++LLLDE ++LD AQ Q A+D+
Sbjct: 124 VNQL----SGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ-----QAALDR 174
Query: 529 V-----SKGRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELMN 570
+ +G ++ +H L+ T+R A+ + +LK GK++ SG +E++
Sbjct: 175 LLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222
|
Length = 248 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 5e-12
Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 24/214 (11%)
Query: 368 LRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVN 427
L G+ +GL+G +G+GK+T + + P +G V + G + +G V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 428 QEPVL---FATSITENILFGKDG-------ASMDDVISAAKAANAHDFITKLPDGYETQV 477
Q F S+ ++ G+ G + D + A +T+L D V
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVG-LTELAD---RPV 111
Query: 478 GQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTL 536
G+L SGGQ+QR+ +ARAL P +LLLDE + LD ++ ++ E +++ G L
Sbjct: 112 GEL----SGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAIL 167
Query: 537 IIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570
+ H L+ +VL G+V+ G+ +L +
Sbjct: 168 MTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 5e-12
Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 33/223 (14%)
Query: 369 RVPAGKSVGLVGGSGSGKSTT---IALLQRFYDPVEGEVL-LDGYKIRRLHLKWLR---- 420
V G+ VG+VG SGSGKS + I L + V E L +G ++R+ K R
Sbjct: 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVG 88
Query: 421 SQMGLVNQEPVLFATS----------ITENILFGKDGASMDDVISAAKAANAHDFITK-- 468
+++ ++ Q+P+ TS I E I + G + A D + +
Sbjct: 89 AEVAMIFQDPM---TSLNPCYTVGFQIMEAIKVHQGGNK------KTRRQRAIDLLNQVG 139
Query: 469 LPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE-RIVQEAID 527
+PD +++ Q+SGG QR+ IA A+ PK+L+ DE T+ALD + +I++ ++
Sbjct: 140 IPDP-ASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLE 198
Query: 528 KVSKGRTTLI-IAHRLSTI-RTANLIMVLKAGKVVESGSHNEL 568
K L+ I H L+ + A+ I+V+ AG+VVE+G +++
Sbjct: 199 LQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI 241
|
Length = 326 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 7e-12
Identities = 66/262 (25%), Positives = 125/262 (47%), Gaps = 30/262 (11%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTI-ALLQRFY-DPVEGEVLLDGYKIRRLHLKWL 419
+L G+ G+ + ++G SGSGKST + AL R + G +L + K + LK
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK-- 140
Query: 420 RSQMGLVNQEPVLFA-TSITENILFGK-----DGASMDDVISAAKAANAHDFITKLPDGY 473
+ G V Q+ +L+ ++ E ++F + + I A++ + +TK +
Sbjct: 141 --RTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN-- 196
Query: 474 ETQVGQLGFQ-MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE-RIVQEAIDKVSK 531
T +G + +SGG+++R++IA ++ +P +L+LDE TS LDA + R+V K
Sbjct: 197 -TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK 255
Query: 532 GRTTLIIAHRLST--IRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASE 589
G+T + H+ S+ + + ++VL G+ + G ++ M Y++ V
Sbjct: 256 GKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM------AYFESVGFSPSFPM 309
Query: 590 NDTSNDTFNDFSH---QMDAIN 608
N D D ++ Q D ++
Sbjct: 310 NPA--DFLLDLANGVCQTDGVS 329
|
Length = 659 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 7e-12
Identities = 45/215 (20%), Positives = 87/215 (40%), Gaps = 66/215 (30%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKS----TIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ 1082
++ +S ++ AG+ V + G G G++ + GL P G + +D + + + +
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP----PASGEITLDGKPVTRRSPRD 71
Query: 1083 LRSH-IALVSQEPT---LFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGY 1137
IA V ++ L ++ ENIA
Sbjct: 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALS----------------------------- 102
Query: 1138 DTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD--SVSE--SLVQEALEKM 1193
LSGG +Q++ LAR + ++P +L+LDE T +D + +E L++E +
Sbjct: 103 --------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA- 153
Query: 1194 MMGRTCVVVAHRLST-----IQKSDTIAVIKNGRV 1223
G+ +++ S+ + D I V+ GR+
Sbjct: 154 --GKAVLLI----SSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 7e-12
Identities = 54/208 (25%), Positives = 98/208 (47%), Gaps = 14/208 (6%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ 422
L+ + VP G LVG +GSGKST L F G++ + G R+ K L +
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82
Query: 423 MGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGF 482
+ + F + + ++ G+ G + + A D ++ +V + F
Sbjct: 83 VPQSEEVDWSFPVLVEDVVMMGRYGH-----MGWLRRAKKRD--RQIVTAALARVDMVEF 135
Query: 483 ------QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE-RIVQEAIDKVSKGRTT 535
++SGGQK+R+ +ARA+ + +++LLDE + +D ++E RI+ + +G+T
Sbjct: 136 RHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTM 195
Query: 536 LIIAHRLSTIRTANLIMVLKAGKVVESG 563
L+ H L ++ V+ G V+ SG
Sbjct: 196 LVSTHNLGSVTEFCDYTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 7e-12
Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 54/198 (27%)
Query: 358 PDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE-VLLDGYKIRRLHL 416
P +L+ ++L G +G++G +G+GKST + ++ EGE G K+
Sbjct: 18 PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKV----- 72
Query: 417 KWLRSQMGLVNQEPVLFAT-SITENI-------------------LFGKDGASMDDVIS- 455
G + QEP L ++ EN+ + + A D + +
Sbjct: 73 -------GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAE 125
Query: 456 AAK------AANAHDFITKL---------PDGYETQVGQLGFQMSGGQKQRIAIARALIR 500
+ AA+A D ++L P + +V +L SGG+++R+A+ R L+
Sbjct: 126 QGELQEIIDAADAWDLDSQLEIAMDALRCPPW-DAKVTKL----SGGERRRVALCRLLLE 180
Query: 501 DPKILLLDEATSALDAQS 518
P +LLLDE T+ LDA+S
Sbjct: 181 KPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 8e-12
Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 58/208 (27%)
Query: 358 PDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLL-DGYKIRRLHL 416
P +L+ ++L G +G++G +G+GKST + ++ GE G K+
Sbjct: 16 PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKV----- 70
Query: 417 KWLRSQMGLVNQEPVLFAT-SITENI-------------------LFGKDGASMDDVIS- 455
G + QEP L T ++ EN+ F + A MD +++
Sbjct: 71 -------GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAE 123
Query: 456 ------AAKAANAHDFITKL---------PDGYETQVGQLGFQMSGGQKQRIAIARALIR 500
AA+A D KL P + V +L SGG+++R+A+ R L+
Sbjct: 124 QAELQEIIDAADAWDLDRKLEIAMDALRCPPW-DADVTKL----SGGERRRVALCRLLLS 178
Query: 501 DPKILLLDEATSALDAQS----ERIVQE 524
P +LLLDE T+ LDA+S E+ +QE
Sbjct: 179 KPDMLLLDEPTNHLDAESVAWLEQHLQE 206
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 9e-12
Identities = 56/252 (22%), Positives = 109/252 (43%), Gaps = 43/252 (17%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRF--YDPVEGEVL----------- 405
VL+ ++ + G+ +G++G SG+GKS + +L+ Y+P G ++
Sbjct: 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGY 71
Query: 406 -----LDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENI---------LFGKDGASMD 451
G ++ N L I + I L+G D +D
Sbjct: 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRR-RIRKRIAIMLQRTFALYGDDTV-LD 129
Query: 452 DVISAA-----KAANAHDFITKLPDGYETQVGQ----LGFQMSGGQKQRIAIARALIRDP 502
+V+ A + A L + Q+ + +SGG+KQR+ +AR L ++P
Sbjct: 130 NVLEALEEIGYEGKEAVGRAVDLIE--MVQLSHRITHIARDLSGGEKQRVVLARQLAKEP 187
Query: 503 KILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTI-RTANLIMVLKAGKV 559
+ L DE T LD Q+ ++V A+++ K G + ++ +H I ++ + L+ G++
Sbjct: 188 FLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEI 247
Query: 560 VESGSHNELMNR 571
E G+ +E++
Sbjct: 248 KEEGTPDEVVAV 259
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 1e-11
Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 23/198 (11%)
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ 1082
DQ +L+ +S + AG + L G +G GK+T++ L+ +P KG + + Q I+ +L
Sbjct: 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCT 71
Query: 1083 LRSHIALVSQE----PTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGY- 1137
+ + V P L T+REN Y +I + E +
Sbjct: 72 YQKQLCFVGHRSGINPYL---TLRENCLY--------DIHFSPGAVGITELCRLFSLEHL 120
Query: 1138 -DTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVS-ESLVQEALEKMMM 1195
D CG LS GQK+++AL R + + LLDE ALD +S +++ + E
Sbjct: 121 IDYPCG----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAK 176
Query: 1196 GRTCVVVAHRLSTIQKSD 1213
G ++ +H+ + K+D
Sbjct: 177 GGAVLLTSHQDLPLNKAD 194
|
Length = 200 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-11
Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 26/208 (12%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
I+ +N+ P ++++ LS ++ +G + + G +GCGKS++ +L + P+ G
Sbjct: 451 GIKFENIPLVTPN--GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELW-PVYGG 507
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAY-------GKADARESEIKKA 1120
K + + V Q P + GT+R+ I Y + + ++++
Sbjct: 508 RLT----------KPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQ- 556
Query: 1121 AVLANAH-EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD 1179
+L N I + G+ V LSGG+KQRIA+AR P +LDE TSA+
Sbjct: 557 -ILDNVQLTHILEREGGWSAVQDWMDV-LSGGEKQRIAMARLFYHKPQFAILDECTSAVS 614
Query: 1180 SVSESLVQEALEKMMMGRTCVVVAHRLS 1207
E + + G T V+HR S
Sbjct: 615 VDVEGYMYRLCRE--FGITLFSVSHRKS 640
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-11
Identities = 59/241 (24%), Positives = 106/241 (43%), Gaps = 54/241 (22%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+EF +V Y L+L+ L+ R+ G + +VG +G+GKST + LL P+ G V
Sbjct: 322 LEFENVSKGYDGGR--LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHD 464
+K +G +Q + + +
Sbjct: 380 ------KVGETVK-----IGYFDQH---RDELDPDKTVL--------------------E 405
Query: 465 FITKL-PDGYETQV----GQLGF----------QMSGGQKQRIAIARALIRDPKILLLDE 509
+++ PDG E +V G+ GF +SGG+K R+ +A+ L++ P +LLLDE
Sbjct: 406 ELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDE 465
Query: 510 ATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNEL 568
T+ LD +S ++EA+ +G T L+++H + R A I +++ G + +
Sbjct: 466 PTNHLDIESLEALEEALLDF-EG-TVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDY 523
Query: 569 M 569
+
Sbjct: 524 L 524
|
Length = 530 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 62/246 (25%), Positives = 111/246 (45%), Gaps = 40/246 (16%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
++ R V F +R + + ++L VP GK ++G SG GK+T + L+ P GE+
Sbjct: 8 VDMRGVSF---TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 405 LLDGYKI---RRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAAN 461
L DG I R L +R +M ++ Q LF T+ +F D+V A
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALF----TDMNVF-------DNV---AYPLR 110
Query: 462 AHDFITKLPD--------------GYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLL 507
H T+LP G + ++SGG +R A+ARA+ +P +++
Sbjct: 111 EH---TQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMF 167
Query: 508 DEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGS 564
DE D + ++ + I +++ G T ++++H + + + A+ ++ K+V GS
Sbjct: 168 DEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGS 227
Query: 565 HNELMN 570
L
Sbjct: 228 AQALQA 233
|
Length = 269 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 2e-11
Identities = 30/77 (38%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 1147 QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRL 1206
QLSGG+K R+ALA+ +L+NP++LLLDE T+ LD S ++EAL++ T ++V+H
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE--YPGTVILVSHDR 127
Query: 1207 STIQK-SDTIAVIKNGR 1222
+ + + I +++G+
Sbjct: 128 YFLDQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 2e-11
Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 34/243 (13%)
Query: 356 SRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALL--QRFYDPVEGEVLLDGYKIRR 413
S D +L+GLNL V G+ ++G +GSGKST A L + Y+ G V G +
Sbjct: 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 414 LHLKWLRSQMG--LVNQEPV--------LFATSITENILFGKDGASMDDVISAAKAANAH 463
L + R+ G + Q PV F + + + +D +
Sbjct: 70 LSPE-DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRF-------DFQ 121
Query: 464 DFIT------KLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ 517
D + K+P+ T+ +GF SGG+K+R I + + +P++ +LDE+ S LD
Sbjct: 122 DLMEEKIALLKMPEDLLTRSVNVGF--SGGEKKRNDILQMAVLEPELCILDESDSGLDID 179
Query: 518 SERIVQEAIDKVSKG-RTTLIIAH--RLSTIRTANLIMVLKAGKVVESGSHN---ELMNR 571
+ +IV + ++ + G R+ +I+ H R+ + + VL G++V+SG +L +
Sbjct: 180 ALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQ 239
Query: 572 GEG 574
G G
Sbjct: 240 GYG 242
|
Length = 248 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 361 LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL--HLKW 418
L + +NL V + V L+G +G+GK+T L FY P G +LL G I L H
Sbjct: 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI- 77
Query: 419 LRSQMGLVN--QEPVLFAT-SITENILFGKDGASMDDVISA---------------AKAA 460
++MG+V Q LF ++ EN+L + + S +AA
Sbjct: 78 --ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAA 135
Query: 461 NAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER 520
+ + L + Q G L + GQ++R+ IAR ++ P+IL+LDE + L+ + +
Sbjct: 136 TWLERV-GLLEHANRQAGNLAY----GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETK 190
Query: 521 IVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570
+ E I ++ T L+I H + + ++ I V+ G + +G+ E+ N
Sbjct: 191 ELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN 243
|
Length = 255 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 65/235 (27%), Positives = 118/235 (50%), Gaps = 30/235 (12%)
Query: 356 SRPDTLV--LQGLNLRVPAGKSVGLVGGSGSGKSTT----IALLQRFYDPVEGEVLLDGY 409
S PD V + LN + AG+++G+VG SGSGKS T + LL + G +G
Sbjct: 23 STPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAA-NGRIGGSATFNGR 81
Query: 410 KIRRL---HLKWLRS-QMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDF 465
+I L L LR+ Q+ ++ Q+P+ TS+ + + G + +V+ K + +
Sbjct: 82 EILNLPEKELNKLRAEQISMIFQDPM---TSLNP---YMRVGEQLMEVLMLHKGMSKAEA 135
Query: 466 I---------TKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDA 516
K+P+ + ++ + SGG +QR+ IA AL+ PK+L+ DE T+ALD
Sbjct: 136 FEESVRMLDAVKMPEARK-RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDV 194
Query: 517 QSERIVQEAIDKVSKGRTTLI--IAHRLSTIR-TANLIMVLKAGKVVESGSHNEL 568
+ + ++++ + T I I H L + + ++V+ AG+ +E G+ ++
Sbjct: 195 TVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV 249
|
Length = 330 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 3e-11
Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 54/195 (27%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKST---TIALLQRFYDPVE 401
++ + V Y T V++G++L V G+ + LVG SG GKST +A L+R
Sbjct: 4 LKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI---TS 58
Query: 402 GEVLLDGYKIRRLHLKWLRSQMGLVNQ-EP------VLFAT-------SITENILFGKDG 447
GE+ + G R VN+ EP ++F S+ EN+ +G
Sbjct: 59 GEIWIGG---RV------------VNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKI 103
Query: 448 ASMDD------VISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501
M V AA+ + + P ++SGGQ+QR+A+ RA++R+
Sbjct: 104 RGMPKAEIEERVAEAARILELEPLLDRKPR-----------ELSGGQRQRVAMGRAIVRE 152
Query: 502 PKILLLDEATSALDA 516
P + L DE S LDA
Sbjct: 153 PAVFLFDEPLSNLDA 167
|
Length = 356 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 4e-11
Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 45/234 (19%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLK----- 1081
++ LS ++ G+T+A+VG+SG GKS L R + G V D+ +R + +
Sbjct: 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91
Query: 1082 -----QLR----SHIALVSQEPT-----LFA--GTIRENIAYGKADARESEIKKAAVLAN 1125
Q+R + +A++ QEP +F I E+I + +RE + +A + +
Sbjct: 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLD 151
Query: 1126 ------AHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD 1179
A +S QLSGG +QR+ +A A+ P++L+ DE T+ALD
Sbjct: 152 QVRIPEAQTILSRYPH-----------QLSGGMRQRVMIAMALSCRPAVLIADEPTTALD 200
Query: 1180 SVSES----LVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGS 1228
++ L++ ++M MG + + H + + + +D + V+ G VE GS
Sbjct: 201 VTIQAQILQLIKVLQKEMSMG--VIFITHDMGVVAEIADRVLVMYQGEAVETGS 252
|
Length = 623 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 6e-11
Identities = 64/240 (26%), Positives = 108/240 (45%), Gaps = 44/240 (18%)
Query: 1021 RPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLE-RFYDP-------LKGSVFMDE 1072
R + IL+ LSL+IE G+ AL+G++G GKST++ L + G V ++
Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70
Query: 1073 QDIRNYNLKQLRSHIALVSQ--EPTLFAGTIRENIAYGK---------ADARESEIKKAA 1121
+ + + +L A++ Q +P FA + RE + G+ R+ EI A
Sbjct: 71 EPLAAIDAPRLARLRAVLPQAAQPA-FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQA 129
Query: 1122 VLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILK---------NPSILLLD 1172
LA A G G LSGG+ R+ AR + + P LLLD
Sbjct: 130 -LALA---------GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLD 179
Query: 1173 EATSALDSVSESLVQEALEKMM----MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGS 1228
E T+ALD + + + + ++ +G +V L+ + +D IA++ +G +V G+
Sbjct: 180 EPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHGA 238
|
Length = 272 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 8e-11
Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 27/227 (11%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVL-------LDGYKI 411
L + +L + G+ L+G SGSGKST + + G VL +D
Sbjct: 36 LVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANC 95
Query: 412 RRLHLKWLRS-QMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDFITKL 469
L+ LR+ ++ +V Q+ L ++ EN+ FG + M + + + L
Sbjct: 96 DAATLRRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVG-L 154
Query: 470 PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDA------QSERI-V 522
+ + G+L SGG +QR+ +ARA + ILL+DE SALD Q E + +
Sbjct: 155 AQWADRKPGEL----SGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLEL 210
Query: 523 QEAIDKVSKGRTTLIIAHRL-STIRTANLIMVLKAGKVVESGSHNEL 568
Q + K T + ++H L ++ N I +++ G++++ G+ E+
Sbjct: 211 QSKLKK-----TIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEI 252
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 9e-11
Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 23/238 (9%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERF--YDPLKGSVFMDEQDIRNYNLKQL 1083
ILKGL+L I G+ A++G +G GKST+ ++ Y L+G + + I + ++
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE- 80
Query: 1084 RSH--IALVSQEPTLFAGTIREN---IAYGKADARESEIKKAAVLANAHEFIS------G 1132
R+H I L Q P G + +AY + + + + L E I+ G
Sbjct: 81 RAHLGIFLAFQYPIEIPGVSNADFLRLAY-NSKRKFQGLPELDPLE-FLEIINEKLKLVG 138
Query: 1133 MKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEK 1192
M + + G SGG+K+R + + L + + +LDE S LD + ++ E + K
Sbjct: 139 MDPSFLSRNVNEG--FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINK 196
Query: 1193 MMMGRTCVV-VAH--RLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKP 1247
+M ++ + H RL K D + V++NG++++ G L + G Y +K
Sbjct: 197 LMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELAKELEKKG--YDWLKQ 252
|
Length = 252 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 9e-11
Identities = 59/228 (25%), Positives = 108/228 (47%), Gaps = 30/228 (13%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ 422
L+ +NL V G+ L+G +G+GKST + +L ++P +G + ++ +L K L +Q
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK-LAAQ 79
Query: 423 MGL--VNQE-PVLFATSITENILFGKD------GASMDDVISAAKAANAHDFITKLPDGY 473
+G+ + QE V+ ++ EN+ G+ G ++ D A L
Sbjct: 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL 139
Query: 474 ETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV---- 529
+ +V L S KQ + IA+ L+ D K++++DE TS+L + +D +
Sbjct: 140 DEKVANL----SISHKQMLEIAKTLMLDAKVIIMDEPTSSL-------TNKEVDYLFLIM 188
Query: 530 ----SKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNRG 572
+G + I+H+L+ IR + V+K G V SG +++ N
Sbjct: 189 NQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDD 236
|
Length = 510 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 13/207 (6%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNY-NLKQLRS 1085
LKG+S IE G+ V +G +G GK+T + +L P G V + + + K+
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV--AGLVPWKRRKKFLR 94
Query: 1086 HIALV-SQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGE 1143
I +V Q+ L+ + ++ A + A E +
Sbjct: 95 RIGVVFGQKTQLWWDLPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV 151
Query: 1144 RGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGR--TCVV 1201
R QLS GQ+ R +A A+L P IL LDE T LD V++ ++ L++ R T ++
Sbjct: 152 R--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLL 209
Query: 1202 VAHRLSTIQK-SDTIAVIKNGRVVEQG 1227
+H + I+ + + VI GR++ G
Sbjct: 210 TSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-10
Identities = 57/239 (23%), Positives = 115/239 (48%), Gaps = 43/239 (17%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLK-QLRS 1085
LK ++L + G+ AL+G++G GKST++ +L ++P KG++ ++ + + K +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 1086 HIALVSQEPTLFAG-TIRENIAYGK-----------ADARESEIKKAAVLANAHEFISGM 1133
I ++ QE ++ T+ EN+ G+ D RE ++ A +L G+
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMML-----LRVGL 135
Query: 1134 KDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKM 1193
K D LS KQ + +A+ ++ + ++++DE TS SL + ++ +
Sbjct: 136 KVDLDEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTS-------SLTNKEVDYL 184
Query: 1194 MM--------GRTCVVVAHRLSTIQK-SDTIAVIKNG-----RVVEQGSHNELVALSRG 1238
+ G V ++H+L+ I++ D V+K+G +V S++++V L G
Sbjct: 185 FLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVRLMVG 243
|
Length = 510 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 67/238 (28%), Positives = 98/238 (41%), Gaps = 82/238 (34%)
Query: 373 GKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV--------LLDGYKI---RRLHLKWLRS 421
G+ +G+VG SGSGK+T + L P GEV L D Y + R L LR+
Sbjct: 32 GEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRL--LRT 89
Query: 422 QMGLVNQEPVLFATSITENILFGKDGASMDDVISA--------------------AKAAN 461
+ G V+Q P +DG M +SA A A +
Sbjct: 90 EWGFVHQHP--------------RDGLRMQ--VSAGGNIGERLMAVGARHYGDIRATAGD 133
Query: 462 -------AHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSAL 514
I LP + SGG +QR+ IAR L+ P+++ +DE T L
Sbjct: 134 WLERVEIDAARIDDLPTTF-----------SGGMQQRLQIARNLVTHPRLVFMDEPTGGL 182
Query: 515 DAQSE--------RIVQEAIDKVSKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESG 563
D + +V+E G +I+ H L+ R A+ ++V+K G+VVESG
Sbjct: 183 DVSVQARLLDLLRGLVREL------GLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-10
Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 32/193 (16%)
Query: 1024 QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERF--------YDPLKGSVFMDEQDI 1075
+ +L+ L+L+I+ G VA+VGQSG GK+T++ ++ Y P G V + + +
Sbjct: 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV 455
Query: 1076 RNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARES-EIKKAAVLANAHEFISGMK 1134
+ EP TI E++ D + EI A L++A +
Sbjct: 456 SALIPGEY---------EPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFS 506
Query: 1135 DGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKM- 1193
+ LS GQK+R LA+ + + P++LL+DE + LD ++ V + ++
Sbjct: 507 E------------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA 554
Query: 1194 -MMGRTCVVVAHR 1205
G T +VV HR
Sbjct: 555 REAGITLIVVTHR 567
|
Length = 593 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-10
Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 22/147 (14%)
Query: 1041 ALVGQSGCGKSTIIGLLERFYDPLKGSV-------FMDEQDIRNYNLKQLRSHIALVSQE 1093
A+ G+SG GK+++I + P KG + F E+ I L + I V Q+
Sbjct: 28 AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGI---CLPPEKRRIGYVFQD 84
Query: 1094 PTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQ 1152
LF +R N+ YG A + ++ K L G++ D Y G LSGG+
Sbjct: 85 ARLFPHYKVRGNLRYGMAKSMVAQFDKIVALL-------GIEPLLDRYPG----SLSGGE 133
Query: 1153 KQRIALARAILKNPSILLLDEATSALD 1179
KQR+A+ RA+L P +LL+DE ++LD
Sbjct: 134 KQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 62/228 (27%), Positives = 110/228 (48%), Gaps = 37/228 (16%)
Query: 1030 LSLKIEAGKTVALVGQSGCGKS----TIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLR- 1084
+S ++ G+ V +VG+SG GKS I+GL++ + + + QD++ + K+ R
Sbjct: 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRN 85
Query: 1085 ---SHIALVSQEPTL-------FAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMK 1134
+ +A++ Q+P I E I + +++ ++A L N G+
Sbjct: 86 LVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLN----QVGIP 141
Query: 1135 DG---YDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEAL- 1190
D D Y QLSGG QR+ +A AI P +L+ DE T+ALD ++ + E L
Sbjct: 142 DPASRLDVYPH----QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLL 197
Query: 1191 -----EKMMMGRTCVVVAHRLSTIQKS-DTIAVIKNGRVVEQGSHNEL 1232
E M + V++ H L+ + ++ I V+ G+VVE G +++
Sbjct: 198 ELQQKENMAL----VLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI 241
|
Length = 326 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 60.5 bits (146), Expect = 2e-10
Identities = 35/189 (18%), Positives = 57/189 (30%), Gaps = 59/189 (31%)
Query: 373 GKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVL 432
G+ + +VG GSGK+T L R P G V+
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIY-------------------------- 35
Query: 433 FATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRI 492
+D++ + G + R+
Sbjct: 36 ---------------IDGEDILEEVLDQLLLIIVGGKKASGS-----------GELRLRL 69
Query: 493 AIARALIRDPKILLLDEATSALDAQSERIVQEAID-------KVSKGRTTLIIAHRLSTI 545
A+A A P +L+LDE TS LDA+ E ++ + K K T ++ + +
Sbjct: 70 ALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
Query: 546 RTANLIMVL 554
A L
Sbjct: 130 GPALLRRRF 138
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 33/223 (14%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL-RS 421
L L+ V AG+ + LVG +G+GKST +A + G + G + L R
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARH 73
Query: 422 QMGLVNQEPVLFATSITENI-LFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQL 480
+ L Q+ FA + + L D + + A A D KL
Sbjct: 74 RAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDD---KLGRSTN------ 124
Query: 481 GFQMSGGQKQRIAIARALIR-------DPKILLLDEATSALD-AQSERIVQEAIDKV--- 529
Q+SGG+ QR+ +A +++ ++LLLDE ++LD AQ Q A+D++
Sbjct: 125 --QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQ-----QSALDRLLSA 177
Query: 530 --SKGRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELM 569
+G ++ +H L+ T+R A+ +LK GK++ SG E++
Sbjct: 178 LCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 54/206 (26%), Positives = 102/206 (49%), Gaps = 16/206 (7%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHL-KWLR 420
L ++L + G+ V L+G +G+GK+T + L G ++ DG I K +R
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 421 SQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQ 479
+ +V + +F+ ++ EN+ G G + + ++ +L +E ++ +
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMG--GFFAERDQFQERIKWVYELFPRL---HERRIQR 134
Query: 480 LGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV----SKGRTT 535
G MSGG++Q +AI RAL+ P++LLLDE + L + I+Q+ D + +G T
Sbjct: 135 AG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIIIQQIFDTIEQLREQGMTI 190
Query: 536 LIIAHRLS-TIRTANLIMVLKAGKVV 560
++ + ++ A+ VL+ G VV
Sbjct: 191 FLVEQNANQALKLADRGYVLENGHVV 216
|
Length = 237 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 3e-10
Identities = 52/213 (24%), Positives = 107/213 (50%), Gaps = 27/213 (12%)
Query: 372 AGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPV 431
G+++ ++G +GSGKST +L +P GE+L+D + + + ++ ++ Q+P
Sbjct: 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDP- 96
Query: 432 LFATSITENILFGKDGASMD-------DVISAAKAANAHDFITK---LPDGYETQVGQLG 481
+TS+ + +D D+ + + + + LPD
Sbjct: 97 --STSLNPR---QRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPD----HASYYP 147
Query: 482 FQMSGGQKQRIAIARALIRDPKILLLDEATSALD----AQSERIVQEAIDKVSKGRTTLI 537
++ GQKQR+ +ARALI PK+++ DEA ++LD +Q ++ E +K +G + +
Sbjct: 148 HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK--QGISYIY 205
Query: 538 IAHRLSTIR-TANLIMVLKAGKVVESGSHNELM 569
+ L ++ ++ ++V+ G+VVE GS +++
Sbjct: 206 VTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 22/215 (10%)
Query: 1030 LSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL------ 1083
+S + G+ + +VG+SG GKST++G L P G+ + L QL
Sbjct: 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81
Query: 1084 ---RSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAA-----VLANAHEFISGMKD 1135
R+ V Q P +R ++ G A+ E + A + A A +++ ++
Sbjct: 82 RLMRTEWGFVHQNP---RDGLRMRVSAG-ANIGERLMAIGARHYGNIRATAQDWLEEVEI 137
Query: 1136 GYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM- 1194
+ SGG +QR+ +AR ++ P ++ +DE T LD ++ + + L ++
Sbjct: 138 DPTR-IDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 196
Query: 1195 -MGRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQG 1227
+G ++V H L + + + V++ GRVVE G
Sbjct: 197 DLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 62/253 (24%), Positives = 106/253 (41%), Gaps = 64/253 (25%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALL--QRFYDPVEGEVLLDGYKIR---- 412
+ +L+GLNL + G+ ++G +GSGKST ++ Y +EG++L G I
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78
Query: 413 ---------------------------RLHLKWLRSQMGLVNQEPVLFATSITENILFGK 445
RL R GL +P+ F I E +
Sbjct: 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKL---- 134
Query: 446 DGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKIL 505
MD F+++ V + GF SGG+K+R I + + D ++
Sbjct: 135 KLVGMDPS-----------FLSR-------NVNE-GF--SGGEKKRNEILQMALLDSELA 173
Query: 506 LLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAH--RLSTIRTANLIMVLKAGKVVES 562
+LDE S LD + +I+ E I+K+ + ++I H RL + + V++ GK++++
Sbjct: 174 ILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233
Query: 563 GS---HNELMNRG 572
G EL +G
Sbjct: 234 GDAELAKELEKKG 246
|
Length = 252 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 3e-10
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 32/191 (16%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRF--------YDPVEGEVLLDGYKIRR 413
VL+ LNL + G V +VG SG+GK+T + ++ Y P G+V + +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457
Query: 414 LHLKWLRSQMGLVN-QEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDG 472
L + G V E + T D + ++++ A ++A + K +
Sbjct: 458 LIPGEYEPEFGEVTILEHLRSKTG---------DLNAAVEILNRAGLSDAVLYRRKFSE- 507
Query: 473 YETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-- 530
+S GQK+R +A+ L P +LL+DE + LD + V I +++
Sbjct: 508 -----------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE 556
Query: 531 KGRTTLIIAHR 541
G T +++ HR
Sbjct: 557 AGITLIVVTHR 567
|
Length = 593 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 46/224 (20%)
Query: 345 IEFRDVYFCYPSRPDTL-VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALL-QRFYD-PVE 401
+ ++++ + P + +L ++ V G L+G SG+GK+T + +L R +
Sbjct: 4 LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT 63
Query: 402 GEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATS-ITENILFGKDGASMDDVISAAKAA 460
GE+L++G + K + G V Q+ V + E + F SA
Sbjct: 64 GEILINGRPLD----KNFQRSTGYVEQQDVHSPNLTVREALRF-----------SALLRG 108
Query: 461 NAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER 520
+S Q++R+ I L P IL LDE TS LD+Q+
Sbjct: 109 -----------------------LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAY 145
Query: 521 IVQEAIDKV-SKGRTTLIIAHRLSTIRTANLIMVL---KAGKVV 560
+ + K+ G+ L H+ S +L + GK V
Sbjct: 146 NIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTV 189
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 4e-10
Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 26/214 (12%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
L+ S + G ALVG +G GKST+ L F G + + Q L++ +
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT-RQALQK--NL 79
Query: 1087 IALVSQEPTL---FAGTIRENIAYGK---------ADARESEIKKAAVLANAHEFISGMK 1134
+A V Q + F + + + G+ A R+ +I AA LA M
Sbjct: 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAA-LARV-----DMV 133
Query: 1135 DGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM 1194
+ GE LSGGQK+R+ LARAI + ++LLDE + +D +E+ + L ++
Sbjct: 134 EFRHRQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR 189
Query: 1195 -MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQG 1227
G+T +V H L ++ + V+ G V+ G
Sbjct: 190 DEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 6e-10
Identities = 66/263 (25%), Positives = 111/263 (42%), Gaps = 74/263 (28%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTI------ALLQRFY---DPVEGEVLLDGYKIRR 413
L+ +++ +P G + G SGSGKS+ I AL +R + + ++G +
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLE--- 67
Query: 414 LHLKWLRSQMGLVNQEPV-------------LFATSITENILF-----GK---------- 445
H+ + +++Q P+ +F I E LF GK
Sbjct: 68 -HIDKVI----VIDQSPIGRTPRSNPATYTGVF-DEIRE--LFCEVCKGKRYNRETLEVR 119
Query: 446 -DGASMDDVISAAKAANAHDFITKLPD-------------GYETQVGQLGFQMSGGQKQR 491
G S+ DV+ A +F +P GY ++GQ +SGG+ QR
Sbjct: 120 YKGKSIADVL-DMTVEEALEFFENIPKIARKLQTLCDVGLGY-IKLGQPATTLSGGEAQR 177
Query: 492 IAIARALIR---DPKILLLDEATSALDAQSERIVQEAIDK-VSKGRTTLIIAHRLSTIRT 547
I +A+ L + + +LDE T+ L + + E + + V KG T ++I H L I+
Sbjct: 178 IKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC 237
Query: 548 ANLIMVL------KAGKVVESGS 564
A+ I+ L G+VV SG+
Sbjct: 238 ADWIIDLGPEGGDGGGQVVASGT 260
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 6e-10
Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 21/207 (10%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLR-S 1085
L G +L + G+ +ALVG++G GKST++ +L Y GS+ +++ K + +
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
Query: 1086 HIALVSQEPTLFAG-TIRENI--------AYGKADARESEIKKAAVLANAHEFISGMKDG 1136
I ++ QE L TI ENI +G+ D ++ + +LA ++
Sbjct: 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARL-----NLRFS 134
Query: 1137 YDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSAL-DSVSESLVQEALEKMMM 1195
D GE LS G++Q + +A+ + ++++DE T AL D+ +ESL + E
Sbjct: 135 SDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ 190
Query: 1196 GRTCVVVAHRLSTI-QKSDTIAVIKNG 1221
GR V ++HRL I + D + V ++G
Sbjct: 191 GRGIVYISHRLKEIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 8e-10
Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 28/219 (12%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL-RS 1085
L LSL ++ G+ ++G +G GK+T++ ++ P +GSV D+ Q+ R+
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 1086 HIALVSQEPTLFAG-TIREN--------------IAYGKADARESEIKKAAVLANAHEFI 1130
I Q+PT+F T+ EN + + + + I++ E I
Sbjct: 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVL------ETI 131
Query: 1131 SGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEAL 1190
G+ D D G LS GQKQ + + ++++P +LLLDE + + E L
Sbjct: 132 -GLADEADRLAGL----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELL 186
Query: 1191 EKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGS 1228
+ + + VVV H + ++ +D + V+ G V+ +GS
Sbjct: 187 KSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-09
Identities = 61/237 (25%), Positives = 110/237 (46%), Gaps = 43/237 (18%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH-LKWLR 420
++ ++ V AG+ +G+ G G+G++ L GE+LLDG +R ++
Sbjct: 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIK 333
Query: 421 SQMGLV----NQEPVLFATSITENILFGKDGASMDDVIS------AAKAANAHDFITKL- 469
+ + V E ++ SI ENI AS+ + A A +I +L
Sbjct: 334 AGIAYVPEDRKSEGLVLDMSIAENITL----ASLRRFSRRGLIDRRKERALAERYIRRLR 389
Query: 470 --PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD--AQSE--RIVQ 523
E +G L SGG +Q++ +AR L DPK+L+LDE T +D A++E R+++
Sbjct: 390 IKTPSPEQPIGTL----SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIR 445
Query: 524 EAIDKVSKGRTTLIIAHRLST-----IRTANLIMVLKAGKVV-----ESGSHNELMN 570
E +G+ L+I S+ + ++ I+V++ G++V E + +M
Sbjct: 446 ELAA---EGKAILMI----SSELPELLGLSDRILVMREGRIVGELDREEATEEAIMA 495
|
Length = 500 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 48/206 (23%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQ----DIRNYNLK 1081
+L+ +SL + AG+ V L G SG GKST++ L Y P +G + + + D+ +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 1082 QL----RSHIALVSQ---------------EPTLFAGTIRENIAYGKADARESEI---KK 1119
++ R+ I VSQ EP L G RE +A KA + + ++
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPRE-VARAKAADLLTRLNLPER 144
Query: 1120 AAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD 1179
LA A SGG++QR+ +AR + + ILLLDE T++LD
Sbjct: 145 LWSLAPA--------------------TFSGGEQQRVNIARGFIVDYPILLLDEPTASLD 184
Query: 1180 SVSESLVQEAL-EKMMMGRTCVVVAH 1204
+ + ++V E + E G V + H
Sbjct: 185 ATNRAVVVELIREAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 44/207 (21%), Positives = 84/207 (40%), Gaps = 43/207 (20%)
Query: 355 PSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKST---TIALLQRFYDPVEGEVLLDGYKI 411
R +L+ + V G+ V ++G GSG ST +A VEG++ +G
Sbjct: 15 KGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY 74
Query: 412 RRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPD 471
+ K+ ++ V++E V F T + + A ++F+ +
Sbjct: 75 KEFAEKY-PGEIIYVSEEDVHFPTLTVR------------ETLDFALRCKGNEFVRGI-- 119
Query: 472 GYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK 531
SGG+++R++IA AL+ +L D +T LD+ + A++ +
Sbjct: 120 -------------SGGERKRVSIAEALVSRASVLCWDNSTRGLDSST------ALEILKC 160
Query: 532 GRTTLIIAHRLSTIRTANLIMVLKAGK 558
RT +A L +T + + +A
Sbjct: 161 IRT---MADVL---KTTTFVSLYQASD 181
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 1e-09
Identities = 48/192 (25%), Positives = 89/192 (46%), Gaps = 27/192 (14%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW 418
D +LQ ++ +PAG + L G +G+GK+T + L+ +P +GE+L + I++ L
Sbjct: 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCT 71
Query: 419 LRSQMGLVNQE----PVLFATSITENILFGKDGAS----MDDVISAAKAANAHDFITKLP 470
+ Q+ V P L ++ EN L+ + + ++ + D+ L
Sbjct: 72 YQKQLCFVGHRSGINPYL---TLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGL- 127
Query: 471 DGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS-ERIVQEAIDKV 529
+S GQK+++A+ R + K+ LLDE ALD S I+ + +
Sbjct: 128 -------------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHR 174
Query: 530 SKGRTTLIIAHR 541
+KG L+ +H+
Sbjct: 175 AKGGAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 32/221 (14%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL--HLKWLR 420
L L+L V G+ ++G +G+GK+T + ++ P EG VL G + L H
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ---I 74
Query: 421 SQMGLVN--QEPVLF-ATSITEN-------------ILFGKDGASMDDVISAAKAANAHD 464
++ G+ Q+P +F ++ EN LF + A D I
Sbjct: 75 ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLE----- 129
Query: 465 FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE 524
L D + G L S GQKQ + I L++DPK+LLLDE + + + E
Sbjct: 130 -TIGLADEADRLAGLL----SHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAE 184
Query: 525 AIDKVSKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGS 564
+ ++ + +++ H + +R+ A+ + VL G V+ GS
Sbjct: 185 LLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-09
Identities = 74/268 (27%), Positives = 110/268 (41%), Gaps = 46/268 (17%)
Query: 972 SKGSNAVRSVFAILDRRSEID--------------PDSPQGRDIKRQMRGRIELKNVFFA 1017
+K ++ V+S LDR +D PD G I I + F
Sbjct: 465 AKRASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPI-------ISFSDASFG 517
Query: 1018 YPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRN 1077
YP P ++ K L+ I+ +A+VG +G GKSTI+ L+ P G+VF + +R
Sbjct: 518 YPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK-VRM 574
Query: 1078 YNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGY 1137
Q +S P L+ + K A LA ++ Y
Sbjct: 575 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA--------LQPMY 626
Query: 1138 DTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD-SVSESLVQEALEKMMMG 1196
LSGGQK R+A A+ K P ILLLDE ++ LD E+L+Q + + G
Sbjct: 627 ---------TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLV--LFQG 675
Query: 1197 RTCVVVAHRLSTIQKS-DTIAVIKNGRV 1223
+V+H I S D + V+ G+V
Sbjct: 676 GVL-MVSHDEHLISGSVDELWVVSEGKV 702
|
Length = 718 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 32/188 (17%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLD-----GYKIRRLHL 416
VL ++L + GK + L+G +G+GKST + ++ P EG + + GY ++L+L
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYL 78
Query: 417 KWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQ 476
+ L T L + G +D++ A K A I Q
Sbjct: 79 ------------DTTLPLT--VNRFLRLRPGTKKEDILPALKRVQAGHLID-----APMQ 119
Query: 477 VGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRT 534
++SGG+ QR+ +ARAL+ P++L+LDE T +D + + + ID++ +
Sbjct: 120 ------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCA 173
Query: 535 TLIIAHRL 542
L+++H L
Sbjct: 174 VLMVSHDL 181
|
Length = 251 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 62/238 (26%), Positives = 103/238 (43%), Gaps = 40/238 (16%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTI-ALLQRFYDP-------VEGEVLLDGYKIRR 413
+L+ L+LR+ G+ L+G +G+GKST + AL V G+V L+G +
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 414 LHLKWL-RSQMGLVNQEPVLFATSITENILFG------KDGASM---DDVISAAKAANAH 463
+ L R + L FA S E +L G + GA ++ A A
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA-- 133
Query: 464 DFITKLPDGYETQVGQLGFQMSGGQKQRIAIARAL---------IRDPKILLLDEATSAL 514
G VG+ +SGG+ R+ AR L + P+ LLLDE T+AL
Sbjct: 134 --------GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAAL 185
Query: 515 DAQSERIVQEAIDKVSK--GRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELM 569
D + + + + ++++ L I H + R A+ I +L G +V G+ +++
Sbjct: 186 DLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-09
Identities = 52/178 (29%), Positives = 88/178 (49%), Gaps = 29/178 (16%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
M + L+NV ++ R +L +SL+++ GK + L+G +G GKST++ ++ P
Sbjct: 1 MTSLVSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD 57
Query: 1065 KGSVFMDEQDIRNYNLKQLRSHIAL---VSQEPTLFAGTIRENIAYGKADARESEIKKAA 1121
+G + + + Y ++L L V++ L GT +E+I A R +A
Sbjct: 58 EGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDI--LPALKR----VQAG 111
Query: 1122 VLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD 1179
L +A M+ +LSGG+ QR+ LARA+L P +L+LDE T +D
Sbjct: 112 HLIDA-----PMQ------------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 4e-09
Identities = 62/231 (26%), Positives = 98/231 (42%), Gaps = 56/231 (24%)
Query: 1031 SLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL------- 1083
S + G+ + +VG+SG GK+T++ L P G V +D + +L L
Sbjct: 26 SFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRR 85
Query: 1084 --RSHIALVSQEP------TLFAGTIRENIA----------YGKADARESEIKKAAV--L 1123
R+ V Q P + AG NI YG +I+ A L
Sbjct: 86 LLRTEWGFVHQHPRDGLRMQVSAGG---NIGERLMAVGARHYG-------DIRATAGDWL 135
Query: 1124 ANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183
+ + D T+ SGG +QR+ +AR ++ +P ++ +DE T LD VS
Sbjct: 136 ERVEIDAARIDDLPTTF--------SGGMQQRLQIARNLVTHPRLVFMDEPTGGLD-VS- 185
Query: 1184 SLVQEALEKMM------MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227
VQ L ++ +G V+V H L+ + + + V+K GRVVE G
Sbjct: 186 --VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 6e-09
Identities = 62/235 (26%), Positives = 106/235 (45%), Gaps = 52/235 (22%)
Query: 1030 LSLKIEAGKTVALVGQSGCGKS----TIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL-- 1083
L+ + AG+T+ +VG+SG GKS ++GLL + GS + ++I N K+L
Sbjct: 35 LNFSLRAGETLGIVGESGSGKSQTAFALMGLLAA-NGRIGGSATFNGREILNLPEKELNK 93
Query: 1084 -RS-HIALVSQEP-TLFAGTIR--ENIA--------YGKADARESEIK--KAAVLANA-- 1126
R+ I+++ Q+P T +R E + KA+A E ++ A + A
Sbjct: 94 LRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARK 153
Query: 1127 ------HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS 1180
HEF SGG +QR+ +A A+L P +L+ DE T+ALD
Sbjct: 154 RMKMYPHEF-------------------SGGMRQRVMIAMALLCRPKLLIADEPTTALDV 194
Query: 1181 VSESLVQEALE--KMMMGRTCVVVAHRLSTIQKS-DTIAVIKNGRVVEQGSHNEL 1232
++ + L K +++ H L + D + V+ GR +E G+ ++
Sbjct: 195 TVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV 249
|
Length = 330 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 7e-09
Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 30/219 (13%)
Query: 1030 LSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL------ 1083
+S + G+ + +VG+SG GK+T++ + P G+V +D + +L +
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84
Query: 1084 ---RSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAA-----VLANAHEFISGMKD 1135
R+ V Q P +R ++ G + E + A + A A +++ ++
Sbjct: 85 RLLRTEWGFVHQNP---RDGLRMQVSAG-GNIGERLMAIGARHYGNIRAEAQDWLEEVEI 140
Query: 1136 GYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM- 1194
D + SGG +QR+ +AR ++ P ++ +DE T LD VS VQ L ++
Sbjct: 141 DLDR-IDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD-VS---VQARLLDLLR 195
Query: 1195 -----MGRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQG 1227
+G V+V H L+ + +D + V+K G+VVE G
Sbjct: 196 GLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 7e-09
Identities = 28/77 (36%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRL 542
Q+SGG+K R+A+A+ L+ +P +LLLDE T+ LD +S ++EA+ + T ++++H
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE--YPGTVILVSHDR 127
Query: 543 STI-RTANLIMVLKAGK 558
+ + A I+ L+ GK
Sbjct: 128 YFLDQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 1e-08
Identities = 65/296 (21%), Positives = 125/296 (42%), Gaps = 63/296 (21%)
Query: 985 LDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPT-RPDQMIL-----------KGLSL 1032
+E D ++ R M GR EL+++F P + +L + +S
Sbjct: 227 RPTAAETSED-----ELVRLMVGR-ELEDLFPEPPEEGIGEPVLEVRNLSGGGKVRDVSF 280
Query: 1033 KIEAGKTVALVGQSGCGKS----TIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ-LRSHI 1087
+ AG+ + + G G G++ + G G + +D + +R + + +++ I
Sbjct: 281 TVRAGEILGIAGLVGAGRTELARALFGARP----ASSGEILLDGKPVRIRSPRDAIKAGI 336
Query: 1088 ALVS---QEPTLFAG-TIRENIAYG--KADARESEIKKAAVLANAHEFISGMK---DGYD 1138
A V + L +I ENI + +R I + A A +I ++ +
Sbjct: 337 AYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPE 396
Query: 1139 TYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD-----SVSESLVQEALEKM 1193
G LSGG +Q++ LAR + +P +L+LDE T +D + + + A E
Sbjct: 397 QPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-- 450
Query: 1194 MMGRTCVVVAHRLST-----IQKSDTIAVIKNGRVV-----EQGSHNELVALSRGG 1239
G+ +++ S+ + SD I V++ GR+V E+ + ++A + GG
Sbjct: 451 --GKAILMI----SSELPELLGLSDRILVMREGRIVGELDREEATEEAIMAAAFGG 500
|
Length = 500 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 22/166 (13%)
Query: 1021 RPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIR---- 1076
R ++++ GLS + AG+ V + G +G GK++++ +L P G V + IR
Sbjct: 11 RDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRD 70
Query: 1077 --NYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARE-SEIKKAAVLANAHEFISGM 1133
+ +L L H + E T EN+ + + + LA G+
Sbjct: 71 EYHQDLLYL-GHQPGIKTELTAL-----ENLRFYQRLHGPGDDEALWEALAQV-----GL 119
Query: 1134 KDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD 1179
D QLS GQ++R+ALAR L + +LDE +A+D
Sbjct: 120 AGFEDVPVR----QLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
|
Length = 204 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 45/217 (20%)
Query: 1012 KNVFFAYPT-RPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLL-ERFYDPL-KGSV 1068
KN+ + P + +L +S ++ G AL+G+SG GK+T++ +L R + G +
Sbjct: 7 KNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI 66
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAH 1127
++ + + K + V Q+ T+RE + + +A+L
Sbjct: 67 LINGRPLD----KNFQRSTGYVEQQDVHSPNLTVREALRF------------SALL---- 106
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
RG LS Q++R+ + + PSIL LDE TS LDS + +
Sbjct: 107 ----------------RG--LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIV 148
Query: 1188 EALEKMMM-GRTCVVVAHRLS--TIQKSDTIAVIKNG 1221
L+K+ G+ + H+ S +K D + ++K G
Sbjct: 149 RFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-08
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 28/177 (15%)
Query: 373 GKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV--LLDGYKIRRLHLKWLRSQMGLVNQEP 430
G+ +G++G +G GK+T + LL P EG L YK + + +
Sbjct: 367 GEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDY---------DGT 417
Query: 431 VLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQ 490
V E++L ++ S K L D E V +L SGG+ Q
Sbjct: 418 V-------EDLLRSAIRSAFGS--SYFKTEIVKPL--NLEDLLERPVDEL----SGGELQ 462
Query: 491 RIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV--SKGRTTLIIAHRLSTI 545
R+AIA AL R+ + LLDE ++ LD + IV + I + + +T L++ H + I
Sbjct: 463 RVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMI 519
|
Length = 591 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-08
Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 56/217 (25%)
Query: 1007 GRI--ELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
G+I E++NV + + ++K S +++ G +AL+G +GCGK+T++ L+
Sbjct: 316 GKIVFEMENVNYQID---GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD 372
Query: 1065 KGSV---------FMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARES 1115
G + + D+ H A + E T+ +N+A GK +E
Sbjct: 373 SGRIHCGTKLEVAYFDQ-------------HRAELDPEK-----TVMDNLAEGK---QEV 411
Query: 1116 EI--KKAAVLANAHEFISGMKDGYDTYCGERGVQ----LSGGQKQRIALARAILKNPSIL 1169
+ + VL +F+ K R + LSGG++ R+ LAR LK ++L
Sbjct: 412 MVNGRPRHVLGYLQDFLFHPK---------RAMTPVKALSGGERNRLLLARLFLKPSNLL 462
Query: 1170 LLDEATSALDSVSESLVQEALEKMMMGR--TCVVVAH 1204
+LDE T+ LD E+L E LE+++ T ++V+H
Sbjct: 463 ILDEPTNDLD--VETL--ELLEELLDSYQGTVLLVSH 495
|
Length = 635 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 49/233 (21%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALL-----QRFYDP 399
I + Y RP +L L+ +V G+ +VG +G+GKST ++L+ Q + +
Sbjct: 261 IVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSND 317
Query: 400 V--------EGEVLLDGYKIRRLHLKWLRSQMGL---VNQEPVLFATSITENILFGK-DG 447
+ GE + D I++ H+ ++ S + L V+ TS+ IL G D
Sbjct: 318 LTLFGRRRGSGETIWD---IKK-HIGYVSSSLHLDYRVS-------TSVRNVILSGFFDS 366
Query: 448 ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQ-MSGGQKQRIA-IARALIRDPKIL 505
+ +S + A ++ L G + + F +S GQ QR+A I RAL++ P +L
Sbjct: 367 IGIYQAVSDRQQKLAQQWLDIL--GIDKRTADAPFHSLSWGQ-QRLALIVRALVKHPTLL 423
Query: 506 LLDEATSALDAQSERIVQEAIDK-VSKGRTTLI------------IAHRLSTI 545
+LDE LD + ++V+ +D +S+G T L+ I HRL +
Sbjct: 424 ILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFV 476
|
Length = 490 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 35/227 (15%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQ-DIRNYNLKQL-R 1084
L LS ++ G+ L+G +G GK+T++ ++ P +G V D D+ ++ R
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 1085 SHIALVSQEPTLFAG-TIRENI--------------AYGKADARESEIKKAAVLANAHEF 1129
+ I Q+PT+F T+REN+ I + +LA
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDE--LLA----- 133
Query: 1130 ISGMKDGYDTYCGERGVQ---LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
G+ D ER LS GQKQ + + + ++P +LLLDE + +
Sbjct: 134 TIGLGD-------ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKT 186
Query: 1187 QEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
E L+ + + +VV H + +++ +D + V+ G V+ +GS +E+
Sbjct: 187 AELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233
|
Length = 249 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 52/211 (24%), Positives = 83/211 (39%), Gaps = 55/211 (26%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDG-YKIRRLHLKWLRS 421
LQ L++ +P V + G SGSGKST ++ +G Y + L
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKST---------------LVNEGLYASGKARLISFLP 55
Query: 422 QMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLG 481
F ++ D + F+ + GY T +GQ
Sbjct: 56 --------------------KFSRNKLIFIDQLQ---------FLIDVGLGYLT-LGQKL 85
Query: 482 FQMSGGQKQRIAIARALIRDPK--ILLLDEATSALDAQSERIVQEAIDK-VSKGRTTLII 538
+SGG+ QR+ +A L +P + +LDE ++ L Q + E I + G T ++I
Sbjct: 86 STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILI 145
Query: 539 AHRLSTIRTANLIMVL------KAGKVVESG 563
H L + +A+ I+ GKVV SG
Sbjct: 146 EHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 8e-08
Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 22/195 (11%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLR-S 421
L G L V G+ + LVG +G+GKST + +L Y G +L G + + + S
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLG---KEVTFNGPKSS 76
Query: 422 Q---MGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKA-ANAHDFITKL--PDGYE 474
Q +G+++QE L +I ENI G++ + I K A A + +L +
Sbjct: 77 QEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSD 136
Query: 475 TQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSAL-DAQSE---RIVQEAIDKVS 530
VG+L S G++Q + IA+ L + K++++DE T AL D ++E R+++E
Sbjct: 137 KLVGEL----SIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS--- 189
Query: 531 KGRTTLIIAHRLSTI 545
+GR + I+HRL I
Sbjct: 190 QGRGIVYISHRLKEI 204
|
Length = 501 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 9e-08
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 44/197 (22%)
Query: 1017 AYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIR 1076
P P + ILK +SL G + ++G +G GKST++ ++ G
Sbjct: 13 VVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP---- 66
Query: 1077 NYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADAR--------------------ES 1115
+ + QEP L T+REN+ G A+ + ++
Sbjct: 67 GIK-------VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDA 119
Query: 1116 EIKKAAVL------ANAHEFISGMKDGYDTY-C--GERGVQ-LSGGQKQRIALARAILKN 1165
+ + A L A+A + ++ D C + V LSGG+++R+AL R +L
Sbjct: 120 LLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSK 179
Query: 1166 PSILLLDEATSALDSVS 1182
P +LLLDE T+ LD+ S
Sbjct: 180 PDMLLLDEPTNHLDAES 196
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 60/208 (28%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
I + + ++ P +L L IE + V LVG++G GKST++ +L G V
Sbjct: 4 ISIHGAWLSFSDAP---LLDNAELHIEDNERVCLVGRNGAGKSTLMKILN-------GEV 53
Query: 1069 FMD------EQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKA------------ 1110
+D EQD+ L+Q P GT+ + +A G
Sbjct: 54 LLDDGRIIYEQDLIVARLQQ---------DPPRNVEGTVYDFVAEGIEEQAEYLKRYHDI 104
Query: 1111 ------DARESEIKKAAVL------ANAHEFISGMKDGYDTYCGERGV-------QLSGG 1151
D E + + A L N + + + + + G+ LSGG
Sbjct: 105 SHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINE----VLAQLGLDPDAALSSLSGG 160
Query: 1152 QKQRIALARAILKNPSILLLDEATSALD 1179
++ AL RA++ NP +LLLDE T+ LD
Sbjct: 161 WLRKAALGRALVSNPDVLLLDEPTNHLD 188
|
Length = 635 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 39/170 (22%), Positives = 74/170 (43%), Gaps = 22/170 (12%)
Query: 373 GKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVL 432
+ +G++G +G GK+T I +L P EG++ ++ + G V
Sbjct: 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRD---- 80
Query: 433 FATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRI 492
+SIT++ F ++ ++ + +V +L SGG+ QR+
Sbjct: 81 LLSSITKD--FYTHPYFKTEIAKP----------LQIEQILDREVPEL----SGGELQRV 124
Query: 493 AIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV--SKGRTTLIIAH 540
AIA L +D I LLDE ++ LD + + + I + + +T ++ H
Sbjct: 125 AIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 2e-07
Identities = 37/188 (19%), Positives = 58/188 (30%), Gaps = 61/188 (32%)
Query: 1037 GKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFM-DEQDIRNYNLKQLRSHIALVSQEPT 1095
G+ + +VG G GK+T+ L R P G V D +DI L QL I +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASG 61
Query: 1096 LFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQR 1155
+ R
Sbjct: 62 SGELRL-----------------------------------------------------R 68
Query: 1156 IALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM-------GRTCVVVAHRLST 1208
+ALA A P +L+LDE TS LD+ E+L+ E ++ T ++ +
Sbjct: 69 LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
Query: 1209 IQKSDTIA 1216
+ +
Sbjct: 129 LGPALLRR 136
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-07
Identities = 57/231 (24%), Positives = 93/231 (40%), Gaps = 40/231 (17%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPLKGSVFMD---EQDIRN- 1077
ILK + I+ G+ ++G+ G G ST I + F+ ++G + D ++I+
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKH 135
Query: 1078 ------YNLKQLRSHIALVSQEPTL-FAGTIRENIAYGKADARESEIKKAAVLANAHEFI 1130
YN + H ++ TL FA + +RE K A + A
Sbjct: 136 YRGDVVYN-AETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMA---T 191
Query: 1131 SGMKDGYDTYCGE---RGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
G+ +T G RGV SGG+++R+++A A L I D AT LDS +
Sbjct: 192 YGLSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATRGLDSAT----- 244
Query: 1188 EALEKMMMGRTCVVVAHRLSTI---QKS-------DTIAVIKNGRVVEQGS 1228
ALE + +T + + Q S D + V+ G + G
Sbjct: 245 -ALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 2e-07
Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 39/191 (20%)
Query: 373 GKSVGLVGGSGSGKSTTIALLQ--------RFYDPVEGEVLLDGYK-------IRRLHLK 417
GK G++G +G GK+T + +L + + + +L ++ ++L+
Sbjct: 99 GKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNG 158
Query: 418 WLRS----QMGLVNQEPVLFATSITENILFGKDGASM-DDVISAAKAANAHDFITKLPDG 472
++ Q V+ P +F + E +L D D+V+ N D
Sbjct: 159 EIKVVHKPQY--VDLIPKVFKGKVRE-LLKKVDERGKLDEVVERLGLENILD-------- 207
Query: 473 YETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERI-VQEAIDKVSK 531
+ +L SGG+ QR+AIA AL+RD DE TS LD +R+ V I ++++
Sbjct: 208 --RDISEL----SGGELQRVAIAAALLRDADFYFFDEPTSYLDI-RQRLNVARLIRELAE 260
Query: 532 GRTTLIIAHRL 542
G+ L++ H L
Sbjct: 261 GKYVLVVEHDL 271
|
Length = 590 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 53/233 (22%), Positives = 106/233 (45%), Gaps = 30/233 (12%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKS----TIIGLLERFYDPLKGSVFMDEQDIRNYNLK 1081
+ +S+ + G+ LVG+SG GKS I G+ + + + D+ D+ + +
Sbjct: 22 AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81
Query: 1082 QLRS----HIALVSQEPTL-------FAGTIRENIAYGKADARESE---IKKAAVLANAH 1127
+ R +++++ QEP + +NI R + +K + H
Sbjct: 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLH 141
Query: 1128 EFISGMKDGYD---TYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSES 1184
G+KD D +Y E L+ G+ Q++ +A A+ P +L+ DE T++++ +++
Sbjct: 142 RV--GIKDHKDIMRSYPYE----LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQA 195
Query: 1185 LVQEALEKM--MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
+ L ++ T ++++H L I + +D I V+ G+ VE ELV
Sbjct: 196 QIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVT 248
|
Length = 330 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 41/212 (19%)
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ 1082
D++IL + L + G + L+G++G GKST+I LL P+ G +
Sbjct: 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI-------------G 370
Query: 1083 LRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCG 1142
L I L FA + + + +AD ES ++ A LA E ++D Y G
Sbjct: 371 LAKGIKL-----GYFA---QHQLEFLRAD--ESPLQHLARLA-PQELEQKLRD----YLG 415
Query: 1143 ERGVQ----------LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEK 1192
G Q SGG+K R+ LA + + P++LLLDE T+ LD + EAL
Sbjct: 416 GFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL-- 473
Query: 1193 MMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRV 1223
+ VVV+H ++ +D + ++ +G+V
Sbjct: 474 IDFEGALVVVSHDRHLLRSTTDDLYLVHDGKV 505
|
Length = 638 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 4e-07
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IEL+N+ Y + +LK +SL I G + LVG++G GKST++ L+ +P +G V
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 4e-07
Identities = 53/195 (27%), Positives = 75/195 (38%), Gaps = 46/195 (23%)
Query: 331 DDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTI 390
DD+ G + I F D F YP P L+ + LN + + +VG +G GKST +
Sbjct: 501 DDRPGPPI------ISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTIL 552
Query: 391 ALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASM 450
L+ P G V K+R M + +Q V DG
Sbjct: 553 KLISGELQPSSGTVFRSA-KVR----------MAVFSQHHV--------------DGL-- 585
Query: 451 DDVISAAKAANAHDFITKLPDGYETQVGQLG----------FQMSGGQKQRIAIARALIR 500
D+ S F +G G + +SGGQK R+A A+ +
Sbjct: 586 -DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 644
Query: 501 DPKILLLDEATSALD 515
P ILLLDE ++ LD
Sbjct: 645 KPHILLLDEPSNHLD 659
|
Length = 718 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 4e-07
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 37/190 (19%)
Query: 373 GKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLD---GYKIRRLHLKWLRSQMGLVNQE 429
G+ +G+VG +G GK+T LL P EGEV + YK + + G V
Sbjct: 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYI----KPDYDGTVED- 419
Query: 430 PVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKL--PDGYETQVGQLGFQMSGG 487
SIT+++ G+S + I L + V L SGG
Sbjct: 420 ---LLRSITDDL-----GSSYYK----------SEIIKPLQLERLLDKNVKDL----SGG 457
Query: 488 QKQRIAIARALIRDPKILLLDEATSALDAQSERI-VQEAIDKV--SKGRTTLIIAHRLST 544
+ QR+AIA L RD + LLDE ++ LD +R+ V +AI ++ + T L++ H +
Sbjct: 458 ELQRVAIAACLSRDADLYLLDEPSAHLDV-EQRLAVAKAIRRIAEEREATALVVDHDIYM 516
Query: 545 IRT-ANLIMV 553
I ++ +MV
Sbjct: 517 IDYISDRLMV 526
|
Length = 590 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 53/214 (24%)
Query: 358 PDTLVLQGLNLRVPA-GKSVGLVGGSGSGKSTTIALLQ--------RFYDPVEGEVLLDG 408
P++ L L VP G+ +GLVG +G GKST + +L +F DP + + +LD
Sbjct: 12 PNSFKLHRLP--VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDE 69
Query: 409 YKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMD----DVISAAKAANAHD 464
++ L + +L G + D+I A +
Sbjct: 70 FRGSELQ--------------------NYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGE 109
Query: 465 FITKLPD--GYETQVGQLGF---------QMSGGQKQRIAIARALIRDPKILLLDEATSA 513
+ K + + V QL Q+SGG+ QR+AIA AL RD DE +S
Sbjct: 110 LLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSY 169
Query: 514 LDAQSE----RIVQEAIDKVSKGRTTLIIAHRLS 543
LD + R+++E + L++ H L+
Sbjct: 170 LDIKQRLNAARLIRELAE---DDNYVLVVEHDLA 200
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 23/192 (11%)
Query: 356 SRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL- 414
SR + V L+ V AG+++ + G +G+GK+T + +L G++ +DG R
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 415 ---HLKWLRSQMGLVNQEPVLFATSITENILF--GKDGASMDDVISAAKAANAHDFITKL 469
+ +L + + + S EN+ F G G + +A A I L
Sbjct: 80 RSRFMAYL-GHLPGLKAD-----LSTLENLHFLCGLHGRRAKQMPGSALA------IVGL 127
Query: 470 PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAID-K 528
+T V QL S GQK+R+A+AR + + LLDE + LD + +V I
Sbjct: 128 AGYEDTLVRQL----SAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAH 183
Query: 529 VSKGRTTLIIAH 540
+ G L+ H
Sbjct: 184 LRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 6e-07
Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 52/210 (24%)
Query: 1037 GKTVALVGQSGCGKSTIIGLL---------------------ERFYDPLKGSVFMDE-QD 1074
GK ++G +G GK+T + +L +RF +G+ + +
Sbjct: 99 GKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRF----RGTELQNYFKK 154
Query: 1075 IRNYNLKQLRSH-IALVSQEPTLFAGTIRENIAYGKADARE--SEIKKAAVLANAHEFIS 1131
+ N +K H V P +F G +RE + K D R E+ + L N +
Sbjct: 155 LYNGEIKV--VHKPQYVDLIPKVFKGKVRELLK--KVDERGKLDEVVERLGLENILD--- 207
Query: 1132 GMKDGYDTYCGERGV-QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL-VQEA 1189
R + +LSGG+ QR+A+A A+L++ DE TS LD + + L V
Sbjct: 208 ------------RDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD-IRQRLNVARL 254
Query: 1190 LEKMMMGRTCVVVAHRLSTIQK-SDTIAVI 1218
+ ++ G+ +VV H L+ + +D + +
Sbjct: 255 IRELAEGKYVLVVEHDLAVLDYLADNVHIA 284
|
Length = 590 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 6e-07
Identities = 64/236 (27%), Positives = 104/236 (44%), Gaps = 37/236 (15%)
Query: 1010 ELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVF 1069
+LK++FF L +S ++ G+ V ++G +G GKST+ L+ P KG+V
Sbjct: 23 KLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV- 81
Query: 1070 MDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIA-----YGKADARESEI-KKAAVL 1123
++K + IA+ S G ENI G + EI +
Sbjct: 82 ---------DIKGSAALIAISSGLNGQLTGI--ENIELKGLMMGLTKEKIKEIIPEIIEF 130
Query: 1124 ANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183
A+ +FI Y S G K R+ A ++ NP IL++DEA S D +
Sbjct: 131 ADIGKFIYQPVKTY-----------SSGMKSRLGFAISVHINPDILVIDEALSVGD---Q 176
Query: 1184 SLVQEALEKM----MMGRTCVVVAHRLSTIQKSDTIAV-IKNGRVVEQGSHNELVA 1234
+ ++ L+KM G+T ++H LS ++ T A+ + G+V E G E+V
Sbjct: 177 TFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD 232
|
Length = 549 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 8e-07
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 14/173 (8%)
Query: 1020 TRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN 1079
+R ++ + L ++AG+ + + G +G GK+T++ +L G + +D + +
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 1080 LKQLRSHIALVSQEPTLFAG-TIRENIAYGKA-DARESEIKKAAVLANAHEFISGMKDGY 1137
+ +A + P L A + EN+ + R ++ + LA I G+
Sbjct: 80 RSR---FMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALA-----IVGLAGYE 131
Query: 1138 DTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEAL 1190
DT QLS GQK+R+ALAR L + LLDE + LD +LV +
Sbjct: 132 DTLVR----QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
|
Length = 214 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-06
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 39/225 (17%)
Query: 367 NLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRS----- 421
+ V AG+ VGL G G+G+S + LL G+V LDG I +RS
Sbjct: 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPID------IRSPRDAI 326
Query: 422 QMGLV------NQEPVLFATSITENI------LFGKDGASMDDVISAAKAANAHDFITKL 469
+ G++ E ++ S+ +NI + G +++ +A NA FI L
Sbjct: 327 RAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINN---RWEAENADRFIRSL 383
Query: 470 ----PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD--AQSERIVQ 523
P E + L SGG +Q+ + R L D K++LLDE T +D A+ E I
Sbjct: 384 NIKTPSR-EQLIMNL----SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHE-IYN 437
Query: 524 EAIDKVSKGRTTLIIAHRL-STIRTANLIMVLKAGKVVESGSHNE 567
+ ++G L ++ L + A+ I+V++ G++ + +
Sbjct: 438 VIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482
|
Length = 501 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-06
Identities = 53/212 (25%), Positives = 101/212 (47%), Gaps = 38/212 (17%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IE ++ + + L++ L+ ++P G VG++G +G+GKST ++ P G +
Sbjct: 323 IEAENLSKGFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQ-----EPVLFATSITENILFGKDGASMDDVISAAKA 459
+ G + ++ V+Q +P ++ E I G D + ++A
Sbjct: 380 KI-GETV----------KLAYVDQSRDALDP---NKTVWEEISGGLDIIQLGKREVPSRA 425
Query: 460 -ANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS 518
+F K D + +VGQL SGG++ R+ +A+ L +LLLDE T+ LD ++
Sbjct: 426 YVGRFNF--KGSD-QQKKVGQL----SGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478
Query: 519 ERIVQEAIDKVSKGRTTLIIAH------RLST 544
R ++EA+ + ++I+H R++T
Sbjct: 479 LRALEEALLEF--AGCAVVISHDRWFLDRIAT 508
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 14/188 (7%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL-- 419
+++ L+ VP+G ++ + G +G GKS+ +L + PV G L K + L ++
Sbjct: 467 LIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELW-PVYGGRL---TKPAKGKLFYVPQ 522
Query: 420 RSQMGLVN-QEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVG 478
R M L ++ +++ S + + G S D+ + + +G + V
Sbjct: 523 RPYMTLGTLRDQIIYPDSSED---MKRRGLSDKDLEQILDNVQLTHILER--EGGWSAVQ 577
Query: 479 QLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLII 538
+SGG+KQRIA+AR P+ +LDE TSA+ E + + G T +
Sbjct: 578 DWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSV 635
Query: 539 AHRLSTIR 546
+HR S +
Sbjct: 636 SHRKSLWK 643
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 2e-06
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 52/202 (25%)
Query: 1017 AYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST---IIGLLERFYDPLKGSVFMDEQ 1073
P P + ILK +SL G + ++G +G GKST I+ +++ ++ G
Sbjct: 15 VVP--PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE---GEARPAP- 68
Query: 1074 DIRNYNLKQLRSHIALVSQEPTLFAG-TIRENI-------------------AYGKADAR 1113
+ + QEP L T+REN+ AY + DA
Sbjct: 69 ---GIK-------VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDAD 118
Query: 1114 ESE-IKKAAVL------ANAHEFISGMKDGYDTY-C--GERGV-QLSGGQKQRIALARAI 1162
+ L A+A + S ++ D C + V +LSGG+++R+AL R +
Sbjct: 119 FDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLL 178
Query: 1163 LKNPSILLLDEATSALD--SVS 1182
L+ P +LLLDE T+ LD SV+
Sbjct: 179 LEKPDMLLLDEPTNHLDAESVA 200
|
Length = 556 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 12/237 (5%)
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLL--ERFYDPLKGSVFMDEQDIRNYNL 1080
D+ IL+GL+L++ G+ A++G +G GKST+ L Y+ G+V +D+ +
Sbjct: 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSP 72
Query: 1081 KQLRSH-IALVSQEPTLFAGTIRENIAYGKADA-RESEIKKAAVLANAHEFISG----MK 1134
+ I + Q P G + +A R ++ + + + +K
Sbjct: 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK 132
Query: 1135 DGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM 1194
D V SGG+K+R + + + P + +LDE+ S LD + +V + + +
Sbjct: 133 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLR 192
Query: 1195 MG-RTCVVVAH--RLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
G R+ ++V H R+ K D + V+ GR+V+ G + L G Y L + Q
Sbjct: 193 DGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQG-YGWLTEQQ 248
|
Length = 248 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 63/245 (25%), Positives = 99/245 (40%), Gaps = 70/245 (28%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIR------ 412
D +L L + + V LVG +G+GKST + +L GEVLLD +I
Sbjct: 15 DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILN-------GEVLLDDGRIIYEQDLI 67
Query: 413 --RL-------------------------HLKWLRSQMGLVNQEP---VLFATSITENIL 442
RL +LK LV +P L + + L
Sbjct: 68 VARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQL 127
Query: 443 FGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDP 502
+ +++ I ++ + +L + + L SGG ++ A+ RAL+ +P
Sbjct: 128 DHHNLWQLENRI--------NEVLAQLGLDPDAALSSL----SGGWLRKAALGRALVSNP 175
Query: 503 KILLLDEATSALDAQSERIVQEAID------KVSKGRTTLIIAHRLSTIRT-ANLIMVLK 555
+LLLDE T+ LD E I+ K +G + + I+H S IR A I+ L
Sbjct: 176 DVLLLDEPTNHLDI-------ETIEWLEGFLKTFQG-SIIFISHDRSFIRNMATRIVDLD 227
Query: 556 AGKVV 560
GK+V
Sbjct: 228 RGKLV 232
|
Length = 635 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 47/210 (22%), Positives = 84/210 (40%), Gaps = 53/210 (25%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
L+ L + I V + G SG GKST+ + E Y K +L S
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTL--VNEGLYASGK---------------ARLISF 53
Query: 1087 IALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGV 1146
+ S+ +F ++ F+ + GY T G++
Sbjct: 54 LPKFSRNKLIFIDQLQ--------------------------FLIDVGLGYLTL-GQKLS 86
Query: 1147 QLSGGQKQRIALARAILKNP--SILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVA 1203
LSGG+ QR+ LA + P ++ +LDE ++ L + + E ++ ++ +G T +++
Sbjct: 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIE 146
Query: 1204 HRLSTIQKSDTI------AVIKNGRVVEQG 1227
H L + +D I + G+VV G
Sbjct: 147 HNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-06
Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 38/178 (21%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV-LLDGYKI---RRL 414
D ++L + L + G +GL+G +G+GKST I LL PV GE+ L G K+ +
Sbjct: 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQH 383
Query: 415 HLKWLRSQMGLVNQEPVLFATSITENIL------FGKDGASMDDVISAAKAANAHDFITK 468
L++LR+ + Q A E L FG G
Sbjct: 384 QLEFLRADESPL-QHLARLAPQELEQKLRDYLGGFGFQG--------------------- 421
Query: 469 LPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAI 526
+V + + SGG+K R+ +A + + P +LLLDE T+ LD + + EA+
Sbjct: 422 ------DKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL 473
|
Length = 638 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 52/211 (24%), Positives = 79/211 (37%), Gaps = 53/211 (25%)
Query: 1037 GKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQD----IRNYNLKQLRSHIA---- 1088
G+ + LVG +G GKST + +L P G F D D + + +L+++
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGK-FDDPPDWDEILDEFRGSELQNYFTKLLE 84
Query: 1089 ----------LVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYD 1138
V P G + E + K D R G D
Sbjct: 85 GDVKVIVKPQYVDLIPKAVKGKVGELLK--KKDER------------------GKLDELV 124
Query: 1139 TYCGERGV------QLSGGQKQRIALARAILKNPSILLLDEATSALDS----VSESLVQE 1188
R V QLSGG+ QR+A+A A+ ++ DE +S LD + L++E
Sbjct: 125 DQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRE 184
Query: 1189 ALEKMMMGRTCVVVAHRLSTIQK-SDTIAVI 1218
E +VV H L+ + SD I +
Sbjct: 185 LAED---DNYVLVVEHDLAVLDYLSDYIHCL 212
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 1146 VQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVA 1203
+ LSGG+ QR+A+A A+L+N + L DE ++ LD A+ ++ +T +VV
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 1204 HRLSTIQK-SDTIAVI 1218
H L+ + SD I V
Sbjct: 130 HDLAVLDYLSDRIHVF 145
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 26/92 (28%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 482 FQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIA 539
++++ G+ Q++ IA AL P++L+ DE T+A++ ++ + + ++++ T L+I+
Sbjct: 157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLIS 216
Query: 540 HRLSTI-RTANLIMVLKAGKVVESGSHNELMN 570
H L + + A+ I VL G+ VE+ EL+
Sbjct: 217 HDLQMLSQWADKINVLYCGQTVETAPSKELVT 248
|
Length = 330 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 52/230 (22%), Positives = 105/230 (45%), Gaps = 37/230 (16%)
Query: 1029 GLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDI------------- 1075
++L++ + V+L+G +G GK+T+ L FY P G++ + Q I
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82
Query: 1076 -RNY-NLKQLRSHIA----LVSQ----EPTLFAGTIRENIAYGKADARESEIKKAAVLAN 1125
R + +++ R LV+Q + LF+G ++ A+ R +E + L
Sbjct: 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLK-TPAF-----RRAE---SEALDR 133
Query: 1126 AHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL 1185
A ++ + G + + L+ GQ++R+ +AR ++ P IL+LDE + L+
Sbjct: 134 AATWLERV--GLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKE 191
Query: 1186 VQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
+ E + ++ T +++ H + + SD I V+ G + G+ E+
Sbjct: 192 LDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241
|
Length = 255 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 45/207 (21%)
Query: 1037 GKTVALVGQSGCGKSTIIGLLE--------RFYDP---------LKGSVFMDE-QDIRNY 1078
GK V ++G +G GKST + +L R+ DP +G+ + + +
Sbjct: 100 GKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEG 159
Query: 1079 NLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYD 1138
L+ + V P + G + E + + E+ + L N +
Sbjct: 160 ELRAV-HKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLD---------- 208
Query: 1139 TYCGERGV-QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL-----VQEALEK 1192
R V +LSGG+ QR+A+A A+L++ + DE +S LD + + L ++E E
Sbjct: 209 -----RDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD-IRQRLNAARVIRELAED 262
Query: 1193 MMMGRTCVVVAHRLSTIQK-SDTIAVI 1218
G+ +VV H L+ + SD + ++
Sbjct: 263 ---GKYVIVVEHDLAVLDYLSDFVHIL 286
|
Length = 591 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 40/186 (21%), Positives = 82/186 (44%), Gaps = 29/186 (15%)
Query: 1027 LKGLSLKIEAG-----KTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLK 1081
L +L++E G + + ++G +G GK+T I +L P +G + ++ + +Y +
Sbjct: 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV-SYKPQ 68
Query: 1082 QLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYC 1141
+++ + GT+R+ + + +A + +
Sbjct: 69 YIKAD----------YEGTVRD-LLSSITKDFYTHPYFKTEIAKPLQIEQIL-------- 109
Query: 1142 GERGV-QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMG--RT 1198
+R V +LSGG+ QR+A+A + K+ I LLDE ++ LD + + + + +T
Sbjct: 110 -DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKT 168
Query: 1199 CVVVAH 1204
VV H
Sbjct: 169 AFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 3e-06
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 13/118 (11%)
Query: 450 MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDE 509
+D+V+ + N D I LP G G +S Q++R+ IA L+ +P I+ +DE
Sbjct: 995 VDEVMELVELDNLKDAIVGLP-------GVTG--LSTEQRKRLTIAVELVANPSIIFMDE 1045
Query: 510 ATSALDAQSERIVQEAI-DKVSKGRTTLIIAHRLST-IRTA--NLIMVLKAGKVVESG 563
TS LDA++ IV + + V GRT + H+ S I A L+++ + G+V+ SG
Sbjct: 1046 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 5e-06
Identities = 59/234 (25%), Positives = 102/234 (43%), Gaps = 30/234 (12%)
Query: 990 EIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRP-DQMILKGLSLKIEAGKTVALVGQSGC 1048
E D + G DI +N+ + + ++IL + ++ G AL+G SG
Sbjct: 748 EKDMEKESGEDIF-------HWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGA 800
Query: 1049 GKSTIIGLL-ERFYDPLKGSVFMDEQDIRNYNLKQLRS----HIALVSQE----PTLFAG 1099
GK+T++ +L ER + V R N + L S I V Q+ PT
Sbjct: 801 GKTTLLNVLAER----VTTGVI--TGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTS--- 851
Query: 1100 TIRENIAYGKADARESEIKKAAVLANAHEFIS--GMKDGYDTYCGERGVQLSGGQKQRIA 1157
T+RE++ + + + K+ + E I M+ D G G L+ Q++R+
Sbjct: 852 TVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLT 911
Query: 1158 LARAILKNPSILL-LDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTI 1209
+ ++ P +LL LDE TS LDS + + + + K+ G+ + H+ S I
Sbjct: 912 IGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAI 965
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 9e-06
Identities = 54/225 (24%), Positives = 93/225 (41%), Gaps = 64/225 (28%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IE +N+ + D++++ LS K+ G V ++G +G GKST+ ++ P G++
Sbjct: 323 IEAENLSKGFG---DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHE 1128
+ E +A V Q R+ + K E
Sbjct: 380 KIGET-----------VKLAYVDQS--------RDALDPNK---------------TVWE 405
Query: 1129 FISGMKD-----GYDT----YCG----------ERGVQLSGGQKQRIALARAILKNPSIL 1169
ISG D + Y G ++ QLSGG++ R+ LA+ + ++L
Sbjct: 406 EISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVL 465
Query: 1170 LLDEATSALDSVSESLVQEALEKMMMGRTCVVVAH------RLST 1208
LLDE T+ LD + ++EAL + VV++H R++T
Sbjct: 466 LLDEPTNDLDVETLRALEEALLE--FAGCAVVISHDRWFLDRIAT 508
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 9e-06
Identities = 66/263 (25%), Positives = 108/263 (41%), Gaps = 63/263 (23%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYK------------ 410
L ++ VP G+ VG++G +GSGKST L+ P +G V + G
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99
Query: 411 ---IRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFIT 467
I + LK L MGL ++ I E GK FI
Sbjct: 100 LTGIENIELKGL--MMGLTKEKIKEIIPEIIEFADIGK-------------------FIY 138
Query: 468 KLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAID 527
+ Y S G K R+ A ++ +P IL++DEA S D + ++ +D
Sbjct: 139 QPVKTY-----------SSGMKSRLGFAISVHINPDILVIDEALSVGD---QTFTKKCLD 184
Query: 528 KVS----KGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMV- 581
K++ +G+T I+H LS +++ + L G+V E G E+++ Y + +
Sbjct: 185 KMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD-----HYDEFLK 239
Query: 582 ELQQMASEN--DTSNDTFNDFSH 602
+ QM+ E D + + F H
Sbjct: 240 KYNQMSVEERKDFREEQISQFQH 262
|
Length = 549 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-05
Identities = 58/230 (25%), Positives = 109/230 (47%), Gaps = 21/230 (9%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-PLKGS 1067
+E +N+ P + + +S + G+ + + G G G++ ++ L Y +G+
Sbjct: 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN 317
Query: 1068 VFMDEQ--DIRNYNLKQLRSHIALVSQE-------PTLFAGTIRENIAYGKAD--ARESE 1116
VF++ + DIRN + +R+ IA+V ++ P L G +NI +
Sbjct: 318 VFINGKPVDIRN-PAQAIRAGIAMVPEDRKRHGIVPILGVG---KNITLSVLKSFCFKMR 373
Query: 1117 IKKAAVLANAHEFISGMKDGYDTYCGERGV-QLSGGQKQRIALARAILKNPSILLLDEAT 1175
I AA L I +K T + +LSGG +Q+ LA+ +L NP +L+LDE T
Sbjct: 374 IDAAAELQIIGSAIQRLK--VKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPT 431
Query: 1176 SALDSVSESLVQEALEKMMM-GRTCVVVAHRLSTIQK-SDTIAVIKNGRV 1223
+D ++ + + + ++ G +VV+ L+ + SD + VI G++
Sbjct: 432 RGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 1e-05
Identities = 89/414 (21%), Positives = 165/414 (39%), Gaps = 56/414 (13%)
Query: 149 AYLSTFFFCLLFSFIL--SWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGG 206
AY S L + ++ W + P + +F VP + L + I S
Sbjct: 1753 AYTSPENLPALVALLMLYGWAVIPMMYPASFLFDVPSTAYVALSCANLFIGINS------ 1806
Query: 207 IAEQAVSSIRTVYSYVAEHETLIRFSNALQKTM----ELGIKQGFIKGLLMGSMGMIYVG 262
S+I V + TL+RF+ L+K + + +G I L ++ +Y
Sbjct: 1807 ------SAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQAVTDVYAQ 1860
Query: 263 WAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMV 322
+ + + G+ ++ V GV + LT + + +R
Sbjct: 1861 FGEEHSANPFQWDLIGKNLVAMAVEGVVYFL-----------LTLLIQHHFFLSRWIAEP 1909
Query: 323 DRTPAIDTDDKMGKALSYV-----RGEI----EFRDVYFCYPSRPDTLVLQGLNLRVPAG 373
+ P D DD + + + + +I E VY S + + L + V G
Sbjct: 1910 AKEPIFDEDDDVAEERQRIISGGNKTDILRLNELTKVY----SGTSSPAVDRLCVGVRPG 1965
Query: 374 KSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLF 433
+ GL+G +G+GK+TT +L G+ + G I ++ + MG Q +
Sbjct: 1966 ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQFDAI- 2023
Query: 434 ATSITENILFGKDG----ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQK 489
+++L G++ A + V + A+ I L G +L SGG K
Sbjct: 2024 -----DDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSL--GLSLYADRLAGTYSGGNK 2076
Query: 490 QRIAIARALIRDPKILLLDEATSALDAQSERIVQEAI-DKVSKGRTTLIIAHRL 542
++++ A ALI P ++LLDE T+ +D Q+ R++ I + +GR ++ +H +
Sbjct: 2077 RKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM 2130
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 24/234 (10%)
Query: 346 EFRDVYFCYPSRPDTLV-LQGLNLRVPAGKSVGLVGGSGSGKSTTI-ALLQRFYDPV--E 401
+R++ + + + V L ++ V G L+G SG+GK+T + L +R V
Sbjct: 761 HWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITG 820
Query: 402 GEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATS-ITENILFGKDGASMDDVISAAKAA 460
G+ L++G R L + RS +G V Q+ + TS + E++ F A + S +K+
Sbjct: 821 GDRLVNG---RPLDSSFQRS-IGYVQQQDLHLPTSTVRESLRFS---AYLRQPKSVSKS- 872
Query: 461 NAHDFITKLPDGYETQ------VGQLGFQMSGGQKQRIAIARALIRDPKILL-LDEATSA 513
+++ ++ E + VG G ++ Q++R+ I L+ PK+LL LDE TS
Sbjct: 873 EKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSG 932
Query: 514 LDAQSERIVQEAIDKVSK-GRTTLIIAHRLSTIRTA---NLIMVLKAGKVVESG 563
LD+Q+ + + + K++ G+ L H+ S I L+++ K G+ V G
Sbjct: 933 LDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFG 986
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 51/205 (24%), Positives = 98/205 (47%), Gaps = 12/205 (5%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ-LRS 1085
L ++LK+ AL+G++G GKST++ L Y GS+ ++I + K+ L +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73
Query: 1086 HIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGER 1144
I++V QE L ++ +N+ G+ + + + + + + D +
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDEL--DIDIDPRAK 131
Query: 1145 GVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALE--KMMMGRTC--V 1200
LS Q Q I +A+A N I+++DE TS S++E V + + R C V
Sbjct: 132 VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS---SLTEKEVNHLFTIIRKLKERGCGIV 188
Query: 1201 VVAHRLSTI-QKSDTIAVIKNGRVV 1224
++H++ I Q D I ++++G+ +
Sbjct: 189 YISHKMEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 57/214 (26%), Positives = 89/214 (41%), Gaps = 44/214 (20%)
Query: 1000 DIKRQMRGRIELKNVF-----------------FAY-PTRPDQMILKGLSLKIEAGKTVA 1041
DI M GR EL ++ A+ P P + +S + G+ +
Sbjct: 234 DIITMMVGR-ELTALYPREPHTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILG 292
Query: 1042 LVGQSGCGK----STIIGLLERFYDPLKGSVFMDEQ--DIRNYNLKQLRSHIALVSQE-- 1093
+ G G G+ + G + +G +F+D + IRN + + IA+V ++
Sbjct: 293 IAGLVGAGRTELVQCLFGAYPGRW---EGEIFIDGKPVKIRN-PQQAIAQGIAMVPEDRK 348
Query: 1094 -----PTLFAGTIRENIAYGKAD--ARESEIKKAAVLANAHEFISGMKDGYDTYCGERGV 1146
P + G +NI D S I AA L E I +K T E +
Sbjct: 349 RDGIVPVMGVG---KNITLAALDRFTGGSRIDDAAELKTILESIQRLK--VKTASPELAI 403
Query: 1147 -QLSGGQKQRIALARAILKNPSILLLDEATSALD 1179
+LSGG +Q+ LA+ +L NP IL+LDE T +D
Sbjct: 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437
|
Length = 506 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 52/201 (25%)
Query: 373 GKSVGLVGGSGSGKSTTIALLQ--------RFYDPVEGEVLLDGY--------------- 409
GK VG++G +G GKST + +L R+ DP + ++ +
Sbjct: 100 GKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEG 159
Query: 410 KIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASM-DDVISAAKAANAHDFITK 468
++R +H + Q V+ P + + E +L D D+V+ N D
Sbjct: 160 ELRAVH----KPQY--VDLIPKVVKGKVGE-LLKKVDERGKFDEVVERLGLENVLD---- 208
Query: 469 LPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE----RIVQE 524
V +L SGG+ QR+AIA AL+RD + DE +S LD + R+++E
Sbjct: 209 ------RDVSEL----SGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRE 258
Query: 525 AIDKVSKGRTTLIIAHRLSTI 545
G+ +++ H L+ +
Sbjct: 259 L---AEDGKYVIVVEHDLAVL 276
|
Length = 591 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 54/216 (25%), Positives = 84/216 (38%), Gaps = 26/216 (12%)
Query: 1031 SLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL------- 1083
SL + AG + A VG +G GKS + L L G I + +QL
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82
Query: 1084 --RSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLAN-AHEFISGMKDGYDTY 1140
R++ ++S T E I + E+K A A +F G
Sbjct: 83 WQRNNTDMLSPGEDDTGRTTAEII--------QDEVKDPARCEQLAQQF------GITAL 128
Query: 1141 CGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM-GRTC 1199
R LS G+ ++ L +A++ P +L+LDE LD S + E L + G T
Sbjct: 129 LDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITL 188
Query: 1200 VVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
V+V +R I V+ + + E G E++
Sbjct: 189 VLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224
|
Length = 490 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-05
Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 42/205 (20%)
Query: 1027 LKGLSLKIEAGK-----TVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLK 1081
L SL++E G+ + +VG +G GK+T LL P +G V + +++
Sbjct: 350 LGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV---DPELK----- 401
Query: 1082 QLRSHIALVSQEP----TLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMK--D 1135
+S +P + GT+ + + D S K E I ++
Sbjct: 402 --------ISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYK--------SEIIKPLQLER 445
Query: 1136 GYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM 1195
D + LSGG+ QR+A+A + ++ + LLDE ++ LD V +A+ ++
Sbjct: 446 LLDKNVKD----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAE 501
Query: 1196 GR--TCVVVAHRLSTIQK-SDTIAV 1217
R T +VV H + I SD + V
Sbjct: 502 EREATALVVDHDIYMIDYISDRLMV 526
|
Length = 590 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 14/110 (12%)
Query: 468 KLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD--AQSERIVQEA 525
K P G+ TQ+G L SGG +Q++ I R L+ P+IL+LDE T +D A+ E I Q
Sbjct: 381 KTP-GHRTQIGSL----SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFE-IYQLI 434
Query: 526 IDKVSKGRTTLIIAHRL-STIRTANLIMVLKAGKV---VESG--SHNELM 569
+ K + +II+ + + + I+V+ G V V++ + NE++
Sbjct: 435 AELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTTTQNEIL 484
|
Length = 491 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-05
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 17/110 (15%)
Query: 472 GYETQVGQLGFQMSGGQKQRIAIARALIRD---PKILLLDEATSALD----AQSERIVQE 524
GY ++GQ +SGG+ QRI +A+ L + + +LDE T+ L + ++Q
Sbjct: 819 GY-IRLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQR 877
Query: 525 AIDKVSKGRTTLIIAHRLSTIRTANLIMVL------KAGKVVESGSHNEL 568
+DK G T ++I H L I+TA+ I+ L G VV SG+ E+
Sbjct: 878 LVDK---GNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTVVASGTPEEV 924
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 46/188 (24%)
Query: 1021 RPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNL 1080
R +++L + I G+ V LVG++GCGKST++ L LK + D +Y
Sbjct: 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLAL-------LKNEI---SADGGSYTF 60
Query: 1081 KQLRSHIALVSQE-PTLFAGTI-------RE--------NIA------------YGKADA 1112
+A V+QE P L + RE + A +GK DA
Sbjct: 61 PGNWQ-LAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDA 119
Query: 1113 RESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQ-LSGGQKQRIALARAILKNPSILLL 1171
I + + A + G+ G+ ER V SGG + R+ LA+A++ +LLL
Sbjct: 120 ----IDAWTIRSRAASLLHGL--GFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLL 173
Query: 1172 DEATSALD 1179
DE T+ LD
Sbjct: 174 DEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 484 MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHR 541
+SGG+ QR+AIA AL+R+ L DE ++ LD + AI ++S+ +T L++ H
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131
Query: 542 LSTI 545
L+ +
Sbjct: 132 LAVL 135
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-05
Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 22/217 (10%)
Query: 356 SRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH 415
S P L +NL+V L+G +G+GKST + L Y G +L G +I
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 416 LK-WLRSQMGLVNQE-PVLFATSITENILFG---KDGASMDD--VISAAKAANAHDFITK 468
K L + + +V+QE ++ S+ +N+ G G +D + KA I
Sbjct: 67 SKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI 126
Query: 469 LPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQ---EA 525
P +V L S Q Q I IA+A + KI+++DE TS+L +E+ V
Sbjct: 127 DP---RAKVATL----SVSQMQMIEIAKAFSYNAKIVIMDEPTSSL---TEKEVNHLFTI 176
Query: 526 IDKV-SKGRTTLIIAHRLSTI-RTANLIMVLKAGKVV 560
I K+ +G + I+H++ I + + I +L+ G+ +
Sbjct: 177 IRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 65/236 (27%), Positives = 99/236 (41%), Gaps = 52/236 (22%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
LK + + I G + G SG GKS++I + Y L + + ++ N++ + H
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLIN--DTLYPALARRLHLKKEQPGNHDRIEGLEH 68
Query: 1087 I---ALVSQEP------------TLFAGTIRE---NIAYGKADARES-EIKK-----AAV 1122
I ++ Q P T IRE + GK RE+ E++ A V
Sbjct: 69 IDKVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADV 128
Query: 1123 LA----NAHEF---ISGMKDGYDTYC---------GERGVQLSGGQKQRIALARAILK-- 1164
L A EF I + T C G+ LSGG+ QRI LA+ + K
Sbjct: 129 LDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRS 188
Query: 1165 -NPSILLLDEATSAL--DSVSESLV--QEALEKMMMGRTCVVVAHRLSTIQKSDTI 1215
++ +LDE T+ L V + L Q ++K G T VV+ H L I+ +D I
Sbjct: 189 TGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK---GNTVVVIEHNLDVIKCADWI 241
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 4e-05
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 1111 DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILL 1170
DA +E + A++LA F M+ + SGG + RIALARA+ P +LL
Sbjct: 316 DAYTAEARAASILAGL-SFTPEMQV-------KATKTFSGGWRMRIALARALFIEPDLLL 367
Query: 1171 LDEATSALDSVSESLVQEALEKMMMGRTCVVVAH 1204
LDE T+ LD + ++ L K +T +VV+H
Sbjct: 368 LDEPTNHLDLHAVLWLETYLLK--WPKTFIVVSH 399
|
Length = 718 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-05
Identities = 49/201 (24%), Positives = 85/201 (42%), Gaps = 51/201 (25%)
Query: 1027 LKGLSLKIEAGK-----TVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLK 1081
L++E G+ + ++G +G GK+T + LL P +GS E+D++
Sbjct: 352 YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDLK----- 402
Query: 1082 QLRSHIALVSQEP----TLFAGTIRENIAYGKADAR------ESEIKKAAVLANAHEFIS 1131
VS +P + GT+ + + + ++EI K L
Sbjct: 403 --------VSYKPQYISPDYDGTVEDLL-RSAIRSAFGSSYFKTEIVKPLNLE------- 446
Query: 1132 GMKDGYDTYCGERGVQ-LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEAL 1190
D ER V LSGG+ QR+A+A A+ + + LLDE ++ LD +V + +
Sbjct: 447 ------DLL--ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVI 498
Query: 1191 EKMMMGR--TCVVVAHRLSTI 1209
+ + T +VV H + I
Sbjct: 499 RRFIENNEKTALVVDHDIYMI 519
|
Length = 591 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 4e-05
Identities = 56/181 (30%), Positives = 78/181 (43%), Gaps = 46/181 (25%)
Query: 1031 SLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ-------- 1082
S+K G L+G +GCGKST + +L +P G+V +D + R L+Q
Sbjct: 21 SVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP-NERLGKLRQDQFAFEEF 79
Query: 1083 ------LRSHIAL--VSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMK 1134
+ H L V QE R+ I Y + E + K A L E
Sbjct: 80 TVLDTVIMGHTELWEVKQE--------RDRI-YALPEMSEEDGMKVADL----EVKFAEM 126
Query: 1135 DGY--DTYCGE--RGV------------QLSGGQKQRIALARAILKNPSILLLDEATSAL 1178
DGY + GE GV +++ G K R+ LA+A+ NP ILLLDE T+ L
Sbjct: 127 DGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNL 186
Query: 1179 D 1179
D
Sbjct: 187 D 187
|
Length = 530 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 5e-05
Identities = 48/166 (28%), Positives = 71/166 (42%), Gaps = 34/166 (20%)
Query: 373 GKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVL 432
G+ VGLVG +G GKST +ALL+ E+ DG W Q+ VNQE
Sbjct: 27 GQKVGLVGKNGCGKSTLLALLK-------NEISADGGSY-TFPGNW---QLAWVNQETPA 75
Query: 433 FATSITENILFG-KDGASMDDVISAAKAANAHDFITKLP------DGYETQ------VGQ 479
E ++ G ++ ++ + A N I + D + + +
Sbjct: 76 LPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHG 135
Query: 480 LGFQ----------MSGGQKQRIAIARALIRDPKILLLDEATSALD 515
LGF SGG + R+ +A+ALI +LLLDE T+ LD
Sbjct: 136 LGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 5e-05
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS 1085
+L+ ++ G AL+G SG GK+T++ +L K ++ E DIR + +
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLA----GRKTGGYI-EGDIRISGFPKKQE 949
Query: 1086 HIALVS--------QEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFIS--GMKD 1135
A +S P + T+RE++ Y E+ K + E + + +
Sbjct: 950 TFARISGYCEQNDIHSPQV---TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN 1006
Query: 1136 GYDTYCGERGVQ-LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM 1194
D G GV LS Q++R+ +A ++ NPSI+ +DE TS LD+ + ++V + +
Sbjct: 1007 LKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1066
Query: 1195 -MGRTCVVVAHRLS 1207
GRT V H+ S
Sbjct: 1067 DTGRTVVCTIHQPS 1080
|
Length = 1470 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 6e-05
Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 482 FQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIA 539
++++ G+ Q++ IA AL P++L+ DE T++++ ++ + + ++++ T L+I+
Sbjct: 157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLIS 216
Query: 540 HRLSTI-RTANLIMVLKAGKVVESGSHNELM 569
H L I + A+ I VL G+ VES EL+
Sbjct: 217 HDLQMISQWADKINVLYCGQTVESAPSEELV 247
|
Length = 330 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 6e-05
Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 62/212 (29%)
Query: 1002 KRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFY 1061
K+ R +E++N+ + P + K L+L +EAG+ +A++G++G GK+T++ L
Sbjct: 313 KKLHRNALEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL 369
Query: 1062 DPLKGSVFMDE--------QDIRNYNLKQLRSHIALVSQEPTLF--------AG----TI 1101
+P G+V E QD H + TLF G +
Sbjct: 370 EPDSGTVKWSENANIGYYAQD-----------HAYDFENDLTLFDWMSQWRQEGDDEQAV 418
Query: 1102 RENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161
R G+ + +IKK+ + +SG GE+G R+ +
Sbjct: 419 RG--TLGRLLFSQDDIKKSV------KVLSG---------GEKG---------RMLFGKL 452
Query: 1162 ILKNPSILLLDEATSALDSVS-ESLVQEALEK 1192
+++ P++L++DE T+ +D S ESL ALEK
Sbjct: 453 MMQKPNVLVMDEPTNHMDMESIESL-NMALEK 483
|
Length = 530 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 8e-05
Identities = 51/179 (28%), Positives = 69/179 (38%), Gaps = 41/179 (22%)
Query: 373 GKSVGLVGGSGSGKSTTIALL------------QRFYDPVEGEVLLD---------GYKI 411
G+ GLVG +G+GK+T + + Q + VE EV+ D I
Sbjct: 203 GRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILH--VEQEVVGDDTTALQCVLNTDI 260
Query: 412 RRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISA--------------- 456
R L L + LV Q+ L + T D +S
Sbjct: 261 ERTQL--LEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAY 318
Query: 457 AKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD 515
A A + L E QV SGG + RIA+ARAL +P +LLLDE T+ LD
Sbjct: 319 TAEARAASILAGLSFTPEMQVKATK-TFSGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
|
Length = 718 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 49/209 (23%), Positives = 105/209 (50%), Gaps = 35/209 (16%)
Query: 373 GKSVGLVGGSGSGKSTTI-ALLQRFYDPVEGEVLLDGYKIR-RLHLKWLRSQMGLVNQE- 429
G+ +G+ G G+G++ + AL + EG V ++G + R + +R+ + +V ++
Sbjct: 286 GEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDR 345
Query: 430 ------PVL-FATSITENIL--FGK----DGASMDDVISAA----KAANAHDFITKLPDG 472
P+L +IT ++L F D A+ +I +A K A F LP G
Sbjct: 346 KRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPF---LPIG 402
Query: 473 YETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDK-VSK 531
++SGG +Q+ +A+ L+ +P++L+LDE T +D ++ + + I++ +
Sbjct: 403 ----------RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE 452
Query: 532 GRTTLIIAHRLSTIR-TANLIMVLKAGKV 559
G ++++ L+ + ++ ++V+ GK+
Sbjct: 453 GVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 482 FQMSGGQKQRIAIA-----RALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTT 535
Q+SGG+K+ A+A +L P + +LDE LD + + + EAI + KG
Sbjct: 76 LQLSGGEKELSALALILALASLKPRP-LYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 536 LIIAHRLSTIRTANLIMVLK 555
++I H A+ ++ +K
Sbjct: 135 IVITHLPELAELADKLIHIK 154
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IE ++ Y + +L+ ++L + G +GLVG +G+GKST + L+ +P EG V
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 405 LLD 407
Sbjct: 58 TWG 60
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 1148 LSGGQKQRIALARAILKNPS--ILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAH 1204
LSGG+ QRI LA I + + +LDE + L + E L+++ +G T +VV H
Sbjct: 138 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197
Query: 1205 RLSTIQKSDTI------AVIKNGRVVEQG 1227
TI+ +D + A + G +V QG
Sbjct: 198 DEDTIRAADHVIDIGPGAGVHGGEIVAQG 226
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 4e-04
Identities = 48/255 (18%), Positives = 115/255 (45%), Gaps = 35/255 (13%)
Query: 998 GRDIKRQMRGR------------IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQ 1045
GR+++ + E++NV T D+ ++ +S + G+ + G
Sbjct: 243 GRELQNRFNAMKENVSNLAHETVFEVRNV-----TSRDRKKVRDISFSVCRGEILGFAGL 297
Query: 1046 SGCGKSTIIGLLERF-YDPLK-GSVFMDEQDIRNYN-LKQLRSHIALVSQ---EPTLFAG 1099
G G++ ++ L F D G + ++ +DI + L ++ +A +++ + F
Sbjct: 298 VGSGRTELMNCL--FGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355
Query: 1100 -TIRENIAYGKADARESEIKKAAVLANAHE---FISGMKDGYDTYCG---ERGVQLSGGQ 1152
+I +N+A ++ ++ K A L + + ++ C + +LSGG
Sbjct: 356 FSIAQNMAISRS-LKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGN 414
Query: 1153 KQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK 1211
+Q++ +++ + P +++ DE T +D +++ + + + ++ G+ ++V+ L I
Sbjct: 415 QQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIIT 474
Query: 1212 -SDTIAVIKNGRVVE 1225
D IAV GR+ +
Sbjct: 475 VCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-04
Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 22/223 (9%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW 418
DT LQ +L + AG S VG +GSGKS L + GE I RL +
Sbjct: 15 DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQ 74
Query: 419 LRSQMGLVNQEPVLFATSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQ 476
L+ LV+ E + + T+ + G+D G + ++I A + Q
Sbjct: 75 LQK---LVSDE---WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPA------RCEQLAQQ 122
Query: 477 VGQLGF------QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS 530
G +S G+ ++ + +AL+ +P +L+LDE LD S + + E + +
Sbjct: 123 FGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLH 182
Query: 531 KGRTTLI-IAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571
+ TL+ + +R I VL + E+G E++ +
Sbjct: 183 QSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225
|
Length = 490 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 1132 GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALE 1191
G+KD D +L+ G+ Q++ +A A+ P +L+ DE T+A++ +++ + L
Sbjct: 144 GIKDHKDAM-RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLT 202
Query: 1192 KMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIK-- 1246
++ T ++++H L + + +D I V+ G+ VE ELV +LI+
Sbjct: 203 RLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQALIRAI 262
Query: 1247 PQGGSS 1252
P GS+
Sbjct: 263 PDFGSA 268
|
Length = 330 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-04
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 9/56 (16%)
Query: 464 DFIT----KLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD 515
DFI K P E +G L SGG +Q++AIAR L+ PK+L+LDE T +D
Sbjct: 377 DFIRLFNIKTP-SMEQAIGLL----SGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 6e-04
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 20/176 (11%)
Query: 380 GGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH---LKWLRSQMGLVNQEPVLFATS 436
G +G GKS+ + ++ P G + I + ++ +GL + V
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVF---- 88
Query: 437 ITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIAR 496
EN+ F + + + + AA H F KL D + + + +S G ++ +AIAR
Sbjct: 89 --ENLKFWSEIYNSAETLYAA----IHYF--KLHDLLDEKC----YSLSSGMQKIVAIAR 136
Query: 497 ALIRDPKILLLDEATSALDAQSERIVQEAID-KVSKGRTTLIIAHRLSTIRTANLI 551
+ + LLDE + L ++ ++ I K + G L+ +H S+I++A ++
Sbjct: 137 LIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192
|
Length = 195 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 6e-04
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 24/129 (18%)
Query: 459 AANAHDFITKLPD-------------GYETQVGQLGFQMSGGQKQRIAIARALIRDPK-- 503
A +F +P GY ++GQ +SGG+ QR+ +A+ L +
Sbjct: 786 VEEALEFFEAIPKIARKLQTLVDVGLGY-IKLGQPATTLSGGEAQRVKLAKELSKRSTGK 844
Query: 504 -ILLLDEATSALDAQSERIVQEAIDK-VSKGRTTLIIAHRLSTIRTANLIMVL------K 555
+ +LDE T+ L + + E + + V KG T ++I H L I+TA+ I+ L
Sbjct: 845 TLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDG 904
Query: 556 AGKVVESGS 564
G++V SG+
Sbjct: 905 GGEIVASGT 913
|
Length = 935 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-04
Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 1148 LSGGQKQRIAL-ARAILKNPSILLLDEATSALDSVSESLVQEALEKM 1193
LS GQ QR+AL RA++K+P++L+LDE LD ++ LV+ ++ +
Sbjct: 402 LSWGQ-QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVL 447
|
Length = 490 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 9e-04
Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 37/196 (18%)
Query: 343 GEIEFR-DVYFCY-PSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTI-ALLQRFYDP 399
GE+ + P P + ++ + G+ +G+ G G+G++ + L +
Sbjct: 256 GEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGR 315
Query: 400 VEGEVLLDGYKIR-RLHLKWLRSQMGLVNQE-------PVLFATSITENIL------FGK 445
EGE+ +DG ++ R + + + +V ++ PV+ + +NI F
Sbjct: 316 WEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM---GVGKNITLAALDRFTG 372
Query: 446 DGASMDDVISAAKAANAHDFITKL------PDGYETQVGQLGFQMSGGQKQRIAIARALI 499
G+ +DD AA+ + I +L P E + +L SGG +Q+ +A+ L+
Sbjct: 373 -GSRIDD---AAELKTILESIQRLKVKTASP---ELAIARL----SGGNQQKAVLAKCLL 421
Query: 500 RDPKILLLDEATSALD 515
+PKIL+LDE T +D
Sbjct: 422 LNPKILILDEPTRGID 437
|
Length = 506 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 9e-04
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 992 DPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKS 1051
+PD P R RI L N +Y RP IL LS ++ G+ +VG +G GKS
Sbjct: 244 EPDEPSARHALPANEPRIVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGKS 300
Query: 1052 TIIGLL 1057
T++ L+
Sbjct: 301 TLLSLI 306
|
Length = 490 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 1148 LSGGQKQRIALARAILK---NPSILLLDEATSAL--DSVSESL--VQEALEKMMMGRTCV 1200
LSGG+ QRI LA+ + K ++ +LDE T+ L D + + L +Q ++K G T V
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDK---GNTVV 886
Query: 1201 VVAHRLSTIQKSDTIAVI------KNGRVVEQGSHNEL 1232
V+ H L I+ +D I + G VV G+ E+
Sbjct: 887 VIEHNLDVIKTADYIIDLGPEGGDGGGTVVASGTPEEV 924
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 22/163 (13%)
Query: 1030 LSLKIEAGKTVALVGQSGCGKSTIIGLLERFY---DPLKGSVFMDEQDIRNYNLKQLRSH 1086
+SL++ AG+ + L G G G++ L E Y G + ++ ++I + Q R
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTE---LAETLYGLRPARGGRIMLNGKEINALSTAQ-RLA 337
Query: 1087 IALV-----SQEPTLFA-GTIRENI---AYGKADARESEIKKAAVLANAHEFISGMKDGY 1137
LV Q L+ + N+ + + ++ AVL + +K +
Sbjct: 338 RGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRAL-NIKFNH 396
Query: 1138 DTYCGERGVQ-LSGGQKQRIALARAILKNPSILLLDEATSALD 1179
E+ + LSGG +Q++ +A+ + +P +L++DE T +D
Sbjct: 397 ----AEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435
|
Length = 510 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 1148 LSGGQKQRIALARAILKNPSILLLDEATSALDSVSE-SLVQEALEKMMMGRTCVVVAHRL 1206
LSGG +Q++ + R +L P IL+LDE T +D ++ + Q E + ++++ +
Sbjct: 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM 451
Query: 1207 STIQK-SDTIAVIKNGRVV-----EQGSHNELVALS 1236
+ +D I V+ NG V + + NE++ L+
Sbjct: 452 PELLGITDRILVMSNGLVAGIVDTKTTTQNEILRLA 487
|
Length = 491 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 1148 LSGGQKQRIALARAILK---NPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVA 1203
LSGG+ QR+ LA+ + K ++ +LDE T+ L + E L +++ G T +V+
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 1204 HRLSTIQKSDTIAVI------KNGRVVEQGSHNELVA 1234
H L I+ +D I + G +V G+ E+
Sbjct: 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919
|
Length = 935 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.003
Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 487 GQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAH 540
G K R+ +A+AL +P ILLLDE T+ LD + R +++ +++ + T +II+H
Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISH 210
|
Length = 530 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 1146 VQLSGGQKQRIALARAI----LKNPSILLLDEATSALDSVSESLVQEALEKMMM-GRTCV 1200
+QLSGG+K+ ALA + LK + +LDE LD + EA+ + ++ G +
Sbjct: 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135
Query: 1201 VVAHRLSTIQKSDTIAVIK 1219
V+ H + +D + IK
Sbjct: 136 VITHLPELAELADKLIHIK 154
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.003
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 15/97 (15%)
Query: 1148 LSGGQKQRIALARAILKNPSILL--LDEATSAL---DSVSESLVQEALEKMM-MGRTCVV 1201
LSGG+ QRI LA I + +L LDE + L D +E L+ E L+++ +G T +V
Sbjct: 482 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRD--NERLI-ETLKRLRDLGNTVIV 538
Query: 1202 VAHRLSTIQKSDTI------AVIKNGRVVEQGSHNEL 1232
V H TI+ +D I A G +V +G+ EL
Sbjct: 539 VEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEEL 575
|
Length = 935 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 50/237 (21%), Positives = 102/237 (43%), Gaps = 25/237 (10%)
Query: 356 SRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIR-RL 414
+ D ++ ++ V G+ +G G GSG++ + L GE+ L+G I R
Sbjct: 272 TSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRS 331
Query: 415 HLKWLRSQMGLVNQ---EPVLFAT-SITENILF------GKDGASM---DDVISAAKAAN 461
L ++ M + + + F SI +N+ G +M +V A N
Sbjct: 332 PLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAEN 391
Query: 462 AHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERI 521
+ + + +L SGG +Q++ I++ L P++++ DE T +D ++
Sbjct: 392 QRELLALKCHSVNQNITEL----SGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAE 447
Query: 522 VQEAIDKVS-KGRTTLIIAHRLSTIRTA-NLIMVLKAGKVVESGSHNELMNRGEGGE 576
+ + + +++ G+ L+++ L I T + I V G++ + L NR + E
Sbjct: 448 IYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ-----ILTNRDDMSE 499
|
Length = 510 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 61/209 (29%)
Query: 1041 ALVGQSGCGKSTII--------GLLERFYDPLKGSVFMDEQDIR-NYNLKQLR---SHIA 1088
+VGQ+G GK+TII G L D + IR Q++ +
Sbjct: 26 LIVGQNGAGKTTIIEALKYALTGELPPNSK----GGAHDPKLIREGEVRAQVKLAFENAN 81
Query: 1089 ----LVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGER 1144
+++ + EN+ + + E + R
Sbjct: 82 GKKYTITRSLAIL-----ENVIF----CHQGESNWPLLD-------------------MR 113
Query: 1145 GVQLSGGQKQ------RIALARAILKNPSILLLDEATSALD--SVSESLVQEALEKM--M 1194
G + SGG+K R+ALA N IL LDE T+ LD ++ ESL E +E+
Sbjct: 114 G-RCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLA-EIIEERKSQ 171
Query: 1195 MGRTCVVVAHRLSTIQKSDTI-AVIKNGR 1222
+V+ H + +D I V K+GR
Sbjct: 172 KNFQLIVITHDEELVDAADHIYRVEKDGR 200
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 1036 AGKTVALVGQSGCGKSTIIGLL 1057
GKT L GQSG GKST++ L
Sbjct: 34 KGKTSVLAGQSGVGKSTLLNAL 55
|
Length = 161 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 60/235 (25%), Positives = 94/235 (40%), Gaps = 52/235 (22%)
Query: 1013 NVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST---IIGLLERFYDPLKGSVF 1069
FFA L +SLK G + LVG +G GKST IIG GS+
Sbjct: 35 KTFFA---------LDDISLKAYEGDVIGLVGINGSGKSTLSNIIG----------GSLS 75
Query: 1070 MDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGK--ADARESEIKKAAV----L 1123
+ S IA+ + G ENI + + EIK
Sbjct: 76 PTVGKVDRNGEV---SVIAISAGLSGQLTGI--ENIEFKMLCMGFKRKEIKAMTPKIIEF 130
Query: 1124 ANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183
+ EFI Y S G + ++ + I NP IL++DEA S D +
Sbjct: 131 SELGEFIYQPVKKY-----------SSGMRAKLGFSINITVNPDILVIDEALSVGD---Q 176
Query: 1184 SLVQEALEKMM----MGRTCVVVAHRLSTIQKSDT-IAVIKNGRVVEQGSHNELV 1233
+ Q+ L+K+ +T V+H L +++ T IA I+ G++ + G ++++
Sbjct: 177 TFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL 231
|
Length = 264 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.004
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 1036 AGKTVALVGQSGCGKSTIIGLL 1057
GKT LVGQSG GKST++ L
Sbjct: 84 KGKTSVLVGQSGVGKSTLLNAL 105
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1255 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-220 Score=1996.99 Aligned_cols=1213 Identities=49% Similarity=0.802 Sum_probs=1112.0
Q ss_pred chHHHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 3 GNDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEG 82 (1255)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1255)
++.+||+|+.+.|+.++++|++++++.|+..|++.++++.++|.+...... ...+....+++.+++++++.++..|++.
T Consensus 14 ~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~-~~~~~~~~~~l~~~~lg~~~~~~~~~q~ 92 (1228)
T KOG0055|consen 14 SFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNK-IASSEVSKVALYFVYLGVGVFISGFIQV 92 (1228)
T ss_pred chHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999987644321 1113567788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 83 LCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSF 162 (1255)
Q Consensus 83 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (1255)
.||.+.++|+..++|.+++++++||+++|||. +.+|++.+++++|++.|+++++++++.+++.+.+++.++++.|
T Consensus 93 ~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~-----~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F 167 (1228)
T KOG0055|consen 93 SCWMRTGERQTARIRSKYLKAILRQDIGWFDT-----NSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGF 167 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccceeec-----ccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 4558999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 000846 163 ILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELG 242 (1255)
Q Consensus 163 ~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~ 242 (1255)
+..|+|+++++++.|++++....+.+.+.+...+.+++++++.++++|++.+||||.+|+.|+.+.+||.+..+...+.+
T Consensus 168 ~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~g 247 (1228)
T KOG0055|consen 168 YYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFG 247 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 243 IKQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEM 321 (1255)
Q Consensus 243 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 321 (1255)
++.+.+.++..+++ ++.+..+++.+|||+.++.++..++|.+++++++++.+...+.+..|++..+..+++|+.+|++.
T Consensus 248 i~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~ 327 (1228)
T KOG0055|consen 248 IKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFET 327 (1228)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHH
Confidence 99999999999888 78889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCc
Q 000846 322 VDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVE 401 (1255)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~ 401 (1255)
++..|++++....+......+|.|+|+||+|+||++|+.++|+|+||+|++||++||||||||||||++++|.|+|+|++
T Consensus 328 i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~ 407 (1228)
T KOG0055|consen 328 IDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTS 407 (1228)
T ss_pred hcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 99988877654333344567899999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCC
Q 000846 402 GEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLG 481 (1255)
Q Consensus 402 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 481 (1255)
|+|++||.|+++++.+|+|++||+|.|||.||++||+|||.||+|+++.+++.+||+++++++|+..||+||+|.+||+|
T Consensus 408 G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g 487 (1228)
T KOG0055|consen 408 GEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERG 487 (1228)
T ss_pred ceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEE
Q 000846 482 FQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVE 561 (1255)
Q Consensus 482 ~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 561 (1255)
.+|||||||||||||||++||+||||||||||||+++|+.++++|+++.+|||+|+|||||+++++||+|+||++|+|+|
T Consensus 488 ~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE 567 (1228)
T KOG0055|consen 488 VQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVE 567 (1228)
T ss_pred CCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhccCCCChhHHHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCCCCCCcCC
Q 000846 562 SGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVG 641 (1255)
Q Consensus 562 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (1255)
.|+|+||++. .|.|++|++.|+.....+..++..+..... .. ... .+. ......+ .
T Consensus 568 ~G~h~ELi~~--~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~-------~~-s~~--~s~-----~~~~~~~-------~ 623 (1228)
T KOG0055|consen 568 QGTHDELIAL--GGIYSSLVRLQELEKAAEDEEEEESLKEER-------SR-SLK--SSS-----SSPSLSR-------G 623 (1228)
T ss_pred ecCHHHHHhc--cchHHHHHHHHhhhhhhhccccccchhhhh-------hh-ccc--ccc-----ccccccC-------C
Confidence 9999999996 499999999987655332100000000000 00 000 000 0000000 0
Q ss_pred CCCcccccCCCCCCCccccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhh
Q 000846 642 TPYSYTIQYDPDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEI 721 (1255)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 721 (1255)
...........+++...... ........+++++++.+|+|+++++|++++++.|+.+|++++.++.++..+...+++..
T Consensus 624 ~~~~~~~~~~~~~e~~~~~~-~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~ 702 (1228)
T KOG0055|consen 624 SNRSNLLSVKPEGEDPEEPV-SEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDEL 702 (1228)
T ss_pred cccccccccccccccccccc-ccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHH
Confidence 00000000000000000000 11124567999999999999999999999999999999999999999999987766655
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHH
Q 000846 722 KSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSL 801 (1255)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~ 801 (1255)
......|+++|++++++..+..++++|++.+++++++.|+|.++|+++++++++|||+++|+ |.+.+|+.+|+..++..
T Consensus 703 ~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~ 781 (1228)
T KOG0055|consen 703 KREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAA 781 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHH
Confidence 55555699999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHH
Q 000846 802 VGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTIT 881 (1255)
Q Consensus 802 ~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr 881 (1255)
++..+..+++++..++++++++|+++|+++++++++.|++++..+.+.+++.....+.++..++....+.|++.|++||+
T Consensus 782 v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~ 861 (1228)
T KOG0055|consen 782 VGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVA 861 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 000846 882 AFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVI 961 (1255)
Q Consensus 882 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1255)
+|+.|+++.+.|.+.++...+...++.++.++.+++++++.++.+++++|||++++.+|.+++.+++.+++++.+.+..+
T Consensus 862 al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~ 941 (1228)
T KOG0055|consen 862 ALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMAL 941 (1228)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEE
Q 000846 962 AEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVA 1041 (1255)
Q Consensus 962 ~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~va 1041 (1255)
++..++.|++.++..|+.+++++++++|+.++..+.+ ...++.+|+|+|+||+|+||+||+.+||+|+||+|++||++|
T Consensus 942 ~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~-~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvA 1020 (1228)
T KOG0055|consen 942 GQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSG-GKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVA 1020 (1228)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCC-CccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEE
Confidence 9999999999999999999999999999776654222 122347899999999999999999999999999999999999
Q ss_pred EEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHH
Q 000846 1042 LVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAA 1121 (1255)
Q Consensus 1042 IVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al 1121 (1255)
|||||||||||++.||.|||||++|.|.|||+||+++++++||++||+|+|||.||++||||||+||..+++++||.+|+
T Consensus 1021 LVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aa 1100 (1228)
T KOG0055|consen 1021 LVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAA 1100 (1228)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999996669999999999
Q ss_pred HHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 000846 1122 VLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVV 1201 (1255)
Q Consensus 1122 ~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~ 1201 (1255)
+.|++|+||.+||+||||.|||+|.+||||||||||||||++|||+||||||||||||.++|+.||++|+++..|||+|+
T Consensus 1101 k~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~Iv 1180 (1228)
T KOG0055|consen 1101 KLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIV 1180 (1228)
T ss_pred HHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCchhhhhcCEEEEEeCCEEEEecCHHHHHhhhcCchhHHHHhhhcC
Q 000846 1202 VAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGG 1250 (1255)
Q Consensus 1202 IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~~ 1250 (1255)
|||||+||++||.|+|+++|+|+|+|||++|+++ +|.|++|++.|..
T Consensus 1181 IAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~--~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1181 IAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAK--RGIYFRLVQLQSS 1227 (1228)
T ss_pred EecchhhhhcCCEEEEEECCEEEecccHHHHHhC--CCchHHHhhhccC
Confidence 9999999999999999999999999999999985 9999999998863
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-175 Score=1728.12 Aligned_cols=1222 Identities=29% Similarity=0.479 Sum_probs=1019.6
Q ss_pred chHHHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 3 GNDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEG 82 (1255)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1255)
+++++|+|+.++++.+++++++++++.++..|+++++++.++|.+... ..+..+++.+++++++.+++.+++.
T Consensus 46 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~ 118 (1466)
T PTZ00265 46 PFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG-------ENVNDIIFSLVLIGIFQFILSFISS 118 (1466)
T ss_pred cHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999998999999999999999999999999999976421 1234445566777888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 83 LCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSF 162 (1255)
Q Consensus 83 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (1255)
+++.+.++++..++|.++|++++++|++|||. .++|++++++++|++.+++.+...+..++..+++++++++++|
T Consensus 119 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~-----~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~ 193 (1466)
T PTZ00265 119 FCMDVVTTKILKTLKLEFLKSVFYQDGQFHDN-----NPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSL 193 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 000846 163 ILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELG 242 (1255)
Q Consensus 163 ~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~ 242 (1255)
+++|+|++++++++|+++++..++.+++++..++.++..++..+.++|.++|+++||+|+.|+.+.++|.+..+...+..
T Consensus 194 ~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~ 273 (1466)
T PTZ00265 194 FKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI 273 (1466)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 243 IKQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEK--------GEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKV 313 (1255)
Q Consensus 243 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (1255)
.+.....++..++. ++.++++++++|+|++++.+| .+++|.+++++++.+.....+..+.+.+..++.+..
T Consensus 274 ~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~ 353 (1466)
T PTZ00265 274 LKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLE 353 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888877666 556777889999999999875 578899988887777767777778888999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHH
Q 000846 314 AATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALL 393 (1255)
Q Consensus 314 a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l 393 (1255)
|++||+++++.+++.+... .+...+. .+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|
T Consensus 354 a~~ri~~ii~~~~~~~~~~-~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL 431 (1466)
T PTZ00265 354 ATNSLYEIINRKPLVENND-DGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLI 431 (1466)
T ss_pred HHHHHHHHHcCCCCCCCCC-CCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 9999999999876543211 1111122 2479999999999865555799999999999999999999999999999999
Q ss_pred hcccCCCccEEEE-CCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCC--------------------------
Q 000846 394 QRFYDPVEGEVLL-DGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKD-------------------------- 446 (1255)
Q Consensus 394 ~g~~~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~-------------------------- 446 (1255)
+|+|+|++|+|++ ||+++++++.+++|++||||+|+|.||++||+|||.+|..
T Consensus 432 ~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (1466)
T PTZ00265 432 ERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKR 511 (1466)
T ss_pred HHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccc
Confidence 9999999999999 5799999999999999999999999999999999999741
Q ss_pred -------------------------------CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHH
Q 000846 447 -------------------------------GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIA 495 (1255)
Q Consensus 447 -------------------------------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lA 495 (1255)
+.++++++++++.+++++++.++|+|++|.+|++|.+|||||||||+||
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIA 591 (1466)
T PTZ00265 512 NSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIA 591 (1466)
T ss_pred ccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHH
Confidence 2456789999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCC----------------
Q 000846 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIRTANLIMVLKAG---------------- 557 (1255)
Q Consensus 496 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G---------------- 557 (1255)
|||+++|+|||||||||+||+++++.+++.|+++. +|+|+|+||||+++++.||+|++|++|
T Consensus 592 RAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~ 671 (1466)
T PTZ00265 592 RAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPT 671 (1466)
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccc
Confidence 99999999999999999999999999999999985 489999999999999999999999986
Q ss_pred -------------------------------EEEEecChhHHhccCCCChhHHHHHHHhhcccCCCCCCCcCCccchhhh
Q 000846 558 -------------------------------KVVESGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQMDA 606 (1255)
Q Consensus 558 -------------------------------~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (1255)
+|+|+|+|+||++. ..|.|+.+++.|.........+....+.......
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~-~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~ 750 (1466)
T PTZ00265 672 KDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKN-KNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSA 750 (1466)
T ss_pred ccccccccccccccccccccccccccccCCceeEeeCCHHHHHhc-cCCcHHHHHhhhcccccccccccccccccccccc
Confidence 59999999999974 4799999998775432111000000000000000
Q ss_pred hhhhhccCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCcccccCCCCCCCcc----ccccccCCCchHHHHHHHHhchhh
Q 000846 607 INLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDPDDDSLG----DRIDQSSYATPSQWRLLKINMPEW 682 (1255)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1255)
... . ................. .................+...+... +..+........+++++++.++.+
T Consensus 751 ~~~-~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1466)
T PTZ00265 751 YKD-S--ERGYDPDEMNGNSKHEN---ESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYK 824 (1466)
T ss_pred ccc-c--ccccccccccccccccc---cccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHH
Confidence 000 0 00000000000000000 0000000000000000000000000 000000111123455666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 683 GSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVR 762 (1255)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr 762 (1255)
+.++++++++++.+++.|+++++++.+++.++.. .........|++++++++++..++.+++.++..++++++..++|
T Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR 902 (1466)
T PTZ00265 825 KDVTIIALSILVAGGLYPVFALLYAKYVSTLFDF--ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMK 902 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999876532 12223345677888888899999999999999999999999999
Q ss_pred HHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 763 EKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVI 842 (1255)
Q Consensus 763 ~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~ 842 (1255)
.++|++++++|++|||.+++++|++++|+++|++.++..+...+..++..++.++++++++++++|.++++++++++++.
T Consensus 903 ~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~ 982 (1466)
T PTZ00265 903 RRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFM 982 (1466)
T ss_pred HHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997779999999999999999999999999999999999999999999999999888766555443
Q ss_pred HHHHHHHHHHHHHH--HH-------------HHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHH
Q 000846 843 GSYYSRNVLMKSMA--GK-------------ARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKH 907 (1255)
Q Consensus 843 ~~~~~~~~~~~~~~--~~-------------~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1255)
..+..+.+...... +. ..+........+.|++.|++|||+|+.|+++.++|.+..+...+...+.
T Consensus 983 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~ 1062 (1466)
T PTZ00265 983 RVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRK 1062 (1466)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222211100 00 1223455678899999999999999999999999999999999988889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000846 908 SWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDR 987 (1255)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~ 987 (1255)
.+..+...++.+++..+..++++|+|++++..|.++++++++++.++.+...++..+.+.++++.++..+.+|++++++.
T Consensus 1063 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~ 1142 (1466)
T PTZ00265 1063 TLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIR 1142 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999888777766667888899999999999999999999988
Q ss_pred cCCCCCCCCCCcc--ccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC--
Q 000846 988 RSEIDPDSPQGRD--IKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP-- 1063 (1255)
Q Consensus 988 ~~~~~~~~~~~~~--~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-- 1063 (1255)
+++.+........ .+....|.|+|+||+|+||++++.+||+|+||+|+|||++||||+||||||||+++|+|||+|
T Consensus 1143 ~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~ 1222 (1466)
T PTZ00265 1143 KSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKN 1222 (1466)
T ss_pred CCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcc
Confidence 6643221111111 012245789999999999977667899999999999999999999999999999999999999
Q ss_pred ----------------------------------------------------CCceEEECCeecCCCCHHHHhcceEEEc
Q 000846 1064 ----------------------------------------------------LKGSVFMDEQDIRNYNLKQLRSHIALVS 1091 (1255)
Q Consensus 1064 ----------------------------------------------------~~G~I~idG~di~~i~~~~lR~~i~~V~ 1091 (1255)
++|+|+|||+||+++++++||++|||||
T Consensus 1223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~ 1302 (1466)
T PTZ00265 1223 DHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVS 1302 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeC
Confidence 6999999999999999999999999999
Q ss_pred cCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 000846 1092 QEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLL 1171 (1255)
Q Consensus 1092 Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILlL 1171 (1255)
|||+||+|||||||+||+|+++++++++|++.|+++|||.+||+||||.|||+|.+|||||||||||||||+|+|+||||
T Consensus 1303 Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1303 QEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred CCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeC----CEE-EEecCHHHHHhhhcCchhHHH
Q 000846 1172 DEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQKSDTIAVIKN----GRV-VEQGSHNELVALSRGGAYYSL 1244 (1255)
Q Consensus 1172 DEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~----G~i-ve~G~~~eLl~~~~~g~y~~l 1244 (1255)
|||||+||++||+.|+++|++.. +++|+|+||||++++++||+|+||++ |++ +|.|+|+||+++ ++|.|++|
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~-~~g~Y~~l 1461 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSV-QDGVYKKY 1461 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhc-CCChHHHH
Confidence 99999999999999999999984 69999999999999999999999999 995 599999999973 38999999
Q ss_pred Hhhh
Q 000846 1245 IKPQ 1248 (1255)
Q Consensus 1245 ~~~~ 1248 (1255)
|+.|
T Consensus 1462 ~~~~ 1465 (1466)
T PTZ00265 1462 VKLA 1465 (1466)
T ss_pred Hhhc
Confidence 9876
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-166 Score=1562.99 Aligned_cols=1145 Identities=23% Similarity=0.328 Sum_probs=880.7
Q ss_pred HhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHc
Q 000846 30 GMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLC---WTRTAERQTSRMRMEYLKSVLR 106 (1255)
Q Consensus 30 ~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~lr~~~~~~ll~ 106 (1255)
+...| .++..+++.+..... ..+. . ++++++.+++.+++..+ +.+...+...++|..+...+.|
T Consensus 217 ~~~~P---~lL~~li~~~~~~~~------~~~~-g---~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~ 283 (1381)
T KOG0054|consen 217 GFVGP---LLLKKLILFFSEKRL------PLNN-G---YLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYR 283 (1381)
T ss_pred ccccH---HHHHHHHHHhcCCCc------ccch-h---HHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHH
Confidence 45556 678888887654311 1111 1 11222223333333333 3445677888888877776666
Q ss_pred CCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 000846 107 QEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRL----SLAALPLTLMFIVP 182 (1255)
Q Consensus 107 ~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~l~~l~~~~l~~~~ 182 (1255)
+.+..-... .++.++|+++|.+++|++++.++. ..++.++...+-++++.++-|.. ++++++++.+++++
T Consensus 284 K~L~ls~~~-~~~~t~G~ivNlms~D~~ri~~~~-----~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~ 357 (1381)
T KOG0054|consen 284 KALRLSNSA-RGETTVGEIVNLMSVDAQRLSDAA-----CFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPL 357 (1381)
T ss_pred hhhcCchhh-ccCCCcchhhhhhhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 665543332 234789999999999999999975 44555555555555555555553 57777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 183 GLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSMGMIYVG 262 (1255)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (1255)
..+.++++.+.+.+.++..+++...++|.++|||+||.|+||+.+.++..+.++++.+.-.|.....++......+.- .
T Consensus 358 n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p-~ 436 (1381)
T KOG0054|consen 358 NSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSP-V 436 (1381)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 999999999999999999999999999999999999999999999999999999999888888887776665442211 1
Q ss_pred HHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCCCc
Q 000846 263 WAFQAWVGSYL-VTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYV 341 (1255)
Q Consensus 263 ~~~~~~~g~~l-v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~ 341 (1255)
.+....++++. ...+.+++..+|+.+.++...-.|+..+...+..+.++.+|.+|+.+++..++. ++......+..+.
T Consensus 437 lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~-~~~~~~~~~~~~~ 515 (1381)
T KOG0054|consen 437 LVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEEL-DPDSVERSPDEAG 515 (1381)
T ss_pred HHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CccccccCCCCCC
Confidence 22333444444 445677888999988888888889988777899999999999999999986533 2211111122333
Q ss_pred cceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhc
Q 000846 342 RGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRS 421 (1255)
Q Consensus 342 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 421 (1255)
+..|+++|.+|+|.+....+.|+||||+|++|+.+||||+.|||||||+.+|+|+++..+|++.++|
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g------------- 582 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG------------- 582 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-------------
Confidence 4579999999999764445699999999999999999999999999999999999999999999998
Q ss_pred ccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccC
Q 000846 422 QMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501 (1255)
Q Consensus 422 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~ 501 (1255)
.++||||+||+|+|||||||+||.| ...++..++.+.|+++++++.||.|+.|.|||+|.+|||||||||+||||+|+|
T Consensus 583 siaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~ 661 (1381)
T KOG0054|consen 583 SVAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQD 661 (1381)
T ss_pred eEEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhcc
Confidence 5999999999999999999999986 344455555666788899999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHH-HHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhccCCCChhHHH
Q 000846 502 PKILLLDEATSALDAQS-ERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQM 580 (1255)
Q Consensus 502 ~~illlDEpts~lD~~~-~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 580 (1255)
+||++||||+||+|+|+ .+.+.++|+...++||+|+|||.++.+++||+|++|++|+|++.|+++|+++. +..+.++
T Consensus 662 adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~--~~~~~~l 739 (1381)
T KOG0054|consen 662 ADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKS--GGDFAEL 739 (1381)
T ss_pred CCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhc--chhHHHH
Confidence 99999999999999996 55667788888889999999999999999999999999999999999999973 5566666
Q ss_pred HHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCcccccCCCCCCCcccc
Q 000846 581 VELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDPDDDSLGDR 660 (1255)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1255)
....+...+.....+..+... ........... ..+..............+....++
T Consensus 740 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ee 795 (1381)
T KOG0054|consen 740 AHEEESEQEEEASEKDLESGE-----------------SSRESESRSLE-------SLSSEEEKSKDEKEEEDKLVQEEE 795 (1381)
T ss_pred hhccchhhccccccccccccc-----------------cccchhhhhhh-------hhcccccccccccchhhHHHHHHH
Confidence 322221111110000000000 00000000000 000000000000000000000111
Q ss_pred ccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHH
Q 000846 661 IDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNF 740 (1255)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1255)
.+.+......++++++. ...+....+.+++.+....+.....+|+++|.+.-...... ......+..+|.+++++..
T Consensus 796 ~~~G~v~~~vY~~Y~~a-~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~--~~~~~~~~~vY~~l~~~~~ 872 (1381)
T KOG0054|consen 796 RETGKVSWSVYKKYIKA-AGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT--TVSTSFYLGVYALLGVASS 872 (1381)
T ss_pred HhcCEeeHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc--CCCcchHHHHHHHHHHHHH
Confidence 12222333444555444 12222222233333444444445555666554321110000 0234567788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 741 ISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSY 820 (1255)
Q Consensus 741 i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~ 820 (1255)
++.+++.+.+...+.++++++|++++++++++||+||| .+|+|+|+|||++|++.+|..++..+..++++++.+++.+
T Consensus 873 ~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd--tTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~ 950 (1381)
T KOG0054|consen 873 LLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD--TTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGIL 950 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC--CCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 8999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcchHHHHHhccHHHHHHHHHHH
Q 000846 821 IVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQ----KEGSQLASEAVINHRTITAFSSQKRILGLFKET 896 (1255)
Q Consensus 821 ~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~ 896 (1255)
+++.+..|. ++++++|+.+++++++.+|.+. +++.++.. ....+|++|++.|+.|||||+.+++|.+++.+.
T Consensus 951 ~vi~~~~P~---fli~~~pl~v~~~~~~~~Y~~t-sReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~ 1026 (1381)
T KOG0054|consen 951 VVISYVTPW---FLIAIIPLGVIYYFVQRYYLAT-SRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDEL 1026 (1381)
T ss_pred HHhhHHhHH---HHHHHHHHHHHHHHHHHHHHHH-hHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHH
Confidence 888877764 4566778887777777777665 45555543 456789999999999999999999999999999
Q ss_pred HhchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 897 LRGPKEESLKHSWYSGIGLFS-SQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGS 975 (1255)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1255)
.|.+.+..+... .+..|.++ .+++..+....+..+.. +...+.+++|.+..++.+.+.....++...+...++++.+
T Consensus 1027 ~D~~~~~~f~~~-~a~RWla~Rle~ig~~~v~~~al~~v-l~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m 1104 (1381)
T KOG0054|consen 1027 IDENSRAFFLSI-SANRWLAVRLELLGNLVVLIAALFAV-LLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNM 1104 (1381)
T ss_pred hhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999887765432 22233333 23332222222222222 2222226788888888999999999999999999999999
Q ss_pred HHHHHHHHHHcccCCCCCCCCCC-ccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHH
Q 000846 976 NAVRSVFAILDRRSEIDPDSPQG-RDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTII 1054 (1255)
Q Consensus 976 ~a~~ri~~~~~~~~~~~~~~~~~-~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~ 1054 (1255)
++++|+.+|.+.++|.+...+.. ++..||.+|+|+|+|++.+|.+. .++|||||||+|+||||||||||||||||||+
T Consensus 1105 ~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~ 1183 (1381)
T KOG0054|consen 1105 VSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLI 1183 (1381)
T ss_pred hhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHH
Confidence 99999999999877732222222 56789999999999999999533 35799999999999999999999999999999
Q ss_pred HHHhcccCCCCceEEECCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccc
Q 000846 1055 GLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMK 1134 (1255)
Q Consensus 1055 ~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp 1134 (1255)
++|+|+.+|.+|+|.|||+||+++++++||+++++|||||+||+||+|+||+..+ +++|++||+|++.|+++++|.++|
T Consensus 1184 ~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~-e~sD~~IW~ALe~~~Lk~~v~~~p 1262 (1381)
T KOG0054|consen 1184 LALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD-EYSDDEIWEALERCQLKDVVSSLP 1262 (1381)
T ss_pred HHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccc-ccCHHHHHHHHHHhChHHHHhhCC
Confidence 9999999999999999999999999999999999999999999999999995332 789999999999999999999999
Q ss_pred cccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCE
Q 000846 1135 DGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDT 1214 (1255)
Q Consensus 1135 ~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~ 1214 (1255)
+|||++|.|+|.|||.||||++||||||||++|||+|||||+++|++||..||++||+.|++||||+||||++||.||||
T Consensus 1263 ~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~Dr 1342 (1381)
T KOG0054|consen 1263 GGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDR 1342 (1381)
T ss_pred cCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCEEEEecCHHHHHhhhcCchhHHHHhhhc
Q 000846 1215 IAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQG 1249 (1255)
Q Consensus 1215 I~Vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~ 1249 (1255)
|+|||+|+|+|+|+|++|+++ +++.|++++.+..
T Consensus 1343 VlVld~G~v~EfdsP~~Ll~~-~~S~f~~~l~~~~ 1376 (1381)
T KOG0054|consen 1343 VLVLDAGRVVEFDSPAELLSD-KDSLFSSLLKEAA 1376 (1381)
T ss_pred EEEeeCCeEeecCChHHHHhC-CcchHHHHHHHHH
Confidence 999999999999999999986 7899987776543
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-157 Score=1576.81 Aligned_cols=1099 Identities=20% Similarity=0.253 Sum_probs=831.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 86 TRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILS 165 (1255)
Q Consensus 86 ~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1255)
.+.+.++...++..+|+++++++..+++. .++|+++|++++|++.+++++. .+..++...+.+++++++++..-
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~-----~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~l 439 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKK-----FTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQL 439 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCC-----CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888889999999999999885 7889999999999999999874 34445544444444444433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 000846 166 WRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQ 245 (1255)
Q Consensus 166 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~ 245 (1255)
...++++++++.+++++..++.+++++..++.++..+++.+.+.|.++||++||+|++|+.+.+++.+.++++.+...+.
T Consensus 440 g~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~ 519 (1622)
T PLN03130 440 GVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKA 519 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333334445555677788888888889999999999999999999999999999999999999888877766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000846 246 GFIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRT 325 (1255)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~ 325 (1255)
....++...+.... ...+.++++|++++..|.+++|.+++++.++.....|+..+...+..+.+++++++||.++++.+
T Consensus 520 ~~~~~~~~~~~~~~-~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~ 598 (1622)
T PLN03130 520 QLLSAFNSFILNSI-PVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAE 598 (1622)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 55554433322111 12345567888988899999999999988888888899888888999999999999999999765
Q ss_pred CCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCc-cEE
Q 000846 326 PAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVE-GEV 404 (1255)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~-G~i 404 (1255)
+..+... ....+..+.|+++|++|+|+.++++++|+|+||+|++||+++||||||||||||+++|+|+++|++ |+|
T Consensus 599 e~~~~~~---~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I 675 (1622)
T PLN03130 599 ERVLLPN---PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASV 675 (1622)
T ss_pred ccccccC---CcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceE
Confidence 4321111 111112347999999999985444679999999999999999999999999999999999999999 999
Q ss_pred EECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCC
Q 000846 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQM 484 (1255)
Q Consensus 405 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 484 (1255)
.+ |++|+||+|+||||++||||||+||.+ .+++++.++++.|+++++++.||+|++|.+||+|.+|
T Consensus 676 ~l-------------~~~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~L 741 (1622)
T PLN03130 676 VI-------------RGTVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNI 741 (1622)
T ss_pred EE-------------cCeEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCC
Confidence 85 458999999999999999999999986 5788899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 000846 485 SGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIV-QEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESG 563 (1255)
Q Consensus 485 SgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i-~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g 563 (1255)
||||||||+||||+|++|+||||||||||||+++++.+ .++++...+++|+|+|||+++.++.||+|++|++|+++++|
T Consensus 742 SGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~G 821 (1622)
T PLN03130 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEG 821 (1622)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeC
Confidence 99999999999999999999999999999999998766 56777777899999999999999999999999999999999
Q ss_pred ChhHHhccCCCChhHHHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCCCCCCcCCCC
Q 000846 564 SHNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTP 643 (1255)
Q Consensus 564 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1255)
+|+|++++ .+.|.++++.+....+....+......+. . ....... ...... . ..+.
T Consensus 822 t~~eL~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~-~~~~~~---~---~~~~--- 877 (1622)
T PLN03130 822 TYEELSNN--GPLFQKLMENAGKMEEYVEENGEEEDDQT--------S----SKPVANG-NANNLK---K---DSSS--- 877 (1622)
T ss_pred CHHHHHhc--chhHHHHHHhccccccccccccccccccc--------c----ccccccc-cccccc---c---cccc---
Confidence 99999874 57787777644321111000000000000 0 0000000 000000 0 0000
Q ss_pred CcccccCCCCCCCccccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Q 000846 644 YSYTIQYDPDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKS 723 (1255)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 723 (1255)
..............++.+........++++++.... ++...+.+++.++..++....+++++.|.+..... ..
T Consensus 878 -~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~-----~~ 950 (1622)
T PLN03130 878 -KKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGG-AWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPK-----TH 950 (1622)
T ss_pred -cccccccchhhhhHHHHhcCccCHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-----CC
Confidence 000000000000001011111122333334333222 22222223333333344444555666555422110 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHH
Q 000846 724 KSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVG 803 (1255)
Q Consensus 724 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~ 803 (1255)
....+.+++++++++..++.+++.+++.+.+.+++.++|++++++++++|++||| .+|+|++++|+++|++.++..++
T Consensus 951 ~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd--~~~~G~IlnR~s~Di~~id~~l~ 1028 (1622)
T PLN03130 951 GPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFH--TNPLGRIINRFAKDLGDIDRNVA 1028 (1622)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhc--cCCchHHHHHHHHHHHHHHHHHH
Confidence 2234566677888888889999999999999999999999999999999999999 78999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcchHHH
Q 000846 804 DRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMK---SMAGKARKAQKEGSQLASEAVINHRTI 880 (1255)
Q Consensus 804 ~~l~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~e~l~g~~tI 880 (1255)
..+..++..++.+++.++++++++|... ++++|+.+.+++....+.+ ...+..........+++.|++.|++||
T Consensus 1029 ~~~~~~~~~~~~~i~~~i~i~~~~~~~~---~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tI 1105 (1622)
T PLN03130 1029 VFVNMFLGQIFQLLSTFVLIGIVSTISL---WAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTI 1105 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHH
Confidence 9999999999998888888888876332 2334443333333322222 222222333455678899999999999
Q ss_pred HHhccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC-----HHHHHHHHHHH
Q 000846 881 TAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQEL-IT-----PEHLFQAFLIL 954 (1255)
Q Consensus 881 ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-~~-----~~~~~~~~~~~ 954 (1255)
|+|+.++++.+.+.+..+...+..........+.....+++ ...++++.+...+..+. .. .+.+..++.+.
T Consensus 1106 raf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~---~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~ 1182 (1622)
T PLN03130 1106 RAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETL---GGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYA 1182 (1622)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHH
Confidence 99999998888887777665544332221111111111111 11222222333333322 11 23333344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCC-CCCccccccccccEEEEEEEEECCCCCCCccccceeEE
Q 000846 955 LFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDS-PQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLK 1033 (1255)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~-~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~ 1033 (1255)
......+..+...+..+++.+.+++|+.++++.++|.+... ...++..||.+|.|+|+||+|+|+++ .++||+||||+
T Consensus 1183 ~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~ 1261 (1622)
T PLN03130 1183 LNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFE 1261 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEE
Confidence 55666777777888899999999999999998776643211 11223346678999999999999643 34799999999
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCC
Q 000846 1034 IEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADAR 1113 (1255)
Q Consensus 1034 I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~ 1113 (1255)
|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||++++++++|++|++|||||+||+|||||||++++ +++
T Consensus 1262 I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~t 1340 (1622)
T PLN03130 1262 ISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHN 1340 (1622)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999886 579
Q ss_pred HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh
Q 000846 1114 ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKM 1193 (1255)
Q Consensus 1114 ~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~ 1193 (1255)
|+|+++|++.+++++||.++|+||||+|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.||++|++.
T Consensus 1341 deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~ 1420 (1622)
T PLN03130 1341 DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREE 1420 (1622)
T ss_pred HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhhhcCchhHHHHhhhcC
Q 000846 1194 MMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGG 1250 (1255)
Q Consensus 1194 ~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~~ 1250 (1255)
+++||+|+||||++|+++||||+||++|+|+|+|+|+||+++ ++|.|++|++.++.
T Consensus 1421 ~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~-~~g~f~~L~~~~~~ 1476 (1622)
T PLN03130 1421 FKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSN-EGSAFSKMVQSTGA 1476 (1622)
T ss_pred CCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhC-CCCHHHHHHHHcCh
Confidence 999999999999999999999999999999999999999985 57999999988754
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-156 Score=1566.13 Aligned_cols=1094 Identities=20% Similarity=0.264 Sum_probs=825.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 86 TRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILS 165 (1255)
Q Consensus 86 ~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1255)
.+.+.++...++..+|+++++++..++++ .++|+++|++++|++.+++.+ ..+..++...+.++++++++ .
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~-----~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l---~ 436 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKN-----FASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLL---Y 436 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCC-----CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---H
Confidence 56778888888889999999999998885 788999999999999999986 33333433333333333222 2
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 000846 166 WRLSLAALPL---TLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELG 242 (1255)
Q Consensus 166 ~~l~l~~l~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~ 242 (1255)
+.+++.+++. +.+++++..++.++..+..++.++..+++.+.+.|.++||++||+|++|+.+.+++.+.++++.+..
T Consensus 437 ~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~ 516 (1495)
T PLN03232 437 QQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWF 516 (1495)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 2343333322 2333344667788888889999999999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000846 243 IKQGFIKGLLMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMV 322 (1255)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 322 (1255)
.+.....++...+... ....+.++++|++++.+|.+++|.+++++.++.....|+..+...+..+.++++|++||.+++
T Consensus 517 ~~~~~~~~~~~~~~~~-~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L 595 (1495)
T PLN03232 517 RKAQLLSAFNSFILNS-IPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELL 595 (1495)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776655544332211 112233467889999899999999999998888888999888888899999999999999999
Q ss_pred cCCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCcc
Q 000846 323 DRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402 (1255)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G 402 (1255)
+.+++.+... ....+..+.|+++|++|+|+.++++++|+|+||+|++||+++||||||||||||+++|+|+++|++|
T Consensus 596 ~~~~~~~~~~---~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G 672 (1495)
T PLN03232 596 LSEERILAQN---PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAET 672 (1495)
T ss_pred cCcccccccc---CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCC
Confidence 8654322111 1111223479999999999854446799999999999999999999999999999999999999998
Q ss_pred EEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCC
Q 000846 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGF 482 (1255)
Q Consensus 403 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 482 (1255)
.+. .+|++|+||+|+||||++||||||+||.+ .+++++.++++.|+++++++.+|+|++|.+||+|.
T Consensus 673 ~i~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~ 739 (1495)
T PLN03232 673 SSV------------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGV 739 (1495)
T ss_pred CEE------------EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCc
Confidence 763 34779999999999999999999999985 67889999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEE
Q 000846 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQ-EAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVE 561 (1255)
Q Consensus 483 ~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~-~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 561 (1255)
+|||||||||+||||+|++|+||||||||||||+++++.+. ++++...+++|+|+||||++.++.||+|++|++|++++
T Consensus 740 ~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~ 819 (1495)
T PLN03232 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKE 819 (1495)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999988775 45666678999999999999999999999999999999
Q ss_pred ecChhHHhccCCCChhHHHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCCCCCCcCC
Q 000846 562 SGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVG 641 (1255)
Q Consensus 562 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (1255)
+|+|+|++++ .+.|.++++.+....+..+... + .+.. . . .... . ........ ..
T Consensus 820 ~Gt~~eL~~~--~~~~~~l~~~~~~~~~~~~~~~--~-~~~~----~--~--~~~~-~--~~~~~~~~--------~~-- 873 (1495)
T PLN03232 820 EGTFAELSKS--GSLFKKLMENAGKMDATQEVNT--N-DENI----L--K--LGPT-V--TIDVSERN--------LG-- 873 (1495)
T ss_pred ecCHHHHHhc--chhHHHHHHhcccccccccccc--c-cccc----c--c--cccc-c--cccccccc--------cc--
Confidence 9999999874 5778887765432111100000 0 0000 0 0 0000 0 00000000 00
Q ss_pred CCCcccccCCCCCCCccccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhh
Q 000846 642 TPYSYTIQYDPDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEI 721 (1255)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 721 (1255)
.. . ...........+++.+........++++++...+.| ...+.+++.++..++.....+|++.|.+. ... .
T Consensus 874 ~~-~-~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~wl~~w~~~----~~~-~ 945 (1495)
T PLN03232 874 ST-K-QGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLW-VVMILLVCYLTTEVLRVSSSTWLSIWTDQ----STP-K 945 (1495)
T ss_pred cc-c-ccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cCC-C
Confidence 00 0 000000000000111111222233334443322212 22222222222222222333444433221 100 0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHH
Q 000846 722 KSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSL 801 (1255)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~ 801 (1255)
......|..+|++++++..++.+++.+++.+.+.+++.++|++++++++++|++||| ++++|++++|+++|++.++..
T Consensus 946 ~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~--~~~~G~ilnr~s~Di~~id~~ 1023 (1495)
T PLN03232 946 SYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFH--TNPTGRVINRFSKDIGDIDRN 1023 (1495)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeC--cCCchHHHHHhHhhHHHHHHH
Confidence 112345667788888888999999999999999999999999999999999999999 789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcchH
Q 000846 802 VGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLM---KSMAGKARKAQKEGSQLASEAVINHR 878 (1255)
Q Consensus 802 ~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~l~g~~ 878 (1255)
++..+..++..++.+++.+++++++++... ++++|+.+.+++.+..+. +...+......+...+++.|++.|++
T Consensus 1024 l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~ 1100 (1495)
T PLN03232 1024 VANLMNMFMNQLWQLLSTFALIGTVSTISL---WAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLS 1100 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChH
Confidence 999999999988888888877777765332 223344333333222222 22223333444566788999999999
Q ss_pred HHHHhccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC----C-HHHHHHHHH
Q 000846 879 TITAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLT-QELI----T-PEHLFQAFL 952 (1255)
Q Consensus 879 tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~~~~----~-~~~~~~~~~ 952 (1255)
|||+|+.++++.+++.+..+...+........ ..+..+. +..+...++++.+...+. .+.+ . .+.+..++.
T Consensus 1101 tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~wl~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~ 1177 (1495)
T PLN03232 1101 SIRAYKAYDRMAKINGKSMDNNIRFTLANTSS-NRWLTIR--LETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLS 1177 (1495)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHH
Confidence 99999999998888887776655544332211 1111111 111222222233333333 2322 1 122222344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCC-CCCCccccccccccEEEEEEEEECCCCCCCcccccee
Q 000846 953 ILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPD-SPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLS 1031 (1255)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~-~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs 1031 (1255)
+......++..+...+.+++.++.+++|+.++++.++|.+.. +...++..||.+|.|+|+||+|+|+++ .++||+|+|
T Consensus 1178 ~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~is 1256 (1495)
T PLN03232 1178 YTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLS 1256 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccce
Confidence 444555667788888999999999999999999877664321 111122346677899999999999532 357999999
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCC
Q 000846 1032 LKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKAD 1111 (1255)
Q Consensus 1032 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~ 1111 (1255)
|+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||++++++++|++|++|||||+||+|||||||++++ +
T Consensus 1257 l~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~ 1335 (1495)
T PLN03232 1257 FFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-E 1335 (1495)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999876 6
Q ss_pred CCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 000846 1112 ARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALE 1191 (1255)
Q Consensus 1112 ~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~ 1191 (1255)
++|+|+++|++.+++++||.++|+||||+|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.||++|+
T Consensus 1336 ~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~ 1415 (1495)
T PLN03232 1336 HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415 (1495)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhhhcCchhHHHHhhhcC
Q 000846 1192 KMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGG 1250 (1255)
Q Consensus 1192 ~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~~ 1250 (1255)
+.+++||+|+||||++++++||||+||++|+|+|+|+|+||+++ ++|.|++|++.++.
T Consensus 1416 ~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~-~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1416 EEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSR-DTSAFFRMVHSTGP 1473 (1495)
T ss_pred HHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCCHHHHHHHHhCh
Confidence 99999999999999999999999999999999999999999986 45799999988764
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-151 Score=1524.44 Aligned_cols=1174 Identities=19% Similarity=0.237 Sum_probs=865.7
Q ss_pred HHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc
Q 000846 34 PLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFD 113 (1255)
Q Consensus 34 p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~ 113 (1255)
...|++++.+++.+...... . .....++..++++.++.+++.....+...+.+.++...++..+|+|+++++..+++
T Consensus 334 ~~~P~ll~~li~~~~~~~~~-~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~ 410 (1522)
T TIGR00957 334 FIGPQILSLLIRFVNDPMAP-D--WQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARK 410 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCcc-c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcC
Confidence 33447888899865432111 0 11111222222223333334333334456778999999999999999999999888
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 114 TQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLFGKLMMGV 193 (1255)
Q Consensus 114 ~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~ 193 (1255)
. .++|+++|++++|++++.+... .+..+....+.+++++++++..-.+.+++.++++++++++..++.+.+++.
T Consensus 411 ~-----~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~ 484 (1522)
T TIGR00957 411 S-----STVGEIVNLMSVDAQRFMDLAT-YINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTY 484 (1522)
T ss_pred C-----CCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 7889999999999999998553 333444444444444433332222234555666677777788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 194 IMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSMGMIYVGWAFQAWVGSYL 273 (1255)
Q Consensus 194 ~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 273 (1255)
.++.++..+++.+.+.|.++||++||+|++|+.+.+++.+.++++.+...+......+...... .....+..+.++.+.
T Consensus 485 ~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~ 563 (1522)
T TIGR00957 485 QVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWV-CTPFLVALITFAVYV 563 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988887766655555443222211 111122233345566
Q ss_pred Hhh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCCC-ccceEEEEeE
Q 000846 274 VTE--KGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSY-VRGEIEFRDV 350 (1255)
Q Consensus 274 v~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~-~~~~i~~~~v 350 (1255)
+.. +.++++.+++++.++.....|+..+...+..+.++++|.+||.++++.+++... ........+ ..+.|+++|+
T Consensus 564 ~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~-~~~~~~~~~~~~~~i~~~~~ 642 (1522)
T TIGR00957 564 TVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPD-SIERRTIKPGEGNSITVHNA 642 (1522)
T ss_pred HhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-cccccccCCCCCCcEEEEEe
Confidence 653 467889999888777777889988888999999999999999999986543211 100011111 1237999999
Q ss_pred EEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccEEeccCC
Q 000846 351 YFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEP 430 (1255)
Q Consensus 351 ~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 430 (1255)
+|+|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+|| +|+||+|+|
T Consensus 643 ~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~ 708 (1522)
T TIGR00957 643 TFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQA 708 (1522)
T ss_pred EEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEEcCCc
Confidence 9999743 35699999999999999999999999999999999999999999999987 699999999
Q ss_pred ccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 000846 431 VLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEA 510 (1255)
Q Consensus 431 ~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~illlDEp 510 (1255)
|+|++||+|||.+|.+ ...++..++++.+++.+++..+|+|++|.+|++|.+|||||||||+||||++++|+|+|||||
T Consensus 709 ~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp 787 (1522)
T TIGR00957 709 WIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDP 787 (1522)
T ss_pred cccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999999999875 345566777788888899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHH---hcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhccCCCChhHHHHHHHhhc
Q 000846 511 TSALDAQSERIVQEAIDK---VSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMA 587 (1255)
Q Consensus 511 ts~lD~~~~~~i~~~l~~---~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 587 (1255)
||+||+++++.+.+.+.+ +.+++|+|+|||+++.+..||+|++|++|+++++|+++++.++ .+.|.++...+...
T Consensus 788 ~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~--~~~~~~l~~~~~~~ 865 (1522)
T TIGR00957 788 LSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR--DGAFAEFLRTYAPD 865 (1522)
T ss_pred ccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc--chhHHHHHHhhccc
Confidence 999999999999998853 4568999999999999999999999999999999999999873 56777776544321
Q ss_pred ccCCCCCCCcCC---ccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCcccccCCC-CCCCc--cccc
Q 000846 588 SENDTSNDTFND---FSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDP-DDDSL--GDRI 661 (1255)
Q Consensus 588 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~ 661 (1255)
.+....+..... .+................................................... ..... ++..
T Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 945 (1522)
T TIGR00957 866 EQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKA 945 (1522)
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHH
Confidence 111000000000 00000000000000000000000000000000000000000000000000000 00000 0000
Q ss_pred cccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHH
Q 000846 662 DQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFI 741 (1255)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 741 (1255)
.........++.+++.. .+...++.+++.++...+..+.+++++.|.+..... ........+..+|++++++..+
T Consensus 946 ~~g~v~~~~y~~Y~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~---~~~~~~~~~~~iy~~l~i~~~~ 1020 (1522)
T TIGR00957 946 QTGQVELSVYWDYMKAI--GLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVN---GTQNNTSLRLSVYGALGILQGF 1020 (1522)
T ss_pred hcCcccHHHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---CCCCCcchHHHHHHHHHHHHHH
Confidence 11111223344444332 222222223333333444455566666665421100 0011122344567777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 742 SSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYI 821 (1255)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~ 821 (1255)
+.++..+++.+.+.++..++|++++++++++|++||| .+++|+++||+++|++.++..++..+..++..++.+++.++
T Consensus 1021 ~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li 1098 (1522)
T TIGR00957 1021 AVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFE--RTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALI 1098 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999999999 78999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchH
Q 000846 822 VGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPK 901 (1255)
Q Consensus 822 ~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~ 901 (1255)
++++.+|.+++++++++++.+.......+..+...+...+..+...+++.|++.|++|||+|+.++++.+++.+..+...
T Consensus 1099 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~ 1178 (1522)
T TIGR00957 1099 VILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQ 1178 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 88888886655444333332222212212222223333444566789999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 902 EESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLT-QELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRS 980 (1255)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r 980 (1255)
+..........+.....+++.. .++++.+...+. .+.++.|.+..++.+......++..+...+.+++.++.+++|
T Consensus 1179 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eR 1255 (1522)
T TIGR00957 1179 KAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVER 1255 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765544433333333333322 233344444443 578999999999999999999999999999999999999999
Q ss_pred HHHHHcccCCCCCC-CCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc
Q 000846 981 VFAILDRRSEIDPD-SPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 981 i~~~~~~~~~~~~~-~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
+.++++.++|.+.. +...++..||.+|.|+|+||+|+|+++ .++||+||||+|+|||+||||||||||||||+++|+|
T Consensus 1256 i~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~r 1334 (1522)
T TIGR00957 1256 LKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR 1334 (1522)
T ss_pred HHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 99999877654321 111223346778999999999999754 2479999999999999999999999999999999999
Q ss_pred ccCCCCceEEECCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHcccccccc
Q 000846 1060 FYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDT 1139 (1255)
Q Consensus 1060 l~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt 1139 (1255)
+|+|++|+|+|||+||++++++++|++|++|||||+||+|||||||++.. +++|+|+++|++.++++++|.++|+||||
T Consensus 1335 l~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt 1413 (1522)
T TIGR00957 1335 INESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDH 1413 (1522)
T ss_pred CccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCc
Confidence 99999999999999999999999999999999999999999999997433 68999999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEe
Q 000846 1140 YCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIK 1219 (1255)
Q Consensus 1140 ~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~ 1219 (1255)
+|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.||++|++.+++||+|+||||++++.+||||+|||
T Consensus 1414 ~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld 1493 (1522)
T TIGR00957 1414 ECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLD 1493 (1522)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCHHHHHhhhcCchhHHHHhhhc
Q 000846 1220 NGRVVEQGSHNELVALSRGGAYYSLIKPQG 1249 (1255)
Q Consensus 1220 ~G~ive~G~~~eLl~~~~~g~y~~l~~~~~ 1249 (1255)
+|+|+|+|+|+||+++ +|.|++|+++.+
T Consensus 1494 ~G~IvE~G~~~eLl~~--~~~f~~l~~~~g 1521 (1522)
T TIGR00957 1494 KGEVAEFGAPSNLLQQ--RGIFYSMAKDAG 1521 (1522)
T ss_pred CCEEEEECCHHHHHhC--CCHHHHHHHHcC
Confidence 9999999999999986 799999998753
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-145 Score=1459.70 Aligned_cols=1171 Identities=18% Similarity=0.212 Sum_probs=863.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 20 LFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRME 99 (1255)
Q Consensus 20 ~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 99 (1255)
++.+++.++..++....|++++.+++.+.... ... .....+++.+++..++..++.....+...+.+.++-..+...
T Consensus 247 ~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~-~~~--~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~ 323 (1560)
T PTZ00243 247 WWQIPFKLLSDVCTLTLPVLLKYFVKFLDADN-ATW--GRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNAL 323 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445577888887653221 100 011111222223333444444445556667788888888889
Q ss_pred HHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 100 YLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMF 179 (1255)
Q Consensus 100 ~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~ 179 (1255)
+|+|+++++...+... +.++|+++|.+++|++.+.+++.. +..++...+.+++++++++.+..+.+++.+++++++
T Consensus 324 if~K~l~ls~~~~~~~---~~~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~ 399 (1560)
T PTZ00243 324 IFEKCFTISSKSLAQP---DMNTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVT 399 (1560)
T ss_pred HHHHHHhCChhhhCCC---CCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999887766421 257899999999999999999844 445555666666666666666666788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 180 IVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSMGMI 259 (1255)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (1255)
+++..++.++..+..++.++..+++.+.+.|.++|||+||.++||+.+.+++.+.++++.+...+.....++...+....
T Consensus 400 ~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~ 479 (1560)
T PTZ00243 400 LPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNAT 479 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999888887666666655443332111
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-----CCCC--
Q 000846 260 YVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAI-----DTDD-- 332 (1255)
Q Consensus 260 ~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~-----~~~~-- 332 (1255)
...+..+.++++.+..+.++++.+|+++.++..+..|+..+...+..+.++.+|++||.++++.++.. +...
T Consensus 480 -p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~ 558 (1560)
T PTZ00243 480 -PTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYW 558 (1560)
T ss_pred -HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhc
Confidence 11223334567788888999999999999999999999988889999999999999999999764310 0000
Q ss_pred ------cc--c------------------------------------------ccCCCccceEEEEeEEEEcCCC-----
Q 000846 333 ------KM--G------------------------------------------KALSYVRGEIEFRDVYFCYPSR----- 357 (1255)
Q Consensus 333 ------~~--~------------------------------------------~~~~~~~~~i~~~~v~~~y~~~----- 357 (1255)
.. . +......+.+.++|++|.++..
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1560)
T PTZ00243 559 REQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHI 638 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccc
Confidence 00 0 0000012357788887765410
Q ss_pred --------------------------------CCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEE
Q 000846 358 --------------------------------PDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVL 405 (1255)
Q Consensus 358 --------------------------------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~ 405 (1255)
.++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~ 718 (1560)
T PTZ00243 639 VEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW 718 (1560)
T ss_pred ccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence 124589999999999999999999999999999999999999999998
Q ss_pred ECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCC
Q 000846 406 LDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMS 485 (1255)
Q Consensus 406 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 485 (1255)
++ ++||||+|+||+|++||+|||.++.+ ...+++.++.+.++++++++.+|+|++|.+|++|.+||
T Consensus 719 ~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LS 784 (1560)
T PTZ00243 719 AE-------------RSIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLS 784 (1560)
T ss_pred EC-------------CeEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCC
Confidence 64 47999999999999999999999864 23455677778888999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 000846 486 GGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE-AIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGS 564 (1255)
Q Consensus 486 gGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~ 564 (1255)
|||||||+||||++.+|+|||||||||+||+++.+.+.+ ++....+|+|+|+|||+++.+..||+|++|++|+++++|+
T Consensus 785 GGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~ 864 (1560)
T PTZ00243 785 GGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGS 864 (1560)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999999999998777655 4544556899999999999999999999999999999999
Q ss_pred hhHHhccCCCChhHHHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCCCCCCcCCCCC
Q 000846 565 HNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPY 644 (1255)
Q Consensus 565 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (1255)
++++++. +.|..+........+...... ..+.... . . .......... ...... .... ..
T Consensus 865 ~~~l~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~--~--~~~~~~~~~~-~~~~~~----~~~~----~~ 923 (1560)
T PTZ00243 865 SADFMRT---SLYATLAAELKENKDSKEGDA-DAEVAEV----D--A--APGGAVDHEP-PVAKQE----GNAE----GG 923 (1560)
T ss_pred HHHHHhC---hHHHHHHHhhccccccccccc-ccccccc----c--c--cccccccccc-cccccc----cccc----cc
Confidence 9999863 456666543221111000000 0000000 0 0 0000000000 000000 0000 00
Q ss_pred cccccCCCCCCC--ccccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhh
Q 000846 645 SYTIQYDPDDDS--LGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIK 722 (1255)
Q Consensus 645 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 722 (1255)
. ....+..... ..++..........++++++.... +...+..+++.++...+.....++++.|..... .
T Consensus 924 ~-~~~~~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~-~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~-------~ 994 (1560)
T PTZ00243 924 D-GAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGG-LHAAGFVLATFAVTELVTVSSGVWLSMWSTRSF-------K 994 (1560)
T ss_pred c-ccccccccchhhhHHHHhcCcccHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------C
Confidence 0 0000000000 000001111222333333333211 111111112222222333333444444332110 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHH
Q 000846 723 SKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLV 802 (1255)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~ 802 (1255)
.....+..+|+++.++..+..+++.+.....+.+...++|++++++++++|++||| .+++|+++||+++|++.+++.+
T Consensus 995 ~~~~~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd--~~~~G~ilnR~s~Di~~id~~l 1072 (1560)
T PTZ00243 995 LSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFD--TTPLGRILNRFSRDIDILDNTL 1072 (1560)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcc--CCCccHHHHHHHhhHHHHHHHH
Confidence 11223445555566666666667777777777888899999999999999999999 7899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcchHH
Q 000846 803 GDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMK---SMAGKARKAQKEGSQLASEAVINHRT 879 (1255)
Q Consensus 803 ~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~e~l~g~~t 879 (1255)
+..+..++..++.+++.++++++.+|.+. ++++|+.++++++...+.+ ...+..........+++.|++.|++|
T Consensus 1073 ~~~l~~~~~~~~~~i~~li~~~~~~p~~~---~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~t 1149 (1560)
T PTZ00243 1073 PMSYLYLLQCLFSICSSILVTSASQPFVL---VALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSAT 1149 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHH
Confidence 99999999999999999988888887433 3333443333333333322 22222333455678999999999999
Q ss_pred HHHhccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCCCHHHHHHHHHHHHHH
Q 000846 880 ITAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRL--LTQELITPEHLFQAFLILLFT 957 (1255)
Q Consensus 880 Ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l--~~~~~~~~~~~~~~~~~~~~~ 957 (1255)
||+|+.++++.++|.+..+...+..........+.....+++..+...++.+++... ...+.++++.+..++.+....
T Consensus 1150 Iraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l 1229 (1560)
T PTZ00243 1150 ITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQT 1229 (1560)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988887776555444444445555544444444444333 234457788777777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCC-------------------------CCCcc---ccccccccE
Q 000846 958 AYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDS-------------------------PQGRD---IKRQMRGRI 1009 (1255)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~-------------------------~~~~~---~~~~~~g~I 1009 (1255)
..++..+...+.+++.++.+++|+.++++..++++... +..++ +.++..|.|
T Consensus 1230 ~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I 1309 (1560)
T PTZ00243 1230 TATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSL 1309 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeE
Confidence 88899999999999999999999999997543321000 00001 123346889
Q ss_pred EEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceEE
Q 000846 1010 ELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIAL 1089 (1255)
Q Consensus 1010 ~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~ 1089 (1255)
+|+||+|+|++. .++||+||||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++
T Consensus 1310 ~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~i 1388 (1560)
T PTZ00243 1310 VFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSM 1388 (1560)
T ss_pred EEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceE
Confidence 999999999743 3469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccC-CCE
Q 000846 1090 VSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKN-PSI 1168 (1255)
Q Consensus 1090 V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~-p~I 1168 (1255)
|||||+||+|||||||++++ +++|+|+++|++.++++++|.++|+||||.|||+|.+|||||||||||||||+++ |+|
T Consensus 1389 VpQdp~LF~gTIreNIdp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~I 1467 (1560)
T PTZ00243 1389 IPQDPVLFDGTVRQNVDPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGF 1467 (1560)
T ss_pred ECCCCccccccHHHHhCccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCE
Confidence 99999999999999997653 7899999999999999999999999999999999999999999999999999996 899
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhhhcCchhHHHHhhh
Q 000846 1169 LLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248 (1255)
Q Consensus 1169 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~ 1248 (1255)
||||||||+||++||+.|+++|++.+++||+|+||||++++.+||+|+||++|+|+|+|+|+||+++ ++|.|++|++.+
T Consensus 1468 LlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~-~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1468 ILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMN-RQSIFHSMVEAL 1546 (1560)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999975 589999999887
Q ss_pred cC
Q 000846 1249 GG 1250 (1255)
Q Consensus 1249 ~~ 1250 (1255)
+.
T Consensus 1547 ~~ 1548 (1560)
T PTZ00243 1547 GR 1548 (1560)
T ss_pred Ch
Confidence 53
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-143 Score=1435.50 Aligned_cols=1175 Identities=18% Similarity=0.203 Sum_probs=842.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 25 GSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSV 104 (1255)
Q Consensus 25 ~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l 104 (1255)
+..+..++.| ++++.+++.+.... .... .....+++.++++.++..++.....+.....+.++-..+...+|+|+
T Consensus 91 ~~~~~~~~~P---~ll~~li~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~ 165 (1490)
T TIGR01271 91 FGEATKAVQP---LLLGRIIASYDPFN-APER-EIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKT 165 (1490)
T ss_pred HHHHHHHHHH---HHHHHHHHHhccCC-CCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555 67888888653211 1000 11111222223333344444444555556667777777777789999
Q ss_pred HcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 105 LRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGL 184 (1255)
Q Consensus 105 l~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~~~~ 184 (1255)
++++...++. .++|+++|++++|++++.+++... ..+....+.+++++++++.+..+.+++.++++++++++..
T Consensus 166 L~l~~~~~~~-----~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~ 239 (1490)
T TIGR01271 166 LKLSSRVLDK-----ISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQA 239 (1490)
T ss_pred HhCCHHHhcC-----CCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998885 788999999999999999987643 2333444445556666666666678888888889899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 185 LFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSMGMIYVGWA 264 (1255)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (1255)
++.+++.+..++.++..+++.+.+.|.++||++||+|+||+.+.+++.+.++++.+...+...+..+...+. ......+
T Consensus 240 ~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~-~~~~~~~ 318 (1490)
T TIGR01271 240 CLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAF-FFSGFFV 318 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888887777666554333322 1122234
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCCCccc
Q 000846 265 FQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVL-GALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRG 343 (1255)
Q Consensus 265 ~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 343 (1255)
.++.++++.+..+ .+++.+|+++.++.....|+. .+...+..+.++.+|++||.++++.++... .. . .....
T Consensus 319 ~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~-~~---~--~~~~~ 391 (1490)
T TIGR01271 319 VFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKT-LE---Y--NLTTT 391 (1490)
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc-cc---c--cCCCC
Confidence 4556666766544 688899988877766666765 455668889999999999999998653211 10 0 01123
Q ss_pred eEEEEeEEEEcCCCC-------------------------------CCccccceeEEecCCCEEEEEcCCCCcHHHHHHH
Q 000846 344 EIEFRDVYFCYPSRP-------------------------------DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIAL 392 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~-------------------------------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~ 392 (1255)
.|+++|++|.|+... ..++|+|+||+|++||+++|+||||||||||+++
T Consensus 392 ~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~ 471 (1490)
T TIGR01271 392 EVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMM 471 (1490)
T ss_pred ceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHH
Confidence 599999999995310 1358999999999999999999999999999999
Q ss_pred HhcccCCCccEEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCc
Q 000846 393 LQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDG 472 (1255)
Q Consensus 393 l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g 472 (1255)
|+|+++|++|+|.++| +|+||+|+||+|++||+|||.||.+ ...++..++++.+++.+++..+|+|
T Consensus 472 l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g 537 (1490)
T TIGR01271 472 IMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEK 537 (1490)
T ss_pred HhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhcccc
Confidence 9999999999999998 5999999999999999999999864 3344455666777888999999999
Q ss_pred ccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCCeEEEEecCchhhhhcCEE
Q 000846 473 YETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE-AIDKVSKGRTTLIIAHRLSTIRTANLI 551 (1255)
Q Consensus 473 ~~t~~~~~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~~~~~~~~d~i 551 (1255)
++|.+|++|.+|||||||||+||||++++|+|+|||||||+||+++++.+.+ ++.++.+|+|+|+|||+++.+..||+|
T Consensus 538 ~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~i 617 (1490)
T TIGR01271 538 DKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKI 617 (1490)
T ss_pred ccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEE
Confidence 9999999999999999999999999999999999999999999999999887 467777899999999999999889999
Q ss_pred EEEeCCEEEEecChhHHhccCCCChhHHHHHHHhhcc----cC-----CC------CC--CC----cCCc-----cchhh
Q 000846 552 MVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMAS----EN-----DT------SN--DT----FNDF-----SHQMD 605 (1255)
Q Consensus 552 ~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~----~~-----~~------~~--~~----~~~~-----~~~~~ 605 (1255)
++|++|++++.|+++++.+. .+.|...+....... +. .+ .+ .. .++. .+...
T Consensus 618 i~l~~g~i~~~g~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1490)
T TIGR01271 618 LLLHEGVCYFYGTFSELQAK--RPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPE 695 (1490)
T ss_pred EEEECCEEEEEcCHHHHHhc--ChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999863 345554442100000 00 00 00 00 0000 00000
Q ss_pred hhhhh-------h---------------ccCCCCCCcccCCCCC-----------CCCCCCCCC----------CC----
Q 000846 606 AINLY-------K---------------RTIAPSPMSMRSSAAS-----------TPALNPFSP----------AL---- 638 (1255)
Q Consensus 606 ~~~~~-------~---------------~~~~~~~~~~~~~~~~-----------~~~~~~~~~----------~~---- 638 (1255)
..... . ................ .+...+... ..
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1490)
T TIGR01271 696 FAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSV 775 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccch
Confidence 00000 0 0000000000000000 000000000 00
Q ss_pred ----cC---CC--CC----cc----c--------c---------cCCC-----C---CCC-----cc-ccccccCCCchH
Q 000846 639 ----SV---GT--PY----SY----T--------I---------QYDP-----D---DDS-----LG-DRIDQSSYATPS 670 (1255)
Q Consensus 639 ----~~---~~--~~----~~----~--------~---------~~~~-----~---~~~-----~~-~~~~~~~~~~~~ 670 (1255)
.. .. .. .. . . ..+. . ++. .. +...........
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~v 855 (1490)
T TIGR01271 776 LQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNT 855 (1490)
T ss_pred hhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHH
Confidence 00 00 00 00 0 0 0000 0 000 00 000001122223
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h-cCChh-h-h---------hhhHHHH-HHHHHHH
Q 000846 671 QWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIY--F-RTDKS-E-I---------KSKSRTL-SLFFLGV 735 (1255)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~-~~~~~-~-~---------~~~~~~~-~~~~~~~ 735 (1255)
++++++... .+..+++.+++.++...+..+..+|+..+...- + ..... . . .....++ ..+++++
T Consensus 856 Y~~Y~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1490)
T TIGR01271 856 YLRYITTNR-NLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGT 934 (1490)
T ss_pred HHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHH
Confidence 334433321 222222223333333334444444444332100 0 00000 0 0 0011122 2334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000846 736 AVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFG 815 (1255)
Q Consensus 736 ~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~ 815 (1255)
.++..++.+++.+++.+.+.+.+.++|.+++++++++|++||+ .+|+|+++|||++|++.++..++..+..++..++.
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~ 1012 (1490)
T TIGR01271 935 ADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLN--TMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLI 1012 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667778888899999999999999999999999999998 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHH
Q 000846 816 SVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMK---SMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGL 892 (1255)
Q Consensus 816 ~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~ 892 (1255)
+++.++++++++|.++++ ++|+++++++.+..+.+ ...+...........++.|++.|+.|||+|+.++++.++
T Consensus 1013 ~i~~l~~i~~~~p~l~l~---~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~ 1089 (1490)
T TIGR01271 1013 VLGAIFVVSVLQPYIFIA---AIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETL 1089 (1490)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHH
Confidence 999999988888875443 34444333333333332 222233344456778999999999999999999999999
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 893 FKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTA--LAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSD 970 (1255)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 970 (1255)
+.+..+...+..........+......++..+... +.++++. ..++.+.+..++.+.......+..+...+.+
T Consensus 1090 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~ 1164 (1490)
T TIGR01271 1090 FHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEVGIILTLAMNILSTLQWAVNSSID 1164 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998876544433222222222222222211111 1122222 2234455555555555666677778888899
Q ss_pred HHHHHHHHHHHHHHHcccCCCCCCCC---------------CCccccccccccEEEEEEEEECCCCCCCccccceeEEEe
Q 000846 971 ISKGSNAVRSVFAILDRRSEIDPDSP---------------QGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIE 1035 (1255)
Q Consensus 971 ~~~~~~a~~ri~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~ 1035 (1255)
++..+.+++|+.++++.+++...... ..++..||..|.|+|+||+|+|++. ++++|+||||+|+
T Consensus 1165 le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~ 1243 (1490)
T TIGR01271 1165 VDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVE 1243 (1490)
T ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEc
Confidence 99999999999999987665432111 0112347778999999999999743 4679999999999
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHH
Q 000846 1036 AGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARES 1115 (1255)
Q Consensus 1036 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ 1115 (1255)
|||+||||||||||||||+++|+|+|+ ++|+|+|||+||++++++++|++|++|||||+||+||||+||++.. +++|+
T Consensus 1244 ~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tde 1321 (1490)
T TIGR01271 1244 GGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDE 1321 (1490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHH
Confidence 999999999999999999999999998 7999999999999999999999999999999999999999997653 57999
Q ss_pred HHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC
Q 000846 1116 EIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM 1195 (1255)
Q Consensus 1116 ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~ 1195 (1255)
++|+|++.++++++|.++|+||||+|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++.++
T Consensus 1322 ei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~ 1401 (1490)
T TIGR01271 1322 EIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS 1401 (1490)
T ss_pred HHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhhhcCchhHHHHhhhcC
Q 000846 1196 GRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGG 1250 (1255)
Q Consensus 1196 ~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~~ 1250 (1255)
+||||+||||++++.+||||+||++|+|+|.|+|++|++. +|.|++|++++..
T Consensus 1402 ~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~--~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1402 NCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE--TSLFKQAMSAADR 1454 (1490)
T ss_pred CCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC--CcHHHHHHHHhCh
Confidence 9999999999999999999999999999999999999974 8999999987653
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-112 Score=990.11 Aligned_cols=574 Identities=37% Similarity=0.574 Sum_probs=545.8
Q ss_pred hHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 669 PSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHY 748 (1255)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 748 (1255)
..+|+++.+..++|+++..+.++.++......+.|++.+++++.+...++ ........+..+.++.++..++..++.+
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~--~~~~~~~~~~~l~~l~~~~a~~~~~r~~ 210 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDD--SADALKRACTILLGLFLIGALANAIRGG 210 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999998876221 2334445566777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 749 SFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSW 828 (1255)
Q Consensus 749 ~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~ 828 (1255)
++.++++++..++|..+|+++++++++||| +|.+|++++|+++|+..+.+.++..+...+.+.+..++++++|+++||
T Consensus 211 ~~~~a~~rv~~rlR~~lF~sil~QdiaFFD--~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~ 288 (716)
T KOG0058|consen 211 LLQYAGERVVARLRTDLFRSLLRQDIAFFD--ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSW 288 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 999999999999999999999999999999 788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHH
Q 000846 829 RLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHS 908 (1255)
Q Consensus 829 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~ 908 (1255)
.|+++.++.+|++++...+..++.++.+++.++..++.+..+.|.+.+++|||+|+.|++..++|.+..++..+...|..
T Consensus 289 ~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a 368 (716)
T KOG0058|consen 289 RLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEA 368 (716)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 000846 909 WYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRR 988 (1255)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~ 988 (1255)
.....++..+++...+....++|||++++..|.++.|++.+++++.......+..+...++++.++..|.+|+++++|++
T Consensus 369 ~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~ 448 (716)
T KOG0058|consen 369 VAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRK 448 (716)
T ss_pred HHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceE
Q 000846 989 SEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068 (1255)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I 1068 (1255)
|..+.+. ...|...+|.|+|+||+|+||+||+.+||+|+||+|+|||+||+||||||||||++++|+|||+|++|+|
T Consensus 449 P~i~~~G---~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I 525 (716)
T KOG0058|consen 449 PRIPLTG---TLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI 525 (716)
T ss_pred CCCCCCC---ccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 9876552 1112136899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCC
Q 000846 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQL 1148 (1255)
Q Consensus 1069 ~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 1148 (1255)
++||+||++++.++||++||+|.|||+||++||+|||.||.+++++|||.+|+++|++||||.++|+||||.|||+|.+|
T Consensus 526 llDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qL 605 (716)
T KOG0058|consen 526 LLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQL 605 (716)
T ss_pred EECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecC
Q 000846 1149 SGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGS 1228 (1255)
Q Consensus 1149 SgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~ 1228 (1255)
||||||||||||||+|||+||||||||||||.++|..||++|++..+++|||+|||||+||++||+|+|+++|+|+|.|+
T Consensus 606 SGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 606 SGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred cchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCchhHHHHhhhcC
Q 000846 1229 HNELVALSRGGAYYSLIKPQGG 1250 (1255)
Q Consensus 1229 ~~eLl~~~~~g~y~~l~~~~~~ 1250 (1255)
|+|||++ ++|.|++|+++|..
T Consensus 686 h~eLl~~-~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 686 HDELLSK-PNGLYAKLVQRQLD 706 (716)
T ss_pred HHHHhhC-cccHHHHHHHHhcc
Confidence 9999997 67999999999853
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-106 Score=944.97 Aligned_cols=574 Identities=37% Similarity=0.571 Sum_probs=530.1
Q ss_pred chHHHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 3 GNDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEG 82 (1255)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1255)
.+++|+.|+.+. |..+..++++.++.....-+.|.++|+++|.... ...+. +.+...+..+.++.++..++.+++.
T Consensus 134 ~~~rl~~l~~~~-~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~-~~~~~--~~~~~~~~~l~~l~~~~a~~~~~r~ 209 (716)
T KOG0058|consen 134 LLKRLLGLLKPE-WKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISE-GDDSA--DALKRACTILLGLFLIGALANAIRG 209 (716)
T ss_pred HHHHHHHHhchh-HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHh-ccchH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899998765 4455667666666666666666899999998765 11111 3455556677778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 83 LCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSF 162 (1255)
Q Consensus 83 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (1255)
+++.++++++..++|.++|+++++|+++|||. +.+|+++||++.|+..+.+.++..+...+.+++..++++++||
T Consensus 210 ~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~-----nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~ 284 (716)
T KOG0058|consen 210 GLLQYAGERVVARLRTDLFRSLLRQDIAFFDE-----NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMF 284 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 99999999999999999999999999999997 7888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 000846 163 ILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELG 242 (1255)
Q Consensus 163 ~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~ 242 (1255)
++||+|+++.++.+|+++++..++++..++..++.|++.++++..++|.+.+|||||+|+.|+.+.+||.+..++..+..
T Consensus 285 ~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~ 364 (716)
T KOG0058|consen 285 SLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLS 364 (716)
T ss_pred hhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 243 IKQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEM 321 (1255)
Q Consensus 243 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 321 (1255)
.|.+...+.+...+ ...+.....++|+|++++..|.+|.|.+.++++|......++..+...++.++++..|.+|++|+
T Consensus 365 ~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel 444 (716)
T KOG0058|consen 365 KKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFEL 444 (716)
T ss_pred HHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 99888888887776 56667788899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCc
Q 000846 322 VDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVE 401 (1255)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~ 401 (1255)
+|.+|..+.+. ...+...+|.|+|+||+|+||.+|+.++|+|+||+|+|||+||+||||||||||++++|.++|+|++
T Consensus 445 ~dr~P~i~~~G--~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pts 522 (716)
T KOG0058|consen 445 MDRKPRIPLTG--TLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS 522 (716)
T ss_pred hccCCCCCCCC--ccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 99998876441 1122257899999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCC
Q 000846 402 GEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLG 481 (1255)
Q Consensus 402 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 481 (1255)
|+|.+||+||++++.+++|++||+|.|||.||++||+|||.||.+++++|++.+|++++++|+||..+|+||||.|||+|
T Consensus 523 G~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG 602 (716)
T KOG0058|consen 523 GRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKG 602 (716)
T ss_pred CeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEE
Q 000846 482 FQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVE 561 (1255)
Q Consensus 482 ~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 561 (1255)
.+|||||||||||||||++||.||||||+|||||+++|..|+++|.+..+++|||+|+|||+++++||+|+|+++|+|+|
T Consensus 603 ~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E 682 (716)
T KOG0058|consen 603 SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVE 682 (716)
T ss_pred ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhccCCCChhHHHHHHHhhcc
Q 000846 562 SGSHNELMNRGEGGEYYQMVELQQMAS 588 (1255)
Q Consensus 562 ~g~~~~l~~~~~~~~~~~~~~~~~~~~ 588 (1255)
.|+|+||+++ .++.|+++++.|....
T Consensus 683 ~G~h~eLl~~-~~gly~~Lv~~q~~~~ 708 (716)
T KOG0058|consen 683 MGTHDELLSK-PNGLYAKLVQRQLDSG 708 (716)
T ss_pred cccHHHHhhC-cccHHHHHHHHhcccC
Confidence 9999999997 4689999998876543
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-103 Score=965.11 Aligned_cols=575 Identities=42% Similarity=0.708 Sum_probs=542.9
Q ss_pred chHHHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 3 GNDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEG 82 (1255)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1255)
++.+++++..| +|+++++|++++++.|+.+|++.+++++++..+...+.+... .....|+++++++++..+++.+++.
T Consensus 651 s~~~i~k~~~p-e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~-~~~~~~al~f~~l~~~~~i~~~~q~ 728 (1228)
T KOG0055|consen 651 SFWRIFKLNKP-EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELK-REVRAWALIFLGLGIVSGITNFLQH 728 (1228)
T ss_pred cHHHHHHhccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999866 788899999999999999999999999999988754322222 2233488889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 83 LCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSF 162 (1255)
Q Consensus 83 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (1255)
+++..+++++..|+|..+|+++++++++|||.. +++ |.|.+|+.+|...++..+++.+..+++++..+++++++.|
T Consensus 729 ~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~---~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf 804 (1228)
T KOG0055|consen 729 YFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDP---ENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAF 804 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---ccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999984 455 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 000846 163 ILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELG 242 (1255)
Q Consensus 163 ~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~ 242 (1255)
+++|+|+++++++.|++++..+...+.+.....+..+...+++.++.|++.|||||++|+.|+++.+.|.+..++..+..
T Consensus 805 ~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~ 884 (1228)
T KOG0055|consen 805 IYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSS 884 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 243 IKQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEM 321 (1255)
Q Consensus 243 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 321 (1255)
.|.+.+.++.+++. .++++.+++.+|+|++++.+|.+++..++.+++.+.+....+.+.....+++.+++.|+.+|+++
T Consensus 885 ~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i 964 (1228)
T KOG0055|consen 885 FKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEI 964 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 99999999999988 88899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCc
Q 000846 322 VDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVE 401 (1255)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~ 401 (1255)
+|++|+++++.+.+...++.+|+|+|+||+|+||++|+.++|+|+||+|++||++||||||||||||++.+|.|+|+|++
T Consensus 965 ~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~ 1044 (1228)
T KOG0055|consen 965 LDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA 1044 (1228)
T ss_pred hcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 99998777654334445678899999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCC
Q 000846 402 GEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLG 481 (1255)
Q Consensus 402 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 481 (1255)
|.|.|||+|++++++++||++||.|+|||.||++||||||+||.+.++.+|+.+||+.+++|+||..||+||||.|||+|
T Consensus 1045 G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG 1124 (1228)
T KOG0055|consen 1045 GKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERG 1124 (1228)
T ss_pred CeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCccc
Confidence 99999999999999999999999999999999999999999996668999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEE
Q 000846 482 FQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVE 561 (1255)
Q Consensus 482 ~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 561 (1255)
.+||||||||||||||++|||+||||||+|||||.++|+.+|++|++.+.|||+|+|+|||+++++||.|+|+++|+|+|
T Consensus 1125 ~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1125 VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVE 1204 (1228)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhccCCCChhHHHHHHHh
Q 000846 562 SGSHNELMNRGEGGEYYQMVELQQ 585 (1255)
Q Consensus 562 ~g~~~~l~~~~~~~~~~~~~~~~~ 585 (1255)
+|+|++|++ .+|.|+++++.|.
T Consensus 1205 ~GtH~~L~~--~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1205 QGTHDELLA--KRGIYFRLVQLQS 1226 (1228)
T ss_pred cccHHHHHh--CCCchHHHhhhcc
Confidence 999999999 5899999988764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-94 Score=885.78 Aligned_cols=567 Identities=31% Similarity=0.477 Sum_probs=525.2
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 672 WRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFS 751 (1255)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 751 (1255)
.+++....++|..+.-.++.+++..++..+.|++...++|..... ...+.....++.+++.+++..+..+++.+.+.
T Consensus 143 ~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~---~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 143 SWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPD---ASRSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666677777777777888888888888877643 22344555667777888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 752 VMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLT 831 (1255)
Q Consensus 752 ~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~ 831 (1255)
+.+.++...+-.++|+|++++|++||. ++++|++++|+ +|.+.+++++...+...+..+..+++.++++++++|.++
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~--~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~ 296 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFE--KRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLT 296 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHcc--CCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 78999999999 789999999999999999989999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHH
Q 000846 832 LVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYS 911 (1255)
Q Consensus 832 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 911 (1255)
++.++.+|+.++..+...+++++..++..+..+...+...|++.|++|||+.+.|.++..+|++.+.+..+..++.....
T Consensus 297 li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~ 376 (709)
T COG2274 297 LIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLA 376 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999988899998888888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Q 000846 912 GIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEI 991 (1255)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~ 991 (1255)
.....+.+++..+..++++|+|++++..|.+|+|+++++.+....+..++..+...+.+++....+.+|+.++++.++|.
T Consensus 377 ~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~ 456 (709)
T COG2274 377 LILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQ 456 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEEC
Q 000846 992 DPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMD 1071 (1255)
Q Consensus 992 ~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~id 1071 (1255)
+.+.. ....++..|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+|+|.|+|+|++|+|++|
T Consensus 457 ~~~~~--~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~d 533 (709)
T COG2274 457 EGDKT--LIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLD 533 (709)
T ss_pred ccccc--cccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 54332 12234468999999999999755 3479999999999999999999999999999999999999999999999
Q ss_pred CeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChH
Q 000846 1072 EQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGG 1151 (1255)
Q Consensus 1072 G~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 1151 (1255)
|+|++++++.++|++|+|||||++||+|||||||++++|++++||+++||+.+++|+||.++|.||||+|||+|.+||||
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGG 613 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGG 613 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHH
Q 000846 1152 QKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNE 1231 (1255)
Q Consensus 1152 QkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~e 1231 (1255)
|||||+|||||++||+||||||||||||++||+.|.+.|.+..++||+|+||||++++++||||+|||+|||+|+|+|+|
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCchhHHHHhhhc
Q 000846 1232 LVALSRGGAYYSLIKPQG 1249 (1255)
Q Consensus 1232 Ll~~~~~g~y~~l~~~~~ 1249 (1255)
|++. +|.|+++|+.|.
T Consensus 694 ll~~--~g~y~~l~~~q~ 709 (709)
T COG2274 694 LLAQ--GGLYARLYQQQE 709 (709)
T ss_pred HHHh--cChHHHHHhccC
Confidence 9996 999999998763
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-90 Score=843.37 Aligned_cols=547 Identities=33% Similarity=0.491 Sum_probs=503.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 21 FGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEY 100 (1255)
Q Consensus 21 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~ 100 (1255)
+..++..+.++..| ++...++|....... . +.+....+.+++++++.+++.+++.+...+.+.|+..++-.++
T Consensus 161 ~~sl~l~i~~l~~p---~~~q~viD~Vl~~~~--~--~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~ 233 (709)
T COG2274 161 LASLLLQLLALATP---LFSQIVIDKVLPDAS--R--STLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRF 233 (709)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHhhhccCc--h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33344444555555 677888998654321 1 4566666777778888899999999999999999999999999
Q ss_pred HHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 101 LKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFI 180 (1255)
Q Consensus 101 ~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~ 180 (1255)
++|++++|++||.+ .++|++++|+ +|.+.|+++++..+...+.+++++++.+++|++++|+|++++++.+|+++
T Consensus 234 ~~hll~Lpl~~f~~-----r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~ 307 (709)
T COG2274 234 FRHLLRLPLSYFEK-----RSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNV 307 (709)
T ss_pred HHHHHcCcHHHccC-----CChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997 7788999999 69999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000846 181 VPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSM-GMI 259 (1255)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 259 (1255)
++..++.+.+++..++..+..++.++...|++.||++||+.+.|..+..+|++...+..+.+.+..........+. .+.
T Consensus 308 l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 387 (709)
T COG2274 308 LITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQ 387 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988887776666 555
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCC
Q 000846 260 YVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALS 339 (1255)
Q Consensus 260 ~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~ 339 (1255)
.+..++++|+|+++|++|++|.|.++++.+.......|+..+...+..+++++.+.+|+.++++.++|.+.+.. ....+
T Consensus 388 ~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~-~~~~~ 466 (709)
T COG2274 388 QLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT-LIHLP 466 (709)
T ss_pred HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc-ccccc
Confidence 67788899999999999999999999999999999999999999999999999999999999999887543221 23456
Q ss_pred CccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHH
Q 000846 340 YVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL 419 (1255)
Q Consensus 340 ~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 419 (1255)
+..|+|+|+||+|+|+.++ +++|+|+||+|+|||++||||+||||||||+|+|.|+|+|++|+|++||.|++++++..+
T Consensus 467 ~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 467 KLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred ccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHH
Confidence 6789999999999998653 479999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhc
Q 000846 420 RSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALI 499 (1255)
Q Consensus 420 r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~ 499 (1255)
|++||||+||+.||+|||+|||+++.|+.++|++++||+.+++|+||.++|.||+|.+||+|.+||||||||++|||||+
T Consensus 546 R~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl 625 (709)
T COG2274 546 RRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALL 625 (709)
T ss_pred HhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhccCCCChhHH
Q 000846 500 RDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQ 579 (1255)
Q Consensus 500 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 579 (1255)
++|+||||||||||||+++|+.|.+.|.+..+|+|+|+||||++++++||||+||++|+|+++|+|+|+++. .|.|++
T Consensus 626 ~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~--~g~y~~ 703 (709)
T COG2274 626 SKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ--GGLYAR 703 (709)
T ss_pred cCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh--cChHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985 789999
Q ss_pred HHHHH
Q 000846 580 MVELQ 584 (1255)
Q Consensus 580 ~~~~~ 584 (1255)
++..|
T Consensus 704 l~~~q 708 (709)
T COG2274 704 LYQQQ 708 (709)
T ss_pred HHhcc
Confidence 88654
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-88 Score=837.15 Aligned_cols=561 Identities=38% Similarity=0.580 Sum_probs=502.2
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 673 RLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSV 752 (1255)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 752 (1255)
+++++.+ .+ .+.++.++.++...+....+++++.+++... ........+..+++++.++..++.++..+...+
T Consensus 6 ~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 78 (567)
T COG1132 6 RLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-----ADLGELLELLLLLLLLALLGGVLRALQSYLGSR 78 (567)
T ss_pred HHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433 56 7777777788888888888888888888776 111222334445555666777888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 753 MGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTL 832 (1255)
Q Consensus 753 ~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l 832 (1255)
.+.+...++|.++++++++.|++||+ ++++|++++|+++|++.++..+......+...++.+++.+++++..+|.+++
T Consensus 79 ~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 156 (567)
T COG1132 79 LGQKIVADLRRDLFEKLLRLPLSFFD--KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLAL 156 (567)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHhC--cCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88999999999999999999999999 6789999999999999999999988666666788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 000846 833 VMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSG 912 (1255)
Q Consensus 833 ~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1255)
++++..|++........+..+...+..++..++....+.|.+.|+++||+|+.++...+++.+..+...+...+..+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (567)
T COG1132 157 ILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEA 236 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888776666555555677777888888999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Q 000846 913 IGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEID 992 (1255)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 992 (1255)
...++...+..+..++++++|..++..+.+++|.+.+++.+......++..+......+..+..+.+|++++++.+++..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 316 (567)
T COG1132 237 LLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVE 316 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999866533
Q ss_pred CCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECC
Q 000846 993 PDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDE 1072 (1255)
Q Consensus 993 ~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG 1072 (1255)
..... .....|+|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||
T Consensus 317 ~~~~~----~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg 390 (567)
T COG1132 317 DPPDP----LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDG 390 (567)
T ss_pred CCCCC----CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECC
Confidence 22111 1224578999999999974 45799999999999999999999999999999999999999999999999
Q ss_pred eecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHH
Q 000846 1073 QDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQ 1152 (1255)
Q Consensus 1073 ~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 1152 (1255)
+||++++.++||++|++|||||+||+|||+|||++|+|+++|||+++|++.++++|||.++|+||||.|||+|.+|||||
T Consensus 391 ~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQ 470 (567)
T COG1132 391 IDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQ 470 (567)
T ss_pred EehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHH
Q 000846 1153 KQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1153 kQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
|||||||||++++|||||||||||+||++||+.|++++++..++||+|+||||++|+++||+|+|||+|+|+|.|+|+||
T Consensus 471 rQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eL 550 (567)
T COG1132 471 RQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEEL 550 (567)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HhhhcCchhHHHHhhhcC
Q 000846 1233 VALSRGGAYYSLIKPQGG 1250 (1255)
Q Consensus 1233 l~~~~~g~y~~l~~~~~~ 1250 (1255)
+++ +|.|++||+.|..
T Consensus 551 l~~--~g~y~~l~~~~~~ 566 (567)
T COG1132 551 LAK--GGLYARLYQAQGG 566 (567)
T ss_pred HHc--CCHHHHHHHHhhc
Confidence 986 9999999998864
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-87 Score=833.84 Aligned_cols=568 Identities=21% Similarity=0.314 Sum_probs=487.4
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 671 QWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSF 750 (1255)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 750 (1255)
+++++++.++.++.++++++++++..++.+..|++++.+++.....+.. ......+...++++.++..++.+++.+..
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP--REALLPPFILLILLFVLRALLAWLRERVG 87 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777888888888999999999999999999999999876421111 11122233445555667778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 751 SVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRL 830 (1255)
Q Consensus 751 ~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l 830 (1255)
.+.+.++..++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+
T Consensus 88 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 165 (588)
T PRK11174 88 FKAGQHIRQQIRQQVLDKLQQLGPAWIQ--GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAA 165 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhc--cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 77899999999999999999999999999999899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHH
Q 000846 831 TLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWY 910 (1255)
Q Consensus 831 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1255)
++++++++|+.+.......+..+...++..+..++....+.|.++|+++||+|+.|+++.++|.+..++..+...+..+.
T Consensus 166 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 245 (588)
T PRK11174 166 GLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRM 245 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887776666666666666777777888899999999999999999999999999999999998888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 911 SGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHL---------FQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSV 981 (1255)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri 981 (1255)
......+..++..+...++.++++..+ .|.+++|++ +.++++......++..+...+..+..+..+.+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri 324 (588)
T PRK11174 246 AFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESL 324 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666666666665555555555544 377777754 1112333345577888888899999999999999
Q ss_pred HHHHcccCCCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 000846 982 FAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
.++++.+++.+.... .+.+.+..+.|+|+||+|.|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|
T Consensus 325 ~~~l~~~~~~~~~~~--~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 325 VTFLETPLAHPQQGE--KELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred HHHHcCCCcccCCCc--cccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 999987653221111 0111112457999999998863 357999999999999999999999999999999999999
Q ss_pred CCCCceEEECCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHcccccccccc
Q 000846 1062 DPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYC 1141 (1255)
Q Consensus 1062 ~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~v 1141 (1255)
|++|+|++||+|+++++.+++|++|+||||||+||+|||||||++|+|+++|||+++|++.+++++||.++|+||||.|
T Consensus 401 -p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~v 479 (588)
T PRK11174 401 -PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPI 479 (588)
T ss_pred -CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCC
Q 000846 1142 GERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNG 1221 (1255)
Q Consensus 1142 ge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G 1221 (1255)
||+|.+||||||||||||||++++|+|||||||||+||++||+.|+++|++..+++|+|+||||++++.+||+|+||++|
T Consensus 480 ge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G 559 (588)
T PRK11174 480 GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDG 559 (588)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred EEEEecCHHHHHhhhcCchhHHHHhhhcC
Q 000846 1222 RVVEQGSHNELVALSRGGAYYSLIKPQGG 1250 (1255)
Q Consensus 1222 ~ive~G~~~eLl~~~~~g~y~~l~~~~~~ 1250 (1255)
+++|.|+|+||+++ +|.|++|++.|.+
T Consensus 560 ~i~e~G~~~eL~~~--~~~y~~l~~~q~~ 586 (588)
T PRK11174 560 QIVQQGDYAELSQA--GGLFATLLAHRQE 586 (588)
T ss_pred eEeecCCHHHHHhc--chHHHHHHHHhhc
Confidence 99999999999985 8999999988764
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-86 Score=837.36 Aligned_cols=565 Identities=32% Similarity=0.495 Sum_probs=505.5
Q ss_pred hHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 669 PSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHY 748 (1255)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 748 (1255)
..+++++++.++.|+.+..++++.++..++....|++++.+++....... .........+++++.++..+..+++.+
T Consensus 147 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (711)
T TIGR00958 147 DLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG---PPALASAIFFMCLLSIASSVSAGLRGG 223 (711)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888889999999999987753221 111112233344555667777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 749 SFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSW 828 (1255)
Q Consensus 749 ~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~ 828 (1255)
++.+.+.++..++|+++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|
T Consensus 224 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~--~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~ 301 (711)
T TIGR00958 224 SFNYTMARINLRIREDLFRSLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSP 301 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999998 678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHH
Q 000846 829 RLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHS 908 (1255)
Q Consensus 829 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~ 908 (1255)
.+++++++.+|+.+.......+..++..++.++..++....+.|++.|+++||+|+.|+++.++|.+..++..+...+..
T Consensus 302 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 381 (711)
T TIGR00958 302 RLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKA 381 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888887777766677777777778888888999999999999999999999999999999999998888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 000846 909 WYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRR 988 (1255)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~ 988 (1255)
............+..+..++++++|++++..|.++.|+++++..+......++..+.....++.++..+.+|+.++++.+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 461 (711)
T TIGR00958 382 LAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRK 461 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77777777777778888888999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceE
Q 000846 989 SEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068 (1255)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I 1068 (1255)
++.+.... ..+++..+.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|
T Consensus 462 ~~~~~~~~---~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I 538 (711)
T TIGR00958 462 PNIPLTGT---LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538 (711)
T ss_pred CCCCCCCC---CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 65432211 112234578999999999987666789999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCC
Q 000846 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQL 1148 (1255)
Q Consensus 1069 ~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 1148 (1255)
++||+|+++++.+++|++|+||||||++|+|||||||.+|.++.+|+++++|++.+++++|++++|+||||.+||+|.+|
T Consensus 539 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~L 618 (711)
T TIGR00958 539 LLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQL 618 (711)
T ss_pred EECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcC
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecC
Q 000846 1149 SGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGS 1228 (1255)
Q Consensus 1149 SgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~ 1228 (1255)
|||||||||||||++++|+|||||||||+||+++|+.|++ ....+++|+|+||||++++..||+|+||++|+|+|.|+
T Consensus 619 SGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt 696 (711)
T TIGR00958 619 SGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGT 696 (711)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeC
Confidence 9999999999999999999999999999999999999999 33457999999999999999999999999999999999
Q ss_pred HHHHHhhhcCchhHHHH
Q 000846 1229 HNELVALSRGGAYYSLI 1245 (1255)
Q Consensus 1229 ~~eLl~~~~~g~y~~l~ 1245 (1255)
|+||+++ +|.|++|+
T Consensus 697 ~~eL~~~--~~~y~~lv 711 (711)
T TIGR00958 697 HKQLMED--QGCYKHLV 711 (711)
T ss_pred HHHHHhC--CCchHhcC
Confidence 9999986 78999874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-84 Score=825.96 Aligned_cols=562 Identities=25% Similarity=0.333 Sum_probs=498.7
Q ss_pred HHHHHHH-hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 671 QWRLLKI-NMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYS 749 (1255)
Q Consensus 671 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 749 (1255)
+++++++ .++.++.+...++++++..++....|+.++.+++....... ......+.+.++++.++..++.+++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 199 (686)
T TIGR03797 123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD---RSLLVQIALALLAAAVGAAAFQLAQSLA 199 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 34556666777777778788888888888988887653211 1222334455566667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 750 FSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWR 829 (1255)
Q Consensus 750 ~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~ 829 (1255)
..+.+.++..++|.++|++++++|++||+ ++++|++++|+. |++.+++.+...+...+..++.++++++++++++|.
T Consensus 200 ~~~~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (686)
T TIGR03797 200 VLRLETRMDASLQAAVWDRLLRLPVSFFR--QYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWK 276 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 788999999997 799999998887777777777778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHH
Q 000846 830 LTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSW 909 (1255)
Q Consensus 830 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1255)
+++++++++|+.+...+...+..++..++..+...+..+.+.|++.|+++||+++.|+++.++|.+..++..+...+..+
T Consensus 277 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 356 (686)
T TIGR03797 277 LALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQR 356 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888877777666666777777777888889999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Q 000846 910 YSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRS 989 (1255)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 989 (1255)
.......+..++..+..++++|+|++++..|.+|+|+++++.++...+..++..+...+.+++.+..+.+|+.++++.++
T Consensus 357 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 436 (686)
T TIGR03797 357 IENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALP 436 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEE
Q 000846 990 EIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVF 1069 (1255)
Q Consensus 990 ~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~ 1069 (1255)
+.+... ..+.+..|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 437 e~~~~~----~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 511 (686)
T TIGR03797 437 EVDEAK----TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511 (686)
T ss_pred ccccCc----CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence 533211 1111245789999999999743 45799999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCC
Q 000846 1070 MDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLS 1149 (1255)
Q Consensus 1070 idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 1149 (1255)
+||+|+++++.+++|++|+||||||.+|+|||||||++++| ++++++++|++.+++++++.++|+||||.+||+|.+||
T Consensus 512 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LS 590 (686)
T TIGR03797 512 YDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLS 590 (686)
T ss_pred ECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCC
Confidence 99999999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCH
Q 000846 1150 GGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSH 1229 (1255)
Q Consensus 1150 gGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~ 1229 (1255)
|||||||+||||++++|+|||||||||+||++||+.|++.|++. ++|+|+||||++++++||+|+||++|+|+|.|+|
T Consensus 591 GGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~ 668 (686)
T TIGR03797 591 GGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTY 668 (686)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999986 6899999999999999999999999999999999
Q ss_pred HHHHhhhcCchhHHHHhhh
Q 000846 1230 NELVALSRGGAYYSLIKPQ 1248 (1255)
Q Consensus 1230 ~eLl~~~~~g~y~~l~~~~ 1248 (1255)
+||+++ +|.|++|++.|
T Consensus 669 ~~Ll~~--~~~y~~l~~~q 685 (686)
T TIGR03797 669 DELMAR--EGLFAQLARRQ 685 (686)
T ss_pred HHHHhC--CcHHHHHHHhc
Confidence 999985 89999999865
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-84 Score=810.68 Aligned_cols=566 Identities=19% Similarity=0.239 Sum_probs=479.5
Q ss_pred hHHHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 4 NDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGL 83 (1255)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1255)
++++++|.+++++ .++++++++++.++..+..+++++.++|.+..... .. ..+..+...++++.++..++.+++.+
T Consensus 10 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (588)
T PRK11174 10 TRWLKQQSKPAKR-WLNLSILLGFLSGLLLIAQAWLLATILQALIIENI-PR--EALLPPFILLILLFVLRALLAWLRER 85 (588)
T ss_pred hHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ch--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668888876654 45667777777777777788999999997532111 11 22333344445555667788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 84 CWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFI 163 (1255)
Q Consensus 84 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (1255)
+..+.+.++..++|.++|++++++|+++|++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++
T Consensus 86 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-----~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 160 (588)
T PRK11174 86 VGFKAGQHIRQQIRQQVLDKLQQLGPAWIQG-----KPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFP 160 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhhcc-----CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 78889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 000846 164 LSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGI 243 (1255)
Q Consensus 164 ~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~ 243 (1255)
++|++++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...
T Consensus 161 ~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 240 (588)
T PRK11174 161 INWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTM 240 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888889999999999999999999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 244 KQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSI---------FVAGVSIIMGGLSVLGALPNLTAITEAKV 313 (1255)
Q Consensus 244 ~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (1255)
+..+..+...++. .+..+..+++.+++++.+ .|.++.|.+ +++..+......|+..+...+..+++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~ 319 (588)
T PRK11174 241 EVLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVG 319 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766655554443 222233333334454443 377777753 12223334456788888888899999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHH
Q 000846 314 AATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALL 393 (1255)
Q Consensus 314 a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l 393 (1255)
+.+|+.++++.+++.+... ....+.+..+.|+|+||+|.|++ ++++|+|+||+++|||++|||||||||||||+++|
T Consensus 320 ~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL 396 (588)
T PRK11174 320 AAESLVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNAL 396 (588)
T ss_pred HHHHHHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 9999999998765322111 10111122457999999987763 35699999999999999999999999999999999
Q ss_pred hcccCCCccEEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcc
Q 000846 394 QRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGY 473 (1255)
Q Consensus 394 ~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~ 473 (1255)
+|+| |++|+|.+||+|+++++.+++|++|+||||+|+||++||+|||++|++++++++++++|+.+++++++.++|+|+
T Consensus 397 ~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~ 475 (588)
T PRK11174 397 LGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGL 475 (588)
T ss_pred hcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccc
Confidence 9999 999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred cchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEE
Q 000846 474 ETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMV 553 (1255)
Q Consensus 474 ~t~~~~~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~v 553 (1255)
||.+||+|.+|||||||||+||||+++||+|||||||||+||+++++.+++.|+++.+++|+|+||||+++++.||+|++
T Consensus 476 dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iiv 555 (588)
T PRK11174 476 DTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWV 555 (588)
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred EeCCEEEEecChhHHhccCCCChhHHHHHHHh
Q 000846 554 LKAGKVVESGSHNELMNRGEGGEYYQMVELQQ 585 (1255)
Q Consensus 554 l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 585 (1255)
|++|+++++|+|+||+++ ++.|+++++.|.
T Consensus 556 l~~G~i~e~G~~~eL~~~--~~~y~~l~~~q~ 585 (588)
T PRK11174 556 MQDGQIVQQGDYAELSQA--GGLFATLLAHRQ 585 (588)
T ss_pred EeCCeEeecCCHHHHHhc--chHHHHHHHHhh
Confidence 999999999999999984 689999987765
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-84 Score=863.42 Aligned_cols=569 Identities=29% Similarity=0.441 Sum_probs=485.9
Q ss_pred HHHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 5 DGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLC 84 (1255)
Q Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1255)
.+++++..++.+ .++++++++++.++..|+++++++.+++.+.... ... .....+++++++++++.+++.+++.++
T Consensus 814 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~-~~~~~~~l~~~~~~i~~~~~~~l~~~~ 889 (1466)
T PTZ00265 814 RIVYREIFSYKK-DVTIIALSILVAGGLYPVFALLYAKYVSTLFDFA--NLE-ANSNKYSLYILVIAIAMFISETLKNYY 889 (1466)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544333 3677888888999999999999999999764211 111 224456677777788888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 85 WTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFIL 164 (1255)
Q Consensus 85 ~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (1255)
..+.++++..++|.++|++++++|++|||+. ++++|++++|+++|++.+++++...+..++..++.+++++++++++
T Consensus 890 ~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~---~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~ 966 (1466)
T PTZ00265 890 NNVIGEKVEKTMKRRLFENILYQEISFFDQD---KHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYF 966 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999852 3778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHhhHHHHHHhcchHH
Q 000846 165 SWRLSLAALPLTLMFIVPGLLFGKLMMGVI-MK-----------------MIESYGVAGGIAEQAVSSIRTVYSYVAEHE 226 (1255)
Q Consensus 165 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~ 226 (1255)
+|.++++++++.+++ ...+.++.+... .+ ..+..++.+..++|.++|+++||+|+.|+.
T Consensus 967 ~~~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~ 1043 (1466)
T PTZ00265 967 CPIVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDY 1043 (1466)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHH
Confidence 999988766544433 333333322211 11 123356778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 227 TLIRFSNALQKTMELGIKQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNL 305 (1255)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 305 (1255)
+.++|.+..+...+...+.....++..++. .+.++..++++|+|++++..|.+++|.+++++++++....++..+...+
T Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~ 1123 (1466)
T PTZ00265 1044 FCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLK 1123 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888888888777766 5556667888999999999999999999988766665556677788888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCccccc---CCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCC
Q 000846 306 TAITEAKVAATRIFEMVDRTPAIDTDDKMGKA---LSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGS 382 (1255)
Q Consensus 306 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~---~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~s 382 (1255)
..+++++.+++|++++++.+++.+..+..+.. ++...|.|+|+||+|+||++++.++|+|+||+|+||+++||||||
T Consensus 1124 ~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~S 1203 (1466)
T PTZ00265 1124 GDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGET 1203 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCC
Confidence 99999999999999999876543211111111 123457899999999998766668999999999999999999999
Q ss_pred CCcHHHHHHHHhcccCC------------------------------------------------------CccEEEECC
Q 000846 383 GSGKSTTIALLQRFYDP------------------------------------------------------VEGEVLLDG 408 (1255)
Q Consensus 383 GsGKSTl~~~l~g~~~~------------------------------------------------------~~G~i~~~g 408 (1255)
|||||||+++|+|+|+| ++|+|++||
T Consensus 1204 GsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG 1283 (1466)
T PTZ00265 1204 GSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDG 1283 (1466)
T ss_pred CCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECC
Confidence 99999999999999999 699999999
Q ss_pred eecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHH
Q 000846 409 YKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQ 488 (1255)
Q Consensus 409 ~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 488 (1255)
+|+++++.+++|++||||+|||.||++||+|||.||.++++++++++||+.+++++||.+||+||||.|||+|.+|||||
T Consensus 1284 ~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQ 1363 (1466)
T PTZ00265 1284 VDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQ 1363 (1466)
T ss_pred EEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeC----CEEE-E
Q 000846 489 KQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIRTANLIMVLKA----GKVV-E 561 (1255)
Q Consensus 489 rqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~----G~i~-~ 561 (1255)
||||||||||+++|+|||||||||+||+++++.|+++|+++. +++|+|+||||+++++.||+|+||++ |+++ |
T Consensus 1364 kQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e 1443 (1466)
T PTZ00265 1364 KQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQA 1443 (1466)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEE
Confidence 999999999999999999999999999999999999999884 69999999999999999999999999 9954 8
Q ss_pred ecChhHHhccCCCChhHHHHHHH
Q 000846 562 SGSHNELMNRGEGGEYYQMVELQ 584 (1255)
Q Consensus 562 ~g~~~~l~~~~~~~~~~~~~~~~ 584 (1255)
+|+|+||+++ .++.|+++++.|
T Consensus 1444 ~Gth~eLl~~-~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1444 HGTHEELLSV-QDGVYKKYVKLA 1465 (1466)
T ss_pred ecCHHHHHhc-CCChHHHHHhhc
Confidence 9999999973 268999998754
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-84 Score=824.24 Aligned_cols=564 Identities=24% Similarity=0.336 Sum_probs=500.8
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 671 QWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSF 750 (1255)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 750 (1255)
+++++++.++.++.+...++++++..++....|++++.+++....... ......+.+.++++.++..++.+++.++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (708)
T TIGR01193 144 LLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM---MGTLGIISIGLIIAYIIQQILSYIQIFLL 220 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777777888888888889999999987654321 11222334444555667778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 751 SVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRL 830 (1255)
Q Consensus 751 ~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l 830 (1255)
.+.+.++..++|.++|+++++.|++||+ ++++|++++|++ |.+.+.+.+...+...+..++.+++.++++++++|.+
T Consensus 221 ~~~~~~~~~~l~~~~~~~ll~l~~~~f~--~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 297 (708)
T TIGR01193 221 NVLGQRLSIDIILSYIKHLFELPMSFFS--TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLL 297 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999998 788999999997 8999998888777777777777788888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHH
Q 000846 831 TLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWY 910 (1255)
Q Consensus 831 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1255)
++++++++|+.++..+...+..++..++..+...+..+.+.|+++|+++||+++.|+++.++|.+...+..+...+..+.
T Consensus 298 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 377 (708)
T TIGR01193 298 FLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKA 377 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877777777777777888888888999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Q 000846 911 SGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSE 990 (1255)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 990 (1255)
......+..++..+..++++|+|++++..|.+|+|.++++.++...+..++..+...+..++.+..+.+|+.++++.+++
T Consensus 378 ~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 457 (708)
T TIGR01193 378 DQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSE 457 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999987665
Q ss_pred CCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEE
Q 000846 991 IDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFM 1070 (1255)
Q Consensus 991 ~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~i 1070 (1255)
.+..... ...++..|.|+|+||+|+|+. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 458 ~~~~~~~--~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~i 533 (708)
T TIGR01193 458 FINKKKR--TELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533 (708)
T ss_pred ccccccc--cCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEE
Confidence 4322110 111234578999999999973 357999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCC
Q 000846 1071 DEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYG-KADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLS 1149 (1255)
Q Consensus 1071 dG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g-~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 1149 (1255)
||+|+++++.+++|++|+||||||+||+|||||||.++ +|+++++++++|++.++++++|.++|+||||.+||+|.+||
T Consensus 534 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LS 613 (708)
T TIGR01193 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSIS 613 (708)
T ss_pred CCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCC
Confidence 99999999999999999999999999999999999998 57899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCH
Q 000846 1150 GGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSH 1229 (1255)
Q Consensus 1150 gGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~ 1229 (1255)
|||||||+||||++++|+|||||||||+||++||+.|++.|++. +++|+|+||||+++++.||+|+||++|+++|.|+|
T Consensus 614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~ 692 (708)
T TIGR01193 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSH 692 (708)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999985 78999999999999999999999999999999999
Q ss_pred HHHHhhhcCchhHHHHhh
Q 000846 1230 NELVALSRGGAYYSLIKP 1247 (1255)
Q Consensus 1230 ~eLl~~~~~g~y~~l~~~ 1247 (1255)
+||+++ +|.|++|+++
T Consensus 693 ~~L~~~--~~~y~~l~~~ 708 (708)
T TIGR01193 693 DELLDR--NGFYASLIHN 708 (708)
T ss_pred HHHHhc--CCcHHHHhhC
Confidence 999985 8999999863
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-84 Score=740.51 Aligned_cols=552 Identities=27% Similarity=0.364 Sum_probs=497.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 688 GCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLG 767 (1255)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~ 767 (1255)
..+++++.++.....+++++..++.++.... ......+...++++.++..+..+.+.....+++.++...+|+++++
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~ 81 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLD 81 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666667777778877776664321 2233445556677778888889999999999999999999999999
Q ss_pred HHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 768 KLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYS 847 (1255)
Q Consensus 768 ~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~ 847 (1255)
++.+.++.|-+ ..|+|++.+.+...++.++.++...++.+..+.+..+..++.+++++|.-++++++++|++.++++.
T Consensus 82 ~l~~~gp~~~~--~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil 159 (559)
T COG4988 82 KLAKLGPAFIA--QKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL 159 (559)
T ss_pred HHHhCChhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987 6789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 848 RNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTA 927 (1255)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1255)
.....++..++........+.++.+.++|+.|+|+|++.+...++..+...+.++.+++..+......++..++.+++.+
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiA 239 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIA 239 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccccccc
Q 000846 928 LAYWYGGRLLTQ-ELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMR 1006 (1255)
Q Consensus 928 ~~~~~g~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1255)
++..|.+..... |.++....+.++...--+..|+-.+.+.+++-..+..+.+.++.+++.+++..+.... ....+..+
T Consensus 240 lvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~-~~~~~~~~ 318 (559)
T COG4988 240 LVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEK-AEVANEPP 318 (559)
T ss_pred HHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccc-cccccCCC
Confidence 877776666666 8999888777777777788899999999999999999999999999887654332211 11222233
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcc
Q 000846 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086 (1255)
Q Consensus 1007 g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1086 (1255)
.+|+++|++|+||.. +++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|.++++.+.||++
T Consensus 319 ~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 319 IEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred ceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 456677999999854 379999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 000846 1087 IALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNP 1166 (1255)
Q Consensus 1087 i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p 1166 (1255)
+++|||+|+||+|||||||++++|+++||+++++++.+++.+|+.. |+|+||.+||+|.+|||||+||+++|||+++++
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhhhcCchhHHHHh
Q 000846 1167 SILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIK 1246 (1255)
Q Consensus 1167 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y~~l~~ 1246 (1255)
+++|||||||+||.+||+.|++.|.+.++++|+|+||||++.+.+||+|+|||+|+++|.|+|++|.++ +|.|++|++
T Consensus 476 ~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~--~~~y~~l~~ 553 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK--QGLYANLLK 553 (559)
T ss_pred CEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc--CcHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999985 899999999
Q ss_pred hhcC
Q 000846 1247 PQGG 1250 (1255)
Q Consensus 1247 ~~~~ 1250 (1255)
+|.+
T Consensus 554 ~q~~ 557 (559)
T COG4988 554 QQEG 557 (559)
T ss_pred HHhc
Confidence 8865
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-83 Score=797.41 Aligned_cols=566 Identities=23% Similarity=0.329 Sum_probs=490.1
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 672 WRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKS-EIKSKSRTLSLFFLGVAVLNFISSLLQHYSF 750 (1255)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 750 (1255)
++++++.++.++.+.++++++++..++....+++++.+++........ ............+++++++..++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (574)
T PRK11160 5 LPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVS 84 (574)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777788888888888888888888888888865321110 0000011112234445667778888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 751 SVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRL 830 (1255)
Q Consensus 751 ~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l 830 (1255)
.+.+.++..++|.++|++++++|++||+ ++++|++++|+++|++.++..+...+..++..++.+++.++++++++|.+
T Consensus 85 ~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 162 (574)
T PRK11160 85 HDATFRVLTHLRVFTFSKLLPLSPAGLA--RYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTL 162 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhhccChHhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHH
Q 000846 831 TLVMIAVQPLVIG-SYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSW 909 (1255)
Q Consensus 831 ~l~~l~~~pl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1255)
++++++++|++++ ..+...+..+...++.++...+....+.|.++|+++||+|+.++++.++|.+..++..+...+..+
T Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 242 (574)
T PRK11160 163 ALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQAN 242 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998877776544 334444555566677777888889999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 000846 910 YSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLF-TAYVIAEAGSMTSDISKGSNAVRSVFAILDRR 988 (1255)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~ 988 (1255)
.......+..++..+..++++++|+++ ..|.++.|.+++++.+... ...++..+......+.++..+.+|+.++++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~ 321 (574)
T PRK11160 243 LTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQK 321 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 888888888888888888889999988 4788999998877665533 34567778888899999999999999999876
Q ss_pred CCCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceE
Q 000846 989 SEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068 (1255)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I 1068 (1255)
++.+...... ..+..+.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|
T Consensus 322 ~~~~~~~~~~---~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I 397 (574)
T PRK11160 322 PEVTFPTTST---AAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI 397 (574)
T ss_pred CCCCCCcccC---CCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 6532211111 11234679999999999753 3479999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCC
Q 000846 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQL 1148 (1255)
Q Consensus 1069 ~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 1148 (1255)
++||+|+++++.+++|++|+||||||++|++||+|||++++|+++|+++++|++.+++++|+.+ |+||||.+||+|.+|
T Consensus 398 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~L 476 (574)
T PRK11160 398 LLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQL 476 (574)
T ss_pred EECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecC
Q 000846 1149 SGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGS 1228 (1255)
Q Consensus 1149 SgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~ 1228 (1255)
|||||||||||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++.+||+|++|++|+++|.|+
T Consensus 477 SgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~ 556 (574)
T PRK11160 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGT 556 (574)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCC
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred HHHHHhhhcCchhHHHHhh
Q 000846 1229 HNELVALSRGGAYYSLIKP 1247 (1255)
Q Consensus 1229 ~~eLl~~~~~g~y~~l~~~ 1247 (1255)
|+||+++ +|.|++||+.
T Consensus 557 ~~~l~~~--~g~y~~l~~~ 573 (574)
T PRK11160 557 HQELLAQ--QGRYYQLKQR 573 (574)
T ss_pred HHHHHhc--CcHHHHHHhh
Confidence 9999986 8999999863
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-84 Score=823.03 Aligned_cols=564 Identities=24% Similarity=0.336 Sum_probs=498.7
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 671 QWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSF 750 (1255)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 750 (1255)
++.++++.++.+..+...++++++..++....|++.+.+++....... ......+.+.++++.++..++.+++.++.
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (710)
T TIGR03796 142 LRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR---QDWLRPLLLGMGLTALLQGVLTWLQLYYL 218 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666677777777777777788888888886653221 11122334445556677788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 751 SVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRL 830 (1255)
Q Consensus 751 ~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l 830 (1255)
...+.++..+++.++|+++++.|++||+ ++++|++++|+.+| +.+++.+...+..++..++.+++.++++++++|.+
T Consensus 219 ~~~~~~~~~~l~~~~~~~ll~l~~~~~~--~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 295 (710)
T TIGR03796 219 RRLQIKLAVGMSARFLWHILRLPVRFFA--QRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVL 295 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 78899999999988 67998888888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHH
Q 000846 831 TLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWY 910 (1255)
Q Consensus 831 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1255)
++++++.+|+.++..+...+..+...++..+...+..+.+.|++.|+++||+++.|+.+.++|.+...+..+...+..+.
T Consensus 296 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 375 (710)
T TIGR03796 296 TLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVL 375 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888777776666666666777777788889999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Q 000846 911 SGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSE 990 (1255)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 990 (1255)
......+..++..+..++++++|++++..|.+|+|.++++.++...+..++..+...+..+..+..+.+|+.++++.+++
T Consensus 376 ~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e 455 (710)
T TIGR03796 376 TQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVD 455 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888888888889999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred CCCCCC---CCcccc-ccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCc
Q 000846 991 IDPDSP---QGRDIK-RQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066 (1255)
Q Consensus 991 ~~~~~~---~~~~~~-~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G 1066 (1255)
.+.... .....+ ++..|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 534 (710)
T TIGR03796 456 PLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534 (710)
T ss_pred cccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 432210 000111 2245789999999999853 45799999999999999999999999999999999999999999
Q ss_pred eEEECCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCC
Q 000846 1067 SVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGV 1146 (1255)
Q Consensus 1067 ~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~ 1146 (1255)
+|++||+|+++++.+++|++|+||||||.+|+|||||||++++|+++++++++|++.+++++++.++|+||||.+||+|.
T Consensus 535 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~ 614 (710)
T TIGR03796 535 EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGA 614 (710)
T ss_pred EEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 000846 1147 QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQ 1226 (1255)
Q Consensus 1147 ~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~ 1226 (1255)
+||||||||||||||++++|+|||||||||+||++||+.|.+.|++ .++|+|+||||++++.+||||+||++|+|+|.
T Consensus 615 ~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~ 692 (710)
T TIGR03796 615 NLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQR 692 (710)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999987 58999999999999999999999999999999
Q ss_pred cCHHHHHhhhcCchhHHHH
Q 000846 1227 GSHNELVALSRGGAYYSLI 1245 (1255)
Q Consensus 1227 G~~~eLl~~~~~g~y~~l~ 1245 (1255)
|+|+||++. +|.|++|+
T Consensus 693 G~~~~Ll~~--~~~y~~l~ 709 (710)
T TIGR03796 693 GTHEELWAV--GGAYARLI 709 (710)
T ss_pred cCHHHHHHc--CCcHHHHh
Confidence 999999985 89999997
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-83 Score=809.76 Aligned_cols=561 Identities=35% Similarity=0.508 Sum_probs=490.1
Q ss_pred hHHHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 4 NDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGL 83 (1255)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1255)
+++++++.++. +..+++.+++.++..+.....|++.+.++|.+....+ . +........++++.++..++.+++.+
T Consensus 149 ~~~l~~~~~~~-~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (711)
T TIGR00958 149 LFRLLGLSGRD-WPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG--P--PALASAIFFMCLLSIASSVSAGLRGG 223 (711)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--H--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777543 4445566666666666666777899999997653211 1 22222333344455666778888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 84 CWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFI 163 (1255)
Q Consensus 84 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (1255)
++.+.+.++..++|.++|++++++|++||++ .++|++++|+++|++.+++.+...+..++.+++.+++.++++++
T Consensus 224 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~-----~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~ 298 (711)
T TIGR00958 224 SFNYTMARINLRIREDLFRSLLRQDLGFFDE-----NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW 298 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 67789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 000846 164 LSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGI 243 (1255)
Q Consensus 164 ~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~ 243 (1255)
++|++++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...
T Consensus 299 ~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 378 (711)
T TIGR00958 299 LSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNK 378 (711)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000846 244 KQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMV 322 (1255)
Q Consensus 244 ~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 322 (1255)
+.....+...... .+..+..++++++|++++.+|.+++|.++++..+......|+..+...+..+++++.+.+|+++++
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l 458 (711)
T TIGR00958 379 RKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYL 458 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7766655544433 333445566778899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCcc
Q 000846 323 DRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402 (1255)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G 402 (1255)
+.+++.+... ...+++..+.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|
T Consensus 459 ~~~~~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G 536 (711)
T TIGR00958 459 DRKPNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG 536 (711)
T ss_pred CCCCCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 8765533211 11222345789999999999865556899999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCC
Q 000846 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGF 482 (1255)
Q Consensus 403 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 482 (1255)
+|.+||+|+++++.+++|++|+||||||++|++||+|||.+|.++.++++++++++.++++++++++|+|+||.+||+|.
T Consensus 537 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~ 616 (711)
T TIGR00958 537 QVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGS 616 (711)
T ss_pred EEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCC
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 000846 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVES 562 (1255)
Q Consensus 483 ~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 562 (1255)
+||||||||++||||++++|+|||||||||+||+++++.+++ ....+++|+|+||||+++++.||+|++|++|+|+|+
T Consensus 617 ~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~ 694 (711)
T TIGR00958 617 QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEM 694 (711)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999998 333578999999999999999999999999999999
Q ss_pred cChhHHhccCCCChhHHH
Q 000846 563 GSHNELMNRGEGGEYYQM 580 (1255)
Q Consensus 563 g~~~~l~~~~~~~~~~~~ 580 (1255)
|+|+||+++ ++.|+++
T Consensus 695 Gt~~eL~~~--~~~y~~l 710 (711)
T TIGR00958 695 GTHKQLMED--QGCYKHL 710 (711)
T ss_pred eCHHHHHhC--CCchHhc
Confidence 999999984 5677765
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-86 Score=725.78 Aligned_cols=503 Identities=30% Similarity=0.422 Sum_probs=427.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 739 NFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVF 818 (1255)
Q Consensus 739 ~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~ 818 (1255)
+.++.-++.+++..+.+...+++--++|+|+..+++.|+- .+.+|+++.-+.+..+.+. ++...+.++...+.-+.+
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL--~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~v 348 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHL--NRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGV 348 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeee--cccccceeehhccCcchhh-HHHHHHhhcccHHHHhhh
Confidence 4566777888888899999999999999999999999997 5679999988888877776 666666666655555555
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHH
Q 000846 819 SYIVGL-VLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETL 897 (1255)
Q Consensus 819 ~~~~~~-~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~ 897 (1255)
+++..+ ..+|+..++++.+..+.+........-..+.+++......+......+++-|.+|+|-|+.|++..++|.+..
T Consensus 349 a~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAi 428 (790)
T KOG0056|consen 349 AMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAI 428 (790)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHH
Confidence 444333 3577777776655544433222111112222334444455666677899999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 898 RGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNA 977 (1255)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 977 (1255)
..+.+...+...-..+.......+..+.......++++++..+..++|+++.+..+++..-+|+..++.....+++...-
T Consensus 429 l~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiD 508 (790)
T KOG0056|consen 429 LKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFID 508 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhh
Confidence 99988777765544444444445555555555566677788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCCCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHH
Q 000846 978 VRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLL 1057 (1255)
Q Consensus 978 ~~ri~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL 1057 (1255)
.+++++++++++|..+. |..+|. ...+|.|+|+||+|.|. |++|||+||||+++||+++|+|||||+||||++++|
T Consensus 509 mEnmfdllkee~eVvd~-P~a~pl-~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlL 584 (790)
T KOG0056|consen 509 MENMFDLLKEEPEVVDL-PGAPPL-KVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLL 584 (790)
T ss_pred HHHHHHHhhcCchhhcC-CCCCCc-cccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHH
Confidence 99999999988775432 222222 23579999999999995 567899999999999999999999999999999999
Q ss_pred hcccCCCCceEEECCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHcccccc
Q 000846 1058 ERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGY 1137 (1255)
Q Consensus 1058 ~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gl 1137 (1255)
+||||.++|.|.|||+||+++..++||++||+||||.+||++||..||.|++|.+++||+.+|++.|++||-|.++|+||
T Consensus 585 fRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY 664 (790)
T KOG0056|consen 585 FRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGY 664 (790)
T ss_pred HHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEE
Q 000846 1138 DTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAV 1217 (1255)
Q Consensus 1138 dt~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~V 1217 (1255)
+|.|||+|-.||||||||+||||++|++|.|++|||||||||..||+.||.++.+.++++|.|+|||||+|+.+||.|+|
T Consensus 665 ~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILv 744 (790)
T KOG0056|consen 665 NTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILV 744 (790)
T ss_pred hhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCEEEEecCHHHHHhhhcCchhHHHHhhhc
Q 000846 1218 IKNGRVVEQGSHNELVALSRGGAYYSLIKPQG 1249 (1255)
Q Consensus 1218 l~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~ 1249 (1255)
+++|+|+|.|+|+||+++ .+|.|++||+.|+
T Consensus 745 i~~G~IvErG~HeeLl~r-dgG~Ya~MWq~qq 775 (790)
T KOG0056|consen 745 ISNGRIVERGRHEELLKR-DGGAYADMWQAQQ 775 (790)
T ss_pred EeCCeEeecCcHHHHHhc-cCCcHHHHHHHHH
Confidence 999999999999999986 6999999997553
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-83 Score=792.30 Aligned_cols=562 Identities=33% Similarity=0.538 Sum_probs=497.5
Q ss_pred chHHHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 3 GNDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEG 82 (1255)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1255)
.+++++++.. ++ .+.+++++.++..+.....+++++.++|.+... . .....+...++++.++..++.++..
T Consensus 3 ~~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~--~~~~~~~~~~~~~~~~~~v~~~~~~ 73 (567)
T COG1132 3 LLRRLLKYLK--YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD----L--GELLELLLLLLLLALLGGVLRALQS 73 (567)
T ss_pred hHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----H--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666665 44 555666666666666666668888888876510 1 2333444445555566777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 83 LCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSF 162 (1255)
Q Consensus 83 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (1255)
++..+.+.+...++|.+++++++++|+++|++ +++|++++|+++|++.++..+.+....+...+..+++.+++++
T Consensus 74 ~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-----~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (567)
T COG1132 74 YLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK-----AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLF 148 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCc-----CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999997 5677999999999999999999886666667888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 000846 163 ILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELG 242 (1255)
Q Consensus 163 ~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~ 242 (1255)
..+|.++++++...|++.++..++.++.++...+.++..++.++.+.|.++|+++||+|+.++.+.+++.+..++..+..
T Consensus 149 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~ 228 (567)
T COG1132 149 SLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRAN 228 (567)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888778899999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 243 IKQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEM 321 (1255)
Q Consensus 243 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 321 (1255)
.+.....+...+.. .+..+....++++|++++..+.++.|.+.+++.+......|+..+...+..++.+..+++|++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~ 308 (567)
T COG1132 229 LRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFEL 308 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777776555 55567778888999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCc
Q 000846 322 VDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVE 401 (1255)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~ 401 (1255)
++.+++...... ......++|+|+||+|+|++ ++++|+|+||+++|||++||||||||||||++++|.|+|+|++
T Consensus 309 l~~~~~~~~~~~---~~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~ 383 (567)
T COG1132 309 LDEEPEVEDPPD---PLKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS 383 (567)
T ss_pred HcCCccccCCCC---CCCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence 998665332211 12334578999999999974 3579999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCC
Q 000846 402 GEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLG 481 (1255)
Q Consensus 402 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 481 (1255)
|+|++||+|+++++..++|++|++|||||+||++||+|||.+|+++++++++++||+.++++|++.++|+||||.+||+|
T Consensus 384 G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G 463 (567)
T COG1132 384 GEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERG 463 (567)
T ss_pred CeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEE
Q 000846 482 FQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVE 561 (1255)
Q Consensus 482 ~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 561 (1255)
.+||||||||+|||||+++||+|||||||||+||+++|+.++++++++.++||+|+||||++++++||+|+||++|+|+|
T Consensus 464 ~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e 543 (567)
T COG1132 464 VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVE 543 (567)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred ecChhHHhccCCCChhHHHHHHHh
Q 000846 562 SGSHNELMNRGEGGEYYQMVELQQ 585 (1255)
Q Consensus 562 ~g~~~~l~~~~~~~~~~~~~~~~~ 585 (1255)
.|+|+||+++ +|.|+++++.|.
T Consensus 544 ~G~h~eLl~~--~g~y~~l~~~~~ 565 (567)
T COG1132 544 RGTHEELLAK--GGLYARLYQAQG 565 (567)
T ss_pred ecCHHHHHHc--CCHHHHHHHHhh
Confidence 9999999985 799999998764
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-83 Score=810.68 Aligned_cols=557 Identities=27% Similarity=0.389 Sum_probs=493.9
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 673 RLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSV 752 (1255)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 752 (1255)
+++++.++.+..+...++++++..++....|++++.+++....... ......+.+.++++.++..++.+++.++..+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 137 WFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA---FETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777777777778788888888888988886653211 1112223334445566677888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 753 MGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTL 832 (1255)
Q Consensus 753 ~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l 832 (1255)
.+.++..++|.++|+|++++|++| + ++++|++++|+ +|++.+++.+...+...+..++.+++.++++++++|.+++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 289 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVW 289 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999998 4 57899999999 8999999999888877777777788888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 000846 833 VMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSG 912 (1255)
Q Consensus 833 ~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1255)
+.++.+|+.++..+...+..++..++..+...+..+.+.|++.|+++||+|+.|+.+.++|.+..++..+...+..+...
T Consensus 290 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR03375 290 VPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSN 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887777777777777788888888999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Q 000846 913 IGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEID 992 (1255)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 992 (1255)
....+..++..+..++++++|++++..|.+|+|+++++..+...+..++..+...+.++..+..+.+|+.++++.+++.+
T Consensus 370 ~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~ 449 (694)
T TIGR03375 370 LATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERP 449 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 88888888888999999999999999999999999999999999999999999999999999999999999998876533
Q ss_pred CCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECC
Q 000846 993 PDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDE 1072 (1255)
Q Consensus 993 ~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG 1072 (1255)
..... ....+..|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 450 ~~~~~--~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg 526 (694)
T TIGR03375 450 EGTRF--LHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDG 526 (694)
T ss_pred CCCCC--CCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 21110 1111245789999999999743 45799999999999999999999999999999999999999999999999
Q ss_pred eecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHH
Q 000846 1073 QDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQ 1152 (1255)
Q Consensus 1073 ~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 1152 (1255)
+|+++++++++|++|+||||||++|+|||||||++++|+++++++++|++.+++++++.++|+||||.+||+|.+|||||
T Consensus 527 ~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQ 606 (694)
T TIGR03375 527 VDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQ 606 (694)
T ss_pred EEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHH
Q 000846 1153 KQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1153 kQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
|||||||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||+++++.||+|+||++|+++|.|+|+||
T Consensus 607 rQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eL 686 (694)
T TIGR03375 607 RQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQV 686 (694)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred HhhhcCc
Q 000846 1233 VALSRGG 1239 (1255)
Q Consensus 1233 l~~~~~g 1239 (1255)
++..+.|
T Consensus 687 l~~~~~~ 693 (694)
T TIGR03375 687 LEALRKG 693 (694)
T ss_pred HHHhhcC
Confidence 9864444
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-82 Score=794.36 Aligned_cols=567 Identities=32% Similarity=0.492 Sum_probs=497.6
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 672 WRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFS 751 (1255)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 751 (1255)
+.++++.++.++.+++.+++.++..+.....+++++.+++........ .....+.+.+++++++..+..++..++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 90 (582)
T PRK11176 14 RRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR---SVLKWMPLVVIGLMILRGITSFISSYCIS 90 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666666666666666666777777777765532111 11122233344566677788888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 752 VMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLT 831 (1255)
Q Consensus 752 ~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~ 831 (1255)
+.+.++...+|.++++++++.|.++|+ +..+|++++|+++|++.+.+.+...+..++..++.+++.++++++++|.++
T Consensus 91 ~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 168 (582)
T PRK11176 91 WVSGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLS 168 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHH
Q 000846 832 LVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYS 911 (1255)
Q Consensus 832 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 911 (1255)
+++++++|+.++..+...+..++..++..+...+....+.|.++|+++||+|+.++.+.++|.+..+...+...+..+..
T Consensus 169 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T PRK11176 169 LILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSAS 248 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888877777666666677677777777888899999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Q 000846 912 GIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEI 991 (1255)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~ 991 (1255)
.....+..++..+...+++++|++++..|.+++|++++++.+......++..+...+..+.++..+.+|+.++++.+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 328 (582)
T PRK11176 249 SISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEK 328 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 88888888888888889999999999999999999999888888889999999999999999999999999999865442
Q ss_pred CCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEEC
Q 000846 992 DPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMD 1071 (1255)
Q Consensus 992 ~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~id 1071 (1255)
+.... . ..+..+.|+|+||+|+||+. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 329 ~~~~~---~-~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 403 (582)
T PRK11176 329 DEGKR---V-IERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLD 403 (582)
T ss_pred CCCCc---C-CCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEEC
Confidence 21111 1 11234679999999999753 4579999999999999999999999999999999999999999999999
Q ss_pred CeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCCh
Q 000846 1072 EQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKAD-ARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSG 1150 (1255)
Q Consensus 1072 G~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~-~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 1150 (1255)
|+|+++++.+++|++|+||||||++|+|||||||++|+++ .+|++++++++.+++++++.++|+||||.+||+|.+|||
T Consensus 404 g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSG 483 (582)
T PRK11176 404 GHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSG 483 (582)
T ss_pred CEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCH
Confidence 9999999999999999999999999999999999999764 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHH
Q 000846 1151 GQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHN 1230 (1255)
Q Consensus 1151 GQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~ 1230 (1255)
||||||+|||||+++|+|||||||||+||++||+.|.+.|.+..+++|+|+||||+++++.||+|++|++|+++|.|+|+
T Consensus 484 GqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~ 563 (582)
T PRK11176 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHA 563 (582)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHhhhcCchhHHHHhhhcC
Q 000846 1231 ELVALSRGGAYYSLIKPQGG 1250 (1255)
Q Consensus 1231 eLl~~~~~g~y~~l~~~~~~ 1250 (1255)
+|+++ ++.|++|++.|.+
T Consensus 564 ~l~~~--~~~y~~l~~~~~~ 581 (582)
T PRK11176 564 ELLAQ--NGVYAQLHKMQFG 581 (582)
T ss_pred HHHhC--CChHHHHHHHHhc
Confidence 99986 7999999987754
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-82 Score=788.85 Aligned_cols=567 Identities=25% Similarity=0.332 Sum_probs=482.8
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 671 QWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSF 750 (1255)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 750 (1255)
.+++.++..+.++.+++.++++++..++....|++++.+++......... ......+.+.++++.++..++.++..+..
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (592)
T PRK10790 11 LKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLP-LGLVAGLAAAYVGLQLLAAGLHYAQSLLF 89 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666777777788888888888888999999988765321111 11111122334445556677788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 751 SVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRL 830 (1255)
Q Consensus 751 ~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l 830 (1255)
...+.++..++|.++|+++++.|.+||+ ++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (592)
T PRK10790 90 NRAAVGVVQQLRTDVMDAALRQPLSAFD--TQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRM 167 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 67899999999999999999999999999999988899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHH
Q 000846 831 TLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWY 910 (1255)
Q Consensus 831 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1255)
++++++.+|+.++.........+...++..+...+....+.|.+.|+++||+|+.++++.++|.+..++..+...+....
T Consensus 168 ~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (592)
T PRK10790 168 ALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRL 247 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888887666665555556666666677778888999999999999999999999999999888877777666655
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Q 000846 911 SGIG-LFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRS 989 (1255)
Q Consensus 911 ~~~~-~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 989 (1255)
.... ..+..++..+...+++++++. +..|.+++|.++++..+...+..++..+...+..++++..+.+|+.++++.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 326 (592)
T PRK10790 248 DGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPR 326 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5433 333444444333333333333 57899999999999999999999999999999999999999999999998654
Q ss_pred CCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEE
Q 000846 990 EIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVF 1069 (1255)
Q Consensus 990 ~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~ 1069 (1255)
+..... . .+...++|+|+||+|+||. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 327 ~~~~~~----~-~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 399 (592)
T PRK10790 327 QQYGND----D-RPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 (592)
T ss_pred ccCCCC----c-cCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 321111 1 1123467999999999974 35799999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCC
Q 000846 1070 MDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLS 1149 (1255)
Q Consensus 1070 idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 1149 (1255)
+||+|+++++.+++|++|+||||||.+|+|||||||++++ +++|++++++++.+++++++.++|+||||.+||+|.+||
T Consensus 400 idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LS 478 (592)
T PRK10790 400 LDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478 (592)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCC
Confidence 9999999999999999999999999999999999999998 689999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCH
Q 000846 1150 GGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSH 1229 (1255)
Q Consensus 1150 gGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~ 1229 (1255)
|||||||||||||+++|+|||||||||+||++||+.|++.|++..++||+|+||||++++..||+|++|++|+++|.|+|
T Consensus 479 GGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~ 558 (592)
T PRK10790 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTH 558 (592)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHhhhcCchhHHHHhhhcCC
Q 000846 1230 NELVALSRGGAYYSLIKPQGGS 1251 (1255)
Q Consensus 1230 ~eLl~~~~~g~y~~l~~~~~~~ 1251 (1255)
+||+++ ++.|++|++.|..+
T Consensus 559 ~~L~~~--~~~y~~l~~~~~~~ 578 (592)
T PRK10790 559 QQLLAA--QGRYWQMYQLQLAG 578 (592)
T ss_pred HHHHhC--CCHHHHHHHHHhhh
Confidence 999986 89999999987543
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-81 Score=799.43 Aligned_cols=562 Identities=29% Similarity=0.370 Sum_probs=489.9
Q ss_pred hHHHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 4 NDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGL 83 (1255)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1255)
+++++++.-+..+..++..++++++..+.....|++++.++|.+..... . ..++.+++.++++.++.+++.+++.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~--~~l~~~~~~~~~~~~~~~~~~~~~~~ 198 (686)
T TIGR03797 123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD--R--SLLVQIALALLAAAVGAAAFQLAQSL 198 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--h--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666322223333444555555555555556788999997653211 1 23344444555566667788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 84 CWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFI 163 (1255)
Q Consensus 84 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (1255)
+..+.+.++..++|..+|++++++|+.||++ .++|++++|++ |++.+++.+...+...+.+++.++++++++++
T Consensus 199 ~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~-----~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (686)
T TIGR03797 199 AVLRLETRMDASLQAAVWDRLLRLPVSFFRQ-----YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFY 272 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-----CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 77889999997 89999999999888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 000846 164 LSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGI 243 (1255)
Q Consensus 164 ~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~ 243 (1255)
++|++++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||+++.|+.+.++|.+..++..+...
T Consensus 273 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 352 (686)
T TIGR03797 273 YSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLEL 352 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888889999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000846 244 KQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMV 322 (1255)
Q Consensus 244 ~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 322 (1255)
+.....++...+. .+..+..++++|+|++++.+|.+|.|.++++..+......|+..+...+..+++++.+.+|+.+++
T Consensus 353 ~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 432 (686)
T TIGR03797 353 SAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPIL 432 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888777665554 444566677889999999999999999999999989999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCcc
Q 000846 323 DRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402 (1255)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G 402 (1255)
+.+++.+... ..+.+..+.|+++||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|
T Consensus 433 ~~~~e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 508 (686)
T TIGR03797 433 EALPEVDEAK---TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508 (686)
T ss_pred cCCcccccCc---CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 8765432111 1122345689999999999743 35799999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCC
Q 000846 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGF 482 (1255)
Q Consensus 403 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 482 (1255)
+|++||+|+++++.+++|++||||||||++|++||+|||.++++ .++++++++++.+++++++.++|+|+||.+||+|.
T Consensus 509 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~ 587 (686)
T TIGR03797 509 SVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGG 587 (686)
T ss_pred EEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCC
Confidence 99999999999999999999999999999999999999999988 89999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 000846 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVES 562 (1255)
Q Consensus 483 ~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 562 (1255)
+||||||||++||||++++|+|||||||||+||+++++.+.+.|+++ ++|+|+||||+++++.||+|++|++|+++++
T Consensus 588 ~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~ 665 (686)
T TIGR03797 588 TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQ 665 (686)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999886 6899999999999999999999999999999
Q ss_pred cChhHHhccCCCChhHHHHHHH
Q 000846 563 GSHNELMNRGEGGEYYQMVELQ 584 (1255)
Q Consensus 563 g~~~~l~~~~~~~~~~~~~~~~ 584 (1255)
|+|+||+++ ++.|+++++.|
T Consensus 666 G~~~~Ll~~--~~~y~~l~~~q 685 (686)
T TIGR03797 666 GTYDELMAR--EGLFAQLARRQ 685 (686)
T ss_pred CCHHHHHhC--CcHHHHHHHhc
Confidence 999999984 68999988643
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-81 Score=798.76 Aligned_cols=567 Identities=27% Similarity=0.389 Sum_probs=501.6
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 671 QWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSF 750 (1255)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 750 (1255)
+++++++.++.+..+...++++++..++....|+++..+++....... ......+.+.++++.++..++.+++.+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~---~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG---LSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445566666667777777777777888888888887653211 12223344555666677888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 751 SVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRL 830 (1255)
Q Consensus 751 ~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l 830 (1255)
...+.++..++|.++|++++++|++||+ ++++|++++|+ +|++.+++++...+..++..++.+++.++++++++|.+
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~--~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 280 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFE--SRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTL 280 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcC--CCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 78899999999 79999999988877777777776777788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHH
Q 000846 831 TLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWY 910 (1255)
Q Consensus 831 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1255)
++++++++|+.++..+...+..++..++..+...+....+.|++.|+++||++|.|+.+.++|.+..++..+...+..+.
T Consensus 281 ~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 360 (694)
T TIGR01846 281 TGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNL 360 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888777766666666666677777788889999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Q 000846 911 SGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSE 990 (1255)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 990 (1255)
......+.+++..+..++++|+|++++..|.+|+|+++++.++...+..++..+...+..++.+..+.+|+.++++.+++
T Consensus 361 ~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 440 (694)
T TIGR01846 361 GNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTE 440 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88888888888899999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred CCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEE
Q 000846 991 IDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFM 1070 (1255)
Q Consensus 991 ~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~i 1070 (1255)
.+... ... .....+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 441 ~~~~~--~~~-~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~i 516 (694)
T TIGR01846 441 PRSAG--LAA-LPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLV 516 (694)
T ss_pred ccCCC--CCC-CCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 43211 111 11235789999999999743 356999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCCh
Q 000846 1071 DEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSG 1150 (1255)
Q Consensus 1071 dG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 1150 (1255)
||+|+++++.+++|++|+||||||.+|++||||||++++|+++++++++|++.+++++++.++|+||||.+||+|.+|||
T Consensus 517 dg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSg 596 (694)
T TIGR01846 517 DGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSG 596 (694)
T ss_pred CCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHH
Q 000846 1151 GQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHN 1230 (1255)
Q Consensus 1151 GQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~ 1230 (1255)
|||||+|||||++++|+|||||||||+||+++|+.+.+.|++..+++|+|+||||++++..||+|+||++|+++|.|+|+
T Consensus 597 Gq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~ 676 (694)
T TIGR01846 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHE 676 (694)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHhhhcCchhHHHHhhhc
Q 000846 1231 ELVALSRGGAYYSLIKPQG 1249 (1255)
Q Consensus 1231 eLl~~~~~g~y~~l~~~~~ 1249 (1255)
||+++ +|.|++|++.|.
T Consensus 677 ~l~~~--~~~y~~l~~~~~ 693 (694)
T TIGR01846 677 ELLAL--QGLYARLWQQQS 693 (694)
T ss_pred HHHHc--CChHHHHHHhhc
Confidence 99986 899999998663
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-82 Score=715.31 Aligned_cols=551 Identities=26% Similarity=0.400 Sum_probs=462.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 689 CIASIGSGAVQPINAYCVGSLISIYFRTDKS-EIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLG 767 (1255)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~ 767 (1255)
+++.+.+.......|.++...++.....+.. ............|.++.+...++..++.+.+.++.+++.+..-.++|+
T Consensus 36 l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~ 115 (591)
T KOG0057|consen 36 LGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFR 115 (591)
T ss_pred HHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344567777888888888766422111 112223334556777888899999999999999999999999999999
Q ss_pred HHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 768 KLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYI-VGLVLSWRLTLVMIAVQPLVIGSYY 846 (1255)
Q Consensus 768 ~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~-~~~~~~~~l~l~~l~~~pl~~~~~~ 846 (1255)
+++.++.+||. +..+|.+.+.+..-...+...+.-.+..++..++.+..... +..-.++..+++.+..+.....+.+
T Consensus 116 ~~~~ld~~~~~--~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti 193 (591)
T KOG0057|consen 116 HLMSLDLSFFL--SRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTI 193 (591)
T ss_pred HHHhhhHHhhc--CCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEE
Confidence 99999999997 67799999999999998888888887777777665544443 2233455555555544444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 847 SRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTAST 926 (1255)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1255)
.........+++...+.......+.|++.|.++||+||.|++..++|...+.+..+...+.....++....-..+.....
T Consensus 194 ~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~ 273 (591)
T KOG0057|consen 194 VVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVAL 273 (591)
T ss_pred eehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHH
Confidence 33333444556677777888899999999999999999999999999999999998888877766666666666666677
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcccccccc
Q 000846 927 ALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMR 1006 (1255)
Q Consensus 927 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1255)
+.+.+.|..-+..+.++++++............++..+.....++.++..-.+.++...+........ +.+....+
T Consensus 274 ~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~----~~~i~~~~ 349 (591)
T KOG0057|consen 274 TFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA----ALPIELFG 349 (591)
T ss_pred HHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc----cCCcccCC
Confidence 77777788778899999999999999999999999999999999988888887777665433222111 11112256
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcc
Q 000846 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086 (1255)
Q Consensus 1007 g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1086 (1255)
+.|+|+||+|.|+ |++++|+++||+|++||||||||+|||||||++++|+||+| ++|+|+|||+||++++++.+|+.
T Consensus 350 ~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~ 426 (591)
T KOG0057|consen 350 GSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQS 426 (591)
T ss_pred CcEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhh
Confidence 7899999999996 45679999999999999999999999999999999999999 99999999999999999999999
Q ss_pred eEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 000846 1087 IALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNP 1166 (1255)
Q Consensus 1087 i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p 1166 (1255)
||+||||.+||++||.+||.||.|.+++||+.++|+.+++||.+.++|+||+|.|||+|..||||||||++||||++++|
T Consensus 427 Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda 506 (591)
T KOG0057|consen 427 IGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA 506 (591)
T ss_pred eeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhhhcCchhHHHHh
Q 000846 1167 SILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIK 1246 (1255)
Q Consensus 1167 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y~~l~~ 1246 (1255)
+|+++|||||+||.+||+.|.+.|.+...++|+|+|+||++++++||+|+||++|+|+|.|+|+||++. .+.|+++|.
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~--s~~~~~~w~ 584 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAP--SELYADLWT 584 (591)
T ss_pred CeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhh--hhHHHHHhc
Confidence 999999999999999999999999998999999999999999999999999999999999999999984 888999997
Q ss_pred hhcC
Q 000846 1247 PQGG 1250 (1255)
Q Consensus 1247 ~~~~ 1250 (1255)
.|..
T Consensus 585 ~~~~ 588 (591)
T KOG0057|consen 585 TQTS 588 (591)
T ss_pred cccc
Confidence 7653
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-81 Score=773.86 Aligned_cols=568 Identities=22% Similarity=0.301 Sum_probs=482.7
Q ss_pred CCchHHHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCC-CcccchHHHHHHHHHHHHHHHHHHHH
Q 000846 1 MGGNDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSS-SLSNDTVDKYTLRLLYVAIGVGLSAF 79 (1255)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1255)
|..++++++|.+++++ .++++++++++..+.....++++++++|........ ... .........+++++++..++.+
T Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (574)
T PRK11160 1 MRALLPFLKLYKRHWF-MLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYS-FNYMLPAAGVRGAAIGRTAGRY 78 (574)
T ss_pred CchhHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhh-HHHHhHHHHHHHHHHHHHHHHH
Confidence 4456678888766544 345666666666655556668889999864311110 000 0011112233445567778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 80 VEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLL 159 (1255)
Q Consensus 80 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~ 159 (1255)
++.++.++.+.++..++|.++|++++++|+.+|++ .++|++++|+++|++.+++++...++.++.+++.+++.++
T Consensus 79 ~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-----~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (574)
T PRK11160 79 GERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLAR-----YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTI 153 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhcc-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997 7788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHH
Q 000846 160 FSFILSWRLSLAALPLTLMFIV-PGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKT 238 (1255)
Q Consensus 160 ~~~~~~~~l~l~~l~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~ 238 (1255)
++++++|++++++++++|++++ +..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++.
T Consensus 154 ~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 233 (574)
T PRK11160 154 GLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQW 233 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHH
Confidence 9999999999998888877654 346677777888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000846 239 MELGIKQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMG-GLSVLGALPNLTAITEAKVAAT 316 (1255)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~ 316 (1255)
.+...+..+..+...++. .+..+..++++++|+++ .+|.++.|.+++++.+.... ..++..+...+..++++..+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ 312 (574)
T PRK11160 234 LAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASAR 312 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888877766655 44455566778889888 47889999988876655443 3466666667888999999999
Q ss_pred HHHHHhcCCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcc
Q 000846 317 RIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 317 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~ 396 (1255)
|+.++++.+++.+.... ....+..+.|+++||+|+|++. ++++|+|+||+++|||++|||||||||||||+++|+|+
T Consensus 313 ri~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 313 RINEITEQKPEVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred HHHHHHhCCCCCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 99999987665321111 1112235689999999999753 24699999999999999999999999999999999999
Q ss_pred cCCCccEEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccch
Q 000846 397 YDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQ 476 (1255)
Q Consensus 397 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 476 (1255)
|+|++|+|++||+++++++.+++|++|+||||||++|++||+|||.++.++.+++++.++++.+++++++.+ |+|+||.
T Consensus 390 ~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~ 468 (574)
T PRK11160 390 WDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAW 468 (574)
T ss_pred CCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCch
Confidence 999999999999999999999999999999999999999999999999988999999999999999999999 9999999
Q ss_pred hcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeC
Q 000846 477 VGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKA 556 (1255)
Q Consensus 477 ~~~~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~ 556 (1255)
+||+|.+||||||||++||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++
T Consensus 469 vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~ 548 (574)
T PRK11160 469 LGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDN 548 (574)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred CEEEEecChhHHhccCCCChhHHHHH
Q 000846 557 GKVVESGSHNELMNRGEGGEYYQMVE 582 (1255)
Q Consensus 557 G~i~~~g~~~~l~~~~~~~~~~~~~~ 582 (1255)
|++++.|+|+||+++ ++.|+++++
T Consensus 549 G~i~~~g~~~~l~~~--~g~y~~l~~ 572 (574)
T PRK11160 549 GQIIEQGTHQELLAQ--QGRYYQLKQ 572 (574)
T ss_pred CeEEEeCCHHHHHhc--CcHHHHHHh
Confidence 999999999999984 689998875
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-81 Score=705.43 Aligned_cols=559 Identities=23% Similarity=0.294 Sum_probs=463.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 679 MPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLT 758 (1255)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 758 (1255)
++.|+.++++++.+++..+.......+.++++..--..... ..-+........=++++...+..+...+....+..++.
T Consensus 12 ~~~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~-~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL 90 (573)
T COG4987 12 KRHKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLA-YIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVL 90 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33566677777776666555544444445554322111110 00000111122224566777888888888888999999
Q ss_pred HHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 759 KRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQ 838 (1255)
Q Consensus 759 ~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~ 838 (1255)
..+|.++|+++...+..-.+ ...+|++++|+..|++.+++.+-..+...+..+....+..+...+++|.+++.+...+
T Consensus 91 ~~lRv~~f~kl~p~sp~~~~--r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~l 168 (573)
T COG4987 91 SALRVRLFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLIL 168 (573)
T ss_pred HHHHHHHHHhhccCChHHHH--hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999888776 6679999999999999999999999999999888887777777788988887765443
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 000846 839 P-LVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFS 917 (1255)
Q Consensus 839 p-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 917 (1255)
. ++++......++-++..++.+...+...+.+.|.+.|....+.||+++.+.+.+....+.+.+...+.+.+..+..++
T Consensus 169 l~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~ 248 (573)
T COG4987 169 LLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAI 248 (573)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 344555666666677777778888888999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcccCCCCCCCC
Q 000846 918 SQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAG-SMTSDISKGSNAVRSVFAILDRRSEIDPDSP 996 (1255)
Q Consensus 918 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~ 996 (1255)
.+++..+..+..+.+.+..+..|..+......+++.+.....++..+. ....+..+...+++|+.++.+.+++...+.+
T Consensus 249 ~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~ 328 (573)
T COG4987 249 LLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDE 328 (573)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCcc
Confidence 888888777744444444556676665444444444444444444444 5667889999999999999988877654311
Q ss_pred CCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecC
Q 000846 997 QGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIR 1076 (1255)
Q Consensus 997 ~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~ 1076 (1255)
+ .+.+.. .++++||+|+||+. ++++|+|+||++++||||||+|||||||||++++|.|.|+|++|+|.++|.|++
T Consensus 329 ~---~~~~~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~ 403 (573)
T COG4987 329 Q---TATTGQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIA 403 (573)
T ss_pred c---cCCccc-eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChh
Confidence 1 111112 79999999999965 567999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHH
Q 000846 1077 NYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRI 1156 (1255)
Q Consensus 1077 ~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrl 1156 (1255)
.++.+.+|+.|++++|.++||++|+|+||.+++|++||||+|++++++++++++++.|+||||++||+|.+|||||||||
T Consensus 404 ~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRL 483 (573)
T COG4987 404 SLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRL 483 (573)
T ss_pred hCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhhh
Q 000846 1157 ALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALS 1236 (1255)
Q Consensus 1157 alARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~~ 1236 (1255)
||||+||+|.|++||||||.+||++||+.|.+.|.+..+|||+|+||||+..++.||||+|||+|+++|+|+|.+|+++
T Consensus 484 AlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~- 562 (573)
T COG4987 484 ALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN- 562 (573)
T ss_pred HHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred cCchhHHHHhh
Q 000846 1237 RGGAYYSLIKP 1247 (1255)
Q Consensus 1237 ~~g~y~~l~~~ 1247 (1255)
+|.|++|++.
T Consensus 563 -~g~~~~l~q~ 572 (573)
T COG4987 563 -NGRYKRLYQL 572 (573)
T ss_pred -ccHHHHHhcc
Confidence 8999999864
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-81 Score=795.08 Aligned_cols=562 Identities=25% Similarity=0.368 Sum_probs=487.8
Q ss_pred hHHHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 4 NDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGL 83 (1255)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1255)
+++++++..++++ .++..++++++..+.....+++++.++|....... . ..+..+...++++.++..++.+++.+
T Consensus 144 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~--~--~~l~~~~~~~~~~~~~~~~~~~~~~~ 218 (708)
T TIGR01193 144 LLKFIPLITRQKK-LIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM--M--GTLGIISIGLIIAYIIQQILSYIQIF 218 (708)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--h--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666654433 33344444555555555556888999997653211 1 23333344444555667788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 84 CWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFI 163 (1255)
Q Consensus 84 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (1255)
+..+.+.++..++|.+++++++++|+.||++ .++|++++|++ |++.+++++...+...+.+++.++++++++++
T Consensus 219 ~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~-----~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 292 (708)
T TIGR01193 219 LLNVLGQRLSIDIILSYIKHLFELPMSFFST-----RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVR 292 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-----CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 77889999997 99999999998888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 000846 164 LSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGI 243 (1255)
Q Consensus 164 ~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~ 243 (1255)
++|++++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+++.|+.+.++|.+...+..+...
T Consensus 293 ~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 372 (708)
T TIGR01193 293 QNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSF 372 (708)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000846 244 KQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMV 322 (1255)
Q Consensus 244 ~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 322 (1255)
+.....+....+. .+..+..++++|+|++++.+|.+|+|.++++..+......|+.++...+..++.++.+.+|+.+++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 452 (708)
T TIGR01193 373 KYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVY 452 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777766655444 333455677889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCcc
Q 000846 323 DRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402 (1255)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G 402 (1255)
+.+++.+... .....++..+.|+++||+|+|+. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|
T Consensus 453 ~~~~e~~~~~-~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G 529 (708)
T TIGR01193 453 LVDSEFINKK-KRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSG 529 (708)
T ss_pred cCCCcccccc-cccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCc
Confidence 8765532211 10112334578999999999973 34799999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccC-CCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCC
Q 000846 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFG-KDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLG 481 (1255)
Q Consensus 403 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 481 (1255)
+|++||+|+++++.+++|++||||||+|+||++||+|||.++ .++.++++++++++.+++++++.++|+|+||.+||+|
T Consensus 530 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G 609 (708)
T TIGR01193 530 EILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEG 609 (708)
T ss_pred EEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCC
Confidence 999999999999999999999999999999999999999998 4778999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEE
Q 000846 482 FQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVE 561 (1255)
Q Consensus 482 ~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 561 (1255)
.+|||||||||+||||++++|+|||||||||+||+++++.+.+.|++. +++|+|+||||+++++.||+|++|++|++++
T Consensus 610 ~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~ 688 (708)
T TIGR01193 610 SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIE 688 (708)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999875 6899999999999999999999999999999
Q ss_pred ecChhHHhccCCCChhHHHHH
Q 000846 562 SGSHNELMNRGEGGEYYQMVE 582 (1255)
Q Consensus 562 ~g~~~~l~~~~~~~~~~~~~~ 582 (1255)
.|+|+||+++ .+.|+++++
T Consensus 689 ~G~~~~L~~~--~~~y~~l~~ 707 (708)
T TIGR01193 689 QGSHDELLDR--NGFYASLIH 707 (708)
T ss_pred ECCHHHHHhc--CCcHHHHhh
Confidence 9999999984 678888764
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-80 Score=792.95 Aligned_cols=561 Identities=25% Similarity=0.371 Sum_probs=484.2
Q ss_pred HHHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 5 DGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLC 84 (1255)
Q Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1255)
+.++++..++++ .+...++++++..+.....|++++.++|....... . ..+..+...++++.++.+++.+++.++
T Consensus 143 ~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~--~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (710)
T TIGR03796 143 RALWRRLRGSRG-ALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR--Q--DWLRPLLLGMGLTALLQGVLTWLQLYY 217 (710)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--h--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544332 22333444444444444445788889987543211 1 223333444445556677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 85 WTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFIL 164 (1255)
Q Consensus 85 ~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (1255)
..+.+.++..++|.++|++++++|+++|++ .++|++++|+++| +.+++++...+...+.+++.+++++++++++
T Consensus 218 ~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~-----~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 291 (710)
T TIGR03796 218 LRRLQIKLAVGMSARFLWHILRLPVRFFAQ-----RHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLY 291 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-----CcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997 6777999999988 7899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 000846 165 SWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIK 244 (1255)
Q Consensus 165 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~ 244 (1255)
+|++++++++.+|+++++..++.+...+..++.++..++..+.+.|.++|+++||++++|+.+.++|.+...+..+...+
T Consensus 292 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 371 (710)
T TIGR03796 292 DPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQE 371 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998889999999998889999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000846 245 QGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVD 323 (1255)
Q Consensus 245 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 323 (1255)
.....++...+. .+..+..++++|+|++++.+|.+++|.++++..+......|+..+...+..+++++.+.+|+.++++
T Consensus 372 ~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~ 451 (710)
T TIGR03796 372 LGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLR 451 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 777776665544 4445566778899999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCc---c-cccC-CCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 000846 324 RTPAIDTDDK---M-GKAL-SYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 324 ~~~~~~~~~~---~-~~~~-~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 398 (1255)
.+++.+.... . .... +...+.|+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+
T Consensus 452 ~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 452 NPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred CCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7654322110 0 0111 2345789999999999853 3579999999999999999999999999999999999999
Q ss_pred CCccEEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhc
Q 000846 399 PVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVG 478 (1255)
Q Consensus 399 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~ 478 (1255)
|++|+|.+||+|+++++.+++|++|+||||+|++|++||+|||.++.++.++++++++++.+++++++.++|+|+||.+|
T Consensus 531 p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~ 610 (710)
T TIGR03796 531 PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELA 610 (710)
T ss_pred CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceec
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCE
Q 000846 479 QLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGK 558 (1255)
Q Consensus 479 ~~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~ 558 (1255)
|+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.|++ .++|+|+||||+++++.||+|++|++|+
T Consensus 611 e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~ 688 (710)
T TIGR03796 611 EGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGK 688 (710)
T ss_pred cCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCE
Confidence 99999999999999999999999999999999999999999999999986 5899999999999999999999999999
Q ss_pred EEEecChhHHhccCCCChhHHHH
Q 000846 559 VVESGSHNELMNRGEGGEYYQMV 581 (1255)
Q Consensus 559 i~~~g~~~~l~~~~~~~~~~~~~ 581 (1255)
+++.|+|+||+++ ++.|++++
T Consensus 689 i~~~G~~~~Ll~~--~~~y~~l~ 709 (710)
T TIGR03796 689 VVQRGTHEELWAV--GGAYARLI 709 (710)
T ss_pred EEEecCHHHHHHc--CCcHHHHh
Confidence 9999999999974 67888775
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-80 Score=774.13 Aligned_cols=564 Identities=34% Similarity=0.515 Sum_probs=508.3
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 673 RLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSV 752 (1255)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 752 (1255)
.++++.++.++.++++++++++.+++.+..++.++.+++....... ......+...++++.++..++.+++.+...+
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (571)
T TIGR02203 4 RLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD---RSVLWWVPLVVIGLAVLRGICSFVSTYLLSW 80 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667778888888888888888888888888876543221 1122233445666777788888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 753 MGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTL 832 (1255)
Q Consensus 753 ~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l 832 (1255)
.+.++...+|+.+++++++.|.++|+ +.++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++
T Consensus 81 ~~~~~~~~lr~~l~~~~~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~ 158 (571)
T TIGR02203 81 VSNKVVRDIRVRMFEKLLGLPVSFFD--RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTL 158 (571)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999998 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 000846 833 VMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSG 912 (1255)
Q Consensus 833 ~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1255)
+++++.|+.++..+...+..+....+..+...+..+.+.|.++|+++||+++.++++.++|.+..++..+...+..+...
T Consensus 159 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (571)
T TIGR02203 159 IVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGS 238 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888777777777777788888888999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Q 000846 913 IGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEID 992 (1255)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 992 (1255)
....+..++..+..++++++|++++..|.+++|.++++..+...+..++..+...+..+..++.+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (571)
T TIGR02203 239 ISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD 318 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 88888888888899999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECC
Q 000846 993 PDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDE 1072 (1255)
Q Consensus 993 ~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG 1072 (1255)
.... +. .+..+.|+++||+|+|+++ ++++|+|+||+|+|||+++|+|+||||||||+++|+|+|+|++|+|++||
T Consensus 319 ~~~~---~~-~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g 393 (571)
T TIGR02203 319 TGTR---AI-ERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDG 393 (571)
T ss_pred CCCC---CC-CCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECC
Confidence 2111 11 1234679999999999754 45799999999999999999999999999999999999999999999999
Q ss_pred eecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChH
Q 000846 1073 QDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKA-DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGG 1151 (1255)
Q Consensus 1073 ~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~-~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 1151 (1255)
+|+++++.+++|++|+||||||++|+|||||||.++++ +.++++++++++.+++++++.++|+||||.+||+|.+||||
T Consensus 394 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 394 HDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred EeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 99999999999999999999999999999999999987 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHH
Q 000846 1152 QKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNE 1231 (1255)
Q Consensus 1152 QkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~e 1231 (1255)
||||||||||++++|+|||||||||+||++|++.|.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|++
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~ 553 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNE 553 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred HHhhhcCchhHHHHhhh
Q 000846 1232 LVALSRGGAYYSLIKPQ 1248 (1255)
Q Consensus 1232 Ll~~~~~g~y~~l~~~~ 1248 (1255)
|++. ++.|++++..+
T Consensus 554 l~~~--~~~~~~~~~~~ 568 (571)
T TIGR02203 554 LLAR--NGLYAQLHNMQ 568 (571)
T ss_pred HHHc--CCHHHHHHHHh
Confidence 9985 78999998765
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-80 Score=786.61 Aligned_cols=553 Identities=24% Similarity=0.335 Sum_probs=481.9
Q ss_pred HHHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 5 DGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLC 84 (1255)
Q Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1255)
+.++++..++++ .+...++++++..++....|++++.++|....... . ..+..+.+.++++.++..++.+++.++
T Consensus 136 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~--~--~~l~~~~~~~~~~~~~~~~~~~~~~~~ 210 (694)
T TIGR03375 136 HWFWSTLKESWP-LYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA--F--ETLWVLAIGVALAIVFDFVLKTLRSYF 210 (694)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--H--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544333 33344444455455555556888999997542211 1 223333334444555667888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 85 WTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFIL 164 (1255)
Q Consensus 85 ~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (1255)
..+.+.++..++|.++|+|++++|+.| ++ .++|++++|+ +|++.+++++...+...+.+++.+++++++++++
T Consensus 211 ~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~-----~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (694)
T TIGR03375 211 LDVAGKKADLILSAKLFERVLGLRMEA-RP-----ASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAII 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccc-CC-----CChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 54 6788999999 7999999999988888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 000846 165 SWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIK 244 (1255)
Q Consensus 165 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~ 244 (1255)
+|+++++.++.+|+++++..++.++.++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+
T Consensus 284 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR03375 284 GGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLK 363 (694)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000846 245 QGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVD 323 (1255)
Q Consensus 245 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 323 (1255)
.....+....+. .+..+..++++|+|++++.+|.+++|.++++..+......|+..+...+..++.++.+.+|+.++++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~ 443 (694)
T TIGR03375 364 SRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQ 443 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888777666555 4444566778899999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccE
Q 000846 324 RTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403 (1255)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~ 403 (1255)
.+++.+... .....++..+.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+
T Consensus 444 ~~~e~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~ 521 (694)
T TIGR03375 444 LPVERPEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGS 521 (694)
T ss_pred CCCCCCCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 765432211 111122345789999999999743 357999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCC
Q 000846 404 VLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQ 483 (1255)
Q Consensus 404 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 483 (1255)
|.+||+|+++++.+++|++|+||||+|++|++||+|||.++.++.++++++++++.+++++++.++|+|+||.+||+|.+
T Consensus 522 I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~ 601 (694)
T TIGR03375 522 VLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRS 601 (694)
T ss_pred EEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCC
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 000846 484 MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESG 563 (1255)
Q Consensus 484 LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g 563 (1255)
||||||||++||||++++|+|||||||||+||+++++.+++.|.+..+++|+|+||||+++++.||+|++|++|+++|+|
T Consensus 602 LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G 681 (694)
T TIGR03375 602 LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADG 681 (694)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred ChhHHhcc
Q 000846 564 SHNELMNR 571 (1255)
Q Consensus 564 ~~~~l~~~ 571 (1255)
+|+||+++
T Consensus 682 ~~~eLl~~ 689 (694)
T TIGR03375 682 PKDQVLEA 689 (694)
T ss_pred CHHHHHHH
Confidence 99999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-80 Score=708.24 Aligned_cols=550 Identities=24% Similarity=0.319 Sum_probs=479.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 22 GTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYL 101 (1255)
Q Consensus 22 ~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 101 (1255)
..+++.+.++....+.+++...++.+..... . ..+..+...++++.++..++.+.+.....+.+.++...+|..++
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~-~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL---F-QSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555666666666543211 1 34455566667777888899999999999999999999999999
Q ss_pred HHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 102 KSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIV 181 (1255)
Q Consensus 102 ~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~ 181 (1255)
+++.+.++.+-++ .++|+..+.++..++.++.+++..++.++...+.++..++.+|+++|.-+++.++..|++.+
T Consensus 81 ~~l~~~gp~~~~~-----~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPl 155 (559)
T COG4988 81 DKLAKLGPAFIAQ-----KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPL 155 (559)
T ss_pred HHHHhCChhhhcC-----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999886 66779999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000846 182 PGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSM-GMIY 260 (1255)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 260 (1255)
.+.++++..++..+++...+.+.++...+.++|+.|+|.|+..+...+++.+..++.++..++.-++.-...... ++.+
T Consensus 156 fMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~ 235 (559)
T COG4988 156 FMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAY 235 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998887766554444444 5556
Q ss_pred HHHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCC
Q 000846 261 VGWAFQAWVGSYLVTE-KGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALS 339 (1255)
Q Consensus 261 ~~~~~~~~~g~~lv~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~ 339 (1255)
.+.+++..+.+...+. |.++....+.+++..-=.+.|+..+...++.-+.+.++.++++.+++.+++..+........+
T Consensus 236 lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~ 315 (559)
T COG4988 236 LSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVAN 315 (559)
T ss_pred HHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcccccccc
Confidence 6666555444444455 788888777777666667888999989999999999999999999987765332221111222
Q ss_pred CccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHH
Q 000846 340 YVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL 419 (1255)
Q Consensus 340 ~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 419 (1255)
....+++++|++|+||+++ ++++|+||++++|+++||||+||||||||+++|+|+++|++|+|.+||+++.+++.+.|
T Consensus 316 ~~~~ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~ 393 (559)
T COG4988 316 EPPIEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAW 393 (559)
T ss_pred CCCceeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHH
Confidence 2234566679999998643 79999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhc
Q 000846 420 RSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALI 499 (1255)
Q Consensus 420 r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~ 499 (1255)
|++++||+|+|++|++||||||.+++++.+++++.++++.+++.+++.. |+|+||.+||+|.+|||||+||++|||||+
T Consensus 394 ~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll 472 (559)
T COG4988 394 RKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALL 472 (559)
T ss_pred HhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhccCCCChhHH
Q 000846 500 RDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQ 579 (1255)
Q Consensus 500 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 579 (1255)
++++++|||||||+||.+||+.|.+.|.++.+++|+|+||||++.+..||+|+||++|+++++|+|++|.++ .+.|++
T Consensus 473 ~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~--~~~y~~ 550 (559)
T COG4988 473 SPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK--QGLYAN 550 (559)
T ss_pred CCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc--CcHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999884 789999
Q ss_pred HHHHHh
Q 000846 580 MVELQQ 585 (1255)
Q Consensus 580 ~~~~~~ 585 (1255)
|+..|+
T Consensus 551 l~~~q~ 556 (559)
T COG4988 551 LLKQQE 556 (559)
T ss_pred HHHHHh
Confidence 998775
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-80 Score=765.81 Aligned_cols=525 Identities=22% Similarity=0.281 Sum_probs=452.7
Q ss_pred HHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 674 LLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVM 753 (1255)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 753 (1255)
++++.++.++.+++.++++++..++....+++++.+++....... ......+...++++.++..++.++..++..+.
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (529)
T TIGR02868 4 ILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP---VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDA 80 (529)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777777777777888888889988886543211 00000111112234556677788888888899
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 754 GEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLV 833 (1255)
Q Consensus 754 ~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l~ 833 (1255)
+.++..++|.++|+++++.|.+||+ ++++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++++
T Consensus 81 ~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 158 (529)
T TIGR02868 81 ALRSLGRLRVRVYDRLARLALAGRR--RFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALV 158 (529)
T ss_pred HHHHHHHHHHHHHHHhhccCccccc--cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999998 77899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 000846 834 MIAVQPLVIGSY-YSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSG 912 (1255)
Q Consensus 834 ~l~~~pl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1255)
+++.+|++.... +...+..+...++.++..++....+.|.++|+++||+|+.++.+.++|.+..++..+...+..+..+
T Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02868 159 LAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATG 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777765443 3333334444555666778888999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Q 000846 913 IGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEID 992 (1255)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 992 (1255)
....+..++..+..++++++|++++..|.++.|.+.++..+......++..+...+..+..+..+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (529)
T TIGR02868 239 LGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRP 318 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcC
Confidence 88888888888888999999999999999999999999988888889999999999999999999999999998765432
Q ss_pred CCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECC
Q 000846 993 PDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDE 1072 (1255)
Q Consensus 993 ~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG 1072 (1255)
......+...++..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 319 ~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g 396 (529)
T TIGR02868 319 EGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDG 396 (529)
T ss_pred CCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 21111011111234679999999999743 3699999999999999999999999999999999999999999999999
Q ss_pred eecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHH
Q 000846 1073 QDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQ 1152 (1255)
Q Consensus 1073 ~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 1152 (1255)
+|++++ .+++|++|+||||||+||+|||||||++|+|+++||++++|++.++++|||.++|+||||++||+|.+|||||
T Consensus 397 ~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ 475 (529)
T TIGR02868 397 VSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGE 475 (529)
T ss_pred EEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCc
Q 000846 1153 KQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRL 1206 (1255)
Q Consensus 1153 kQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl 1206 (1255)
|||||||||++++|+|||||||||+||++||+.|++.+++..+++|+|+||||+
T Consensus 476 rQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 476 RQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999999999999999988999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-79 Score=766.05 Aligned_cols=566 Identities=27% Similarity=0.406 Sum_probs=488.4
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 670 SQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYS 749 (1255)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 749 (1255)
.+|+++++.++.+..+.+.++++++..++....+++++.+++...... ....+.+.++++.++..+..++..+.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (588)
T PRK13657 6 LYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG------DIFPLLAAWAGFGLFNIIAGVLVARH 79 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777778888888888888888888998888654321 11112222333334444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 750 FSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWR 829 (1255)
Q Consensus 750 ~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~ 829 (1255)
..+...++..+++.++|+++++.|..+|+ +.++|++++|+++|++.+...+...+..++..++..++.++++++++|.
T Consensus 80 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (588)
T PRK13657 80 ADRLAHRRRLAVLTEYFERIIQLPLAWHS--QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWR 157 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHC--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666667778999999999999998 6789999999999999999888888888888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHH
Q 000846 830 LTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSW 909 (1255)
Q Consensus 830 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1255)
+++++++++|+.+.......+..+...++..+...+....+.|.+.|+++||+|+.++.+.+++.+..++..+...+...
T Consensus 158 l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (588)
T PRK13657 158 LSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLS 237 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888776666666666666667777778889999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Q 000846 910 YSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRS 989 (1255)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 989 (1255)
.......+.+++..+...+++++|++++..|.+++|+++++..+......++..+...+..+..+..+.+|+.++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~ 317 (588)
T PRK13657 238 WWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVP 317 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 87777888888888888899999999999999999999999999888999999999999999999999999999987654
Q ss_pred CCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEE
Q 000846 990 EIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVF 1069 (1255)
Q Consensus 990 ~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~ 1069 (1255)
+.+... ..... .+..+.|+++||+|+||++ +++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 318 ~~~~~~-~~~~~-~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 318 DVRDPP-GAIDL-GRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred ccCCCC-CCCCc-CCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 422111 11111 1134679999999999742 4699999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCC
Q 000846 1070 MDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLS 1149 (1255)
Q Consensus 1070 idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 1149 (1255)
+||+|+++++.+++|++|+||||||.+|+|||||||++++|+.+|++++++++.+++++++.++|+|+||.+|++|.+||
T Consensus 394 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LS 473 (588)
T PRK13657 394 IDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLS 473 (588)
T ss_pred ECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCC
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCH
Q 000846 1150 GGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSH 1229 (1255)
Q Consensus 1150 gGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~ 1229 (1255)
||||||||||||++++|+|||||||||+||+++|+.|.+.|++..+++|+|+||||++.++.||+|++|++|+++|.|+|
T Consensus 474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~ 553 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSF 553 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HHHHhhhcCchhHHHHhhhc
Q 000846 1230 NELVALSRGGAYYSLIKPQG 1249 (1255)
Q Consensus 1230 ~eLl~~~~~g~y~~l~~~~~ 1249 (1255)
++|+++ ++.|++|+..+.
T Consensus 554 ~~l~~~--~~~y~~l~~~~~ 571 (588)
T PRK13657 554 DELVAR--GGRFAALLRAQG 571 (588)
T ss_pred HHHHHC--CChHHHHHHHhh
Confidence 999975 899999998663
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-79 Score=759.71 Aligned_cols=565 Identities=25% Similarity=0.373 Sum_probs=491.4
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 671 QWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSF 750 (1255)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 750 (1255)
+++++++.++.++.+.++++++++..++....|++++.+++.....+. ...+.+.+++..++..+..++..+..
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD------VLPTLALWAGFGVFNTIAYVLVAREA 80 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777788888888888888889999999999999987653211 11112222233444445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 751 SVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRL 830 (1255)
Q Consensus 751 ~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l 830 (1255)
.....++..++|.++|++++++|++||+ ++++|++++|+++|++.+...+...+..++..++.+++.+++++.++|.+
T Consensus 81 ~~~~~~~~~~lr~~~~~~l~~l~~~~~~--~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 158 (585)
T TIGR01192 81 DRLAHGRRATLLTEAFGRIISMPLSWHQ--QRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRL 158 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777888999999999999998 67899999999999999999998888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHH
Q 000846 831 TLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWY 910 (1255)
Q Consensus 831 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1255)
++++++++|+.++......+..+...++..+...+..+.+.|++.|+++||+|+.++.+.+++.+..++..+...+..+.
T Consensus 159 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (585)
T TIGR01192 159 SIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDW 238 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887776666666666666666777778889999999999999999999999999999999888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Q 000846 911 SGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSE 990 (1255)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 990 (1255)
......+..++..+..++++++|++++..|.+++|.++++..+......++..+...+..+..+..+.+|+.++++.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 318 (585)
T TIGR01192 239 WALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQ 318 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 77777777788888888899999999999999999999999888888999999999999999999999999999886544
Q ss_pred CCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEE
Q 000846 991 IDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFM 1070 (1255)
Q Consensus 991 ~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~i 1070 (1255)
...... ... ..+..+.|+++||+|+|+++ .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 319 ~~~~~~-~~~-~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 394 (585)
T TIGR01192 319 REEPAD-APE-LPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI 394 (585)
T ss_pred ccCCcc-CCC-CCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEE
Confidence 321111 001 11134679999999999742 46899999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCCh
Q 000846 1071 DEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSG 1150 (1255)
Q Consensus 1071 dG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 1150 (1255)
||+|+++++.+++|++++||||||.+|++||+|||.++.|++++++++++++.+++++++.++|+|+||.+|++|.+|||
T Consensus 395 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg 474 (585)
T TIGR01192 395 DGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474 (585)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHH
Q 000846 1151 GQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHN 1230 (1255)
Q Consensus 1151 GQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~ 1230 (1255)
||||||+|||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHhhhcCchhHHHHhhhc
Q 000846 1231 ELVALSRGGAYYSLIKPQG 1249 (1255)
Q Consensus 1231 eLl~~~~~g~y~~l~~~~~ 1249 (1255)
+|+++ +|.|+++++.+.
T Consensus 555 ~l~~~--~~~y~~l~~~~~ 571 (585)
T TIGR01192 555 ELIQK--DGRFYKLLRRSG 571 (585)
T ss_pred HHHHC--CChHHHHHHhCc
Confidence 99985 899999998763
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-79 Score=765.08 Aligned_cols=564 Identities=31% Similarity=0.463 Sum_probs=486.6
Q ss_pred HHHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 5 DGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLC 84 (1255)
Q Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1255)
+.++++.+++++. +++.+++.++..+.....+++++.++|....... . ..+....+.+++++++..++.+++.++
T Consensus 14 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ 88 (582)
T PRK11176 14 RRLWPTIAPFKAG-LIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD---R-SVLKWMPLVVIGLMILRGITSFISSYC 88 (582)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---h-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544443 3444455555554545556788888886542211 0 122222333344566677788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 85 WTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFIL 164 (1255)
Q Consensus 85 ~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (1255)
..+.+.++..++|.++++++++.|..+|++ .++|++++|+++|++.+++.+...+..++.+++.+++.+++++++
T Consensus 89 ~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-----~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (582)
T PRK11176 89 ISWVSGKVVMTMRRRLFGHMMGMPVSFFDK-----QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY 163 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999996 677899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 000846 165 SWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIK 244 (1255)
Q Consensus 165 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~ 244 (1255)
+|++++++++++|+.+++..++.++.++..++.++..++..+...|.++|++++|+|+.|+.+.++|++..++..+...+
T Consensus 164 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (582)
T PRK11176 164 SWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMK 243 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999898888888889999998889999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000846 245 QGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVD 323 (1255)
Q Consensus 245 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 323 (1255)
..+..++..... .+..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..+++++.+.+|+.++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~ 323 (582)
T PRK11176 244 MVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILD 323 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 877776655544 4444556677888999999999999999988888888888999999999999999999999999998
Q ss_pred CCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccE
Q 000846 324 RTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403 (1255)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~ 403 (1255)
.+++.+... ...++..+.|+++||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+
T Consensus 324 ~~~~~~~~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~ 399 (582)
T PRK11176 324 LEQEKDEGK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399 (582)
T ss_pred CCCcCCCCC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCce
Confidence 654322111 1122334679999999999753 357999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCC-CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCC
Q 000846 404 VLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDG-ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGF 482 (1255)
Q Consensus 404 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 482 (1255)
|++||+|+++++.+++|++|+||||||++|++||+|||.++.++ .++++++++++.++++++++++|+|+||.+|++|.
T Consensus 400 I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~ 479 (582)
T PRK11176 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGV 479 (582)
T ss_pred EEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCC
Confidence 99999999999999999999999999999999999999998764 78999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 000846 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVES 562 (1255)
Q Consensus 483 ~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 562 (1255)
+||||||||++|||||+++|+|||||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|+++|.
T Consensus 480 ~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~ 559 (582)
T PRK11176 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVER 559 (582)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhccCCCChhHHHHHHH
Q 000846 563 GSHNELMNRGEGGEYYQMVELQ 584 (1255)
Q Consensus 563 g~~~~l~~~~~~~~~~~~~~~~ 584 (1255)
|+|++++++ ++.|+++++.|
T Consensus 560 g~~~~l~~~--~~~y~~l~~~~ 579 (582)
T PRK11176 560 GTHAELLAQ--NGVYAQLHKMQ 579 (582)
T ss_pred CCHHHHHhC--CChHHHHHHHH
Confidence 999999984 68899998755
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-79 Score=760.81 Aligned_cols=568 Identities=34% Similarity=0.538 Sum_probs=495.8
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 673 RLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSV 752 (1255)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 752 (1255)
.++++.++.+..+.+.++++++.+.+....++.+..+++....... ......+..+++++.++..+..+++.+....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS---SGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666777777888888888888999998886442211 1122223344445555666777888888999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 753 MGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTL 832 (1255)
Q Consensus 753 ~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l 832 (1255)
.+.++...+|..+++++++.|.++|+ +.++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.+++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFD--KNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTS 162 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHc--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999998 5678999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 000846 833 VMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSG 912 (1255)
Q Consensus 833 ~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1255)
++++.+|+.+...+...+..+...++..+...+....+.|.+.|+++||+++.++++.++|.+..++..+...+......
T Consensus 163 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (576)
T TIGR02204 163 LVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRA 242 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888776666666666777777777778888999999999999999999999999999999988888777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Q 000846 913 IGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEID 992 (1255)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 992 (1255)
....+..++..+..++++++|++++..|.++.|.++++..+......++..+...+..+..+..+.+|+.++++.+++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 322 (576)
T TIGR02204 243 LLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIK 322 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCC
Confidence 66666667777777888899999999999999999999999999999999999999999999999999999998755422
Q ss_pred CCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECC
Q 000846 993 PDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDE 1072 (1255)
Q Consensus 993 ~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG 1072 (1255)
..... ...+++..+.|+|+||+|+||+++++++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|++||
T Consensus 323 ~~~~~-~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g 401 (576)
T TIGR02204 323 APAHP-KTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDG 401 (576)
T ss_pred CCCCC-ccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 11111 11112234679999999999854346799999999999999999999999999999999999999999999999
Q ss_pred eecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHH
Q 000846 1073 QDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQ 1152 (1255)
Q Consensus 1073 ~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 1152 (1255)
+|+++++.+++|++|+||||||++|+|||||||.+++|+.++++++++++.+++.+++.++|+|+||++||+|.+|||||
T Consensus 402 ~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq 481 (576)
T TIGR02204 402 VDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQ 481 (576)
T ss_pred EEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHH
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHH
Q 000846 1153 KQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1153 kQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
||||+||||++++|+|||||||||+||+++++.|.+.+++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|
T Consensus 482 ~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l 561 (576)
T TIGR02204 482 RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAEL 561 (576)
T ss_pred HHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHH
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred HhhhcCchhHHHHhhh
Q 000846 1233 VALSRGGAYYSLIKPQ 1248 (1255)
Q Consensus 1233 l~~~~~g~y~~l~~~~ 1248 (1255)
++. ++.|++|++.|
T Consensus 562 ~~~--~~~~~~l~~~~ 575 (576)
T TIGR02204 562 IAK--GGLYARLARLQ 575 (576)
T ss_pred HHc--CChHHHHHhhc
Confidence 875 89999999765
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-82 Score=693.88 Aligned_cols=542 Identities=30% Similarity=0.448 Sum_probs=443.5
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 000846 33 YPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLY--VAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVG 110 (1255)
Q Consensus 33 ~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ 110 (1255)
....+.+.++++|.+..+. .+..+..+.+..+.++ -+-+.++++-+++++|....+-..+++-..+|+|+..+++.
T Consensus 231 ~~~~pi~~k~iv~~ltap~--~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlr 308 (790)
T KOG0056|consen 231 NVSLPILSKWIVDELTAPD--TFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLR 308 (790)
T ss_pred hhhhHHhHHHHHHhhcCcc--hhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhcee
Confidence 3344577788888766322 1110111111111111 12233567778888898889999999999999999999999
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 111 FFDTQEQGSSTTFQVVSTISNDSNSIQ--VAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLFGK 188 (1255)
Q Consensus 111 ~f~~~~~g~~~~g~l~~r~~~D~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~~~~~~~~ 188 (1255)
|.=. ..+|+++..+++..+.+. +.+...+.+.+.++...++.+ ...++||.+|+++.+..++..+......
T Consensus 309 wHL~-----rrtGeVLrvmdrGtssvtll~yvVF~i~PtllDl~va~vYF--~~~Fn~wFgLIVfl~m~lY~~~Ti~iTe 381 (790)
T KOG0056|consen 309 WHLN-----RRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMVYF--FIKFNIWFGLIVFLMMLLYCYVTIKITE 381 (790)
T ss_pred eeec-----ccccceeehhccCcchhhHHHHHHhhcccHHHHhhhhhhhh--hhhHhHHHHHHHHHHHHHHhheeeeeeh
Confidence 9876 567787776665444443 444444444454444333332 2346899999998888777766555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000846 189 LMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSM-GMIYVGWAFQA 267 (1255)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 267 (1255)
...+.++++..+..+..+...+++-|.+|||-|++|+.+.+||.+...++.+...|...-..++...- .++.+.....-
T Consensus 382 WRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gs 461 (790)
T KOG0056|consen 382 WRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGS 461 (790)
T ss_pred hhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhh
Confidence 55566666666667777888899999999999999999999999999998888777644433333222 22222333333
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCCCccceEEE
Q 000846 268 WVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEF 347 (1255)
Q Consensus 268 ~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (1255)
.+.+|+|..+.+++|+.+.+..|++...+|+..+...+..+|++.+-+|+++++++++++..+.+ ...+....+|.|+|
T Consensus 462 ll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P-~a~pl~~~~G~i~f 540 (790)
T KOG0056|consen 462 LLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLP-GAPPLKVTQGKIEF 540 (790)
T ss_pred heeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCC-CCCCccccCCeEEE
Confidence 45567778899999999999999999999999988899999999999999999999888765322 22334456799999
Q ss_pred EeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccEEec
Q 000846 348 RDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVN 427 (1255)
Q Consensus 348 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 427 (1255)
+||+|.|. +++|+|+||||+++||+++|+|||||+||||++++|.||++.++|.|+|||+||++....++|++||+||
T Consensus 541 snvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVP 618 (790)
T KOG0056|consen 541 SNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVP 618 (790)
T ss_pred EEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCccc
Confidence 99999996 4578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 000846 428 QEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLL 507 (1255)
Q Consensus 428 Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~illl 507 (1255)
||..||++||..||.|++|.+++|++.+|++.+++||.|..+|+||+|.|||+|..|||||||||||||+++++|.|++|
T Consensus 619 QDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlL 698 (790)
T KOG0056|consen 619 QDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILL 698 (790)
T ss_pred CcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhccCCCChhHHHHHHHhhc
Q 000846 508 DEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMA 587 (1255)
Q Consensus 508 DEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 587 (1255)
||+|||||..+|+.||.++.++..+||.|+|+||++++-+||.|+|+++|+|+|.|+|+||+.+ ++|.|.+||+.|+..
T Consensus 699 DEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r-dgG~Ya~MWq~qqa~ 777 (790)
T KOG0056|consen 699 DEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKR-DGGAYADMWQAQQAM 777 (790)
T ss_pred cchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhc-cCCcHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999987 589999999877654
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-79 Score=757.41 Aligned_cols=544 Identities=26% Similarity=0.366 Sum_probs=474.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 000846 695 SGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEI 774 (1255)
Q Consensus 695 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 774 (1255)
..++....|++++.+++........ ......+..+++++.++..++.++..++....+.++..++|.++|++++++|+
T Consensus 7 ~~~~~~~~p~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 84 (569)
T PRK10789 7 IAMLQLIPPKVVGIIVDGVTEQHMT--TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHP 84 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 3444556677888888865432111 11122334444455566677778888888889999999999999999999999
Q ss_pred cccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 775 GWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVG-LVLSWRLTLVMIAVQPLVIGSYYSRNVLMK 853 (1255)
Q Consensus 775 ~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~ 853 (1255)
+||+ ++++|++++|+++|++.++..+...+..++..++..++.++++ ++++|.+++++++++|+.+.......+..+
T Consensus 85 ~~~~--~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 162 (569)
T PRK10789 85 EFYL--RHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLH 162 (569)
T ss_pred HHHc--CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 6789999999999999999888888888888766666665555 589999999998888888777666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 854 SMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYG 933 (1255)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 933 (1255)
+..++.++..++....+.|++.|+++||+|+.++.+.++|.+..++..+...+..+..+....+......+...+++++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 242 (569)
T PRK10789 163 ERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGG 242 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777778888999999999999999999999999999999999888888888888777777777777888889999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCccccccccccEEEEE
Q 000846 934 GRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKN 1013 (1255)
Q Consensus 934 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~ 1013 (1255)
++++..|.+++|.++++..+......++..+...+..+..+..+.+|+.++++.+++...... + ..+..+.|+|+|
T Consensus 243 ~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~---~-~~~~~~~I~~~~ 318 (569)
T PRK10789 243 SWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE---P-VPEGRGELDVNI 318 (569)
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC---C-CCCCCCcEEEEE
Confidence 999999999999999999999999999999999999999999999999999987654322111 1 112346799999
Q ss_pred EEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceEEEccC
Q 000846 1014 VFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQE 1093 (1255)
Q Consensus 1014 Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qd 1093 (1255)
|+|+|+.. +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||+
T Consensus 319 v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 397 (569)
T PRK10789 319 RQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQT 397 (569)
T ss_pred EEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccC
Confidence 99999743 35799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEec
Q 000846 1094 PTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDE 1173 (1255)
Q Consensus 1094 p~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILlLDE 1173 (1255)
|++|++||||||++++|++++++++++++.+++++++.++|+||||.+|++|.+||||||||++||||++++|+||||||
T Consensus 398 ~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDE 477 (569)
T PRK10789 398 PFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDD 477 (569)
T ss_pred CeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhhhcCchhHHHHhhhc
Q 000846 1174 ATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQG 1249 (1255)
Q Consensus 1174 aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~ 1249 (1255)
|||+||+++++.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++ +|.|++|++.|.
T Consensus 478 pts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~--~~~y~~l~~~~~ 551 (569)
T PRK10789 478 ALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ--SGWYRDMYRYQQ 551 (569)
T ss_pred ccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc--CChHHHHHHHhh
Confidence 99999999999999999998889999999999999999999999999999999999999975 899999998664
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-78 Score=770.63 Aligned_cols=565 Identities=29% Similarity=0.413 Sum_probs=490.3
Q ss_pred hHHHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 4 NDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGL 83 (1255)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1255)
+..++++..++++ .+...++++++..++....|++++.++|...... +. ..+..+.+.++++.++..++.+++.+
T Consensus 127 ~~~~~~~~~~~~~-~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~--~~--~~l~~l~~~~~~~~~~~~~~~~l~~~ 201 (694)
T TIGR01846 127 FSWFIPAIIRYRK-QFREVLLISLALQLFALVTPLLFQVVIDKVLVHR--GL--STLSVLALAMLAVAIFEPALGGLRTY 201 (694)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--Ch--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555543332 2333444444444444455588889999764221 11 23344444455556667788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 84 CWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFI 163 (1255)
Q Consensus 84 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (1255)
+....+.++..++|.++|++++++|+.||++ .++|++++|+ +|++.+++++...+..++.+++.+++.++++++
T Consensus 202 ~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~-----~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 275 (694)
T TIGR01846 202 LFAHLTSRIDVELGARLYRHLLGLPLGYFES-----RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFF 275 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHcCC-----CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 7888999999 699999999988888888888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 000846 164 LSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGI 243 (1255)
Q Consensus 164 ~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~ 243 (1255)
++|++++++++++|+++++..++.+..++..++..+..++..+.+.|.++|+++||+++.|+.+.++|.+..++..+...
T Consensus 276 ~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 355 (694)
T TIGR01846 276 YSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASF 355 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888888888888899999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000846 244 KQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMV 322 (1255)
Q Consensus 244 ~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 322 (1255)
+.....+...... .+..+..++++|+|++++.+|.+|.|.++++..+......|+..+...+..+++++.+.+|+.+++
T Consensus 356 ~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 435 (694)
T TIGR01846 356 RVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDIL 435 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777665555 444556677889999999999999999999999988999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCcc
Q 000846 323 DRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402 (1255)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G 402 (1255)
+.+++.+.. .....+...+.|+++||+|+|++. ++++|+|+||+++|||++||||+||||||||+++|+|+|+|++|
T Consensus 436 ~~~~e~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G 512 (694)
T TIGR01846 436 NSPTEPRSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHG 512 (694)
T ss_pred cCCCCccCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 876543221 111122345789999999999743 34699999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCC
Q 000846 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGF 482 (1255)
Q Consensus 403 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 482 (1255)
+|++||+++++++.+++|++|+||||+|++|++||+|||.++.++.++++++++|+.+++++++.++|+|+||.+|++|.
T Consensus 513 ~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~ 592 (694)
T TIGR01846 513 QVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGA 592 (694)
T ss_pred eEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCC
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 000846 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVES 562 (1255)
Q Consensus 483 ~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 562 (1255)
+||||||||++||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++.
T Consensus 593 ~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~ 672 (694)
T TIGR01846 593 NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAES 672 (694)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhccCCCChhHHHHHHH
Q 000846 563 GSHNELMNRGEGGEYYQMVELQ 584 (1255)
Q Consensus 563 g~~~~l~~~~~~~~~~~~~~~~ 584 (1255)
|+|++++++ .+.|+++++.|
T Consensus 673 g~~~~l~~~--~~~y~~l~~~~ 692 (694)
T TIGR01846 673 GRHEELLAL--QGLYARLWQQQ 692 (694)
T ss_pred CCHHHHHHc--CChHHHHHHhh
Confidence 999999984 68999998754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-78 Score=757.78 Aligned_cols=563 Identities=26% Similarity=0.382 Sum_probs=473.7
Q ss_pred HHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 6 GLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLCW 85 (1255)
Q Consensus 6 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (1255)
++++|..++++ .+++.+++.++..+..+..+++++.++|....... ........+.+.++++.++..++.+++.+..
T Consensus 13 ~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (592)
T PRK10790 13 RLLAYGSPWRK-PLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGN--LPLGLVAGLAAAYVGLQLLAAGLHYAQSLLF 89 (592)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333 34455666666666666777899999997542211 1100111122223344455667788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 86 TRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILS 165 (1255)
Q Consensus 86 ~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1255)
...+.++..++|.++|+++++.|.++|+. .++|++++|+++|++.+++.+...+..++.++..+++.++++++++
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-----~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (592)
T PRK10790 90 NRAAVGVVQQLRTDVMDAALRQPLSAFDT-----QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLD 164 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCC-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999996 6778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 000846 166 WRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQ 245 (1255)
Q Consensus 166 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~ 245 (1255)
|++++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+.
T Consensus 165 ~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (592)
T PRK10790 165 WRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQT 244 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888777777888878888888888889999999999999999999999999999999888887777776
Q ss_pred HHHHHHHH-HHH-HHHHH-HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000846 246 GFIKGLLM-GSM-GMIYV-GWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMV 322 (1255)
Q Consensus 246 ~~~~~~~~-~~~-~~~~~-~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 322 (1255)
....+... .+. .+... ..+++++.| . +..|.+++|.++++..+......|+..+...+..+.++..+++|+.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l 322 (592)
T PRK10790 245 LRLDGFLLRPLLSLFSALILCGLLMLFG-F-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELM 322 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66555432 222 11111 122223333 3 5789999999999998888899999999999999999999999999999
Q ss_pred cCCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCcc
Q 000846 323 DRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402 (1255)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G 402 (1255)
+.+++.... ...+...++|+++||+|+|++ +.++|+|+||++++||++||||+||||||||+++|+|+|+|++|
T Consensus 323 ~~~~~~~~~----~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G 396 (592)
T PRK10790 323 DGPRQQYGN----DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG 396 (592)
T ss_pred cCCCccCCC----CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCc
Confidence 865432111 111223467999999999974 34699999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCC
Q 000846 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGF 482 (1255)
Q Consensus 403 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 482 (1255)
+|.+||+|+++++.+++|++|+||||+|++|++||+|||.++. +.++++++++++.++++++++++|+|+||.+||+|.
T Consensus 397 ~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~ 475 (592)
T PRK10790 397 EIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGN 475 (592)
T ss_pred eEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCC
Confidence 9999999999999999999999999999999999999999997 688999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 000846 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVES 562 (1255)
Q Consensus 483 ~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 562 (1255)
+||||||||++|||||+++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||++.++.||+|++|++|++++.
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~ 555 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQ 555 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred cChhHHhccCCCChhHHHHHHHhhc
Q 000846 563 GSHNELMNRGEGGEYYQMVELQQMA 587 (1255)
Q Consensus 563 g~~~~l~~~~~~~~~~~~~~~~~~~ 587 (1255)
|+|+||+++ ++.|+++++.+...
T Consensus 556 G~~~~L~~~--~~~y~~l~~~~~~~ 578 (592)
T PRK10790 556 GTHQQLLAA--QGRYWQMYQLQLAG 578 (592)
T ss_pred cCHHHHHhC--CCHHHHHHHHHhhh
Confidence 999999984 68999999876433
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-78 Score=751.33 Aligned_cols=564 Identities=30% Similarity=0.455 Sum_probs=498.1
Q ss_pred HHHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 5 DGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLC 84 (1255)
Q Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1255)
+.++++..+. +..++++++++++.++..+..+++++.++|....... . ..+..+...++++.++.+++.+++.++
T Consensus 3 ~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~-~~~~~~~~~~~~~~i~~~~~~~~~~~~ 77 (571)
T TIGR02203 3 RRLWSYVRPY-KAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD---R-SVLWWVPLVVIGLAVLRGICSFVSTYL 77 (571)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc---h-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566665544 3455667777777777777778888888886432111 1 223333334556667777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 85 WTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFIL 164 (1255)
Q Consensus 85 ~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (1255)
..+.+.++..++|..+++++++.|.++|++ .++|++++|+++|++.+++++...+..++.+++.+++++++++++
T Consensus 78 ~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~-----~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 152 (571)
T TIGR02203 78 LSWVSNKVVRDIRVRMFEKLLGLPVSFFDR-----QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYY 152 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999996 677899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 000846 165 SWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIK 244 (1255)
Q Consensus 165 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~ 244 (1255)
+|++++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.++.|+.+.++|.+..++..+...+
T Consensus 153 ~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (571)
T TIGR02203 153 SWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMK 232 (571)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000846 245 QGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVD 323 (1255)
Q Consensus 245 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 323 (1255)
.....+....+. .+..+..++++++|++++.+|.+|+|.++++..++.....|+..+...+..+++++.+.+|+.++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 312 (571)
T TIGR02203 233 MTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLD 312 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 877777666555 4445666778889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccE
Q 000846 324 RTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403 (1255)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~ 403 (1255)
.+++.+... ....+..+.|+++||+|+|++. +.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+
T Consensus 313 ~~~~~~~~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~ 388 (571)
T TIGR02203 313 SPPEKDTGT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQ 388 (571)
T ss_pred CCCCCCCCC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCe
Confidence 655432111 1112234679999999999754 357999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCC-CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCC
Q 000846 404 VLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKD-GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGF 482 (1255)
Q Consensus 404 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 482 (1255)
|++||+++++++.+++|++|+||||+|++|++|++|||.++.+ +.++++++++++.+++++++.++|+|+||.+|++|.
T Consensus 389 I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~ 468 (571)
T TIGR02203 389 ILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGV 468 (571)
T ss_pred EEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCC
Confidence 9999999999999999999999999999999999999999986 789999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 000846 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVES 562 (1255)
Q Consensus 483 ~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 562 (1255)
+||||||||++||||++++|+|++||||||+||+++++.+.+.|++..+++|+|+||||++.+..||+|++|++|++++.
T Consensus 469 ~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~ 548 (571)
T TIGR02203 469 LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVER 548 (571)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEee
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhccCCCChhHHHHHHH
Q 000846 563 GSHNELMNRGEGGEYYQMVELQ 584 (1255)
Q Consensus 563 g~~~~l~~~~~~~~~~~~~~~~ 584 (1255)
|+|++++++ .+.|+++++.+
T Consensus 549 g~~~~l~~~--~~~~~~~~~~~ 568 (571)
T TIGR02203 549 GTHNELLAR--NGLYAQLHNMQ 568 (571)
T ss_pred CCHHHHHHc--CCHHHHHHHHh
Confidence 999999874 56888776643
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-81 Score=678.57 Aligned_cols=493 Identities=31% Similarity=0.452 Sum_probs=426.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000846 748 YSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVG-LVL 826 (1255)
Q Consensus 748 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~-~~~ 826 (1255)
.++...++.+...+--+.|.|+..+++.|.- +..+|.+...+.....-++..+...+...+..++-+....+++ ..+
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl--~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHL--ERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhh--hcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 4566778888888999999999999999987 5567766666666666666666666666666666554444443 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHH
Q 000846 827 SWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLK 906 (1255)
Q Consensus 827 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~ 906 (1255)
+|+.+++.++++.+.+.+.....--.....+...+...+.+....+++-+.+|+|.|+.|+++..+|.+.++.+.+...+
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 88888777766665555444332223334556667778888889999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000846 907 HSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILD 986 (1255)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 986 (1255)
...-.++.......+...........+...+..|.+|.|+++....++.....|+..+.....++.++..-.++.+++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 66655555556666667777777888888999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCc
Q 000846 987 RRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066 (1255)
Q Consensus 987 ~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G 1066 (1255)
.+.+....+ ..++......|.|.|+||+|.|. |.+|+|+|+||++++|+++||||+||+||||+.++|+||||+++|
T Consensus 242 ~~~~v~d~p-da~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 242 VEAEVSDAP-DAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred cchhhccCC-CCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 876654332 22222113468899999999995 456899999999999999999999999999999999999999999
Q ss_pred eEEECCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCC
Q 000846 1067 SVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGV 1146 (1255)
Q Consensus 1067 ~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~ 1146 (1255)
.|.|||+|++++..+++|+.||+||||.+||++|+..|+.||+|+++++|++.|++.+++++||.++|+||||.|||+|-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 000846 1147 QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQ 1226 (1255)
Q Consensus 1147 ~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~ 1226 (1255)
.||||||||+||||++|++|+||+||||||+||..||++||.+|++..+|+|+++|||||+||.+||.|+||++|+|+|.
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHhhhcCchhHHHHhh
Q 000846 1227 GSHNELVALSRGGAYYSLIKP 1247 (1255)
Q Consensus 1227 G~~~eLl~~~~~g~y~~l~~~ 1247 (1255)
|+|+||+++ +|.|++||..
T Consensus 479 g~h~~ll~~--~g~ya~mw~~ 497 (497)
T COG5265 479 GTHEELLAA--GGLYAEMWRR 497 (497)
T ss_pred CcHHHHHHc--CChHHHHhcC
Confidence 999999986 9999999963
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-78 Score=746.31 Aligned_cols=523 Identities=23% Similarity=0.275 Sum_probs=444.3
Q ss_pred HHHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHH--HHHHHHHHHHHHHHHHHHH
Q 000846 5 DGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKY--TLRLLYVAIGVGLSAFVEG 82 (1255)
Q Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 82 (1255)
+++++|.+++++. +++.++++++..+.....+++++.++|...... .....+ ...++++.++..++.++..
T Consensus 2 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (529)
T TIGR02868 2 LRILPLLQPRTRR-LVVAILLGALALGSAVALLGVSAWLISRAAEMP------PVLYLSVAAVAVRAFGIGRAVFRYLER 74 (529)
T ss_pred hhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777655443 345555555555555556688899998754211 111111 1112234455677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 83 LCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSF 162 (1255)
Q Consensus 83 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (1255)
++..+.+.++..++|.++|++++++|.+||++ .++|++++|+++|++.+++.+...+..++..+..+++++++++
T Consensus 75 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-----~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (529)
T TIGR02868 75 LVGHDAALRSLGRLRVRVYDRLARLALAGRRR-----FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIA 149 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcccccc-----CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999996 7788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 000846 163 ILSWRLSLAALPLTLMFIVPGLLF-GKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMEL 241 (1255)
Q Consensus 163 ~~~~~l~l~~l~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~ 241 (1255)
+++|.+++++++.+|++.++...+ .+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+.
T Consensus 150 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~ 229 (529)
T TIGR02868 150 LLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAA 229 (529)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHH
Confidence 999999999988877776655444 4444556667777889999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 242 GIKQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFE 320 (1255)
Q Consensus 242 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~ 320 (1255)
..+.....+....+. .+..+..++++|+|++++.+|.+++|.++++..+......|+..+...+..+++++.+.+|+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~ 309 (529)
T TIGR02868 230 ERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEE 309 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777766555 4445566677899999999999999999999888888888888888888999999999999999
Q ss_pred HhcCCCCCCCCCcc-cccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 000846 321 MVDRTPAIDTDDKM-GKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP 399 (1255)
Q Consensus 321 ~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~ 399 (1255)
+++.+++.+..... ....++..+.|+|+||+|+|+++ +++|+|+||+++|||++|||||||||||||+++|+|+|+|
T Consensus 310 ~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 310 VTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred HhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 99876542211110 11112234679999999999753 3699999999999999999999999999999999999999
Q ss_pred CccEEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcC
Q 000846 400 VEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQ 479 (1255)
Q Consensus 400 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~ 479 (1255)
++|+|.+||+|++++ .+++|++|+||||+|+||++||+|||.+|.+++++++++++++.+++++++.++|+|+||.+||
T Consensus 388 ~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige 466 (529)
T TIGR02868 388 LQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGE 466 (529)
T ss_pred CCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhcc
Confidence 999999999999999 9999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCc
Q 000846 480 LGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRL 542 (1255)
Q Consensus 480 ~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~ 542 (1255)
+|.+||||||||+|||||++++|+|||||||||+||+++++.|++.+++..+++|+|+||||+
T Consensus 467 ~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 467 GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999999999999999999999999988899999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-77 Score=738.61 Aligned_cols=564 Identities=27% Similarity=0.369 Sum_probs=479.2
Q ss_pred hHHHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 4 NDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGL 83 (1255)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1255)
++++++|..++++ .+++.++++++..+..+..+++++.++|...... . ...+.+.+++++++..+..++...
T Consensus 7 ~~~l~~~l~~~k~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (585)
T TIGR01192 7 YVRALSYLNVHKN-RVLLIVIANITLAAITIAEPILFGRIIDAISSKS------D-VLPTLALWAGFGVFNTIAYVLVAR 78 (585)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------c-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777765544 4456667777777777777899999999764321 1 111111222223333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 84 CWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFI 163 (1255)
Q Consensus 84 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (1255)
+..+...++..++|.++|++++++|++||++ .++|++++|+++|++.+.+.+...+...+..++.+++.++++++
T Consensus 79 ~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~-----~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (585)
T TIGR01192 79 EADRLAHGRRATLLTEAFGRIISMPLSWHQQ-----RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFA 153 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666667779999999999999996 67889999999999999999988888888888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 000846 164 LSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGI 243 (1255)
Q Consensus 164 ~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~ 243 (1255)
++|++++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...
T Consensus 154 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~ 233 (585)
T TIGR01192 154 MDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQY 233 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888999998888888888889999999999999999999999999999999999988888777
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000846 244 KQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMV 322 (1255)
Q Consensus 244 ~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 322 (1255)
+.....++...+. .+..+..++++++|++++.+|.+++|.++++..+......|+..+...+..+..++.+.+|+.+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~ 313 (585)
T TIGR01192 234 PVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLE 313 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666555444 334455567788999999999999999999988888888899999888999999999999999999
Q ss_pred cCCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCcc
Q 000846 323 DRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402 (1255)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G 402 (1255)
+.+++.+... .....+...+.|+++||+|+|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|
T Consensus 314 ~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 390 (585)
T TIGR01192 314 DSVFQREEPA-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG 390 (585)
T ss_pred cCCccccCCc-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCC
Confidence 8654322111 111112234679999999999742 3589999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCC
Q 000846 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGF 482 (1255)
Q Consensus 403 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 482 (1255)
+|.+||.++.+++.+++|++++||||+|++|++|++|||.++.++.++++++++++.+++++++.++|+|++|.+|++|.
T Consensus 391 ~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~ 470 (585)
T TIGR01192 391 QILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGN 470 (585)
T ss_pred EEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCC
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 000846 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVES 562 (1255)
Q Consensus 483 ~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 562 (1255)
+||||||||++|||||+++|++||||||||+||+++++.+.+.|++..+++|+|+||||++++..||+|++|++|++++.
T Consensus 471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~ 550 (585)
T TIGR01192 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEK 550 (585)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred cChhHHhccCCCChhHHHHHHHh
Q 000846 563 GSHNELMNRGEGGEYYQMVELQQ 585 (1255)
Q Consensus 563 g~~~~l~~~~~~~~~~~~~~~~~ 585 (1255)
|+|++++++ ++.|+++++.+.
T Consensus 551 g~~~~l~~~--~~~y~~l~~~~~ 571 (585)
T TIGR01192 551 GSFQELIQK--DGRFYKLLRRSG 571 (585)
T ss_pred CCHHHHHHC--CChHHHHHHhCc
Confidence 999999884 689999987653
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-77 Score=743.02 Aligned_cols=564 Identities=28% Similarity=0.386 Sum_probs=475.1
Q ss_pred hHHHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 4 NDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGL 83 (1255)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1255)
+++++++..++ +..+.+.++++++..++.+..+++++.++|.+... .......+.+++++++..+..++...
T Consensus 7 ~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (588)
T PRK13657 7 YARVLQYLGAE-KRLGILLAVANVLLAAATFAEPILFGRIIDAISGK-------GDIFPLLAAWAGFGLFNIIAGVLVAR 78 (588)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566665443 33344555555555556666668889999975431 11122222222223333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 84 CWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFI 163 (1255)
Q Consensus 84 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (1255)
+..+...++..++|.+++++++++|..+|++ .++|++++|+++|++.+.+.+...+..++..++.+++.++++++
T Consensus 79 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-----~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (588)
T PRK13657 79 HADRLAHRRRLAVLTEYFERIIQLPLAWHSQ-----RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALF 153 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHCc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666667779999999999999996 78889999999999999998888888888888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 000846 164 LSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGI 243 (1255)
Q Consensus 164 ~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~ 243 (1255)
++|++++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|++++|.|+.++.+.+++.+..++..+...
T Consensus 154 ~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~ 233 (588)
T PRK13657 154 MNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQM 233 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888888888888899999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000846 244 KQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMV 322 (1255)
Q Consensus 244 ~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 322 (1255)
+.....++..... .+..+..++++++|++++.+|.+++|.++++..+......|+..+...+..+..+..+.+|+.+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~ 313 (588)
T PRK13657 234 PVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVE 313 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777666555444 344455667788999999999999999999988888888999999998999999999999999999
Q ss_pred cCCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCcc
Q 000846 323 DRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402 (1255)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G 402 (1255)
+.+++.+... ......+..+.|+++||+|+|+++ +++|+|+||+++|||+++|+|+||||||||+++|+|+|+|++|
T Consensus 314 ~~~~~~~~~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G 390 (588)
T PRK13657 314 DAVPDVRDPP-GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG 390 (588)
T ss_pred CCCcccCCCC-CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 8654322111 111112234579999999999742 4699999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCC
Q 000846 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGF 482 (1255)
Q Consensus 403 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 482 (1255)
+|++||+++++++.+.+|++|+||||+|++|++||+|||.++.++.++++++++++.+++++++.++|+|+||.+|++|.
T Consensus 391 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~ 470 (588)
T PRK13657 391 RILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGR 470 (588)
T ss_pred EEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCC
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 000846 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVES 562 (1255)
Q Consensus 483 ~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 562 (1255)
+||||||||++|||||+++|+|+|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.
T Consensus 471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~ 550 (588)
T PRK13657 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVES 550 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999988789999999999999999999999999999999
Q ss_pred cChhHHhccCCCChhHHHHHHHh
Q 000846 563 GSHNELMNRGEGGEYYQMVELQQ 585 (1255)
Q Consensus 563 g~~~~l~~~~~~~~~~~~~~~~~ 585 (1255)
|+|++++++ .+.|+++++.+.
T Consensus 551 g~~~~l~~~--~~~y~~l~~~~~ 571 (588)
T PRK13657 551 GSFDELVAR--GGRFAALLRAQG 571 (588)
T ss_pred CCHHHHHHC--CChHHHHHHHhh
Confidence 999999974 688999887654
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-77 Score=741.00 Aligned_cols=537 Identities=25% Similarity=0.394 Sum_probs=468.8
Q ss_pred HHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccc
Q 000846 36 MVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQ 115 (1255)
Q Consensus 36 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~ 115 (1255)
.+++++.++|....... .. .....+...++++.++..++.+++.++....+.++..++|.++|++++++|+++|++
T Consensus 14 ~p~~~~~iid~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~- 89 (569)
T PRK10789 14 PPKVVGIIVDGVTEQHM-TT--GQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLR- 89 (569)
T ss_pred HHHHHHHHHHHhccCCc-ch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-
Confidence 34788889987542210 01 123333344444555666778888888888999999999999999999999999996
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 116 EQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFS-FILSWRLSLAALPLTLMFIVPGLLFGKLMMGVI 194 (1255)
Q Consensus 116 ~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~ 194 (1255)
.++|++++|+++|++.++..+...+..++..++.++++++++ ++++|++++++++++|+++++...+.++..+..
T Consensus 90 ----~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~ 165 (569)
T PRK10789 90 ----HRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERF 165 (569)
T ss_pred ----CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999888887878877766666666555 589999999999999999888888999888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 000846 195 MKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSM-GMIYVGWAFQAWVGSYL 273 (1255)
Q Consensus 195 ~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~l 273 (1255)
++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.....+...... .......++++++|+++
T Consensus 166 ~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~l 245 (569)
T PRK10789 166 KLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWM 245 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999988888888777776655544 33444556778899999
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCCCccceEEEEeEEEE
Q 000846 274 VTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFC 353 (1255)
Q Consensus 274 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 353 (1255)
+.+|.+++|.++++..+......|+..+...+..+..++.+.+|+.++++.+++.+... ...++.++.|+++||+|+
T Consensus 246 v~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~~ 322 (569)
T PRK10789 246 VVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQFT 322 (569)
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEEE
Confidence 99999999999999999888899999999999999999999999999998765422111 111223467999999999
Q ss_pred cCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccEEeccCCccC
Q 000846 354 YPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLF 433 (1255)
Q Consensus 354 y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 433 (1255)
|+.. +.++|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+|.+||+++.+++..++|++++||+|+|++|
T Consensus 323 y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf 401 (569)
T PRK10789 323 YPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLF 401 (569)
T ss_pred CCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeec
Confidence 9753 357999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 000846 434 ATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSA 513 (1255)
Q Consensus 434 ~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~illlDEpts~ 513 (1255)
++|++|||.++.++.++++++++++.+++++++.++|+|++|.+|++|.+||||||||++||||++++|+|||||||||+
T Consensus 402 ~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~ 481 (569)
T PRK10789 402 SDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSA 481 (569)
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccc
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhccCCCChhHHHHHHHhh
Q 000846 514 LDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQM 586 (1255)
Q Consensus 514 lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~ 586 (1255)
||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++.|+|++++++ .+.|+++++.|+.
T Consensus 482 LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~--~~~y~~l~~~~~~ 552 (569)
T PRK10789 482 VDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ--SGWYRDMYRYQQL 552 (569)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc--CChHHHHHHHhhh
Confidence 9999999999999998889999999999999999999999999999999999999974 6889999987654
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-76 Score=741.90 Aligned_cols=568 Identities=35% Similarity=0.514 Sum_probs=486.4
Q ss_pred HHHHhhhCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 5 DGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLC 84 (1255)
Q Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1255)
+.+++|..+.++ .+.+.+++.++.+++....+++++.++|...... +. .....+..+++++.++..++.+++.++
T Consensus 7 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (576)
T TIGR02204 7 AALWPFVRPYRG-RVLAALVALLITAAATLSLPYAVRLMIDHGFSKD--SS--GLLNRYFAFLLVVALVLALGTAARFYL 81 (576)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc--cH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666544433 3445566666666666667788999998743211 11 122223333344445556677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 85 WTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFIL 164 (1255)
Q Consensus 85 ~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (1255)
..+.+.++..++|..+++++++.|.++|+. .++|++++|+++|++.+++.+...+..++.+++.+++++++++++
T Consensus 82 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-----~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (576)
T TIGR02204 82 VTWLGERVVADIRRAVFAHLISLSPSFFDK-----NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFIT 156 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHcc-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999986 667899999999999999999998889899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 000846 165 SWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIK 244 (1255)
Q Consensus 165 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~ 244 (1255)
+|++++++++.+|+.+++..++.+..++..++.++..++..+.+.|.++|+++||+++.|+.+.++|.+..++..+...+
T Consensus 157 ~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (576)
T TIGR02204 157 SPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQ 236 (576)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888899999999999999999999999999999999999999999999999999888777777
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000846 245 QGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVD 323 (1255)
Q Consensus 245 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 323 (1255)
......+..... .+.+...++.+++|++++.+|.+++|.++++..+......|+..+...+..+.+++.+.+|+.++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~ 316 (576)
T TIGR02204 237 RIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQ 316 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 666655544443 3334555677788999999999999999999888888899999999999999999999999999998
Q ss_pred CCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccE
Q 000846 324 RTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403 (1255)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~ 403 (1255)
.+++.+..........+..+.|+++||+|+||.++++++|+|+||+++|||+++|+||||||||||+++|+|+++|++|+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~ 396 (576)
T TIGR02204 317 AEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGR 396 (576)
T ss_pred CCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE
Confidence 65442211111111122345799999999998543357999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCC
Q 000846 404 VLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQ 483 (1255)
Q Consensus 404 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 483 (1255)
|++||.++++++.+++|++|+||||+|++|++||+|||.++.++.++++++++++.+++.++++++|+|++|.+|++|.+
T Consensus 397 I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~ 476 (576)
T TIGR02204 397 ILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVT 476 (576)
T ss_pred EEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCc
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 000846 484 MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESG 563 (1255)
Q Consensus 484 LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g 563 (1255)
||||||||++||||++++|+|||||||||+||+++++.+.+.++++.+++|+|+||||++.++.+|+|++|++|++++.|
T Consensus 477 LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g 556 (576)
T TIGR02204 477 LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQG 556 (576)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeee
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhccCCCChhHHHHHHH
Q 000846 564 SHNELMNRGEGGEYYQMVELQ 584 (1255)
Q Consensus 564 ~~~~l~~~~~~~~~~~~~~~~ 584 (1255)
+|++++++ ++.|+++++.|
T Consensus 557 ~~~~l~~~--~~~~~~l~~~~ 575 (576)
T TIGR02204 557 THAELIAK--GGLYARLARLQ 575 (576)
T ss_pred cHHHHHHc--CChHHHHHhhc
Confidence 99999874 68888887644
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-77 Score=736.81 Aligned_cols=528 Identities=26% Similarity=0.338 Sum_probs=461.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 682 WGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRV 761 (1255)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 761 (1255)
|+.+.++++++++.+++.+..+++++++++....... .......+...+++++++..++.++..+...+.+.++..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGE--PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQL 79 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777788888888899999999987642111 11223334455666677788889999999999999999999
Q ss_pred HHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 762 REKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLV 841 (1255)
Q Consensus 762 r~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~ 841 (1255)
|.++|+++++.|..||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.+++++++.+|+.
T Consensus 80 r~~l~~~l~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~ 157 (529)
T TIGR02857 80 RERLLAAVAALGPGWLQ--GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLI 157 (529)
T ss_pred HHHHHHHHHhCCchhhc--cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999998 6889999999999999999999998899998888888899999999999999998888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 000846 842 IGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFF 921 (1255)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 921 (1255)
+...+...+..+...++..+..++....+.|+++|+++||+|+.|+++.++|.+..++..+...+..+.......+..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02857 158 PIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555666666666777778888999999999999999999999999999999998888888877777777777777
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCccc
Q 000846 922 NTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDI 1001 (1255)
Q Consensus 922 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~ 1001 (1255)
..+...+++.++++.+..|.+++|.++++..+......++..+...+..+.++..+.+|+.++++.+++..... +.
T Consensus 238 ~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~----~~ 313 (529)
T TIGR02857 238 ATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA----PV 313 (529)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc----CC
Confidence 77776666666777777999999999988888888888999999999999999999999999998543221111 11
Q ss_pred cccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHH
Q 000846 1002 KRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLK 1081 (1255)
Q Consensus 1002 ~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~ 1081 (1255)
+.+..+.|+|+||+|+||++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+
T Consensus 314 ~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~ 392 (529)
T TIGR02857 314 TAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADAD 392 (529)
T ss_pred CCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHH
Confidence 11123579999999999854 34799999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHH
Q 000846 1082 QLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161 (1255)
Q Consensus 1082 ~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARA 1161 (1255)
++|++|+||||||.+|++||||||.++.|+++|++++++++.+++++|++++|+||||.+||+|.+||||||||++||||
T Consensus 393 ~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa 472 (529)
T TIGR02857 393 SWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA 472 (529)
T ss_pred HHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEE
Q 000846 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVI 1218 (1255)
Q Consensus 1162 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl 1218 (1255)
++++|+|||||||||+||++||+.|++.+++..+++|+|+||||+++++.||+|+||
T Consensus 473 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-77 Score=674.54 Aligned_cols=551 Identities=26% Similarity=0.406 Sum_probs=453.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 22 GTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYL 101 (1255)
Q Consensus 22 ~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 101 (1255)
.+.+.+.+.......|.+++.++|.........-..+........+.+..++..++..++.+.+.++.+++.++.-.++|
T Consensus 35 ~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf 114 (591)
T KOG0057|consen 35 ALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVF 114 (591)
T ss_pred HHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555556668889998876411111000012223344556667788889999999999999999999999999
Q ss_pred HHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000846 102 KSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCL-LFSFILSWRLSLAALPLTLMFI 180 (1255)
Q Consensus 102 ~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~l~~l~~~~l~~ 180 (1255)
.+.+.++.++|-. .++|.+.+.+.+-...|...+...+..++..++-+.... .+..-.++..+++.+..+..+.
T Consensus 115 ~~~~~ld~~~~~~-----~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~ 189 (591)
T KOG0057|consen 115 RHLMSLDLSFFLS-----RGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYA 189 (591)
T ss_pred HHHHhhhHHhhcC-----CCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhh
Confidence 9999999999996 778899999999999999888877776666665443333 3333455666666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000846 181 VPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSM-GMI 259 (1255)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 259 (1255)
...........+...+..++.+.+.+.+-+.+.|.++||+||.|+.+.++|.....+..+...+.....++....- .+.
T Consensus 190 a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iF 269 (591)
T KOG0057|consen 190 AFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIF 269 (591)
T ss_pred eeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHH
Confidence 5555556666677778888899999999999999999999999999999999999999988888777666554443 233
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCC
Q 000846 260 YVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALS 339 (1255)
Q Consensus 260 ~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~ 339 (1255)
.+..+.+.+.|..-+.++.+|.|.++.......++..|+..+...+..+.++..-++-.+...+....+.. ...+..
T Consensus 270 sv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~---~~~~i~ 346 (591)
T KOG0057|consen 270 SVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE---AALPIE 346 (591)
T ss_pred HHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh---ccCCcc
Confidence 34445555666666778899999998888788888888888888787777777766666555433221111 112334
Q ss_pred CccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHH
Q 000846 340 YVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL 419 (1255)
Q Consensus 340 ~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 419 (1255)
..++.|+|+||+|+|+. ++++|+++||+|++||++||||+|||||||++++|.||++ ++|+|+|||+|+++++++.+
T Consensus 347 ~~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~Sl 423 (591)
T KOG0057|consen 347 LFGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESL 423 (591)
T ss_pred cCCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHh
Confidence 45678999999999973 4579999999999999999999999999999999999999 99999999999999999999
Q ss_pred hcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhc
Q 000846 420 RSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALI 499 (1255)
Q Consensus 420 r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~ 499 (1255)
|+.|||||||..||++||.+||.||++.++++++.++|+.+++||.+.++|+||+|.+||+|..|||||||||+||||++
T Consensus 424 R~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~l 503 (591)
T KOG0057|consen 424 RQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFL 503 (591)
T ss_pred hhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhccCCCChhHH
Q 000846 500 RDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQ 579 (1255)
Q Consensus 500 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 579 (1255)
+||+|+++|||||+||.+||+.+.+.+.+...+||+|+|.||+++++.||+|+++++|++.|.|+|+||+. ..+.|.+
T Consensus 504 Kda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~--~s~~~~~ 581 (591)
T KOG0057|consen 504 KDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA--PSELYAD 581 (591)
T ss_pred cCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh--hhhHHHH
Confidence 99999999999999999999999999999888999999999999999999999999999999999999998 4688888
Q ss_pred HHHHHh
Q 000846 580 MVELQQ 585 (1255)
Q Consensus 580 ~~~~~~ 585 (1255)
+|..|.
T Consensus 582 ~w~~~~ 587 (591)
T KOG0057|consen 582 LWTTQT 587 (591)
T ss_pred Hhcccc
Confidence 887654
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-77 Score=802.51 Aligned_cols=535 Identities=21% Similarity=0.283 Sum_probs=453.3
Q ss_pred HHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc
Q 000846 34 PLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFD 113 (1255)
Q Consensus 34 p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~ 113 (1255)
.+..++++.+.+........ .....+..++++++++.+++.++..+++.+.+.+.+.++|.+++++++++|++|||
T Consensus 982 ~~~~~~l~~w~~~~~~~~~~----~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~ 1057 (1522)
T TIGR00957 982 LASNYWLSLWTDDPMVNGTQ----NNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFE 1057 (1522)
T ss_pred HHHHHHHHHHhccccccCCC----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhc
Confidence 34446777777642111000 11223334556667777788888888889999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 114 TQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLFGKLMMGV 193 (1255)
Q Consensus 114 ~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~ 193 (1255)
+ +++|+++||+++|++.+++.+...+..++..++.+++.++++++.+|++++++++++++++++..++.+..++.
T Consensus 1058 ~-----~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 1132 (1522)
T TIGR00957 1058 R-----TPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQL 1132 (1522)
T ss_pred c-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 67779999999999999999999999999999999999999999999887777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 194 IMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSMGMIYVGWAFQAWVGSYL 273 (1255)
Q Consensus 194 ~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 273 (1255)
.+...+..+...+.+.|+++|+++||+|++|+.+.+++.+..+...+..........+......++ ...++++.+.+.
T Consensus 1133 ~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 1210 (1522)
T TIGR00957 1133 KRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECV--GNCIVLFAALFA 1210 (1522)
T ss_pred HHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 777777788899999999999999999999999999998888877776655444444433322111 122334445555
Q ss_pred Hh-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--CCcccccCCCccceEEEEeE
Q 000846 274 VT-EKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDT--DDKMGKALSYVRGEIEFRDV 350 (1255)
Q Consensus 274 v~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~~v 350 (1255)
+. .+.+++|.+.+++.+......++..+...+..++.+++|++|+.++++.+++.+. +....++.|+.+|.|+|+||
T Consensus 1211 v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nV 1290 (1522)
T TIGR00957 1211 VISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNY 1290 (1522)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEE
Confidence 44 5779999999988888888899999999999999999999999999987655321 11111223456789999999
Q ss_pred EEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccEEeccCC
Q 000846 351 YFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEP 430 (1255)
Q Consensus 351 ~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 430 (1255)
+|+|+.+. .++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|.|||+|+++++.+++|++|++|||||
T Consensus 1291 sf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp 1369 (1522)
T TIGR00957 1291 CLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDP 1369 (1522)
T ss_pred EEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCC
Confidence 99997542 46999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 000846 431 VLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEA 510 (1255)
Q Consensus 431 ~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~illlDEp 510 (1255)
.||+|||||||... .+++++++++|++.+++++++.++|+|+||.+||+|.+||||||||+||||||+++|+|||||||
T Consensus 1370 ~LF~gTIr~NLdp~-~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEa 1448 (1522)
T TIGR00957 1370 VLFSGSLRMNLDPF-SQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEA 1448 (1522)
T ss_pred cccCccHHHHcCcc-cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 99999999999832 26899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhccCCCChhHHHHHH
Q 000846 511 TSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVEL 583 (1255)
Q Consensus 511 ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 583 (1255)
||+||+++++.|++.|++..+++|+|+||||++++.+||||+||++|+|+|.|+|+||+++ ++.|+++++.
T Consensus 1449 TSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~--~~~f~~l~~~ 1519 (1522)
T TIGR00957 1449 TAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ--RGIFYSMAKD 1519 (1522)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC--CCHHHHHHHH
Confidence 9999999999999999999899999999999999999999999999999999999999985 5899999865
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-76 Score=789.24 Aligned_cols=535 Identities=23% Similarity=0.287 Sum_probs=419.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc
Q 000846 35 LMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDT 114 (1255)
Q Consensus 35 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~ 114 (1255)
+..++++.+.|...... .....+.+++++++++..++.+++.+++.+.+.+...++|.+++++++++|++|||+
T Consensus 933 ~~~~wl~~w~~~~~~~~------~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~ 1006 (1622)
T PLN03130 933 SSSTWLSEWTDQGTPKT------HGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT 1006 (1622)
T ss_pred HHHHHHHHHHhccccCC------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc
Confidence 34467777776432110 122334555666777778888999999999999999999999999999999999997
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 115 QEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLFGKLMMGVI 194 (1255)
Q Consensus 115 ~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~ 194 (1255)
+++|+++||+++|++.+++.++..+..++..++.+++.++++++++|...++++++..+++++..++.+..++..
T Consensus 1007 -----~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~ 1081 (1622)
T PLN03130 1007 -----NPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVK 1081 (1622)
T ss_pred -----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666799999999999999999999999999999888888888888875443333333333333444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 195 MKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSMGMIYVGWAFQAWVGSYLV 274 (1255)
Q Consensus 195 ~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv 274 (1255)
+......+...+.+.|+++|+++||+|++++++.+++.+..+...+..........+..... ..+...++++.+.+.+
T Consensus 1082 r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l--~~~~~~~i~~~~~~~v 1159 (1622)
T PLN03130 1082 RLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRL--ETLGGLMIWLTASFAV 1159 (1622)
T ss_pred HHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 55566677788999999999999999999987777666655544433222221111111111 1111122222333334
Q ss_pred hhCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC--CcccccCCCccceEE
Q 000846 275 TEKG-EK-----GGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTD--DKMGKALSYVRGEIE 346 (1255)
Q Consensus 275 ~~~~-~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~~~~i~ 346 (1255)
..+. .. .+.+..++.+......++..+...+..++.++.|++|+.++++.+++.+.. .....+.|+.+|.|+
T Consensus 1160 ~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~ 1239 (1622)
T PLN03130 1160 MQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIK 1239 (1622)
T ss_pred HcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEE
Confidence 3332 11 122222223333444445555566677889999999999999876653211 111122345678999
Q ss_pred EEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccEEe
Q 000846 347 FRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLV 426 (1255)
Q Consensus 347 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 426 (1255)
|+||+|+|+++ .+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|.|||+|+++++.+++|++|++|
T Consensus 1240 f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiV 1318 (1622)
T PLN03130 1240 FEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGII 1318 (1622)
T ss_pred EEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEE
Confidence 99999999643 24799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 000846 427 NQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILL 506 (1255)
Q Consensus 427 ~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~ill 506 (1255)
||||.||+|||||||.++. +.+++++++|++.+++++++.++|+|+||.+||+|.+||||||||+||||||+++|+|||
T Consensus 1319 pQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILI 1397 (1622)
T PLN03130 1319 PQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILV 1397 (1622)
T ss_pred CCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999876 578999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhccCCCChhHHHHHHHh
Q 000846 507 LDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQ 585 (1255)
Q Consensus 507 lDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 585 (1255)
||||||+||++|++.|+++|++..+++|+|+||||++++.+||||+||++|+|+|.|+|+||+++ .++.|++|++.+.
T Consensus 1398 LDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~-~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1398 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSN-EGSAFSKMVQSTG 1475 (1622)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhC-CCCHHHHHHHHcC
Confidence 99999999999999999999999899999999999999999999999999999999999999985 3589999987644
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-76 Score=661.43 Aligned_cols=554 Identities=22% Similarity=0.305 Sum_probs=453.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 15 DKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTS 94 (1255)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1255)
.+..++++++++++..+....+..+-|+++..-...+.... -.+.......=++++...+..|...+..+....++..
T Consensus 14 ~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~--f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~ 91 (573)
T COG4987 14 HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYI--FNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLS 91 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34556777777776666555555666777664322111000 0111112223346778888999999999999999999
Q ss_pred HHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 95 RMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALP 174 (1255)
Q Consensus 95 ~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~ 174 (1255)
++|.++|+++...+..-..+ ..+||++||+..|++.+++.+-..+.+.+..+..+.+..+.+-+++|.+++....
T Consensus 92 ~lRv~~f~kl~p~sp~~~~r-----~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~ 166 (573)
T COG4987 92 ALRVRLFEKLEPLSPALLLR-----YRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGL 166 (573)
T ss_pred HHHHHHHHhhccCChHHHHh-----cChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999988886 7888999999999999999999999999998888888888888899998754443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 175 -LTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLM 253 (1255)
Q Consensus 175 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1255)
.+.+++++..++.+..++..++..+..+...+.+.|.+.|....+.||.++.+.+.+.+.-..+.+...|...+.++..
T Consensus 167 ~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~ 246 (573)
T COG4987 167 ILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSD 246 (573)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555667777777888888888889999999999999999999999999999999999888888888888888776
Q ss_pred HHHH-HHHHH-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000846 254 GSMG-MIYVG-WAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGAL-PNLTAITEAKVAATRIFEMVDRTPAIDT 330 (1255)
Q Consensus 254 ~~~~-~~~~~-~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 330 (1255)
.+.. +.... ...++|.++ .+-.|..+......+.+.++....++..+. ..+....+...|++|+.++++.+++...
T Consensus 247 a~~~l~~g~~v~~~l~w~a~-~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~ 325 (573)
T COG4987 247 AILLLIAGLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTF 325 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCC
Confidence 6652 22222 224556553 233455543333333333333333333333 3456778888999999999998776543
Q ss_pred CCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCee
Q 000846 331 DDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYK 410 (1255)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~ 410 (1255)
+.. +.+... ..++++||+|+||+. ..++|+|+||++++||++||+|+|||||||++++|.|.|+|++|+|+++|.+
T Consensus 326 ~~~--~~~~~~-~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~ 401 (573)
T COG4987 326 PDE--QTATTG-QALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVE 401 (573)
T ss_pred Ccc--ccCCcc-ceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcC
Confidence 211 111111 279999999999965 4679999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHH
Q 000846 411 IRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQ 490 (1255)
Q Consensus 411 ~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrq 490 (1255)
+..++.+.+|+.|++++|.++||++|+|||+.+++|++++|+++++++++++++++...|+|++|.+||.|.+|||||||
T Consensus 402 ~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r 481 (573)
T COG4987 402 IASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481 (573)
T ss_pred hhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhc
Q 000846 491 RIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 491 ri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
|+||||+|++|++++||||||.+||+.||+.+.+.|.+..+|||+|+||||+..++.||||+||++|+++|+|+|++|+.
T Consensus 482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCChhHHHHH
Q 000846 571 RGEGGEYYQMVE 582 (1255)
Q Consensus 571 ~~~~~~~~~~~~ 582 (1255)
+++.|+++++
T Consensus 562 --~~g~~~~l~q 571 (573)
T COG4987 562 --NNGRYKRLYQ 571 (573)
T ss_pred --cccHHHHHhc
Confidence 4788988764
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-75 Score=722.34 Aligned_cols=524 Identities=23% Similarity=0.288 Sum_probs=453.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 19 MLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRM 98 (1255)
Q Consensus 19 ~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 98 (1255)
+.++++++++.++..+..++++++++|...... ... ..+..+...+++++++..++.+++.++..+.+.++..++|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAG-EPL--AELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666677777777799999999763111 111 23334444555666777888999999999999999999999
Q ss_pred HHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 99 EYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLM 178 (1255)
Q Consensus 99 ~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l 178 (1255)
++|++++++|..+|++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++.+|+
T Consensus 82 ~l~~~l~~~~~~~~~~-----~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l 156 (529)
T TIGR02857 82 RLLAAVAALGPGWLQG-----RPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPL 156 (529)
T ss_pred HHHHHHHhCCchhhcc-----CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999996 78889999999999999999999888999999889999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 000846 179 FIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSM-G 257 (1255)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 257 (1255)
++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+......... .
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (529)
T TIGR02857 157 IPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLEL 236 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887778888888888888888999999999999999999999999999999999998888887777766655544433 2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccc
Q 000846 258 MIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKA 337 (1255)
Q Consensus 258 ~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~ 337 (1255)
+..+...+++.++++.+.+|.++.|.++++..+......|+..+...+..+++++.+.+|+.++++.+++.... ...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~---~~~ 313 (529)
T TIGR02857 237 FATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK---APV 313 (529)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC---cCC
Confidence 22333334444566677789999999999888888888899999889999999999999999999854332111 111
Q ss_pred CCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHH
Q 000846 338 LSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLK 417 (1255)
Q Consensus 338 ~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~ 417 (1255)
+.+..+.|+++||+|+||+. ++++|+|+||+++|||+++||||||||||||+++|+|+|+|++|+|.+||+|+++++.+
T Consensus 314 ~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~ 392 (529)
T TIGR02857 314 TAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADAD 392 (529)
T ss_pred CCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHH
Confidence 11123579999999999853 24799999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHH
Q 000846 418 WLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARA 497 (1255)
Q Consensus 418 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARa 497 (1255)
++|++++||+|+|++|++||+|||.++.++.++++++++++.++++++++++|+|+||.+||+|.+||||||||++||||
T Consensus 393 ~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa 472 (529)
T TIGR02857 393 SWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA 472 (529)
T ss_pred HHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEE
Q 000846 498 LIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVL 554 (1255)
Q Consensus 498 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl 554 (1255)
++++|+|+|||||||+||+++++.+.+.++++.+++|+|+||||+++++.||+|++|
T Consensus 473 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999999988899999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-75 Score=719.85 Aligned_cols=536 Identities=24% Similarity=0.337 Sum_probs=463.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 682 WGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRV 761 (1255)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 761 (1255)
++.+...++++++..++....|+.++.+++....... ......+.+.++++.++..++.+++.++..+.+.++..++
T Consensus 5 k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 5 KSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS---VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777778888899999886642211 1122234445555666777888889999999999999999
Q ss_pred HHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 762 REKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGD-RMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPL 840 (1255)
Q Consensus 762 r~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl 840 (1255)
|.++|+++++.|+..+ +...+++.+|++.+++.+.. .+..++..++.++. ++++++++|.+++++++.+|+
T Consensus 82 r~~~~~~ll~~~~~~~-------~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~~~l 153 (544)
T TIGR01842 82 NQPIFAASFSATLRRG-------KIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGGAVV 153 (544)
T ss_pred HHHHHHHHhcCcccCc-------cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999998432 45688899999999988876 45555555555444 467889999999988887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 000846 841 VIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQF 920 (1255)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 920 (1255)
++...+...+..++..++.++..++....+.|+++|+++||+|+.++.+.++|.+..++..+...+..+..+....+..+
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (544)
T TIGR01842 154 LVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKY 233 (544)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655555555566666777778888899999999999999999999999999999999988888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCcc
Q 000846 921 FNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRD 1000 (1255)
Q Consensus 921 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~ 1000 (1255)
+..+..++++++|++++..|.+|+|.++++..+......++..+...+.++..+..+.+|+.++++.+++.+... +
T Consensus 234 ~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~----~ 309 (544)
T TIGR01842 234 FRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM----P 309 (544)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC----C
Confidence 888888889999999999999999999999999999999999999999999999999999999998755432111 1
Q ss_pred ccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCH
Q 000846 1001 IKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNL 1080 (1255)
Q Consensus 1001 ~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~ 1080 (1255)
. .+..+.|+++||+|+||+. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.
T Consensus 310 ~-~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~ 387 (544)
T TIGR01842 310 L-PEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387 (544)
T ss_pred C-CCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCH
Confidence 1 1134679999999999743 3579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHH
Q 000846 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALAR 1160 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalAR 1160 (1255)
+++|++++||||||++|++|+||||+++++++++++++++++.++++++++++|+|+||.+||+|.+||||||||+||||
T Consensus 388 ~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lAR 467 (544)
T TIGR01842 388 ETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALAR 467 (544)
T ss_pred HHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999887778999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHh
Q 000846 1161 AILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1161 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
|++++|+|||||||||+||+++++.+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|+||++
T Consensus 468 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 468 ALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999999999999885 6899999999999999999999999999999999999975
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-77 Score=688.95 Aligned_cols=485 Identities=27% Similarity=0.446 Sum_probs=368.5
Q ss_pred eEEEEeEEEEcCCCCC-CccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCC----ccEEEECCeecCCCCHHH
Q 000846 344 EIEFRDVYFCYPSRPD-TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV----EGEVLLDGYKIRRLHLKW 418 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~----~G~i~~~g~~~~~~~~~~ 418 (1255)
-++++|++..|..... ..+++||||++.+||++||||+|||||||+++.|.|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975432 25999999999999999999999999999999999999987 899999999998888655
Q ss_pred Hh----cccEEeccCCc-cCcc--cHHHHhccCC---CCCCHHHHHHHHHHhchHHHHhc--CCCcccchhcCCCCCCCh
Q 000846 419 LR----SQMGLVNQEPV-LFAT--SITENILFGK---DGASMDDVISAAKAANAHDFITK--LPDGYETQVGQLGFQMSG 486 (1255)
Q Consensus 419 ~r----~~i~~v~Q~~~-l~~~--ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~~g~~LSg 486 (1255)
+| +.|+||+|+|. .+|. ||.+-|.-.. .....++. ...+.+.++. +|+-... .....+|||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea-----~~~a~elL~~Vgl~~~~~~--~~yPheLSG 157 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEA-----RKRAVELLEQVGLPDPERR--DRYPHQLSG 157 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHH-----HHHHHHHHHHcCCCChhhh--ccCCcccCc
Confidence 43 57999999985 4543 6666654210 01111111 1111223332 2322211 457789999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 000846 487 GQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESG 563 (1255)
Q Consensus 487 Gqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g 563 (1255)
|||||+.||+||..+|++||+||||++||+.++..|.+.|+++. .|.++|+|||++..+.. ||||+||++|+++|.|
T Consensus 158 G~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G 237 (539)
T COG1123 158 GMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETG 237 (539)
T ss_pred hHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999985 48999999999999865 9999999999999999
Q ss_pred ChhHHhccCCCChhHHHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCCCCCCcCCCC
Q 000846 564 SHNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTP 643 (1255)
Q Consensus 564 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1255)
+.+++++++...+-..++..- +
T Consensus 238 ~~~~i~~~p~hpYT~~Ll~a~--------------------------------------------p-------------- 259 (539)
T COG1123 238 PTEEILSNPQHPYTRGLLAAV--------------------------------------------P-------------- 259 (539)
T ss_pred CHHHHHhccCCcccHHHHhhC--------------------------------------------C--------------
Confidence 999998753211111110000 0
Q ss_pred CcccccCCCCCCCccccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Q 000846 644 YSYTIQYDPDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKS 723 (1255)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 723 (1255)
T Consensus 260 -------------------------------------------------------------------------------- 259 (539)
T COG1123 260 -------------------------------------------------------------------------------- 259 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHH
Q 000846 724 KSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVG 803 (1255)
Q Consensus 724 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~ 803 (1255)
..+.....
T Consensus 260 ----------------------------------------------------~~~~~~~~-------------------- 267 (539)
T COG1123 260 ----------------------------------------------------RLGDEKII-------------------- 267 (539)
T ss_pred ----------------------------------------------------Cccccccc--------------------
Confidence 00000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHh
Q 000846 804 DRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAF 883 (1255)
Q Consensus 804 ~~l~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~ 883 (1255)
T Consensus 268 -------------------------------------------------------------------------------- 267 (539)
T COG1123 268 -------------------------------------------------------------------------------- 267 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 000846 884 SSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAE 963 (1255)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1255)
T Consensus 268 -------------------------------------------------------------------------------- 267 (539)
T COG1123 268 -------------------------------------------------------------------------------- 267 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCccccccccccEEEEEEEEECCCCC--------CCccccceeEEEe
Q 000846 964 AGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRP--------DQMILKGLSLKIE 1035 (1255)
Q Consensus 964 ~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~--------~~~vL~~vs~~I~ 1035 (1255)
..+... + .. ...-++++|++.+|..+. ...+++||||+++
T Consensus 268 ----------------------~~~~~~-~--~~-------~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~ 315 (539)
T COG1123 268 ----------------------RLPRRG-P--LR-------AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLR 315 (539)
T ss_pred ----------------------cccccc-c--cc-------cCceeEeeeeeeeeccccccccccccceeeeeeeeeEec
Confidence 000000 0 00 011378999999997421 2468999999999
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCee--cCCCCHHHHhcceEEEccCCC--CC-cccHHHHHhcCCC
Q 000846 1036 AGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQD--IRNYNLKQLRSHIALVSQEPT--LF-AGTIRENIAYGKA 1110 (1255)
Q Consensus 1036 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~d--i~~i~~~~lR~~i~~V~Qdp~--LF-~gTIreNl~~g~~ 1110 (1255)
+||++||||+||||||||.++|+|+.+|++|+|.++|.| .+.-+...+|+++-+|+|||+ |- ..||+++|.-.-.
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~ 395 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLR 395 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHh
Confidence 999999999999999999999999999999999999977 333335568889999999997 33 4699999953211
Q ss_pred ---CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHH
Q 000846 1111 ---DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183 (1255)
Q Consensus 1111 ---~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te 1183 (1255)
... .+.+.+.++.+++.. . .......+||||||||+||||||..+|++||+|||||+||+-+.
T Consensus 396 ~~~~~~~~~~~~rv~~ll~~VgL~~-------~---~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvq 465 (539)
T COG1123 396 IHGGGSGAERRARVAELLELVGLPP-------E---FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQ 465 (539)
T ss_pred hhcccchHHHHHHHHHHHHHcCCCH-------H---HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHH
Confidence 111 112333344443321 1 24455678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhhhcCchhHHHHhhh
Q 000846 1184 SLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248 (1255)
Q Consensus 1184 ~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~ 1248 (1255)
+.|.+.|.++.+ |.|.|+|||+++.++. ||||+||++|+|||.|+.+++.+. +...|.+..-..
T Consensus 466 a~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~-p~h~Ytr~L~~a 532 (539)
T COG1123 466 AQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN-PQHPYTRKLLAA 532 (539)
T ss_pred HHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcC-CCChHHHHHHHh
Confidence 999999998764 7999999999999987 999999999999999999999886 788888765443
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-75 Score=780.35 Aligned_cols=515 Identities=23% Similarity=0.305 Sum_probs=414.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHH
Q 000846 61 DKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAI 140 (1255)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~ 140 (1255)
..+...+++++++..++.+++.+++.+.+.+.+.++|.+++++++++|++|||+ +++|+++||+++|++.+++.+
T Consensus 950 ~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~-----~~~G~ilnr~s~Di~~id~~l 1024 (1495)
T PLN03232 950 GFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT-----NPTGRVINRFSKDIGDIDRNV 1024 (1495)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc-----CCchHHHHHhHhhHHHHHHHH
Confidence 345556667777778888999999999999999999999999999999999997 667799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000846 141 CEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYS 220 (1255)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~ 220 (1255)
...+..++..++.+++.++++++++|...++++++..++.++..++.+..++..+......+...+.+.|+++|+++||+
T Consensus 1025 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIra 1104 (1495)
T PLN03232 1025 ANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRA 1104 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhc
Confidence 99888888888888888888877776443333322222223333444445556666667778888999999999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCC-----HHHHHHHHHHHHHH
Q 000846 221 YVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSMGMIYVGWAFQAWVGSYLVTE-KGEK-----GGSIFVAGVSIIMG 294 (1255)
Q Consensus 221 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~-~~~~-----~g~~~~~~~~~~~~ 294 (1255)
|++++.+.+++.+..+...+..........+.... +..+...++++.+.+.+.. +.+. .+.+..++.+....
T Consensus 1105 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~ 1182 (1495)
T PLN03232 1105 YKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIR--LETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNI 1182 (1495)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHH
Confidence 99999887777666555544333222222211111 1111122222233333332 3221 11222233444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc--ccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecC
Q 000846 295 GLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDK--MGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPA 372 (1255)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~ 372 (1255)
..++..+...+..++.+..|++|+.++++.+++.+.... ...+.++.+|.|+|+||+|+|+.+ .+++|+|+||+|+|
T Consensus 1183 ~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~ 1261 (1495)
T PLN03232 1183 TTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSP 1261 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcC
Confidence 567777888889999999999999999987665332111 112224567889999999999633 24799999999999
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHH
Q 000846 373 GKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDD 452 (1255)
Q Consensus 373 g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~ 452 (1255)
||++|||||||||||||+++|.|+|+|++|+|.|||+|+++++.+++|++|+||||||.||+|||||||.++. ++++++
T Consensus 1262 GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdee 1340 (1495)
T PLN03232 1262 SEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDAD 1340 (1495)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875 689999
Q ss_pred HHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC
Q 000846 453 VISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKG 532 (1255)
Q Consensus 453 ~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~ 532 (1255)
+++|++.+++++++.++|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..++
T Consensus 1341 i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~ 1420 (1495)
T PLN03232 1341 LWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKS 1420 (1495)
T ss_pred HHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred CeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhccCCCChhHHHHHHHh
Q 000846 533 RTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQ 585 (1255)
Q Consensus 533 ~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 585 (1255)
+|+|+||||++++.+||+|+||++|+|+|.|+|+||+++ .++.|++|++.+.
T Consensus 1421 ~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~-~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1421 CTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSR-DTSAFFRMVHSTG 1472 (1495)
T ss_pred CEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCCHHHHHHHHhC
Confidence 999999999999999999999999999999999999985 3468999987654
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-74 Score=711.48 Aligned_cols=532 Identities=23% Similarity=0.306 Sum_probs=450.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 20 LFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRME 99 (1255)
Q Consensus 20 ~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 99 (1255)
++.++++++..+.....|+++++++|....... . ..+..+...++++.++..++.+++.++..+.+.++..++|.+
T Consensus 9 ~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~--~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 84 (544)
T TIGR01842 9 IIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS--V--PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQP 84 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555888999996542111 1 233334444455556677888899999999999999999999
Q ss_pred HHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 100 YLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMF 179 (1255)
Q Consensus 100 ~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~ 179 (1255)
++++++++|+..+ +...+++++|++.+++.+.......+...+..++.++++++++|++++++++.+|++
T Consensus 85 ~~~~ll~~~~~~~----------~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~ 154 (544)
T TIGR01842 85 IFAASFSATLRRG----------KIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGAVVL 154 (544)
T ss_pred HHHHHhcCcccCc----------cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999998432 246788999999999988774333333333344455778999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000846 180 IVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSM-GM 258 (1255)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 258 (1255)
+++..++.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+.....+...... .+
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888888888899999999999999999999999999999999999999998888877777666655544 33
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccC
Q 000846 259 IYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKAL 338 (1255)
Q Consensus 259 ~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~ 338 (1255)
.....++++++|++++.+|.+|+|.++++..+......|+..+...+..+++++.+.+|+.++++.+++.++. ...
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~~ 310 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MPL 310 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CCC
Confidence 3445566778999999999999999999998888889999999999999999999999999999865542211 111
Q ss_pred CCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHH
Q 000846 339 SYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW 418 (1255)
Q Consensus 339 ~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~ 418 (1255)
+..++.|+++||+|+|++. +.++|+|+||+++|||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++.++
T Consensus 311 ~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 311 PEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET 389 (544)
T ss_pred CCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH
Confidence 2234679999999999743 347999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHh
Q 000846 419 LRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARAL 498 (1255)
Q Consensus 419 ~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal 498 (1255)
+|++++||||+|++|++|++|||.++.++.++++++++++.++++++++++|+|++|.+|++|.+||||||||++||||+
T Consensus 390 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARal 469 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARAL 469 (544)
T ss_pred HhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999987777889999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhc
Q 000846 499 IRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 499 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
+++|++||||||||+||+++++.+.+.|+++. +++|+|+||||++.+..||+|++|++|++++.|+|+++++
T Consensus 470 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 470 YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred hcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999999885 6899999999999998999999999999999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-75 Score=738.18 Aligned_cols=545 Identities=22% Similarity=0.324 Sum_probs=458.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 23 TIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLK 102 (1255)
Q Consensus 23 ~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 102 (1255)
+++.++..+......++++.+.+.-...... . .....+.+.+.+++++..++.+++.+.+...+.+.+++||+++++
T Consensus 823 ~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~--~-~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~ 899 (1381)
T KOG0054|consen 823 LLLFVLTQVLQIASNYWLSYWTDDGEDNGTT--T-VSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLN 899 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccc--C-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555557778877653211100 0 123455666777788888888899999999999999999999999
Q ss_pred HHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 103 SVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVP 182 (1255)
Q Consensus 103 ~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~~ 182 (1255)
+++|.||+|||++|. |+|+||+++|++.+++.++..+..++..++.+++.++++.+..|++.++++++..+++..
T Consensus 900 ~Ilrapm~FFdtTP~-----GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~ 974 (1381)
T KOG0054|consen 900 SILRAPMSFFDTTPT-----GRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFV 974 (1381)
T ss_pred HHHhCcchhcCCCCc-----cchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Confidence 999999999998554 599999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 000846 183 GLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQ---GFIKGLLMGSMGMI 259 (1255)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 259 (1255)
..+|.+..++..+-....++-..+++.|+++|+.|||+|+.|+++.+++....+...+...-. .++.++..-+...
T Consensus 975 ~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~- 1053 (1381)
T KOG0054|consen 975 QRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGN- 1053 (1381)
T ss_pred HHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 888888888887766667777889999999999999999999999999998887766554432 2333333222211
Q ss_pred HHHHHHHHHHHHHHHh-hCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCCccc
Q 000846 260 YVGWAFQAWVGSYLVT-EKG-EKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAID--TDDKMG 335 (1255)
Q Consensus 260 ~~~~~~~~~~g~~lv~-~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~--~~~~~~ 335 (1255)
.+++..+...++ .+. .++|.+-..+.+.+.....+...+.....+...++|+|||.+|.+.++|.+ .+...+
T Consensus 1054 ----~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~p 1129 (1381)
T KOG0054|consen 1054 ----LVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRP 1129 (1381)
T ss_pred ----HHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCC
Confidence 111111112222 222 667888777788888877888888888999999999999999999765511 111113
Q ss_pred ccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCC
Q 000846 336 KALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH 415 (1255)
Q Consensus 336 ~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~ 415 (1255)
++.||.+|+|+|+|++.+|..+ .++|||||||+|+|||++||||++|||||||+++|.|+.+|.+|+|.|||.|+.++.
T Consensus 1130 p~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~ig 1208 (1381)
T KOG0054|consen 1130 PPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIG 1208 (1381)
T ss_pred CCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeeccccc
Confidence 5568899999999999999643 367999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHH
Q 000846 416 LKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIA 495 (1255)
Q Consensus 416 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lA 495 (1255)
+++||++++++||||.||+||||.|+. +.++.+|+++|+|++.+++.+.++++|+|+|+.|.|+|.|+|-||||.+|||
T Consensus 1209 L~dLRsrlsIIPQdPvLFsGTvR~NLD-Pf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLA 1287 (1381)
T KOG0054|consen 1209 LHDLRSRLSIIPQDPVLFSGTVRFNLD-PFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLA 1287 (1381)
T ss_pred HHHHHhcCeeeCCCCceecCccccccC-cccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHH
Confidence 999999999999999999999999997 5567899999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhccCCCC
Q 000846 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGG 575 (1255)
Q Consensus 496 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~ 575 (1255)
|||+++++||+||||||++|++|...||++|++..+++|||.|+||++++.++|||+|||+|+|+|.|+|.+|+++ +++
T Consensus 1288 RALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~-~~S 1366 (1381)
T KOG0054|consen 1288 RALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSD-KDS 1366 (1381)
T ss_pred HHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhC-Ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 467
Q ss_pred hhHHHHHH
Q 000846 576 EYYQMVEL 583 (1255)
Q Consensus 576 ~~~~~~~~ 583 (1255)
.|+++...
T Consensus 1367 ~f~~~l~~ 1374 (1381)
T KOG0054|consen 1367 LFSSLLKE 1374 (1381)
T ss_pred hHHHHHHH
Confidence 77655543
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-74 Score=775.71 Aligned_cols=511 Identities=21% Similarity=0.260 Sum_probs=425.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 66 RLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKIS 145 (1255)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~ 145 (1255)
+++++.++..++.+++.++....+.+...++|.+++++++++|+.|||+ +++|+++||+++|++.+++.+...+.
T Consensus 1003 ~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~-----~~~G~ilnR~s~Di~~id~~l~~~l~ 1077 (1560)
T PTZ00243 1003 VYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT-----TPLGRILNRFSRDIDILDNTLPMSYL 1077 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC-----CCccHHHHHHHhhHHHHHHHHHHHHH
Confidence 3334444444555566666666777888999999999999999999997 56679999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 000846 146 NTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEH 225 (1255)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~ 225 (1255)
.++..++.+++.++++++.+|.+.+++++++.++..+..++.+..++..+......+...+.+.|+++|+++||+|++|+
T Consensus 1078 ~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~ 1157 (1560)
T PTZ00243 1078 YLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAH 1157 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHH
Confidence 99999999999999999999866555444444444555666677777777777788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000846 226 ETLIRFSNALQKTMELGIKQGFIKGLLMGSM-GMIYVGWAFQAWVGSYL--VTEKGEKGGSIFVAGVSIIMGGLSVLGAL 302 (1255)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~l--v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 302 (1255)
.+.++|.+..+...+...+......+..... .+..+...++.+++... ...+.+++|.+..++.+......++..+.
T Consensus 1158 ~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~ 1237 (1560)
T PTZ00243 1158 LVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLV 1237 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888777666544444443332 22222222222333332 23345788877777777777888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCC--------------------------Ccccc---cCCCccceEEEEeEEEE
Q 000846 303 PNLTAITEAKVAATRIFEMVDRTPAIDTD--------------------------DKMGK---ALSYVRGEIEFRDVYFC 353 (1255)
Q Consensus 303 ~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--------------------------~~~~~---~~~~~~~~i~~~~v~~~ 353 (1255)
..+..++.++.|++||.++++..|+++.. ..... +.++..|.|+|+||+|+
T Consensus 1238 ~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~ 1317 (1560)
T PTZ00243 1238 RQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMR 1317 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEE
Confidence 99999999999999999999754322100 00000 11224578999999999
Q ss_pred cCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccEEeccCCccC
Q 000846 354 YPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLF 433 (1255)
Q Consensus 354 y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 433 (1255)
|+++ .+++|+||||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.||
T Consensus 1318 Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF 1396 (1560)
T PTZ00243 1318 YREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLF 1396 (1560)
T ss_pred eCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccc
Confidence 9753 346999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccC-CCEEEEeCCCC
Q 000846 434 ATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD-PKILLLDEATS 512 (1255)
Q Consensus 434 ~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~-~~illlDEpts 512 (1255)
+|||||||..+ .+++++++++|++.+++++++.++|+|+||.+||+|.+|||||||||||||||+++ |+|||||||||
T Consensus 1397 ~gTIreNIdp~-~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATS 1475 (1560)
T PTZ00243 1397 DGTVRQNVDPF-LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATA 1475 (1560)
T ss_pred cccHHHHhCcc-cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCc
Confidence 99999999865 46889999999999999999999999999999999999999999999999999996 89999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhccCCCChhHHHHHHH
Q 000846 513 ALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQ 584 (1255)
Q Consensus 513 ~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 584 (1255)
+||+++++.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||+++ .++.|+++++.+
T Consensus 1476 aLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~-~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1476 NIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMN-RQSIFHSMVEAL 1546 (1560)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCCHHHHHHHHh
Confidence 99999999999999998889999999999999999999999999999999999999975 368999998765
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-73 Score=635.77 Aligned_cols=535 Identities=23% Similarity=0.291 Sum_probs=469.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 18 LMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMR 97 (1255)
Q Consensus 18 ~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 97 (1255)
++.++++.+ +..++....++++-++.|...... +. .++...+.+.++++++.+++.+++.....+.+.++..++.
T Consensus 25 ~~~v~lfS~-~INiL~L~~~lyMLQVyDRVL~S~--s~--~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~ 99 (580)
T COG4618 25 FIGVGLFSA-VINLLALTGPLYMLQVYDRVLPSR--SV--PTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLN 99 (580)
T ss_pred HHHHHHHHH-HHHHHHHhhhHHHHHHHhhhccCC--Cc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444433 334444445567777888765322 12 4566666677778888899999999999999999999999
Q ss_pred HHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 98 MEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTL 177 (1255)
Q Consensus 98 ~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~ 177 (1255)
..+|.+.++.+..--. .|+=.+- -+|.+.++.+++..-+..+.+..++.++++++|.+++++++++++...
T Consensus 100 ~~v~~a~~~~~l~~~~--------~g~~~Q~-LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~ 170 (580)
T COG4618 100 GPVFAASFSAPLLRRG--------SGDGLQP-LRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAI 170 (580)
T ss_pred cHHHHHHHhhHHhhcC--------CCccccc-hhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876654321 1221222 279999999999988888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000846 178 MFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSM- 256 (1255)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 256 (1255)
+++.+.++-.+..++..++..+...+++..++-..+|.++|+++|+.....++|.+.+.++.....+.+-..+.+....
T Consensus 171 iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr 250 (580)
T COG4618 171 ILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSR 250 (580)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8888888888888888888888899999999999999999999999999999999999999888888777777777666
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccc
Q 000846 257 GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGK 336 (1255)
Q Consensus 257 ~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~ 336 (1255)
.+=......++..|+|++++|++|+|.+++..+.+.....|+.+.+..|..+..++.|++|+.+++...|+..+ .-
T Consensus 251 ~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m 326 (580)
T COG4618 251 ALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RM 326 (580)
T ss_pred HHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CC
Confidence 44455667788899999999999999999999999999999999999999999999999999999987765332 13
Q ss_pred cCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCH
Q 000846 337 ALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHL 416 (1255)
Q Consensus 337 ~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~ 416 (1255)
+.+.++|.+.++++++.=|+. ++++|+|+||++++||.+|||||||||||||.++|.|.++|.+|.|++||-++++++.
T Consensus 327 ~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~ 405 (580)
T COG4618 327 PLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDR 405 (580)
T ss_pred CCCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCH
Confidence 445668999999999976654 5789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHH
Q 000846 417 KWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIAR 496 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lAR 496 (1255)
+.+-++|||.||+..||+|||.|||+-..++.+.++|.+|++.+++||.|.++|+||||.+|+.|..|||||||||+|||
T Consensus 406 e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLAR 485 (580)
T COG4618 406 EQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALAR 485 (580)
T ss_pred HHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHH
Confidence 99999999999999999999999998666678899999999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhcc
Q 000846 497 ALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 497 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
|||.||.+++||||-|+||.+.|..+.++|...+ +|.|+|+||||++.+..+|+|++|++|++...|+.+|++++
T Consensus 486 AlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 486 ALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999999999999999999998885 59999999999999999999999999999999999998874
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-74 Score=713.09 Aligned_cols=501 Identities=24% Similarity=0.381 Sum_probs=366.9
Q ss_pred eEEEEeEEEEcCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecC----------
Q 000846 344 EIEFRDVYFCYPSRP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIR---------- 412 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~---------- 412 (1255)
.|+++|++++|+... ..++|+||||++++||++|||||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 599999999996321 246999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-cccEEeccCC--ccCcc-cHHHHhccCCC---CCCHHHHHHHHHHhchHHHHhcCCCccc---chhcC
Q 000846 413 RLHLK---WLR-SQMGLVNQEP--VLFAT-SITENILFGKD---GASMDDVISAAKAANAHDFITKLPDGYE---TQVGQ 479 (1255)
Q Consensus 413 ~~~~~---~~r-~~i~~v~Q~~--~l~~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~---t~~~~ 479 (1255)
+.+.. .+| ++||||+|+| .++.. ||+||+.++.. .....+.. ..+.+.++.+ |+. .....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~ 164 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM-----VEAKRMLDQV--RIPEAQTILSR 164 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChhhHHhC
Confidence 22222 233 5799999998 57764 99999987531 11222211 1223344444 442 34567
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhh-hcCEEEEEeC
Q 000846 480 LGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-K-GRTTLIIAHRLSTIR-TANLIMVLKA 556 (1255)
Q Consensus 480 ~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~-~~d~i~vl~~ 556 (1255)
...+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++. + |+|+|+|||+++.+. .||||++|++
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~ 244 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence 778999999999999999999999999999999999999999999999885 3 899999999999985 5999999999
Q ss_pred CEEEEecChhHHhccCCCChhH-HHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCCC
Q 000846 557 GKVVESGSHNELMNRGEGGEYY-QMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFS 635 (1255)
Q Consensus 557 G~i~~~g~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1255)
|++++.|+++++...+. ..|. .+... . +. ... ..
T Consensus 245 G~i~~~g~~~~~~~~~~-~~~~~~l~~~------------------------------~-~~-~~~------~~------ 279 (623)
T PRK10261 245 GEAVETGSVEQIFHAPQ-HPYTRALLAA------------------------------V-PQ-LGA------MK------ 279 (623)
T ss_pred CeecccCCHHHhhcCCC-Chhhhhhhhc------------------------------c-Cc-ccc------cc------
Confidence 99999999888754211 0110 00000 0 00 000 00
Q ss_pred CCCcCCCCCcccccCCCCCCCccccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000846 636 PALSVGTPYSYTIQYDPDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFR 715 (1255)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 715 (1255)
.+
T Consensus 280 --------------------------~~---------------------------------------------------- 281 (623)
T PRK10261 280 --------------------------GL---------------------------------------------------- 281 (623)
T ss_pred --------------------------cc----------------------------------------------------
Confidence 00
Q ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhH
Q 000846 716 TDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEA 795 (1255)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~ 795 (1255)
..+ .-+. ...
T Consensus 282 -------------------------------------------------------~~~-~~~~--~~~------------ 291 (623)
T PRK10261 282 -------------------------------------------------------DYP-RRFP--LIS------------ 291 (623)
T ss_pred -------------------------------------------------------cCC-cccc--ccc------------
Confidence 000 0000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000846 796 NVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVI 875 (1255)
Q Consensus 796 ~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ 875 (1255)
. ..
T Consensus 292 ------------------------------------------------------------~--~~--------------- 294 (623)
T PRK10261 292 ------------------------------------------------------------L--EH--------------- 294 (623)
T ss_pred ------------------------------------------------------------c--cc---------------
Confidence 0 00
Q ss_pred chHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 000846 876 NHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILL 955 (1255)
Q Consensus 876 g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 955 (1255)
. .
T Consensus 295 ----------------------------------------------------------------~--~------------ 296 (623)
T PRK10261 295 ----------------------------------------------------------------P--A------------ 296 (623)
T ss_pred ----------------------------------------------------------------c--c------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCccccccccccEEEEEEEEECCCCC--------CCccc
Q 000846 956 FTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRP--------DQMIL 1027 (1255)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~--------~~~vL 1027 (1255)
...+......... ...-|+++||+++|+.+. ..++|
T Consensus 297 -----------------------------~~~~~~~~~~~~~-------~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l 340 (623)
T PRK10261 297 -----------------------------KQEPPIEQDTVVD-------GEPILQVRNLVTRFPLRSGLLNRVTREVHAV 340 (623)
T ss_pred -----------------------------ccCcccccccccC-------CCceEEEeeeEEEEcCCCccccccCCceEEE
Confidence 0000000000000 011389999999996321 23699
Q ss_pred cceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHH---HHhcceEEEccCC--CCCc-ccH
Q 000846 1028 KGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLK---QLRSHIALVSQEP--TLFA-GTI 1101 (1255)
Q Consensus 1028 ~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR~~i~~V~Qdp--~LF~-gTI 1101 (1255)
+||||+|++||++||||+||||||||+++|.|+.+|++|+|.++|.++...+.. .+|++|+||||+| .++. .|+
T Consensus 341 ~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv 420 (623)
T PRK10261 341 EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTV 420 (623)
T ss_pred eeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCH
Confidence 999999999999999999999999999999999999999999999999877643 4678899999998 3665 599
Q ss_pred HHHHhcCCC--CC-CH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEecc
Q 000846 1102 RENIAYGKA--DA-RE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEA 1174 (1255)
Q Consensus 1102 reNl~~g~~--~~-~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEa 1174 (1255)
++|+.++.. .. .. +++.+.++..++. +........+||||||||++|||||+.+|+|||||||
T Consensus 421 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~----------~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEP 490 (623)
T PRK10261 421 GDSIMEPLRVHGLLPGKAAAARVAWLLERVGLL----------PEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEA 490 (623)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCC----------HHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999965310 11 11 2233333333331 0122344567999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhhhcCchhHH-HHh
Q 000846 1175 TSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVALSRGGAYYS-LIK 1246 (1255)
Q Consensus 1175 TSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y~~-l~~ 1246 (1255)
||+||+.+.+.|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|++.|++++++.. +...|.+ ++.
T Consensus 491 ts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~-p~~~~~~~l~~ 565 (623)
T PRK10261 491 VSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFEN-PQHPYTRKLMA 565 (623)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC-CCCHHHHHHHh
Confidence 999999999999999998753 7899999999999876 999999999999999999999864 4555654 443
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-74 Score=625.38 Aligned_cols=491 Identities=30% Similarity=0.450 Sum_probs=416.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000846 82 GLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFF-FCLLF 160 (1255)
Q Consensus 82 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~-~~~~~ 160 (1255)
..++...++...+.+--+.|.|+..+++.|.-+ ..+|.+...+.....-|+..+...+...+..++-+. .+.++
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~-----r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~ 77 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE-----RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVIL 77 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh-----cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345667788888888889999999999999886 444454444444444444444444444444444333 34445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHH
Q 000846 161 SFILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTME 240 (1255)
Q Consensus 161 ~~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~ 240 (1255)
...++|+.+++.++++.++.++............+...++-+++++...+++-+.++||.|+.|+.+..+|...++.+.+
T Consensus 78 ~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~ 157 (497)
T COG5265 78 WRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEK 157 (497)
T ss_pred HhhcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHH
Confidence 56689999999888888777766655555556666777788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 241 LGIKQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIF 319 (1255)
Q Consensus 241 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~ 319 (1255)
...|...-.+++.... .+...........+...+..|.+|.|+++....++.....|+..+......+.+++.-.++.+
T Consensus 158 a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mf 237 (497)
T COG5265 158 AAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMF 237 (497)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHH
Confidence 8888766555544333 223333445555667778889999999999888888889999888888999999999999999
Q ss_pred HHhcCCCCCCCCCcccccCC-CccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 000846 320 EMVDRTPAIDTDDKMGKALS-YVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 398 (1255)
++++.+.+.... +..++.+ ...|.|.|+||+|.|.. .+++|+++||++++|+++|+|||||+||||++++|.|||+
T Consensus 238 dLl~~~~~v~d~-pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD 314 (497)
T COG5265 238 DLLDVEAEVSDA-PDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD 314 (497)
T ss_pred HhhccchhhccC-CCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC
Confidence 999877654322 1223333 34678999999999964 4689999999999999999999999999999999999999
Q ss_pred CCccEEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhc
Q 000846 399 PVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVG 478 (1255)
Q Consensus 399 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~ 478 (1255)
+++|.|.+||+|+++...+.+|+.||+||||..||++|+..||.||+|.++++++..+++.++++++++.+|+||+|.||
T Consensus 315 ~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vg 394 (497)
T COG5265 315 VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVG 394 (497)
T ss_pred CcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCE
Q 000846 479 QLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGK 558 (1255)
Q Consensus 479 ~~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~ 558 (1255)
|+|..|||||||||||||+++++|+||+|||+||+||.+||+.||.+|++..+|+|.++|+|||+++-+||.|+||++|+
T Consensus 395 erglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~ 474 (497)
T COG5265 395 ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGR 474 (497)
T ss_pred hheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhHHhccCCCChhHHHHH
Q 000846 559 VVESGSHNELMNRGEGGEYYQMVE 582 (1255)
Q Consensus 559 i~~~g~~~~l~~~~~~~~~~~~~~ 582 (1255)
|+|.|+|+||+.+ +|.|.+||.
T Consensus 475 i~erg~h~~ll~~--~g~ya~mw~ 496 (497)
T COG5265 475 IVERGTHEELLAA--GGLYAEMWR 496 (497)
T ss_pred EEecCcHHHHHHc--CChHHHHhc
Confidence 9999999999985 799999984
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-74 Score=701.92 Aligned_cols=462 Identities=22% Similarity=0.399 Sum_probs=360.9
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC--CccEEEECCeecCCCCHH-HHh
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP--VEGEVLLDGYKIRRLHLK-WLR 420 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~--~~G~i~~~g~~~~~~~~~-~~r 420 (1255)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+.. ..|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999963 4699999999999999999999999999999999999996 899999999999877654 356
Q ss_pred cccEEeccCCccCcc-cHHHHhccCCCC-----CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHH
Q 000846 421 SQMGLVNQEPVLFAT-SITENILFGKDG-----ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAI 494 (1255)
Q Consensus 421 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~l 494 (1255)
++++||+|++.+|.. |++||+.++... ...++.. ..+.+.++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY-----LRAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 789999999988875 999999886431 1112211 1233455555 56555666778999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhccC
Q 000846 495 ARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNRG 572 (1255)
Q Consensus 495 ARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~ 572 (1255)
||||+.+|++||||||||+||+.++..+.+.|.++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~- 233 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTED- 233 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHH-
Confidence 999999999999999999999999999999998874 4899999999999986 4999999999999887753332100
Q ss_pred CCChhHHHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCcccccCCC
Q 000846 573 EGGEYYQMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDP 652 (1255)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (1255)
+..
T Consensus 234 ------~~~----------------------------------------------------------------------- 236 (506)
T PRK13549 234 ------DII----------------------------------------------------------------------- 236 (506)
T ss_pred ------HHH-----------------------------------------------------------------------
Confidence 000
Q ss_pred CCCCccccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHH
Q 000846 653 DDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFF 732 (1255)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 732 (1255)
..
T Consensus 237 ----------------------------------------------------------~~-------------------- 238 (506)
T PRK13549 237 ----------------------------------------------------------TM-------------------- 238 (506)
T ss_pred ----------------------------------------------------------HH--------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000846 733 LGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQA 812 (1255)
Q Consensus 733 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~ 812 (1255)
++. . +
T Consensus 239 -------------------------------------------~~~--~-~----------------------------- 243 (506)
T PRK13549 239 -------------------------------------------MVG--R-E----------------------------- 243 (506)
T ss_pred -------------------------------------------hhC--c-C-----------------------------
Confidence 000 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHH
Q 000846 813 IFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGL 892 (1255)
Q Consensus 813 ~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~ 892 (1255)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 893 FKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDIS 972 (1255)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 972 (1255)
..
T Consensus 244 -------------------------------------------------~~----------------------------- 245 (506)
T PRK13549 244 -------------------------------------------------LT----------------------------- 245 (506)
T ss_pred -------------------------------------------------cc-----------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHH
Q 000846 973 KGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST 1052 (1255)
Q Consensus 973 ~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKST 1052 (1255)
+ ..+.... +. ...-|+++||+++|+...+.++|+|+||+|++||++||+|+|||||||
T Consensus 246 -------~------~~~~~~~--~~-------~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKST 303 (506)
T PRK13549 246 -------A------LYPREPH--TI-------GEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTE 303 (506)
T ss_pred -------c------ccccccc--CC-------CCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHH
Confidence 0 0000000 00 011389999999995322346999999999999999999999999999
Q ss_pred HHHHHhcccC-CCCceEEECCeecCCCCH-HHHhcceEEEccCC---CCCc-ccHHHHHhcCCC-CC------CHHHHHH
Q 000846 1053 IIGLLERFYD-PLKGSVFMDEQDIRNYNL-KQLRSHIALVSQEP---TLFA-GTIRENIAYGKA-DA------RESEIKK 1119 (1255)
Q Consensus 1053 L~~lL~rl~~-p~~G~I~idG~di~~i~~-~~lR~~i~~V~Qdp---~LF~-gTIreNl~~g~~-~~------~~~ei~~ 1119 (1255)
|+++|+|+++ |++|+|.+||.++...+. +.+|++++||||+| .+|. .|+.||+.++.. .. +.++
T Consensus 304 Llk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--- 380 (506)
T PRK13549 304 LVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA--- 380 (506)
T ss_pred HHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH---
Confidence 9999999999 599999999999875543 45677899999997 3554 699999976521 00 1111
Q ss_pred HHHHhcHHHHHHcccccccc-ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCC
Q 000846 1120 AAVLANAHEFISGMKDGYDT-YCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGR 1197 (1255)
Q Consensus 1120 al~~a~l~~~i~~lp~gldt-~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~ 1197 (1255)
....+.++++.+ |++. ........||||||||++||||++.+|+||||||||++||+.+.+.+.+.|++.. +|+
T Consensus 381 --~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 456 (506)
T PRK13549 381 --ELKTILESIQRL--KVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGV 456 (506)
T ss_pred --HHHHHHHHHHhc--CccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCC
Confidence 112234445544 3432 2345567899999999999999999999999999999999999999999999874 589
Q ss_pred eEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHH
Q 000846 1198 TCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1198 TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl 1233 (1255)
|||+|||+++.+.+ ||++++|++|+++..|+++++.
T Consensus 457 tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 457 AIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred EEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 99999999999865 9999999999999999988873
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-71 Score=686.90 Aligned_cols=535 Identities=16% Similarity=0.171 Sum_probs=440.6
Q ss_pred HHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 670 SQWRLLKINM-PEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHY 748 (1255)
Q Consensus 670 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 748 (1255)
.+++++++.+ +.|+.++++++++++.+......+++++.+++..... .. .....++++.++..++.++..+
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~ 75 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFL------GQ--GSLFSFGGLCLLALLFRIGADI 75 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc------cc--hHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777 7888888888888888887777777777766421100 00 0111233445566677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 749 SFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSW 828 (1255)
Q Consensus 749 ~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~ 828 (1255)
+....+.++..++|.++|+++++.|++||+ ++++|++++|+++|++.++..+.. +..++..++.+++.++++++++|
T Consensus 76 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 152 (555)
T TIGR01194 76 FPAYAGMHIIANLRIALCEKILGAPIEEID--RRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSV 152 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHH--hcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999998 678999999999999999998864 77777888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHH--HHHHHHHHHHhchHHHHHH
Q 000846 829 RLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQK--RILGLFKETLRGPKEESLK 906 (1255)
Q Consensus 829 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~--~~~~~~~~~~~~~~~~~~~ 906 (1255)
.+++++++.+|+.+.......+..++...+.++..++....+.|.+.|++++|+|+.++ ...+++.+..++..+...+
T Consensus 153 ~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
T TIGR01194 153 PMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999888888876666555555555566667777888999999999999999999954 5577888888777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000846 907 HSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILD 986 (1255)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 986 (1255)
..+.......+..++..+..++.++++++. +.+++|.++++..+......++..+...+..++++..+.+|+.++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~ 309 (555)
T TIGR01194 233 EILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGE 309 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555554444444555555555555665543 78999999999999999999999999999999999999999999986
Q ss_pred ccCCCCCC--CCCCcc----ccccccccEEEEEEEEECCCCC--CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHh
Q 000846 987 RRSEIDPD--SPQGRD----IKRQMRGRIELKNVFFAYPTRP--DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLE 1058 (1255)
Q Consensus 987 ~~~~~~~~--~~~~~~----~~~~~~g~I~~~~Vsf~Y~~~~--~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1058 (1255)
.+.+.+.. .+.... .+....+.|+|+||+|+|++.+ ++++|+|+||+|++||++|||||||||||||+++|+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~ 389 (555)
T TIGR01194 310 RFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC 389 (555)
T ss_pred hhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 42211110 010000 1111246799999999997532 236999999999999999999999999999999999
Q ss_pred cccCCCCceEEECCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccc
Q 000846 1059 RFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYD 1138 (1255)
Q Consensus 1059 rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gld 1138 (1255)
|+|+|++|+|.+||+|+++++.+++|+++++|+|||++|++|+++|+ .+++++++++++++.+++++++..+|+|||
T Consensus 390 g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~ 466 (555)
T TIGR01194 390 GLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFS 466 (555)
T ss_pred CCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccC
Confidence 99999999999999999999999999999999999999999999996 567889999999999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHH-h-cCCCeEEEEccCchhhhhcCEEE
Q 000846 1139 TYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEK-M-MMGRTCVVVAHRLSTIQKSDTIA 1216 (1255)
Q Consensus 1139 t~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~-~-~~~~TvI~IaHrl~ti~~~D~I~ 1216 (1255)
|. .+||||||||||||||++++|+|||||||||+||++||+.|++.+.+ . .+++|+|+||||++++..||+|+
T Consensus 467 t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~ 541 (555)
T TIGR01194 467 TT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQII 541 (555)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEE
Confidence 94 78999999999999999999999999999999999999999987743 3 46899999999999999999999
Q ss_pred EEeCCEEEEe
Q 000846 1217 VIKNGRVVEQ 1226 (1255)
Q Consensus 1217 Vl~~G~ive~ 1226 (1255)
||++|+++|.
T Consensus 542 ~l~~G~i~~~ 551 (555)
T TIGR01194 542 KLAAGCIVKD 551 (555)
T ss_pred EEECCEEEEe
Confidence 9999999985
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-73 Score=699.22 Aligned_cols=468 Identities=26% Similarity=0.444 Sum_probs=357.1
Q ss_pred eEEEEeEEEEcCCC-CCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeecCCCCHH
Q 000846 344 EIEFRDVYFCYPSR-PDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP-----VEGEVLLDGYKIRRLHLK 417 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~~~ 417 (1255)
.|+++|++++|+.. .+.++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|+++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124699999999999999999999999999999999999986 799999999999876643
Q ss_pred H---Hh-cccEEeccCCc--cCc-ccHHHHhccCC---CCCCHHHHHHHHHHhchHHHHhcCCCcccc---hhcCCCCCC
Q 000846 418 W---LR-SQMGLVNQEPV--LFA-TSITENILFGK---DGASMDDVISAAKAANAHDFITKLPDGYET---QVGQLGFQM 484 (1255)
Q Consensus 418 ~---~r-~~i~~v~Q~~~--l~~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t---~~~~~g~~L 484 (1255)
. +| +++|||+|+|. ++. .|+++|+.++. ...+.++.. ..+.+.++.+ |++. .......+|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAAR-----GEILNCLDRV--GIRQAAKRLTDYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChHHHHhhCCccc
Confidence 2 33 57999999985 444 48999986421 111121111 1123334444 4432 245667899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEE
Q 000846 485 SGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVE 561 (1255)
Q Consensus 485 SgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~ 561 (1255)
|||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. .|+|+|+|||+++.+. .||+|++|++|++++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998874 3799999999999986 599999999999999
Q ss_pred ecChhHHhccCCCChhHHHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCCCCCCcCC
Q 000846 562 SGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVG 641 (1255)
Q Consensus 562 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (1255)
.|+++++..... .
T Consensus 238 ~g~~~~~~~~~~-------------------------------------~------------------------------ 250 (529)
T PRK15134 238 QNRAATLFSAPT-------------------------------------H------------------------------ 250 (529)
T ss_pred eCCHHHHhhCCC-------------------------------------C------------------------------
Confidence 988776643100 0
Q ss_pred CCCcccccCCCCCCCccccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhh
Q 000846 642 TPYSYTIQYDPDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEI 721 (1255)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 721 (1255)
. +. ..+
T Consensus 251 -----------------~----------------------~~---------------------------~~~-------- 256 (529)
T PRK15134 251 -----------------P----------------------YT---------------------------QKL-------- 256 (529)
T ss_pred -----------------H----------------------HH---------------------------HHH--------
Confidence 0 00 000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHH
Q 000846 722 KSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSL 801 (1255)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~ 801 (1255)
+.. . +
T Consensus 257 -------------------------------------------------------~~~-~-~------------------ 261 (529)
T PRK15134 257 -------------------------------------------------------LNS-E-P------------------ 261 (529)
T ss_pred -------------------------------------------------------HHh-C-c------------------
Confidence 000 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHH
Q 000846 802 VGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTIT 881 (1255)
Q Consensus 802 ~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr 881 (1255)
T Consensus 262 -------------------------------------------------------------------------------- 261 (529)
T PRK15134 262 -------------------------------------------------------------------------------- 261 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 000846 882 AFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVI 961 (1255)
Q Consensus 882 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1255)
T Consensus 262 -------------------------------------------------------------------------------- 261 (529)
T PRK15134 262 -------------------------------------------------------------------------------- 261 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCccccccccccEEEEEEEEECCCC--------CCCccccceeEE
Q 000846 962 AEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTR--------PDQMILKGLSLK 1033 (1255)
Q Consensus 962 ~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~--------~~~~vL~~vs~~ 1033 (1255)
+ ..+. ... .. ...-|+++||+++|+.. .+.++|+|+||+
T Consensus 262 ------------------~------~~~~-~~~-~~-------~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~ 308 (529)
T PRK15134 262 ------------------S------GDPV-PLP-EP-------ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFT 308 (529)
T ss_pred ------------------c------cccc-ccC-CC-------CCCcccccCcEEEeecCccccccccccceeeecceeE
Confidence 0 0000 000 00 01138999999999621 124699999999
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHH---HhcceEEEccCC--CCCc-ccHHHHHhc
Q 000846 1034 IEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ---LRSHIALVSQEP--TLFA-GTIRENIAY 1107 (1255)
Q Consensus 1034 I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---lR~~i~~V~Qdp--~LF~-gTIreNl~~ 1107 (1255)
|++||++||+|+||||||||+++|+|+++ ++|+|.+||.++...+... +|++|+||||+| .+|. .|++||+.+
T Consensus 309 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~ 387 (529)
T PRK15134 309 LRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEE 387 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHH
Confidence 99999999999999999999999999984 8999999999998766543 478899999998 3665 599999976
Q ss_pred CCC----CCCHHHHHHHHHHhcHHHHHHccccccc-cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHH
Q 000846 1108 GKA----DARESEIKKAAVLANAHEFISGMKDGYD-TYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVS 1182 (1255)
Q Consensus 1108 g~~----~~~~~ei~~al~~a~l~~~i~~lp~gld-t~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~t 1182 (1255)
+.. ..+..+.. ..+.+++..+ |++ ........+||||||||++|||||+.+|+||||||||++||+.+
T Consensus 388 ~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~ 460 (529)
T PRK15134 388 GLRVHQPTLSAAQRE-----QQVIAVMEEV--GLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTV 460 (529)
T ss_pred HHHhccccCChHHHH-----HHHHHHHHHc--CCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHH
Confidence 421 01111111 1122333332 332 12344567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1183 ESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1183 e~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 461 ~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 516 (529)
T PRK15134 461 QAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAA 516 (529)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcC
Confidence 9999999998753 7899999999999865 999999999999999999999864
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-70 Score=738.68 Aligned_cols=499 Identities=19% Similarity=0.246 Sum_probs=415.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 72 IGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYL 151 (1255)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~ 151 (1255)
++..++.+++.+++.+.+.+.+.++|.++++++++.|+.||++ .++|+++||+++|++.+++.+...+..++..+
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-----~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~ 1010 (1490)
T TIGR01271 936 DSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT-----MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLT 1010 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566778888899999999999999999999999999997 66679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHH
Q 000846 152 STFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRF 231 (1255)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~ 231 (1255)
+.+++.++++++++|++++++++++++++++..++.+..++..+......+...+.+.|+++|+.+||+|++|+.+.+++
T Consensus 1011 ~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~ 1090 (1490)
T TIGR01271 1011 LIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLF 1090 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHH
Confidence 99999999999999988776665555555566667676676666677777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 232 SNALQKTMELGIKQGFIKGLLMGSM-G--MIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAI 308 (1255)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (1255)
.+..+...+..........+..... . ......++.++++.. ..+.|.+..++.+......++..++..+..+
T Consensus 1091 ~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~l 1165 (1490)
T TIGR01271 1091 HKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNSSIDV 1165 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988765444333322222222111 1 111111112222222 2344544444445555666777777788899
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCc----------------ccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecC
Q 000846 309 TEAKVAATRIFEMVDRTPAIDTDDK----------------MGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPA 372 (1255)
Q Consensus 309 ~~~~~a~~ri~~~l~~~~~~~~~~~----------------~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~ 372 (1255)
..++.|++||.++++.+++...... ..++.|+..|.|+|+||+|+|+.. .+++|+|+||+|+|
T Consensus 1166 e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~ 1244 (1490)
T TIGR01271 1166 DGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEG 1244 (1490)
T ss_pred HHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcC
Confidence 9999999999999987654321100 011224567899999999999753 35799999999999
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHH
Q 000846 373 GKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDD 452 (1255)
Q Consensus 373 g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~ 452 (1255)
||++||||+||||||||+++|+|+++ ++|+|.|||+|+++++.+.+|++|+||||+|.||+||||+||... ...++++
T Consensus 1245 GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~-~~~tdee 1322 (1490)
T TIGR01271 1245 GQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY-EQWSDEE 1322 (1490)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc-cCCCHHH
Confidence 99999999999999999999999997 799999999999999999999999999999999999999999754 3578999
Q ss_pred HHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC
Q 000846 453 VISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKG 532 (1255)
Q Consensus 453 ~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~ 532 (1255)
++++++.+++++++.++|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..++
T Consensus 1323 i~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~ 1402 (1490)
T TIGR01271 1323 IWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSN 1402 (1490)
T ss_pred HHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred CeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhccCCCChhHHHHHHHh
Q 000846 533 RTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQ 585 (1255)
Q Consensus 533 ~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 585 (1255)
+|+|+||||++++..||+|+||++|+|+|.|+|++|++ .++.|+++++.+.
T Consensus 1403 ~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~--~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1403 CTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN--ETSLFKQAMSAAD 1453 (1490)
T ss_pred CEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc--CCcHHHHHHHHhC
Confidence 99999999999999999999999999999999999997 4689999987654
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-73 Score=693.08 Aligned_cols=459 Identities=20% Similarity=0.347 Sum_probs=355.9
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHH-Hhcc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW-LRSQ 422 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 422 (1255)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 35999999999999999999999999999999999999999999999999998777554 4567
Q ss_pred cEEeccCCccCcc-cHHHHhccCCCCC---------CHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHH
Q 000846 423 MGLVNQEPVLFAT-SITENILFGKDGA---------SMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRI 492 (1255)
Q Consensus 423 i~~v~Q~~~l~~~-ti~~ni~~~~~~~---------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri 492 (1255)
++||+|++.++.. |++||+.++.... ..++.. ..+.+.++.+ |+.........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMR-----VRAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 9999999988876 9999998764210 111111 1233445555 555555667789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 493 AIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 493 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 99999999999999999999999999999999998874 4899999999999986 599999999999988876554321
Q ss_pred cCCCChhHHHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCcccccC
Q 000846 571 RGEGGEYYQMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQY 650 (1255)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (1255)
. .+.+ .
T Consensus 235 ~-------~~~~----------------------------~--------------------------------------- 240 (510)
T PRK09700 235 D-------DIVR----------------------------L--------------------------------------- 240 (510)
T ss_pred H-------HHHH----------------------------H---------------------------------------
Confidence 0 0000 0
Q ss_pred CCCCCCccccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHH
Q 000846 651 DPDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSL 730 (1255)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 730 (1255)
+
T Consensus 241 --------------------------------------------------------------~----------------- 241 (510)
T PRK09700 241 --------------------------------------------------------------M----------------- 241 (510)
T ss_pred --------------------------------------------------------------h-----------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000846 731 FFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLV 810 (1255)
Q Consensus 731 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~ 810 (1255)
+. .. .
T Consensus 242 ----------------------------------------------~~--~~-~-------------------------- 246 (510)
T PRK09700 242 ----------------------------------------------VG--RE-L-------------------------- 246 (510)
T ss_pred ----------------------------------------------cC--CC-c--------------------------
Confidence 00 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHH
Q 000846 811 QAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRIL 890 (1255)
Q Consensus 811 ~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~ 890 (1255)
..
T Consensus 247 ------------------------------------------~~------------------------------------ 248 (510)
T PRK09700 247 ------------------------------------------QN------------------------------------ 248 (510)
T ss_pred ------------------------------------------cc------------------------------------
Confidence 00
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 891 GLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSD 970 (1255)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 970 (1255)
T Consensus 249 -------------------------------------------------------------------------------- 248 (510)
T PRK09700 249 -------------------------------------------------------------------------------- 248 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHcccCCCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCH
Q 000846 971 ISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGK 1050 (1255)
Q Consensus 971 ~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGK 1050 (1255)
+ .....+. ..... ....|+++|+++.|. .+|+|+||+|++||++||+|||||||
T Consensus 249 ---------~---~~~~~~~--~~~~~-------~~~~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGK 302 (510)
T PRK09700 249 ---------R---FNAMKEN--VSNLA-------HETVFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGR 302 (510)
T ss_pred ---------c---ccccccc--cccCC-------CCcEEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCH
Confidence 0 0000000 00000 011499999999762 28999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCceEEECCeecCCCCH-HHHhcceEEEccCC---CCCc-ccHHHHHhcCCCC-----------CCH
Q 000846 1051 STIIGLLERFYDPLKGSVFMDEQDIRNYNL-KQLRSHIALVSQEP---TLFA-GTIRENIAYGKAD-----------ARE 1114 (1255)
Q Consensus 1051 STL~~lL~rl~~p~~G~I~idG~di~~i~~-~~lR~~i~~V~Qdp---~LF~-gTIreNl~~g~~~-----------~~~ 1114 (1255)
|||+++|+|+++|++|+|.++|.++...+. ..+|++|+||||++ .+|. -|++||+.++... ...
T Consensus 303 STLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 382 (510)
T PRK09700 303 TELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHE 382 (510)
T ss_pred HHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccCh
Confidence 999999999999999999999999876544 45678999999984 5675 5999999865310 011
Q ss_pred HHHHHHHHHhcHHHHHHccccccc-cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh
Q 000846 1115 SEIKKAAVLANAHEFISGMKDGYD-TYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKM 1193 (1255)
Q Consensus 1115 ~ei~~al~~a~l~~~i~~lp~gld-t~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~ 1193 (1255)
.+ ....+.+.++.+ |+. .........||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|++.
T Consensus 383 ~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l 455 (510)
T PRK09700 383 VD-----EQRTAENQRELL--ALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQL 455 (510)
T ss_pred HH-----HHHHHHHHHHhc--CCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHH
Confidence 11 111223444433 342 2234455679999999999999999999999999999999999999999999986
Q ss_pred c-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHH
Q 000846 1194 M-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNE 1231 (1255)
Q Consensus 1194 ~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~e 1231 (1255)
. +|+|+|+|||+++.+.. ||+|++|++|++++.+++.+
T Consensus 456 ~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 456 ADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRD 495 (510)
T ss_pred HHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecCcc
Confidence 4 58899999999998864 99999999999999887644
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-70 Score=676.58 Aligned_cols=533 Identities=17% Similarity=0.188 Sum_probs=435.6
Q ss_pred chHHHHhhhC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 000846 3 GNDGLFRYAD-GKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVE 81 (1255)
Q Consensus 3 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1255)
..++++++++ +++ ..++++++++++.++.....+++++.+++..... . ... ...+++++++.+++.++.
T Consensus 4 ~~~~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-----~-~~~---~~~~~~~~~~~~~~~~~~ 73 (555)
T TIGR01194 4 AIGEILALLRSPFP-AITAFSIALGLAGGLAIIALLASINNAIHEENFL-----G-QGS---LFSFGGLCLLALLFRIGA 73 (555)
T ss_pred hHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----c-chH---HHHHHHHHHHHHHHHHHH
Confidence 3567888876 544 4455666666666666666667778777632100 0 111 112333455667788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 82 GLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFS 161 (1255)
Q Consensus 82 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (1255)
.++.+..+.++..++|.++|++++++|+.||++ .++|++++|+++|++.+++++.. ++.++..++.+++.++++
T Consensus 74 ~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-----~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l 147 (555)
T TIGR01194 74 DIFPAYAGMHIIANLRIALCEKILGAPIEEIDR-----RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYL 147 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHh-----cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999997 67789999999999999999864 778888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH--HHHHHHHHHHHHHH
Q 000846 162 FILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEH--ETLIRFSNALQKTM 239 (1255)
Q Consensus 162 ~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~--~~~~~~~~~~~~~~ 239 (1255)
++++|.+++++++++|+.+++..++.++.++...+.++..++.++.+.|.+.|++++|+|+.++ .+.+++.+..++..
T Consensus 148 ~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~ 227 (555)
T TIGR01194 148 AYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIA 227 (555)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999988888888877777777788888888889999999999999999999999954 55778888888877
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 240 ELGIKQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRI 318 (1255)
Q Consensus 240 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri 318 (1255)
+...+.....+...... .+.....++.+++|++. +.++.|.++++..+......|+..+...+..+++++.+++|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri 304 (555)
T TIGR01194 228 DLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRL 304 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666555444333322 22233333444555443 688999999999999999999999999999999999999999
Q ss_pred HHHhcCCCC--CCC--CCcccc---cCCCccceEEEEeEEEEcCCCC--CCccccceeEEecCCCEEEEEcCCCCcHHHH
Q 000846 319 FEMVDRTPA--IDT--DDKMGK---ALSYVRGEIEFRDVYFCYPSRP--DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTT 389 (1255)
Q Consensus 319 ~~~l~~~~~--~~~--~~~~~~---~~~~~~~~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl 389 (1255)
.++++.+++ ... ...... ++....+.|+++||+|+|++.+ ..++|+|+||++++||++|||||||||||||
T Consensus 305 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl 384 (555)
T TIGR01194 305 ADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTL 384 (555)
T ss_pred HHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHH
Confidence 999863211 110 000000 1112246799999999997532 2369999999999999999999999999999
Q ss_pred HHHHhcccCCCccEEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcC
Q 000846 390 IALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKL 469 (1255)
Q Consensus 390 ~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l 469 (1255)
+++|+|+++|++|+|.+||.++++++.+++|++++||+|||++|++|+++|+ .++.++++++++++.+++++++..+
T Consensus 385 ~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~l 461 (555)
T TIGR01194 385 AKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIE 461 (555)
T ss_pred HHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhccc
Confidence 9999999999999999999999999999999999999999999999999995 3567788999999999999999999
Q ss_pred CCcccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hh-cCCCeEEEEecCchhhhh
Q 000846 470 PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAID-KV-SKGRTTLIIAHRLSTIRT 547 (1255)
Q Consensus 470 ~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~-~~-~~~~t~i~itH~~~~~~~ 547 (1255)
|+|++|. .+||||||||++||||++++|+|||||||||+||+++++.+.+.+. .. .+++|+|+||||++++..
T Consensus 462 p~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~ 536 (555)
T TIGR01194 462 DGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFEL 536 (555)
T ss_pred ccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHh
Confidence 9999994 7899999999999999999999999999999999999999988764 34 468999999999999999
Q ss_pred cCEEEEEeCCEEEEe
Q 000846 548 ANLIMVLKAGKVVES 562 (1255)
Q Consensus 548 ~d~i~vl~~G~i~~~ 562 (1255)
||+|++|++|+++|.
T Consensus 537 ~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 537 ADQIIKLAAGCIVKD 551 (555)
T ss_pred CCEEEEEECCEEEEe
Confidence 999999999999875
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-72 Score=688.28 Aligned_cols=454 Identities=22% Similarity=0.386 Sum_probs=354.8
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHH-Hhcc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW-LRSQ 422 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 422 (1255)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 46999999999999999999999999999999999999999999999999987655433 4678
Q ss_pred cEEeccCCccCcc-cHHHHhccCCCC------CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHH
Q 000846 423 MGLVNQEPVLFAT-SITENILFGKDG------ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIA 495 (1255)
Q Consensus 423 i~~v~Q~~~l~~~-ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lA 495 (1255)
++||+|++.++.. |++||+.++... ...++.. ..+.+.++.+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMY-----AEADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 9999999988875 999999986421 1111111 1223445554 555555666789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhccCC
Q 000846 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNRGE 573 (1255)
Q Consensus 496 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~~ 573 (1255)
|||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-- 231 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTED-- 231 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHH--
Confidence 99999999999999999999999999999998874 4789999999999986 5999999999999887653332100
Q ss_pred CChhHHHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCcccccCCCC
Q 000846 574 GGEYYQMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDPD 653 (1255)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (1255)
.+. .
T Consensus 232 -----~~~-----------------------------~------------------------------------------ 235 (501)
T PRK10762 232 -----SLI-----------------------------E------------------------------------------ 235 (501)
T ss_pred -----HHH-----------------------------H------------------------------------------
Confidence 000 0
Q ss_pred CCCccccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHH
Q 000846 654 DDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFL 733 (1255)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 733 (1255)
.
T Consensus 236 ----------------------------------------------------------~--------------------- 236 (501)
T PRK10762 236 ----------------------------------------------------------M--------------------- 236 (501)
T ss_pred ----------------------------------------------------------H---------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000846 734 GVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAI 813 (1255)
Q Consensus 734 ~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~ 813 (1255)
++. ..
T Consensus 237 ------------------------------------------~~~--~~------------------------------- 241 (501)
T PRK10762 237 ------------------------------------------MVG--RK------------------------------- 241 (501)
T ss_pred ------------------------------------------hcC--CC-------------------------------
Confidence 000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHH
Q 000846 814 FGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLF 893 (1255)
Q Consensus 814 ~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~ 893 (1255)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 894 KETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISK 973 (1255)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1255)
.
T Consensus 242 ------------------------------------------------~------------------------------- 242 (501)
T PRK10762 242 ------------------------------------------------L------------------------------- 242 (501)
T ss_pred ------------------------------------------------c-------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHcccCCCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHH
Q 000846 974 GSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTI 1053 (1255)
Q Consensus 974 ~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL 1053 (1255)
. ...+.... +. ..-.|+++|+++ ++|+|+||+|++||++||+|+||||||||
T Consensus 243 --------~---~~~~~~~~--~~-------~~~~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTL 294 (501)
T PRK10762 243 --------E---DQYPRLDK--AP-------GEVRLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTEL 294 (501)
T ss_pred --------c---cccccccc--CC-------CCcEEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHH
Confidence 0 00000000 00 011388999984 26999999999999999999999999999
Q ss_pred HHHHhcccCCCCceEEECCeecCCCCH-HHHhcceEEEccCC---CCC-cccHHHHHhcCCCC--------CCHHHHHHH
Q 000846 1054 IGLLERFYDPLKGSVFMDEQDIRNYNL-KQLRSHIALVSQEP---TLF-AGTIRENIAYGKAD--------ARESEIKKA 1120 (1255)
Q Consensus 1054 ~~lL~rl~~p~~G~I~idG~di~~i~~-~~lR~~i~~V~Qdp---~LF-~gTIreNl~~g~~~--------~~~~ei~~a 1120 (1255)
+++|.|+++|++|+|.+||.++...+. +.+|++|+||||+| .+| ..|++||+.++... .+.++.
T Consensus 295 l~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--- 371 (501)
T PRK10762 295 MKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE--- 371 (501)
T ss_pred HHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH---
Confidence 999999999999999999999987665 34678899999997 355 46999999764210 111111
Q ss_pred HHHhcHHHHHHccccccc-cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCe
Q 000846 1121 AVLANAHEFISGMKDGYD-TYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRT 1198 (1255)
Q Consensus 1121 l~~a~l~~~i~~lp~gld-t~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~T 1198 (1255)
...+.+++..+ |++ .........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +|+|
T Consensus 372 --~~~~~~~l~~~--~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~t 447 (501)
T PRK10762 372 --QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLS 447 (501)
T ss_pred --HHHHHHHHHhc--CCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCE
Confidence 12233444443 342 23455667899999999999999999999999999999999999999999999875 5889
Q ss_pred EEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHH
Q 000846 1199 CVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1199 vI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl 1233 (1255)
+|+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 448 viivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 448 IILVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred EEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 9999999999865 9999999999999999887763
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-70 Score=612.03 Aligned_cols=528 Identities=25% Similarity=0.313 Sum_probs=454.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000846 692 SIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMT 771 (1255)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 771 (1255)
+.+..++....+.+.-+..|.... +....+...+.++.+++.++..++..++...+.+.+.++...+...+|....+
T Consensus 32 S~~INiL~L~~~lyMLQVyDRVL~---S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~ 108 (580)
T COG4618 32 SAVINLLALTGPLYMLQVYDRVLP---SRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFS 108 (580)
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 333344444444444444444432 22334555666677778888999999999999999999999999999999987
Q ss_pred CCccccccCCCChHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 772 FEIGWFDQEDNTSAAICARLATEANVVRSLVGDR-MSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNV 850 (1255)
Q Consensus 772 ~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~-l~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~ 850 (1255)
++.. .+..|+=.+-+ +|.+.++.++... +..++...+ +-+++.++|.+++++.++.++...+++...++-..
T Consensus 109 ~~l~-----~~~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW-~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~ 181 (580)
T COG4618 109 APLL-----RRGSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPW-MPLYLAVIFLFHPWLGLIALAGAIILVVLALLNER 181 (580)
T ss_pred hHHh-----hcCCCccccch-hhHHHHHHHHcCCCcchhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654 22333322222 7999999998764 344444443 44556777888888999888888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 851 LMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAY 930 (1255)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1255)
..++..++..+.....+.+..-+.+|.++|++.|+.....++|.+...++.....+..-..+....++..+-.+.+..++
T Consensus 182 ~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iL 261 (580)
T COG4618 182 ATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVL 261 (580)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777778888899999999999999999999999999999988888888888888888899999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCccccccccccEE
Q 000846 931 WYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIE 1010 (1255)
Q Consensus 931 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~g~I~ 1010 (1255)
..|++|+..|++|.|.+++.-..+.....|+......|..+..+..+.+|+.++++..|+..+.- +.|. .+|.+.
T Consensus 262 g~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m----~LP~-P~g~L~ 336 (580)
T COG4618 262 GLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERM----PLPA-PQGALS 336 (580)
T ss_pred hcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCC----CCCC-CCceee
Confidence 99999999999999999988888888899999999999999999999999999998776544321 1122 468999
Q ss_pred EEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceEEE
Q 000846 1011 LKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALV 1090 (1255)
Q Consensus 1011 ~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V 1090 (1255)
++++++.-|+. ++|+|+|+||+++|||-+|||||||||||||.++|.|.++|++|+|++||-|+++.+.+++=++|||.
T Consensus 337 Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYL 415 (580)
T COG4618 337 VERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYL 415 (580)
T ss_pred EeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcC
Confidence 99999977754 57899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 000846 1091 SQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILL 1170 (1255)
Q Consensus 1091 ~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILl 1170 (1255)
|||..||+|||+|||+-.+++.+++.|.+|++.+++||.|.++|+||||.|||+|..|||||||||+||||++.+|++++
T Consensus 416 PQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvV 495 (580)
T COG4618 416 PQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVV 495 (580)
T ss_pred cccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEE
Confidence 99999999999999987777889999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1171 LDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1171 LDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
||||-|+||.+-|+.+.++|.+.+ +|+|+|+||||++.+..+|+|+||++|++..+|+-+|.+++
T Consensus 496 LDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 496 LDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred ecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999999999999876 69999999999999999999999999999999999999875
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-72 Score=689.92 Aligned_cols=456 Identities=24% Similarity=0.460 Sum_probs=349.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhccc--CCCccEEEEC---------------
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFY--DPVEGEVLLD--------------- 407 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~--~~~~G~i~~~--------------- 407 (1255)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 478999999963 35999999999999999999999999999999999996 7999999997
Q ss_pred --------CeecC-------CCC---HHHHhcccEEeccC-CccCcc-cHHHHhccCCC--CCCHHHHHHHHHHhchHHH
Q 000846 408 --------GYKIR-------RLH---LKWLRSQMGLVNQE-PVLFAT-SITENILFGKD--GASMDDVISAAKAANAHDF 465 (1255)
Q Consensus 408 --------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~ 465 (1255)
|.++. ..+ ...+|+.++||+|+ +.+|.. |++||+.++.. ....++.. ..+.+.
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~ 152 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAV-----GRAVDL 152 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHH
Confidence 33221 111 13457789999998 577764 99999987532 11122211 122344
Q ss_pred HhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCch
Q 000846 466 ITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLS 543 (1255)
Q Consensus 466 i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~ 543 (1255)
++.+ |++........+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|+++. .|+|||+|||+++
T Consensus 153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 5555 56555666778999999999999999999999999999999999999999999999873 3899999999999
Q ss_pred hhh-hcCEEEEEeCCEEEEecChhHHhccCCCChhHHHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCccc
Q 000846 544 TIR-TANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMR 622 (1255)
Q Consensus 544 ~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (1255)
.+. .||+|++|++|++++.|+++++... + .
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-----~---------------------------------~----------- 261 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTPDEVVAV-----F---------------------------------M----------- 261 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecCHHHHHHH-----H---------------------------------H-----------
Confidence 986 5999999999999876654333110 0 0
Q ss_pred CCCCCCCCCCCCCCCCcCCCCCcccccCCCCCCCccccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHH
Q 000846 623 SSAASTPALNPFSPALSVGTPYSYTIQYDPDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPIN 702 (1255)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1255)
T Consensus 262 -------------------------------------------------------------------------------- 261 (520)
T TIGR03269 262 -------------------------------------------------------------------------------- 261 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCC
Q 000846 703 AYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDN 782 (1255)
Q Consensus 703 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~ 782 (1255)
. .
T Consensus 262 ---------------------------------------------------------------------------~--~- 263 (520)
T TIGR03269 262 ---------------------------------------------------------------------------E--G- 263 (520)
T ss_pred ---------------------------------------------------------------------------h--h-
Confidence 0 0
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 783 TSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKA 862 (1255)
Q Consensus 783 ~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~ 862 (1255)
+ ..
T Consensus 264 ---------------------------------------------~------------------------~~-------- 266 (520)
T TIGR03269 264 ---------------------------------------------V------------------------SE-------- 266 (520)
T ss_pred ---------------------------------------------c------------------------hh--------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 000846 863 QKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELI 942 (1255)
Q Consensus 863 ~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 942 (1255)
T Consensus 267 -------------------------------------------------------------------------------- 266 (520)
T TIGR03269 267 -------------------------------------------------------------------------------- 266 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCccccccccccEEEEEEEEECCC--
Q 000846 943 TPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPT-- 1020 (1255)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~-- 1020 (1255)
. .... .. +. ...-|+++||+++|++
T Consensus 267 ----------------------------~--------------~~~~---~~-~~-------~~~~l~~~~l~~~~~~~~ 293 (520)
T TIGR03269 267 ----------------------------V--------------EKEC---EV-EV-------GEPIIKVRNVSKRYISVD 293 (520)
T ss_pred ----------------------------h--------------cccc---cc-CC-------CCceEEEeccEEEeccCC
Confidence 0 0000 00 00 0114999999999963
Q ss_pred CCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEEC-Ce---ecCCCC---HHHHhcceEEEccC
Q 000846 1021 RPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMD-EQ---DIRNYN---LKQLRSHIALVSQE 1093 (1255)
Q Consensus 1021 ~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~id-G~---di~~i~---~~~lR~~i~~V~Qd 1093 (1255)
+.+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |. ++...+ ...+|++|+||||+
T Consensus 294 ~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~ 373 (520)
T TIGR03269 294 RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQE 373 (520)
T ss_pred CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccC
Confidence 112469999999999999999999999999999999999999999999996 64 334332 23467789999999
Q ss_pred CCCCc-ccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHcccccccc-----ccCCCCCCCChHHHHHHHHHHHHccCC
Q 000846 1094 PTLFA-GTIRENIAYGKA-DARESEIKKAAVLANAHEFISGMKDGYDT-----YCGERGVQLSGGQKQRIALARAILKNP 1166 (1255)
Q Consensus 1094 p~LF~-gTIreNl~~g~~-~~~~~ei~~al~~a~l~~~i~~lp~gldt-----~vge~G~~LSgGQkQrlalARALlr~p 1166 (1255)
+.+|. .|++||+.++.. ....++. ...+.+++..+ |++. .......+||||||||++|||||+.+|
T Consensus 374 ~~l~~~~tv~e~l~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p 446 (520)
T TIGR03269 374 YDLYPHRTVLDNLTEAIGLELPDELA-----RMKAVITLKMV--GFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEP 446 (520)
T ss_pred cccCCCCcHHHHHHHHHHcCCCHHHH-----HHHHHHHHHhC--CCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 98887 599999975311 1111111 11122333332 2321 234455679999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000846 1167 SILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1167 ~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
+||||||||++||+.+.+.+.+.|++.. .+.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 447 ~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 447 RIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999875 27899999999999875 99999999999999999999865
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-71 Score=679.87 Aligned_cols=465 Identities=21% Similarity=0.368 Sum_probs=358.2
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHh-cc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLR-SQ 422 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r-~~ 422 (1255)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....+ ..
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5999999999963 3599999999999999999999999999999999999999999999999999877665544 57
Q ss_pred cEEeccCCccCcc-cHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccC
Q 000846 423 MGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501 (1255)
Q Consensus 423 i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~ 501 (1255)
++||+|++.++.. |++||+.++.... .+.. ..+.+.+..+ |++........+||||||||++|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKR--QASM-----QKMKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccc--hHHH-----HHHHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999998876 9999999875321 1111 1123344444 555555666789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhccCCCChhHH
Q 000846 502 PKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNRGEGGEYYQ 579 (1255)
Q Consensus 502 ~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 579 (1255)
|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++... .
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-------~ 231 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD-------D 231 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHH-------H
Confidence 99999999999999999999999998874 4899999999999985 5999999999999998887765321 0
Q ss_pred HHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCcccccCCCCCCCccc
Q 000846 580 MVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDPDDDSLGD 659 (1255)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1255)
..+... . . . . .. .
T Consensus 232 ~~~~~~--~---~------------------~----~-----------~~-----------------------------~ 244 (510)
T PRK15439 232 IIQAIT--P---A------------------A----R-----------EK-----------------------------S 244 (510)
T ss_pred HHHHHh--C---c------------------c----c-----------cc-----------------------------c
Confidence 000000 0 0 0 0 00 0
Q ss_pred cccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHH
Q 000846 660 RIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLN 739 (1255)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1255)
T Consensus 245 -------------------------------------------------------------------------------- 244 (510)
T PRK15439 245 -------------------------------------------------------------------------------- 244 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 740 FISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFS 819 (1255)
Q Consensus 740 ~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~ 819 (1255)
+ . ..
T Consensus 245 ----------------------------------~---~--~~------------------------------------- 248 (510)
T PRK15439 245 ----------------------------------L---S--AS------------------------------------- 248 (510)
T ss_pred ----------------------------------c---c--cc-------------------------------------
Confidence 0 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhc
Q 000846 820 YIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRG 899 (1255)
Q Consensus 820 ~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~ 899 (1255)
T Consensus 249 -------------------------------------------------------------------------------- 248 (510)
T PRK15439 249 -------------------------------------------------------------------------------- 248 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 900 PKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVR 979 (1255)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 979 (1255)
.
T Consensus 249 -------------------------------------------------------------------------------~ 249 (510)
T PRK15439 249 -------------------------------------------------------------------------------Q 249 (510)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred HHHHHHcccCCCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc
Q 000846 980 SVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 980 ri~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
+. . ...+.. ....+. .+.-|+++|++. .+|+|+||+|++||++||+|+||||||||+++|.|
T Consensus 250 ~~-~-~~~~~~-~~~~~~-------~~~~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G 311 (510)
T PRK15439 250 KL-W-LELPGN-RRQQAA-------GAPVLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYG 311 (510)
T ss_pred cc-c-cccccc-ccccCC-------CCceEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 00 0 000000 000000 011389999983 15999999999999999999999999999999999
Q ss_pred ccCCCCceEEECCeecCCCCHHH-HhcceEEEccCC---CCCc-ccHHHHHhcCC----CC-CCHHHHHHHHHHhcHHHH
Q 000846 1060 FYDPLKGSVFMDEQDIRNYNLKQ-LRSHIALVSQEP---TLFA-GTIRENIAYGK----AD-ARESEIKKAAVLANAHEF 1129 (1255)
Q Consensus 1060 l~~p~~G~I~idG~di~~i~~~~-lR~~i~~V~Qdp---~LF~-gTIreNl~~g~----~~-~~~~ei~~al~~a~l~~~ 1129 (1255)
+.+|++|+|.+||.++...+... .|++|+||||++ .+|. .|+.+|+.... +. ....+. ...+.++
T Consensus 312 l~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~ 386 (510)
T PRK15439 312 LRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERY 386 (510)
T ss_pred CCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHH
Confidence 99999999999999998776654 467899999996 3665 59999985320 10 011111 1123344
Q ss_pred HHccccccc-cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCch
Q 000846 1130 ISGMKDGYD-TYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLS 1207 (1255)
Q Consensus 1130 i~~lp~gld-t~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ 1207 (1255)
+..+ |++ .........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++
T Consensus 387 l~~~--~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~ 464 (510)
T PRK15439 387 RRAL--NIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE 464 (510)
T ss_pred HHHc--CCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 4443 443 33455567899999999999999999999999999999999999999999999875 4899999999999
Q ss_pred hhhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000846 1208 TIQK-SDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1208 ti~~-~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
.+.+ ||+|++|++|+++..|+++++..
T Consensus 465 ~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 465 EIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred HHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 9976 99999999999999999988754
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-72 Score=683.30 Aligned_cols=465 Identities=24% Similarity=0.397 Sum_probs=351.6
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC--CccEEEECCeecCCCCHHH-Hhc
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP--VEGEVLLDGYKIRRLHLKW-LRS 421 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~--~~G~i~~~g~~~~~~~~~~-~r~ 421 (1255)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 3599999999999999999999999999999999999987 7999999999998776543 467
Q ss_pred ccEEeccCCccCcc-cHHHHhccCCCC------CCHHHHHHHHHHhchHHHHhcCCCcccchh-cCCCCCCChHHHHHHH
Q 000846 422 QMGLVNQEPVLFAT-SITENILFGKDG------ASMDDVISAAKAANAHDFITKLPDGYETQV-GQLGFQMSGGQKQRIA 493 (1255)
Q Consensus 422 ~i~~v~Q~~~l~~~-ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LSgGqrqri~ 493 (1255)
+++||+|++.++.. |++||+.++... ...++.. ..+.+.++.+ |++... .....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 89999999988875 999999876421 1111211 1233445554 443322 3346789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhcc
Q 000846 494 IARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 494 lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|++++....
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED 231 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCCHH
Confidence 9999999999999999999999999999999998874 48899999999999865 999999999999865532110000
Q ss_pred CCCChhHHHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCcccccCC
Q 000846 572 GEGGEYYQMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYD 651 (1255)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (1255)
.
T Consensus 232 ---------------------------------------~---------------------------------------- 232 (500)
T TIGR02633 232 ---------------------------------------D---------------------------------------- 232 (500)
T ss_pred ---------------------------------------H----------------------------------------
Confidence 0
Q ss_pred CCCCCccccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHH
Q 000846 652 PDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLF 731 (1255)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 731 (1255)
.+..
T Consensus 233 ---------------------------------------------------------~~~~------------------- 236 (500)
T TIGR02633 233 ---------------------------------------------------------IITM------------------- 236 (500)
T ss_pred ---------------------------------------------------------HHHH-------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000846 732 FLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQ 811 (1255)
Q Consensus 732 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~ 811 (1255)
++.. .
T Consensus 237 --------------------------------------------~~~~-~------------------------------ 241 (500)
T TIGR02633 237 --------------------------------------------MVGR-E------------------------------ 241 (500)
T ss_pred --------------------------------------------HhCc-c------------------------------
Confidence 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHH
Q 000846 812 AIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILG 891 (1255)
Q Consensus 812 ~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~ 891 (1255)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T TIGR02633 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 892 LFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDI 971 (1255)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1255)
..
T Consensus 242 --------------------------------------------------~~---------------------------- 243 (500)
T TIGR02633 242 --------------------------------------------------IT---------------------------- 243 (500)
T ss_pred --------------------------------------------------cc----------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHcccCCCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHH
Q 000846 972 SKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKS 1051 (1255)
Q Consensus 972 ~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKS 1051 (1255)
...+.. .. +. .+.-|+++|++++|+...+.++|+|+||+|++||++||+|+||||||
T Consensus 244 --------------~~~~~~-~~-~~-------~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKS 300 (500)
T TIGR02633 244 --------------SLYPHE-PH-EI-------GDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRT 300 (500)
T ss_pred --------------cccccc-cc-CC-------CCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHH
Confidence 000000 00 00 01148999999999532234699999999999999999999999999
Q ss_pred HHHHHHhcccCC-CCceEEECCeecCCCCH-HHHhcceEEEccCC---CCCc-ccHHHHHhcCCCC-CCH-HHHHHHHHH
Q 000846 1052 TIIGLLERFYDP-LKGSVFMDEQDIRNYNL-KQLRSHIALVSQEP---TLFA-GTIRENIAYGKAD-ARE-SEIKKAAVL 1123 (1255)
Q Consensus 1052 TL~~lL~rl~~p-~~G~I~idG~di~~i~~-~~lR~~i~~V~Qdp---~LF~-gTIreNl~~g~~~-~~~-~ei~~al~~ 1123 (1255)
||+++|+|+++| ++|+|.++|.++...+. ..+|++|+||||++ .+|. .|+++|+.++... ... ..+......
T Consensus 301 TLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 380 (500)
T TIGR02633 301 ELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAEL 380 (500)
T ss_pred HHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHH
Confidence 999999999995 89999999999875443 56788999999996 3665 5999999875310 000 000001111
Q ss_pred hcHHHHHHcccccccc-ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEE
Q 000846 1124 ANAHEFISGMKDGYDT-YCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVV 1201 (1255)
Q Consensus 1124 a~l~~~i~~lp~gldt-~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~ 1201 (1255)
..+.++++.+ |+.. ........||||||||++|||||+++|++|||||||++||+.+.+.+++.|++.. ++.|+|+
T Consensus 381 ~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii 458 (500)
T TIGR02633 381 QIIGSAIQRL--KVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIV 458 (500)
T ss_pred HHHHHHHHhc--CccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEE
Confidence 2233444443 3321 2334456799999999999999999999999999999999999999999998874 5789999
Q ss_pred EccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1202 VAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1202 IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
|||+++.+.. ||++++|++|+++..++.+++
T Consensus 459 vsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 459 VSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred ECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999865 999999999999988765443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-69 Score=714.89 Aligned_cols=221 Identities=24% Similarity=0.436 Sum_probs=190.6
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcc
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ 422 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 422 (1255)
..|+++|+++.|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 469999999999632 3569999999999999999999999999999999999999999999999999864 45667889
Q ss_pred cEEeccCCccCcc-cHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhc
Q 000846 423 MGLVNQEPVLFAT-SITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALI 499 (1255)
Q Consensus 423 i~~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~ 499 (1255)
+|||||++.+|+. ||+|||.++.. ....++.. ..+++.++.+ |++........+||||||||++|||||+
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~-----~~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQ-----LEMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999999976 99999987421 11222221 1233455555 6666677778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhccC
Q 000846 500 RDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNRG 572 (1255)
Q Consensus 500 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 572 (1255)
.+|+|+|||||||+||+.+++.+++.|+++++|+|+|++||+++.+.. ||||++|++|++++.|++++|.++.
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 999999999999999999999999999998789999999999999864 9999999999999999999997653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-71 Score=681.67 Aligned_cols=456 Identities=24% Similarity=0.391 Sum_probs=352.2
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCH-HHHhcc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHL-KWLRSQ 422 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 422 (1255)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 359999999999999999999999999999999999999999999999999876543 456788
Q ss_pred cEEeccCCccCcc-cHHHHhccCCCC-----CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHH
Q 000846 423 MGLVNQEPVLFAT-SITENILFGKDG-----ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIAR 496 (1255)
Q Consensus 423 i~~v~Q~~~l~~~-ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lAR 496 (1255)
|+||+|++.++.. |++||+.++... ....+.. ..+.+.++.+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHH-----HHHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 9999999998876 999999986421 1111111 1233455555 5554456667899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhccCCC
Q 000846 497 ALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNRGEG 574 (1255)
Q Consensus 497 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~~~ 574 (1255)
||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+. .||+|++|++|++++.++..+...
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~---- 229 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVD---- 229 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCC----
Confidence 9999999999999999999999999999998874 4899999999999985 499999999999976432100000
Q ss_pred ChhHHHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCcccccCCCCC
Q 000846 575 GEYYQMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDPDD 654 (1255)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (1255)
.
T Consensus 230 ------------------------------------~------------------------------------------- 230 (501)
T PRK11288 230 ------------------------------------R------------------------------------------- 230 (501)
T ss_pred ------------------------------------H-------------------------------------------
Confidence 0
Q ss_pred CCccccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHH
Q 000846 655 DSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLG 734 (1255)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1255)
+ . + .
T Consensus 231 ----~---~----------~-----------------------------------~------------------------ 234 (501)
T PRK11288 231 ----D---Q----------L-----------------------------------V------------------------ 234 (501)
T ss_pred ----H---H----------H-----------------------------------H------------------------
Confidence 0 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000846 735 VAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIF 814 (1255)
Q Consensus 735 ~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~ 814 (1255)
+.+ ... .
T Consensus 235 --------------------------------~~~-------~~~-~--------------------------------- 241 (501)
T PRK11288 235 --------------------------------QAM-------VGR-E--------------------------------- 241 (501)
T ss_pred --------------------------------HHh-------cCC-C---------------------------------
Confidence 000 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHH
Q 000846 815 GSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFK 894 (1255)
Q Consensus 815 ~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~ 894 (1255)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK11288 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 895 ETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKG 974 (1255)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1255)
..
T Consensus 242 -----------------------------------------------~~------------------------------- 243 (501)
T PRK11288 242 -----------------------------------------------IG------------------------------- 243 (501)
T ss_pred -----------------------------------------------cc-------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHcccCCCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHH
Q 000846 975 SNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTII 1054 (1255)
Q Consensus 975 ~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~ 1054 (1255)
. .....+. +. .+..++++|++++ .+++|+||+|++||++||+||||||||||+
T Consensus 244 -----~---~~~~~~~-----~~-------~~~~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl 296 (501)
T PRK11288 244 -----D---IYGYRPR-----PL-------GEVRLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELM 296 (501)
T ss_pred -----c---ccccccc-----CC-------CCcEEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHH
Confidence 0 0000000 00 0114889999842 389999999999999999999999999999
Q ss_pred HHHhcccCCCCceEEECCeecCCCCH-HHHhcceEEEccCCC---CCc-ccHHHHHhcCCCCC--------CHHHHHHHH
Q 000846 1055 GLLERFYDPLKGSVFMDEQDIRNYNL-KQLRSHIALVSQEPT---LFA-GTIRENIAYGKADA--------RESEIKKAA 1121 (1255)
Q Consensus 1055 ~lL~rl~~p~~G~I~idG~di~~i~~-~~lR~~i~~V~Qdp~---LF~-gTIreNl~~g~~~~--------~~~ei~~al 1121 (1255)
++|+|+++|++|+|.+||.++...+. +.+|++++|+||+|. +|. .|+.||+.++.... ...+-
T Consensus 297 k~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~---- 372 (501)
T PRK11288 297 KLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE---- 372 (501)
T ss_pred HHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH----
Confidence 99999999999999999999875443 456789999999973 554 79999997653110 11111
Q ss_pred HHhcHHHHHHccccccc-cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeE
Q 000846 1122 VLANAHEFISGMKDGYD-TYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTC 1199 (1255)
Q Consensus 1122 ~~a~l~~~i~~lp~gld-t~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~Tv 1199 (1255)
...+.+++..+ |++ ........+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. .|.|+
T Consensus 373 -~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv 449 (501)
T PRK11288 373 -AENADRFIRSL--NIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAV 449 (501)
T ss_pred -HHHHHHHHHhc--CcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEE
Confidence 11223444443 332 22344456899999999999999999999999999999999999999999998875 48899
Q ss_pred EEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHH
Q 000846 1200 VVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1200 I~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl 1233 (1255)
|+|||+++.+.. ||++++|++|++++.|+++|..
T Consensus 450 iivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 450 LFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred EEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 999999999865 9999999999999999988764
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-71 Score=600.46 Aligned_cols=471 Identities=28% Similarity=0.461 Sum_probs=365.9
Q ss_pred eEEEEeEEEEcCC-CCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeecCCCCHH
Q 000846 344 EIEFRDVYFCYPS-RPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP-----VEGEVLLDGYKIRRLHLK 417 (1255)
Q Consensus 344 ~i~~~~v~~~y~~-~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~~~ 417 (1255)
-++++|++..|.. .....++++|||+|++||++||||+||||||-..+.++|+++- -+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 4788999988852 2346799999999999999999999999999999999999864 478999999999888877
Q ss_pred HHhc----ccEEeccCCc--cCcc-cHHHHh----ccCCC---CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCC
Q 000846 418 WLRS----QMGLVNQEPV--LFAT-SITENI----LFGKD---GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQ 483 (1255)
Q Consensus 418 ~~r~----~i~~v~Q~~~--l~~~-ti~~ni----~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 483 (1255)
.+|. +|++++|||- |-+- ||...| .+-.. .+..+++.+.++.+++.+- .-.+.....+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhCCcc
Confidence 7764 7999999994 3332 555444 32111 1122334444444443221 2334556679
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEE
Q 000846 484 MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVV 560 (1255)
Q Consensus 484 LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~ 560 (1255)
|||||||||.||-||..+|++||-||||.|||...+..|.+.|+++.+ |..+++|||++..++. ||||+||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 999999999999999999999999999999999999999999999854 8999999999999975 9999999999999
Q ss_pred EecChhHHhccCCCChhHHHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCCCCCCcC
Q 000846 561 ESGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSV 640 (1255)
Q Consensus 561 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (1255)
|+|+.+++...+.. .|.+..-.
T Consensus 238 E~~~t~~lF~~PqH-pYTr~Ll~--------------------------------------------------------- 259 (534)
T COG4172 238 ETGTTETLFAAPQH-PYTRKLLA--------------------------------------------------------- 259 (534)
T ss_pred ecCcHHHHhhCCCC-hHHHHHHh---------------------------------------------------------
Confidence 99998888765321 22111100
Q ss_pred CCCCcccccCCCCCCCccccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhh
Q 000846 641 GTPYSYTIQYDPDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSE 720 (1255)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 720 (1255)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHH
Q 000846 721 IKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRS 800 (1255)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~ 800 (1255)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHH
Q 000846 801 LVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTI 880 (1255)
Q Consensus 801 ~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tI 880 (1255)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 000846 881 TAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYV 960 (1255)
Q Consensus 881 ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1255)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCccccccccccEEEEEEEEECCCCC--------CCccccceeE
Q 000846 961 IAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRP--------DQMILKGLSL 1032 (1255)
Q Consensus 961 ~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~--------~~~vL~~vs~ 1032 (1255)
.+|.-.+. +.+....--++.+||...||-+. ...+.++|||
T Consensus 260 --------------------------aeP~g~~~-----p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl 308 (534)
T COG4172 260 --------------------------AEPSGDPP-----PLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISL 308 (534)
T ss_pred --------------------------cCCCCCCC-----CCCCCCCceEEecceEEEEecCCccccccchheEEecccee
Confidence 00000000 00000111245555555554221 1248999999
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHH---HhcceEEEccCCC--CC-cccHHHHHh
Q 000846 1033 KIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ---LRSHIALVSQEPT--LF-AGTIRENIA 1106 (1255)
Q Consensus 1033 ~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---lR~~i~~V~Qdp~--LF-~gTIreNl~ 1106 (1255)
++++||++||||.||||||||-.+|+|+.+++ |+|.++|.||..++.+. +|+++-+|+|||+ |= ..||.+-|.
T Consensus 309 ~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~ 387 (534)
T COG4172 309 TLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIE 387 (534)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhh
Confidence 99999999999999999999999999999876 99999999999988765 6899999999997 32 247766664
Q ss_pred cC----CCCCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCC
Q 000846 1107 YG----KADAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSAL 1178 (1255)
Q Consensus 1107 ~g----~~~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaL 1178 (1255)
=| .|..+ ++.+.+|++.+|++.-.. ..-...+|||||||||||||++-+|++++||||||+|
T Consensus 388 EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r----------~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSAL 457 (534)
T COG4172 388 EGLRVHEPKLSAAERDQRVIEALEEVGLDPATR----------NRYPHEFSGGQRQRIAIARALILKPELILLDEPTSAL 457 (534)
T ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh----------hcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHh
Confidence 33 33333 456777887777654322 2235679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhhhcCchhHH
Q 000846 1179 DSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVALSRGGAYYS 1243 (1255)
Q Consensus 1179 D~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y~~ 1243 (1255)
|..-.+.|.+.++++- .+-+-++|+|+|..++. ||+|+||.+|+|||+|+-++++++ +...|.+
T Consensus 458 D~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~-P~~~YT~ 524 (534)
T COG4172 458 DRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN-PQHEYTR 524 (534)
T ss_pred hHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcC-CCcHHHH
Confidence 9999999999999875 46799999999999976 999999999999999999999986 7777765
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-71 Score=673.05 Aligned_cols=453 Identities=22% Similarity=0.339 Sum_probs=349.8
Q ss_pred EEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCH-HHHhcccEE
Q 000846 347 FRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHL-KWLRSQMGL 425 (1255)
Q Consensus 347 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~ 425 (1255)
++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999963 359999999999999999999999999999999999999999999999999876654 446778999
Q ss_pred eccCCccCcc-cHHHHhccCCCCC-----CHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhc
Q 000846 426 VNQEPVLFAT-SITENILFGKDGA-----SMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALI 499 (1255)
Q Consensus 426 v~Q~~~l~~~-ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~ 499 (1255)
|+|++.++.. |++||+.++.... ..++.. ..+.+.++.+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMY-----RDTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 9999987765 9999998764211 111111 1234455555 6665666778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhccCCCChh
Q 000846 500 RDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNRGEGGEY 577 (1255)
Q Consensus 500 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 577 (1255)
.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~------ 224 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD------ 224 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH------
Confidence 9999999999999999999999999998874 4899999999999985 5999999999999987754332100
Q ss_pred HHHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCcccccCCCCCCCc
Q 000846 578 YQMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDPDDDSL 657 (1255)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1255)
...
T Consensus 225 -~~~---------------------------------------------------------------------------- 227 (491)
T PRK10982 225 -KII---------------------------------------------------------------------------- 227 (491)
T ss_pred -HHH----------------------------------------------------------------------------
Confidence 000
Q ss_pred cccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHH
Q 000846 658 GDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAV 737 (1255)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1255)
.
T Consensus 228 -----------------------------------------------------~-------------------------- 228 (491)
T PRK10982 228 -----------------------------------------------------A-------------------------- 228 (491)
T ss_pred -----------------------------------------------------H--------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 738 LNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSV 817 (1255)
Q Consensus 738 ~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i 817 (1255)
.+ +.. .
T Consensus 229 ------------------------------~~-------~~~-~------------------------------------ 234 (491)
T PRK10982 229 ------------------------------MM-------VGR-S------------------------------------ 234 (491)
T ss_pred ------------------------------HH-------hCC-C------------------------------------
Confidence 00 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHH
Q 000846 818 FSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETL 897 (1255)
Q Consensus 818 ~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~ 897 (1255)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 898 RGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNA 977 (1255)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 977 (1255)
.
T Consensus 235 --------------------------------------------~----------------------------------- 235 (491)
T PRK10982 235 --------------------------------------------L----------------------------------- 235 (491)
T ss_pred --------------------------------------------c-----------------------------------
Confidence 0
Q ss_pred HHHHHHHHcccCCCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHH
Q 000846 978 VRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLL 1057 (1255)
Q Consensus 978 ~~ri~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL 1057 (1255)
.. ..++. . .+. .+..|+++|++++| +++|+|+||+|++||++||+|+||||||||+++|
T Consensus 236 -~~-----~~~~~--~-~~~-------~~~~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l 294 (491)
T PRK10982 236 -TQ-----RFPDK--E-NKP-------GEVILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETL 294 (491)
T ss_pred -cc-----ccccc--c-CCC-------CCcEEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHH
Confidence 00 00000 0 000 01148999999975 2489999999999999999999999999999999
Q ss_pred hcccCCCCceEEECCeecCCCCHH-HHhcceEEEccCCC---CCc-ccHHHH-----HhcCCC--C-CCHHHHHHHHHHh
Q 000846 1058 ERFYDPLKGSVFMDEQDIRNYNLK-QLRSHIALVSQEPT---LFA-GTIREN-----IAYGKA--D-ARESEIKKAAVLA 1124 (1255)
Q Consensus 1058 ~rl~~p~~G~I~idG~di~~i~~~-~lR~~i~~V~Qdp~---LF~-gTIreN-----l~~g~~--~-~~~~ei~~al~~a 1124 (1255)
+|+.+|++|+|.+||.++...+.. .+|+.++|+||++. +|. .|+.+| +.+... . .+..+.. .
T Consensus 295 ~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 369 (491)
T PRK10982 295 FGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----S 369 (491)
T ss_pred cCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----H
Confidence 999999999999999999876654 45788999999963 565 477766 322111 0 1111111 1
Q ss_pred cHHHHHHccccccc-cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEE
Q 000846 1125 NAHEFISGMKDGYD-TYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVV 1202 (1255)
Q Consensus 1125 ~l~~~i~~lp~gld-t~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~I 1202 (1255)
.+.+++..+ |+. -.......+||||||||++||||++.+|+||||||||++||+.+.+.+.+.|+++. .++|+|+|
T Consensus 370 ~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~v 447 (491)
T PRK10982 370 DTQWVIDSM--RVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIII 447 (491)
T ss_pred HHHHHHHhc--CccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEE
Confidence 223344443 232 12345567899999999999999999999999999999999999999999998864 58999999
Q ss_pred ccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1203 AHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1203 aHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
||+++.+.. |||+++|++|+++..++.+++
T Consensus 448 sHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 448 SSEMPELLGITDRILVMSNGLVAGIVDTKTT 478 (491)
T ss_pred CCChHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 999999865 999999999999988876543
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-69 Score=714.12 Aligned_cols=212 Identities=24% Similarity=0.404 Sum_probs=180.7
Q ss_pred cEEEEEEEEECCCCC-CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCeecCCCCHHHH
Q 000846 1008 RIELKNVFFAYPTRP-DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD---PLKGSVFMDEQDIRNYNLKQL 1083 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~-~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~~~~l 1083 (1255)
.++++||+++|+.++ ++++|+|||++|+|||++||+||||||||||+++|.|+.+ |++|+|.+||.++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 379999999996322 3579999999999999999999999999999999999998 78899999999985 257
Q ss_pred hcceEEEccCCC-CCcccHHHHHhcCC----C-CCCHHH----HHHHHHHhcHHHHHHccccccccccCCCCCCCChHHH
Q 000846 1084 RSHIALVSQEPT-LFAGTIRENIAYGK----A-DARESE----IKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1084 R~~i~~V~Qdp~-LF~gTIreNl~~g~----~-~~~~~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQk 1153 (1255)
|++++||||++. ++..|+||||.++. | +.++++ +.++++..+ +.+..|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLE-------MESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC-------ChhhCCCeeCCCCCCCCHHHh
Confidence 899999999976 55679999998742 2 223333 333344333 344578999998889999999
Q ss_pred HHHHHHHHHccCCC-EEEEeccCCCCCHHHHHHHHHHHHHh-cCCCeEEEEccCchhh--hhcCEEEEEeCC-EEEEecC
Q 000846 1154 QRIALARAILKNPS-ILLLDEATSALDSVSESLVQEALEKM-MMGRTCVVVAHRLSTI--QKSDTIAVIKNG-RVVEQGS 1228 (1255)
Q Consensus 1154 QrlalARALlr~p~-ILlLDEaTSaLD~~te~~I~~~l~~~-~~~~TvI~IaHrl~ti--~~~D~I~Vl~~G-~ive~G~ 1228 (1255)
||++|||||+++|+ ||+||||||+||+.+...|++.|++. .+|+|||+++|+++.. ..+|++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999997 4689999999999974 579999999997 9999999
Q ss_pred HH
Q 000846 1229 HN 1230 (1255)
Q Consensus 1229 ~~ 1230 (1255)
+.
T Consensus 988 ~~ 989 (1394)
T TIGR00956 988 LG 989 (1394)
T ss_pred cc
Confidence 74
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-70 Score=664.28 Aligned_cols=452 Identities=22% Similarity=0.293 Sum_probs=343.7
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 3899999999963 3599999999999999999999999999999999999999999999999888766666677789
Q ss_pred EEeccCCcc--C-------cccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHH
Q 000846 424 GLVNQEPVL--F-------ATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAI 494 (1255)
Q Consensus 424 ~~v~Q~~~l--~-------~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~l 494 (1255)
+|++|++.+ + ..|+++|+.++. ...+++. +.++.+ |++........+||||||||++|
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCE---------QLAQQF--GITALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccch--hHHHHHH---------HHHHHc--CCHhhhhCCcccCCHHHHHHHHH
Confidence 999998753 2 348899886531 1112233 333333 45444556667999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhccC
Q 000846 495 ARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNRG 572 (1255)
Q Consensus 495 ARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 572 (1255)
||||+.+|++|||||||++||+++.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+++++....
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 226 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA 226 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcch
Confidence 999999999999999999999999999999998874 47899999999999865 9999999999999988877654310
Q ss_pred CCChhHHHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCcccccCCC
Q 000846 573 EGGEYYQMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDP 652 (1255)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (1255)
....+.. . .
T Consensus 227 ---~~~~~~~----------------------------~----~------------------------------------ 235 (490)
T PRK10938 227 ---LVAQLAH----------------------------S----E------------------------------------ 235 (490)
T ss_pred ---hhhhhhh----------------------------h----h------------------------------------
Confidence 0000000 0 0
Q ss_pred CCCCccccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHH
Q 000846 653 DDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFF 732 (1255)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 732 (1255)
T Consensus 236 -------------------------------------------------------------------------------- 235 (490)
T PRK10938 236 -------------------------------------------------------------------------------- 235 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000846 733 LGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQA 812 (1255)
Q Consensus 733 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~ 812 (1255)
+ .... ..+.
T Consensus 236 -----------------------------------~-------~~~~-~~~~---------------------------- 244 (490)
T PRK10938 236 -----------------------------------Q-------LEGV-QLPE---------------------------- 244 (490)
T ss_pred -----------------------------------c-------cCcc-ccCc----------------------------
Confidence 0 0000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHH
Q 000846 813 IFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGL 892 (1255)
Q Consensus 813 ~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~ 892 (1255)
T Consensus 245 -------------------------------------------------------------------------------- 244 (490)
T PRK10938 245 -------------------------------------------------------------------------------- 244 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 893 FKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDIS 972 (1255)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 972 (1255)
T Consensus 245 -------------------------------------------------------------------------------- 244 (490)
T PRK10938 245 -------------------------------------------------------------------------------- 244 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHH
Q 000846 973 KGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST 1052 (1255)
Q Consensus 973 ~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKST 1052 (1255)
..++........ ....|+++|++++|++ .++|+|+||+|++||++||+|||||||||
T Consensus 245 -------------~~~~~~~~~~~~-------~~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKST 301 (490)
T PRK10938 245 -------------PDEPSARHALPA-------NEPRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKST 301 (490)
T ss_pred -------------ccccccccccCC-------CCceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHH
Confidence 000000000000 0124999999999963 35999999999999999999999999999
Q ss_pred HHHHHhcccCC-CCceEEECCeecCC-CCHHHHhcceEEEccCCCCCc---ccHHHHHhcCCC-------CCCH---HHH
Q 000846 1053 IIGLLERFYDP-LKGSVFMDEQDIRN-YNLKQLRSHIALVSQEPTLFA---GTIRENIAYGKA-------DARE---SEI 1117 (1255)
Q Consensus 1053 L~~lL~rl~~p-~~G~I~idG~di~~-i~~~~lR~~i~~V~Qdp~LF~---gTIreNl~~g~~-------~~~~---~ei 1117 (1255)
|+++|+|+.+| ++|+|.+||.++.. .+....|++|+|+||++.++. .|+++++.++.. .... +++
T Consensus 302 Ll~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (490)
T PRK10938 302 LLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLA 381 (490)
T ss_pred HHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHH
Confidence 99999998876 69999999987632 233456889999999987642 477777653311 0111 123
Q ss_pred HHHHHHhcHHHHHHcccccccc-ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-
Q 000846 1118 KKAAVLANAHEFISGMKDGYDT-YCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM- 1195 (1255)
Q Consensus 1118 ~~al~~a~l~~~i~~lp~gldt-~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~- 1195 (1255)
.++++.. |++. .......+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+
T Consensus 382 ~~~l~~~-----------~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~ 450 (490)
T PRK10938 382 QQWLDIL-----------GIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE 450 (490)
T ss_pred HHHHHHc-----------CCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc
Confidence 3333333 3332 23444568999999999999999999999999999999999999999999998753
Q ss_pred C-CeEEEEccCchhhhh--cCEEEEEeCCEEEEec
Q 000846 1196 G-RTCVVVAHRLSTIQK--SDTIAVIKNGRVVEQG 1227 (1255)
Q Consensus 1196 ~-~TvI~IaHrl~ti~~--~D~I~Vl~~G~ive~G 1227 (1255)
+ .|+|+|||+++.+.. ||++++|++|++++.-
T Consensus 451 ~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 451 GETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred CCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 4 469999999999974 7999999999998764
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-68 Score=656.29 Aligned_cols=483 Identities=22% Similarity=0.349 Sum_probs=343.6
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999963 46999999999999999999999999999999999999999999999872 4699
Q ss_pred EeccCCccCcc-cHHHHhccCCCCC----------------CHH---HHHHH----------HHHhchHHHHhcCCCccc
Q 000846 425 LVNQEPVLFAT-SITENILFGKDGA----------------SMD---DVISA----------AKAANAHDFITKLPDGYE 474 (1255)
Q Consensus 425 ~v~Q~~~l~~~-ti~~ni~~~~~~~----------------~~~---~~~~~----------~~~~~~~~~i~~l~~g~~ 474 (1255)
|++|++.++.. |++||+.++.... ..+ .+.+. .....+.+.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 99999988865 9999998753100 000 00000 0012234555555 554
Q ss_pred chh-cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEE
Q 000846 475 TQV-GQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIM 552 (1255)
Q Consensus 475 t~~-~~~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~ 552 (1255)
... .....+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+ .|.|+|+|||+++.+. .||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 433 345689999999999999999999999999999999999999999999864 4789999999999986 499999
Q ss_pred EEeCCEEE-EecChhHHhccCCCChhHHHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCC
Q 000846 553 VLKAGKVV-ESGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPAL 631 (1255)
Q Consensus 553 vl~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (1255)
+|++|+++ +.|++++.++... ..+....+.. .
T Consensus 224 ~l~~g~i~~~~g~~~~~~~~~~-~~~~~~~~~~--------------------------~-------------------- 256 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMTAAT-QARERLLADN--------------------------A-------------------- 256 (530)
T ss_pred EEeCCEEEEecCCHHHHHHHHH-HHHHHHHHHH--------------------------H--------------------
Confidence 99999994 7888777653100 0000000000 0
Q ss_pred CCCCCCCcCCCCCcccccCCCCCCCccccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 632 NPFSPALSVGTPYSYTIQYDPDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLIS 711 (1255)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 711 (1255)
+ +
T Consensus 257 --------------------------------------------~-----~----------------------------- 258 (530)
T PRK15064 257 --------------------------------------------K-----K----------------------------- 258 (530)
T ss_pred --------------------------------------------H-----H-----------------------------
Confidence 0 0
Q ss_pred HHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHH
Q 000846 712 IYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARL 791 (1255)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl 791 (1255)
.. +
T Consensus 259 ------~~-------------------------------------------------------------~---------- 261 (530)
T PRK15064 259 ------KA-------------------------------------------------------------Q---------- 261 (530)
T ss_pred ------HH-------------------------------------------------------------H----------
Confidence 00 0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 792 ATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLAS 871 (1255)
Q Consensus 792 ~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (1255)
.+.......+....
T Consensus 262 ------------------------------------------------------------~~~~~~~~~~~~~~------ 275 (530)
T PRK15064 262 ------------------------------------------------------------IAELQSFVSRFSAN------ 275 (530)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhhcc------
Confidence 00000000000000
Q ss_pred HHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000846 872 EAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAF 951 (1255)
Q Consensus 872 e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~ 951 (1255)
. .+ ....
T Consensus 276 ---------------~---~~-------~~~~------------------------------------------------ 282 (530)
T PRK15064 276 ---------------A---SK-------AKQA------------------------------------------------ 282 (530)
T ss_pred ---------------c---hh-------hHHH------------------------------------------------
Confidence 0 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cccCCCCCCCC-CCccccccccccEEEEEEEEECCCCCCCcccc
Q 000846 952 LILLFTAYVIAEAGSMTSDISKGSNAVRSVFAIL--DRRSEIDPDSP-QGRDIKRQMRGRIELKNVFFAYPTRPDQMILK 1028 (1255)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~--~~~~~~~~~~~-~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~ 1028 (1255)
....+++.+.. ..++....... ..+......+..|+++||+++|+. .++|+
T Consensus 283 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~ 336 (530)
T PRK15064 283 -----------------------TSRAKQIDKIKLEEVKPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDN---GPLFK 336 (530)
T ss_pred -----------------------HHHHHHHhhccccccCCccccCceeeCCCCCCCCCceEEEEeeEEeeCC---ceeec
Confidence 00000000000 00000000000 000000001235999999999963 35999
Q ss_pred ceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceEEEccCCC--CCc-ccHHHHH
Q 000846 1029 GLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPT--LFA-GTIRENI 1105 (1255)
Q Consensus 1029 ~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~--LF~-gTIreNl 1105 (1255)
|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +++++||||++. ++. .|+++|+
T Consensus 337 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~~~q~~~~~~~~~~t~~~~~ 405 (530)
T PRK15064 337 NLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANIGYYAQDHAYDFENDLTLFDWM 405 (530)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEEEEEcccccccCCCCCcHHHHH
Confidence 99999999999999999999999999999999999999999998 357999999984 443 6999999
Q ss_pred hcCC-CCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHH
Q 000846 1106 AYGK-ADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSES 1184 (1255)
Q Consensus 1106 ~~g~-~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~ 1184 (1255)
.+.. +...++++.+.++..++.. ........+||||||||++||||++.+|+||||||||++||+.+.+
T Consensus 406 ~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 475 (530)
T PRK15064 406 SQWRQEGDDEQAVRGTLGRLLFSQ----------DDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIE 475 (530)
T ss_pred HHhccCCccHHHHHHHHHHcCCCh----------hHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 6432 2223444555555544310 1123445679999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEE-EecCHHHHHhh
Q 000846 1185 LVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVV-EQGSHNELVAL 1235 (1255)
Q Consensus 1185 ~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~iv-e~G~~~eLl~~ 1235 (1255)
.+.+.|++. +.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++++.
T Consensus 476 ~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 476 SLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999999886 4699999999999876 9999999999998 78999999864
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-66 Score=638.80 Aligned_cols=525 Identities=19% Similarity=0.213 Sum_probs=400.5
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 678 NMPEWGSALLGCIASIGSGAVQPI-NAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEK 756 (1255)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 756 (1255)
.++.++.++++++++++..++... .+++.+.+++.... ... . ...+.++.++..+..++..++..+++.+
T Consensus 8 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-----~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (547)
T PRK10522 8 WRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-----SLL---V-LPEFLGLLLLLMAVTLGSQLALTTLGHH 78 (547)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----cch---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666665554 35555666654321 000 0 1112222333345667888888999999
Q ss_pred HHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 757 LTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIA 836 (1255)
Q Consensus 757 ~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~ 836 (1255)
+..++|.++++++++.|++||+ ++++|++++|+++|++.+...+. .+..++..++.++++++++++++|.+++++++
T Consensus 79 ~~~~lR~~l~~~ll~~~~~~~~--~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 79 FVYRLRSEFIKRILDTHVERIE--QLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHhCCHHHHh--ccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999998 78899999999999999998765 46778888888899999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccH---HHHHHHHHHHHhchHHHHHHHHHHHHH
Q 000846 837 VQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQ---KRILGLFKETLRGPKEESLKHSWYSGI 913 (1255)
Q Consensus 837 ~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (1255)
.+|+.+...+...+..++..++.++...+....+.|.+.|+++++ ++.+ +.+.+++.+..++..+...+..+....
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLS 234 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHH
Confidence 888877666655555566666777778888999999999999995 5443 456788888877777666665554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC
Q 000846 914 GLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDP 993 (1255)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~ 993 (1255)
...+...+..+..++.+++++.. +..+.+.+..+..+......++..+...+..+..+..+.+|+.++.+.+++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~ 311 (547)
T PRK10522 235 AVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF 311 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 33333333333333334444332 112333333333333345578888899999999999999999998765432211
Q ss_pred CCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCe
Q 000846 994 DSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQ 1073 (1255)
Q Consensus 994 ~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~ 1073 (1255)
.. ..+ .+..+.|+|+||+|+||+ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+
T Consensus 312 ~~--~~~--~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 385 (547)
T PRK10522 312 PR--PQA--FPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385 (547)
T ss_pred cc--ccc--cCcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 11 111 111357999999999974 346999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHH
Q 000846 1074 DIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1074 di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQk 1153 (1255)
|+++++.+++|++|+||||||.+|++|+++| + ++.++++++++++..++.+++. .|+|. .+|.+||||||
T Consensus 386 ~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~LSgGq~ 455 (547)
T PRK10522 386 PVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDGR-----ISNLKLSKGQK 455 (547)
T ss_pred ECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-ccccC-----CCCCCCCHHHH
Confidence 9999999999999999999999999999999 2 4567888888887777666554 23332 14889999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEe-cCHH
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQ-GSHN 1230 (1255)
Q Consensus 1154 QrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~-G~~~ 1230 (1255)
||++||||++++|+|||||||||+||+++|+.+.+.+.+.. +++|+|+||||++++..||+|++|++|+++|. |++.
T Consensus 456 qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~ 535 (547)
T PRK10522 456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEER 535 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCch
Confidence 99999999999999999999999999999999999998664 48999999999999999999999999999987 6665
Q ss_pred HHHh
Q 000846 1231 ELVA 1234 (1255)
Q Consensus 1231 eLl~ 1234 (1255)
+-..
T Consensus 536 ~~~~ 539 (547)
T PRK10522 536 DAAS 539 (547)
T ss_pred hhhh
Confidence 5443
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-66 Score=641.99 Aligned_cols=482 Identities=22% Similarity=0.327 Sum_probs=337.3
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 5899999999962 24699999999999999999999999999999999999999999999975 2479
Q ss_pred EEeccCCccCcc-cHHHHhccCCCC----------------CC----------HHHHHHHHH-------HhchHHHHhcC
Q 000846 424 GLVNQEPVLFAT-SITENILFGKDG----------------AS----------MDDVISAAK-------AANAHDFITKL 469 (1255)
Q Consensus 424 ~~v~Q~~~l~~~-ti~~ni~~~~~~----------------~~----------~~~~~~~~~-------~~~~~~~i~~l 469 (1255)
|||+|+|.+++. |++||+.++... .. ..++.+.+. ...+.+.+..+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999876 999999875310 00 001111111 11223344444
Q ss_pred CCcccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-c
Q 000846 470 PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRT-A 548 (1255)
Q Consensus 470 ~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~ 548 (1255)
|++ .......+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. .|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence 443 2456677999999999999999999999999999999999999999999998863 599999999999865 9
Q ss_pred CEEEEEeCCEEE-EecChhHHhccCCCChhHHHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCC
Q 000846 549 NLIMVLKAGKVV-ESGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAAS 627 (1255)
Q Consensus 549 d~i~vl~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (1255)
|+|++|++|+++ ..|++++..+.. ..+... . . .
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~~~---------~~~~~~---------------~----~--~---------------- 261 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLEQK---------AKRLAQ---------------E----E--K---------------- 261 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHHHH---------HHHHHH---------------H----H--H----------------
Confidence 999999999986 677776654310 000000 0 0 0
Q ss_pred CCCCCCCCCCCcCCCCCcccccCCCCCCCccccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 628 TPALNPFSPALSVGTPYSYTIQYDPDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVG 707 (1255)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1255)
. +
T Consensus 262 ------------------------------------------~-----------~------------------------- 263 (556)
T PRK11819 262 ------------------------------------------Q-----------E------------------------- 263 (556)
T ss_pred ------------------------------------------H-----------H-------------------------
Confidence 0 0
Q ss_pred HHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHH
Q 000846 708 SLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAI 787 (1255)
Q Consensus 708 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l 787 (1255)
.. .++.+ .++. .|.+ ..+.+
T Consensus 264 -----------~~----------------------------------------~~~~~-~~~~----~~~~--~~~~~-- 283 (556)
T PRK11819 264 -----------AA----------------------------------------RQKAL-KREL----EWVR--QSPKA-- 283 (556)
T ss_pred -----------HH----------------------------------------HHHHH-HHHH----HHHH--Hhhhh--
Confidence 00 00000 0000 0000 00000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 788 CARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGS 867 (1255)
Q Consensus 788 ~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1255)
+. . +.+.
T Consensus 284 -----------------------------------------------------------------~~-~-~~~~------ 290 (556)
T PRK11819 284 -----------------------------------------------------------------RQ-A-KSKA------ 290 (556)
T ss_pred -----------------------------------------------------------------hH-H-HHHH------
Confidence 00 0 0000
Q ss_pred HHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Q 000846 868 QLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHL 947 (1255)
Q Consensus 868 ~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 947 (1255)
..
T Consensus 291 ---------------------~~--------------------------------------------------------- 292 (556)
T PRK11819 291 ---------------------RL--------------------------------------------------------- 292 (556)
T ss_pred ---------------------HH---------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC-CCCCCccccccccccEEEEEEEEECCCCCCCcc
Q 000846 948 FQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDP-DSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMI 1026 (1255)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~-~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~v 1026 (1255)
...++..+ ..+++.+. .....++.+...+..|+++||+++|++ .++
T Consensus 293 ----------------------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~ 339 (556)
T PRK11819 293 ----------------------------ARYEELLS--EEYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGD---RLL 339 (556)
T ss_pred ----------------------------HHHHHhhc--ccccccCCCceeecCCCCCCCCeEEEEEeEEEEECC---eee
Confidence 00000000 00000000 000000000011235999999999963 359
Q ss_pred ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceEEEccCC-CCCc-ccHHHH
Q 000846 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEP-TLFA-GTIREN 1104 (1255)
Q Consensus 1027 L~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp-~LF~-gTIreN 1104 (1255)
|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ + .+|+||||++ .++. .|++||
T Consensus 340 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~ 408 (556)
T PRK11819 340 IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEE 408 (556)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEEEEEeCchhhcCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999954 2 1699999997 5654 599999
Q ss_pred HhcCCCC--C--CHHHHHHHHHHhcHHHHHHcccccccc-ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCC
Q 000846 1105 IAYGKAD--A--RESEIKKAAVLANAHEFISGMKDGYDT-YCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD 1179 (1255)
Q Consensus 1105 l~~g~~~--~--~~~ei~~al~~a~l~~~i~~lp~gldt-~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD 1179 (1255)
+.++... . .+.+..++++.. |+.. ........||||||||++||||++.+|++|||||||++||
T Consensus 409 l~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD 477 (556)
T PRK11819 409 ISGGLDIIKVGNREIPSRAYVGRF-----------NFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477 (556)
T ss_pred HHhhcccccccccHHHHHHHHHhC-----------CCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 9875321 1 122222222222 2321 1234456799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeC-CEEEE-ecCHHHHHhh
Q 000846 1180 SVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKN-GRVVE-QGSHNELVAL 1235 (1255)
Q Consensus 1180 ~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~-G~ive-~G~~~eLl~~ 1235 (1255)
+.+...+.+.|++. + .|+|+|||+++.+.. ||+|++|++ |++.+ .|+++++++.
T Consensus 478 ~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 478 VETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 99999999999986 3 489999999999865 999999986 88874 7899988764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-66 Score=638.19 Aligned_cols=481 Identities=24% Similarity=0.351 Sum_probs=336.7
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
-|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999962 24699999999999999999999999999999999999999999999975 2479
Q ss_pred EEeccCCccCcc-cHHHHhccCCCC-----------------C-C--------HHHHHHHHHHhc-------hHHHHhcC
Q 000846 424 GLVNQEPVLFAT-SITENILFGKDG-----------------A-S--------MDDVISAAKAAN-------AHDFITKL 469 (1255)
Q Consensus 424 ~~v~Q~~~l~~~-ti~~ni~~~~~~-----------------~-~--------~~~~~~~~~~~~-------~~~~i~~l 469 (1255)
|||+|+|.++.. |++||+.++... . . ..++.++++.++ +.+.+..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 999999999865 999999875310 0 0 111222222222 22334444
Q ss_pred CCcccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-c
Q 000846 470 PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRT-A 548 (1255)
Q Consensus 470 ~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~ 548 (1255)
|++. ......+||||||||++|||||+.+|++|||||||++||+++...+.+.|++. +.|+|+|||+++.+.. |
T Consensus 151 --~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 4422 35567899999999999999999999999999999999999999999999876 3599999999999865 9
Q ss_pred CEEEEEeCCEEE-EecChhHHhccCCCChhHHHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCC
Q 000846 549 NLIMVLKAGKVV-ESGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAAS 627 (1255)
Q Consensus 549 d~i~vl~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (1255)
|+|++|++|+++ ..|++++..+.. +.+. .. . . .
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~~~---------~~~~-~~------------~------~--~---------------- 259 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLEQK---------EKRL-EQ------------E------E--K---------------- 259 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHHHH---------HHHH-HH------------H------H--H----------------
Confidence 999999999976 667777664310 0000 00 0 0 0
Q ss_pred CCCCCCCCCCCcCCCCCcccccCCCCCCCccccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 628 TPALNPFSPALSVGTPYSYTIQYDPDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVG 707 (1255)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1255)
+ .
T Consensus 260 -------------------------------~-----------~------------------------------------ 261 (552)
T TIGR03719 260 -------------------------------E-----------E------------------------------------ 261 (552)
T ss_pred -------------------------------H-----------H------------------------------------
Confidence 0 0
Q ss_pred HHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHH
Q 000846 708 SLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAI 787 (1255)
Q Consensus 708 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l 787 (1255)
.. ..+++
T Consensus 262 -----------~~----------------------------------------~~~~~---------------------- 268 (552)
T TIGR03719 262 -----------SA----------------------------------------RQKAL---------------------- 268 (552)
T ss_pred -----------HH----------------------------------------HHHHH----------------------
Confidence 00 00000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 788 CARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGS 867 (1255)
Q Consensus 788 ~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1255)
.+. ..| .... .. ..+.+ .
T Consensus 269 -~~~----------------------------------~~~------------------~~~~--~~-~~~~~-~----- 286 (552)
T TIGR03719 269 -KRE----------------------------------LEW------------------VRSS--PK-ARQAK-S----- 286 (552)
T ss_pred -HHH----------------------------------HHH------------------HHhh--hh-hHHHH-H-----
Confidence 000 000 0000 00 00000 0
Q ss_pred HHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Q 000846 868 QLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHL 947 (1255)
Q Consensus 868 ~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 947 (1255)
.....+
T Consensus 287 -------------------~~~~~~------------------------------------------------------- 292 (552)
T TIGR03719 287 -------------------KARLAR------------------------------------------------------- 292 (552)
T ss_pred -------------------HHHHHH-------------------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC-CCCCCccccccccccEEEEEEEEECCCCCCCcc
Q 000846 948 FQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDP-DSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMI 1026 (1255)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~-~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~v 1026 (1255)
.++..+ ..++..+. .....+..+...+..|+++|++++|++ .++
T Consensus 293 ------------------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~ 337 (552)
T TIGR03719 293 ------------------------------YEELLS--QEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGD---KLL 337 (552)
T ss_pred ------------------------------HHhhhh--hcccccCCCceeecCCCCCCCCeEEEEeeEEEEECC---eee
Confidence 000000 00000000 000000000001225999999999963 369
Q ss_pred ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceEEEccCCC-CCc-ccHHHH
Q 000846 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPT-LFA-GTIREN 1104 (1255)
Q Consensus 1027 L~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~-LF~-gTIreN 1104 (1255)
|+|+||+|++||++||+||||||||||+++|.|+.+|++|+|.+++ + .+|+|+||++. ++. .|++||
T Consensus 338 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~ 406 (552)
T TIGR03719 338 IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEE 406 (552)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEEEEEeCCccccCCCCcHHHH
Confidence 9999999999999999999999999999999999999999999955 2 16999999973 554 599999
Q ss_pred HhcCCCC--CC--HHHHHHHHHHhcHHHHHHcccccccc-ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCC
Q 000846 1105 IAYGKAD--AR--ESEIKKAAVLANAHEFISGMKDGYDT-YCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD 1179 (1255)
Q Consensus 1105 l~~g~~~--~~--~~ei~~al~~a~l~~~i~~lp~gldt-~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD 1179 (1255)
+.++... .. +.+.. +.+..+ |++. ........||||||||++|||||+.+|+||||||||++||
T Consensus 407 l~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD 475 (552)
T TIGR03719 407 ISGGLDIIQLGKREVPSR---------AYVGRF--NFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475 (552)
T ss_pred HHhhccccccCcchHHHH---------HHHHhC--CCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 9876421 11 11222 223332 3322 1234456799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeC-CEEE-EecCHHHHHh
Q 000846 1180 SVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKN-GRVV-EQGSHNELVA 1234 (1255)
Q Consensus 1180 ~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~-G~iv-e~G~~~eLl~ 1234 (1255)
+.+.+.+.+.|++. . .|+|+|||+++.+.. ||+|++|++ |+++ ..|+++++++
T Consensus 476 ~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 476 VETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 99999999999987 3 489999999999876 999999987 6887 4588887764
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-64 Score=626.74 Aligned_cols=518 Identities=18% Similarity=0.180 Sum_probs=391.6
Q ss_pred hhhCchhHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 9 RYADGKDKLLMLFGTIGSIGDGMQYPL-MVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEGLCWTR 87 (1255)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1255)
+|.+++++. ++++++++++..+.... .+++.+.++|.... .. ..+. .++++.++..++.+++.++..+
T Consensus 6 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~----~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~ 74 (547)
T PRK10522 6 LVWRQYRWP-FISVMALSLASAALGIGLIAFINQRLIETADT----SL--LVLP----EFLGLLLLLMAVTLGSQLALTT 74 (547)
T ss_pred HHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----cc--hHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 34444554444444333 24566777875421 00 1111 1112222334567788888899
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 88 TAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWR 167 (1255)
Q Consensus 88 ~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1255)
.+.++..++|.+++++++++|+++|++ +++|++++|+++|++.+..++. .++.++.+++.++++++++++++|+
T Consensus 75 ~~~~~~~~lR~~l~~~ll~~~~~~~~~-----~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~ 148 (547)
T PRK10522 75 LGHHFVYRLRSEFIKRILDTHVERIEQ-----LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPK 148 (547)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhc-----cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999996 6777999999999999998766 4777888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcch---HHHHHHHHHHHHHHHHHHHH
Q 000846 168 LSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAE---HETLIRFSNALQKTMELGIK 244 (1255)
Q Consensus 168 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e---~~~~~~~~~~~~~~~~~~~~ 244 (1255)
+++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++++ ++.+ +.+.+++.+..++..+...+
T Consensus 149 l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (547)
T PRK10522 149 MLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIR 227 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHH
Confidence 9999999999988888888888888888889999999999999999999996 4443 45677888877777666655
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000846 245 QGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVD 323 (1255)
Q Consensus 245 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 323 (1255)
............ .......++.+++++... .+ +.+.+..+.++......|+..+...+..++.++.+.+|+.++++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~ 304 (547)
T PRK10522 228 ADTFHLSAVNWSNIMMLGAIGLVFYMANSLG-WA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLAL 304 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 544443322222 111111222333333221 12 23333333333344557888888889999999999999999976
Q ss_pred CCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccE
Q 000846 324 RTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403 (1255)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~ 403 (1255)
.+++.+... ....+..+.|+++||+|+|+++ .++|+|+||++++||++||+||||||||||+++|+|+|+|++|+
T Consensus 305 ~~~~~~~~~---~~~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~ 379 (547)
T PRK10522 305 APYKAEFPR---PQAFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE 379 (547)
T ss_pred ccccccccc---ccccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 543221111 1111113579999999999742 46999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCC
Q 000846 404 VLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQ 483 (1255)
Q Consensus 404 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 483 (1255)
|.+||+++++++.+++|++++||+|||.+|++|++|| + ++.+++++.++++..++.+++. .|+|. .+|.+
T Consensus 380 i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~ 449 (547)
T PRK10522 380 ILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDGR-----ISNLK 449 (547)
T ss_pred EEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-ccccC-----CCCCC
Confidence 9999999999999999999999999999999999999 2 3455666666666655544433 12221 14789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEEEE
Q 000846 484 MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIRTANLIMVLKAGKVVE 561 (1255)
Q Consensus 484 LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 561 (1255)
||||||||++||||++++|++||||||||+||+++++.+.+.+.+.. +++|+|+||||+++++.||+|++|++|+++|
T Consensus 450 LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e 529 (547)
T PRK10522 450 LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529 (547)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999987653 4899999999999999999999999999998
Q ss_pred e
Q 000846 562 S 562 (1255)
Q Consensus 562 ~ 562 (1255)
.
T Consensus 530 ~ 530 (547)
T PRK10522 530 L 530 (547)
T ss_pred e
Confidence 6
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-64 Score=664.96 Aligned_cols=213 Identities=23% Similarity=0.388 Sum_probs=176.8
Q ss_pred cEEEEEEEEECCCC----------CCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCeec
Q 000846 1008 RIELKNVFFAYPTR----------PDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP--LKGSVFMDEQDI 1075 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~----------~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~idG~di 1075 (1255)
.+.|+||++.++.. ....+|+|||++++|||.+||+||||||||||+++|.|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 69999999998531 123699999999999999999999999999999999999873 689999999886
Q ss_pred CCCCHHHHhcceEEEccCCCCCc-ccHHHHHhcCC----C-CCCHHH----HHHHHHHhcHHHHHHccccccccccCCCC
Q 000846 1076 RNYNLKQLRSHIALVSQEPTLFA-GTIRENIAYGK----A-DARESE----IKKAAVLANAHEFISGMKDGYDTYCGERG 1145 (1255)
Q Consensus 1076 ~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNl~~g~----~-~~~~~e----i~~al~~a~l~~~i~~lp~gldt~vge~G 1145 (1255)
++ ..+|+.+|||+|++.++. .|++|||.++. | +.+.++ +.+.++..++. +-.|+.+|..+
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-------~~~~~~vg~~~ 1016 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-------NLKDAIVGLPG 1016 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-------hHhCCccCCCC
Confidence 53 456788999999998776 59999997642 2 223322 34444444443 33577787544
Q ss_pred -CCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchh--hhhcCEEEEEeC-
Q 000846 1146 -VQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLST--IQKSDTIAVIKN- 1220 (1255)
Q Consensus 1146 -~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~t--i~~~D~I~Vl~~- 1220 (1255)
..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++.. +|+|||+++|+++. ...+|++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6899999999999999999999999999999999999999999999875 58999999999984 466999999986
Q ss_pred CEEEEecCHH
Q 000846 1221 GRVVEQGSHN 1230 (1255)
Q Consensus 1221 G~ive~G~~~ 1230 (1255)
|+++..|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-64 Score=628.05 Aligned_cols=201 Identities=25% Similarity=0.386 Sum_probs=164.4
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .+|
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999963 46999999999999999999999999999999999999999999999741 269
Q ss_pred EEEccCC--CCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 000846 1088 ALVSQEP--TLFA-GTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILK 1164 (1255)
Q Consensus 1088 ~~V~Qdp--~LF~-gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr 1164 (1255)
+|+||++ .++. .|+.+++....+...++++.+.+...++.. ..+......||||||||++||||++.
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQG----------DKVTEETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 9999985 3443 488888742122222334444443333210 11233456799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEE-EecCHHHHHh
Q 000846 1165 NPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVV-EQGSHNELVA 1234 (1255)
Q Consensus 1165 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~iv-e~G~~~eLl~ 1234 (1255)
+|+||||||||++||+.+...+.+.|++. . .|||+|||+++.+.. ||+|++|++|+++ ..|++++..+
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999999999999999999986 3 599999999999865 9999999999997 6899998853
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-62 Score=611.86 Aligned_cols=530 Identities=18% Similarity=0.172 Sum_probs=439.9
Q ss_pred HHHHHHHHhchhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000846 670 SQWRLLKINMPEWG-----SALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSL 744 (1255)
Q Consensus 670 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 744 (1255)
.+++++++.+|+|. .+++.+++.++...+....+++.+.+++.....+..........+.+++++..++..+..+
T Consensus 78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~ 157 (659)
T TIGR00954 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKY 157 (659)
T ss_pred HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777775 5667777777788888899999999999876544332322233444555566677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 745 LQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGL 824 (1255)
Q Consensus 745 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~ 824 (1255)
+..++......++..++|++.+++....++.|||. ++|++.+|+++|++.+...+...+..++..++.++++++.++
T Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~ 234 (659)
T TIGR00954 158 LLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLL 234 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999983 679999999999999999999999999999999998888777
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhchHHH
Q 000846 825 V-LSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEE 903 (1255)
Q Consensus 825 ~-~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~ 903 (1255)
. ++|.+++++++.+|+.+.......+...+...+..+..++......|.+.|+++|++|+.++.+.+++.+..++..+.
T Consensus 235 ~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~ 314 (659)
T TIGR00954 235 TALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEH 314 (659)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 6 999999999999998888887777778888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-c----CCCCHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHH
Q 000846 904 SLKHSWYSGIGLFSSQFFNTA--STALAYWYGGRLLT-Q----ELITPEHLFQA-FLI---LLFTAYVIAEAGSMTSDIS 972 (1255)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~-~----~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~ 972 (1255)
..+..+.......+..++... .....++.|...+. . |.+|.+.+++. ..+ +..+..++..+.....+++
T Consensus 315 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~ 394 (659)
T TIGR00954 315 LNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMT 394 (659)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888888888877643 22233333443332 2 67888877653 333 3455778888899999999
Q ss_pred HHHHHHHHHHHHHcccCCCCC------CCCC---C------------ccccccccccEEEEEEEEECCCCCCCcccccee
Q 000846 973 KGSNAVRSVFAILDRRSEIDP------DSPQ---G------------RDIKRQMRGRIELKNVFFAYPTRPDQMILKGLS 1031 (1255)
Q Consensus 973 ~~~~a~~ri~~~~~~~~~~~~------~~~~---~------------~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs 1031 (1255)
.+..+.+|+.++++.+++... ..+. . ........+.|+++||+|+||+ ++++|+|+|
T Consensus 395 ~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~is 472 (659)
T TIGR00954 395 RLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLS 472 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecce
Confidence 999999999999976433210 0000 0 0000112356999999999974 346999999
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCC--
Q 000846 1032 LKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGK-- 1109 (1255)
Q Consensus 1032 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~-- 1109 (1255)
|+|++||++||+||||||||||+++|+|+++|++|+|.+|+ |++|+||||+|.+|++|++|||.++.
T Consensus 473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~ 541 (659)
T TIGR00954 473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSS 541 (659)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCCh
Confidence 99999999999999999999999999999999999999874 67899999999999999999999874
Q ss_pred -----CCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHH
Q 000846 1110 -----ADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSES 1184 (1255)
Q Consensus 1110 -----~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~ 1184 (1255)
++.++++++++++.+++++++.. |.||||..+ .+.+||||||||++||||++++|++||||||||+||+++++
T Consensus 542 ~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~ 619 (659)
T TIGR00954 542 EDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG 619 (659)
T ss_pred hhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 34678899999999999999987 999999876 56799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEe
Q 000846 1185 LVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIK 1219 (1255)
Q Consensus 1185 ~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~ 1219 (1255)
.+++.+++. ++|+|+||||++++..||+|++|+
T Consensus 620 ~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 620 YMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMD 652 (659)
T ss_pred HHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEe
Confidence 999999874 899999999999999999999996
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-62 Score=613.48 Aligned_cols=529 Identities=14% Similarity=0.108 Sum_probs=428.1
Q ss_pred hHHHHhhhCchhH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 000846 4 NDGLFRYADGKDK----LLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAF 79 (1255)
Q Consensus 4 ~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1255)
++++++|+.|+.+ ..+++.+++.++..++....+++.+.++|.+.......+. ..+..+.++++++.++..+..+
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~-~~l~~~~l~~~~~~~~~~~~~~ 157 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFA-WILFKWFLIAPPASFINSAIKY 157 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888876654 3455666666666667777779999999986532110010 0122233334444555566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 80 VEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLL 159 (1255)
Q Consensus 80 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~ 159 (1255)
+..++......++..++|.+++++....++.+||. ++|++.+|+++|++.+.+.+...+..++..++.++++.+
T Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~------~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~ 231 (659)
T TIGR00954 158 LLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS------RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSF 231 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC------CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888889999999999999988889999984 456999999999999999999999999999999998888
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHH
Q 000846 160 FSFI-LSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKT 238 (1255)
Q Consensus 160 ~~~~-~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~~~~~~~~~~~~~ 238 (1255)
+++. ++|.+++++++..|+.+++..++.+++.+...+.++..++..+..+|.++|+++||+|+.|+.+.+++.+..++.
T Consensus 232 ~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l 311 (659)
T TIGR00954 232 KLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRL 311 (659)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7776 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHh-h----CCCCHHHHHHH-HHH---HHHHHHHHHHHHHHHH
Q 000846 239 MELGIKQGFIKGLLMGSM-GMIYV--GWAFQAWVGSYLVT-E----KGEKGGSIFVA-GVS---IIMGGLSVLGALPNLT 306 (1255)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~g~~lv~-~----~~~~~g~~~~~-~~~---~~~~~~~~~~~~~~~~ 306 (1255)
.+...+...+.+...++. .+... ..+..++.|...+. . |.+|.|.+++. ..+ +.....|+..+...+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~ 391 (659)
T TIGR00954 312 VEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGR 391 (659)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888887776665 22221 22222333443332 2 67888877663 322 3455778888888899
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCC------C--C-ccc-------------ccCCCccceEEEEeEEEEcCCCCCCcccc
Q 000846 307 AITEAKVAATRIFEMVDRTPAIDT------D--D-KMG-------------KALSYVRGEIEFRDVYFCYPSRPDTLVLQ 364 (1255)
Q Consensus 307 ~~~~~~~a~~ri~~~l~~~~~~~~------~--~-~~~-------------~~~~~~~~~i~~~~v~~~y~~~~~~~~l~ 364 (1255)
.++++.++.+|+.++++.+++.+. . . ... .......+.|+++||+|+|+++ +++|+
T Consensus 392 ~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~ 469 (659)
T TIGR00954 392 DMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIE 469 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeee
Confidence 999999999999999975332110 0 0 000 0011134579999999999742 36999
Q ss_pred ceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccC
Q 000846 365 GLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFG 444 (1255)
Q Consensus 365 ~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~ 444 (1255)
|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|++|++|++|||.++
T Consensus 470 ~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~ 538 (659)
T TIGR00954 470 SLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYP 538 (659)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcC
Confidence 99999999999999999999999999999999999999999874 5689999999999999999999987
Q ss_pred C-------CCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 000846 445 K-------DGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ 517 (1255)
Q Consensus 445 ~-------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~ 517 (1255)
. +..+++++.++++.+++++++.+ |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||++
T Consensus 539 ~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~ 616 (659)
T TIGR00954 539 DSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVD 616 (659)
T ss_pred CChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 4 23567788999999999999887 899999876 57799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeC
Q 000846 518 SERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKA 556 (1255)
Q Consensus 518 ~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~ 556 (1255)
+++.+.+.+++. |+|+|+||||++.++.||+|++|+.
T Consensus 617 ~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 617 VEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999999998764 8999999999999999999999974
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-63 Score=618.20 Aligned_cols=201 Identities=26% Similarity=0.402 Sum_probs=163.5
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+ |.++ +|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999963 46999999999999999999999999999999999999999999999 4332 69
Q ss_pred EEEccCC-CCCc-ccHHHHHhcCCCCC--C--HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHH
Q 000846 1088 ALVSQEP-TLFA-GTIRENIAYGKADA--R--ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161 (1255)
Q Consensus 1088 ~~V~Qdp-~LF~-gTIreNl~~g~~~~--~--~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARA 1161 (1255)
+|++|++ .++. .|+.||+.++.+.. . +.++.+.+...++. ++..+. ....||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~----~~~~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFH------PKRAMT----PVKALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCC------HHHHhC----hhhhCCHHHHHHHHHHHH
Confidence 9999986 4655 49999998754321 1 12222222222210 111233 345799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEe-CCEEEEe-cCHHHHHh
Q 000846 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIK-NGRVVEQ-GSHNELVA 1234 (1255)
Q Consensus 1162 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~-~G~ive~-G~~~eLl~ 1234 (1255)
++.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. ||+|++|+ +|++.++ |++++-+.
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999999999876 5699999999999865 99999998 8999874 88888754
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-63 Score=618.48 Aligned_cols=200 Identities=27% Similarity=0.394 Sum_probs=164.5
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++||+++|++ +.++|+|+||+|++||++||+||||||||||+++|.|+.+|++|+|.+++ +.+|
T Consensus 508 ~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 5999999999963 23589999999999999999999999999999999999999999999976 3579
Q ss_pred EEEccCCCCCcccHHHHHhc----CCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHc
Q 000846 1088 ALVSQEPTLFAGTIRENIAY----GKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAIL 1163 (1255)
Q Consensus 1088 ~~V~Qdp~LF~gTIreNl~~----g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALl 1163 (1255)
+|+||++. ...++.+|..+ ..+..+++++.++++..++.+. ........||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~----------~~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChH----------HhcCCccccCHHHHHHHHHHHHHh
Confidence 99999973 23355555321 1223455666666666555321 122345689999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEE-EecCHHHHH
Q 000846 1164 KNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVV-EQGSHNELV 1233 (1255)
Q Consensus 1164 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~iv-e~G~~~eLl 1233 (1255)
.+|++|||||||++||+.+...+.+.+.+. + .|+|+|||+++.+.. ||+|++|++|+++ ..|++++..
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999999999999999999999999875 3 499999999999975 9999999999998 678888764
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-63 Score=571.98 Aligned_cols=457 Identities=26% Similarity=0.413 Sum_probs=357.1
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCH-HHHhcc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHL-KWLRSQ 422 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 422 (1255)
-++++|++++|+. .++|+||||++.+||++||+|.||||||||+|.|+|.|+|++|+|.+||++....++ +.....
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4889999999973 579999999999999999999999999999999999999999999999999987765 556778
Q ss_pred cEEeccCCccCcc-cHHHHhccCCCCCC------HHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHH
Q 000846 423 MGLVNQEPVLFAT-SITENILFGKDGAS------MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIA 495 (1255)
Q Consensus 423 i~~v~Q~~~l~~~-ti~~ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lA 495 (1255)
|+.|+||+.|++. ||.|||.+|++... ..++.+. +.+.+..+ |++........+||+||||.|+||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~-----A~~~l~~l--g~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR-----ARELLARL--GLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHH-----HHHHHHHc--CCCCChhhhhhhCCHHHHHHHHHH
Confidence 9999999999976 99999999876433 2333322 23345544 332224455568999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecCh-hHHhccC
Q 000846 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSH-NELMNRG 572 (1255)
Q Consensus 496 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~-~~l~~~~ 572 (1255)
||+..+++|+|||||||+|+.+..+.+.+.+++++ +|.++|+||||++++. .||||.||+||+.+..++. .++-.
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~-- 235 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSE-- 235 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCH--
Confidence 99999999999999999999999999999999986 5999999999999985 5999999999998875431 11000
Q ss_pred CCChhHHHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCcccccCCC
Q 000846 573 EGGEYYQMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDP 652 (1255)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (1255)
T Consensus 236 -------------------------------------------------------------------------------- 235 (500)
T COG1129 236 -------------------------------------------------------------------------------- 235 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHH
Q 000846 653 DDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFF 732 (1255)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 732 (1255)
+ .++..+.
T Consensus 236 ------~------------------------------------------------~lv~~Mv------------------ 243 (500)
T COG1129 236 ------D------------------------------------------------ELVRLMV------------------ 243 (500)
T ss_pred ------H------------------------------------------------HHHHHhh------------------
Confidence 0 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000846 733 LGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQA 812 (1255)
Q Consensus 733 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~ 812 (1255)
|+
T Consensus 244 ----------------------------------------------------Gr-------------------------- 245 (500)
T COG1129 244 ----------------------------------------------------GR-------------------------- 245 (500)
T ss_pred ----------------------------------------------------Cc--------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHH
Q 000846 813 IFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGL 892 (1255)
Q Consensus 813 ~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~ 892 (1255)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 893 FKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDIS 972 (1255)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 972 (1255)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHH
Q 000846 973 KGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST 1052 (1255)
Q Consensus 973 ~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKST 1052 (1255)
++-+..++ ...... ....++++|++..- .++|+||++++||.+||.|-=|||+|-
T Consensus 246 ----------~~~~~~~~-~~~~~~-------~~~~l~v~~l~~~~-------~~~dvSf~vr~GEIlGiaGLvGaGRTE 300 (500)
T COG1129 246 ----------ELEDLFPE-PPEEGI-------GEPVLEVRNLSGGG-------KVRDVSFTVRAGEILGIAGLVGAGRTE 300 (500)
T ss_pred ----------chhhhccc-ccccCC-------CCcEEEEecCCCCC-------ceeCceeEEeCCcEEEEeccccCCHHH
Confidence 00000000 000000 11136677766421 589999999999999999999999999
Q ss_pred HHHHHhcccCCCCceEEECCeecCCCCH-HHHhcceEEEccCCC----CCcccHHHHHhcCCC-CCCHH-HHHHHHHHhc
Q 000846 1053 IIGLLERFYDPLKGSVFMDEQDIRNYNL-KQLRSHIALVSQEPT----LFAGTIRENIAYGKA-DARES-EIKKAAVLAN 1125 (1255)
Q Consensus 1053 L~~lL~rl~~p~~G~I~idG~di~~i~~-~~lR~~i~~V~Qdp~----LF~gTIreNl~~g~~-~~~~~-ei~~al~~a~ 1125 (1255)
++.+|+|..++.+|+|.+||.++.--++ +..+..|+|||-|.. +...+|++|+.+... ..+.. -+....+...
T Consensus 301 l~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~ 380 (500)
T COG1129 301 LARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERAL 380 (500)
T ss_pred HHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHH
Confidence 9999999999999999999998887765 468889999998874 446799999977621 11111 3445556666
Q ss_pred HHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcc
Q 000846 1126 AHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAH 1204 (1255)
Q Consensus 1126 l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaH 1204 (1255)
+.+++..|.-.-.. ......+||||.+|+++|||+|..+|+||||||||.++|..+.+.|.+.|+++. +|++||+||.
T Consensus 381 ~~~~~~~l~Ik~~s-~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSS 459 (500)
T COG1129 381 AERYIRRLRIKTPS-PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISS 459 (500)
T ss_pred HHHHHHhcCcccCC-ccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeC
Confidence 77788776432211 123346799999999999999999999999999999999999999999999986 6899999999
Q ss_pred Cchhhh-hcCEEEEEeCCEEEEecC
Q 000846 1205 RLSTIQ-KSDTIAVIKNGRVVEQGS 1228 (1255)
Q Consensus 1205 rl~ti~-~~D~I~Vl~~G~ive~G~ 1228 (1255)
.++++. .||||+||.+|+++..=+
T Consensus 460 ElpEll~~~DRIlVm~~Gri~~e~~ 484 (500)
T COG1129 460 ELPELLGLSDRILVMREGRIVGELD 484 (500)
T ss_pred ChHHHHhhCCEEEEEECCEEEEEec
Confidence 999986 699999999999987433
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=603.11 Aligned_cols=193 Identities=24% Similarity=0.315 Sum_probs=161.0
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
-++++|++++|++ ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++ .+|
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4899999999953 25999999999999999999999999999999999999999999986 159
Q ss_pred EEEccCCCC-CcccHHHHHhcCCCCCC-HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 000846 1088 ALVSQEPTL-FAGTIRENIAYGKADAR-ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKN 1165 (1255)
Q Consensus 1088 ~~V~Qdp~L-F~gTIreNl~~g~~~~~-~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~ 1165 (1255)
+|+||++.+ ++.|++||+.++..... +..+.++++..++.+. ......+||||||||++|||||+++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~-----------~~~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERL-----------LDKNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHH-----------HhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999875 56799999987532222 2233444444444332 2334567999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCH
Q 000846 1166 PSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSH 1229 (1255)
Q Consensus 1166 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~ 1229 (1255)
|+||||||||++||+++...+.+.|++..+ ++|+|+|||+++.+.. ||||++|+ |++...|+.
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeeec
Confidence 999999999999999999999999998753 7899999999999865 99999996 488777663
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-61 Score=538.46 Aligned_cols=462 Identities=26% Similarity=0.448 Sum_probs=362.2
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCC-HHHHhcc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH-LKWLRSQ 422 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~r~~ 422 (1255)
.++++|++++|| +..+++||||+|++||++||+|+||+|||||+++|.|+|+|++|+|++||++++--+ .+.+|..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 589999999998 356999999999999999999999999999999999999999999999999998665 4678999
Q ss_pred cEEeccCCccCcc-cHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccC
Q 000846 423 MGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501 (1255)
Q Consensus 423 i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~ 501 (1255)
||+|.|++.|++. ||.|||.+|.+......+........+.+..+++ |++-...+....||-||||||.|-+|||++
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence 9999999999987 9999999998643111111111122334445555 777677778889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhccCCCChhHH
Q 000846 502 PKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNRGEGGEYYQ 579 (1255)
Q Consensus 502 ~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 579 (1255)
|++||||||||-|-|...+.+.+.++++. +|+|||+|||+++++.. |||+-||++|+++..-.+ .
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~--~----------- 225 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP--V----------- 225 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecC--C-----------
Confidence 99999999999999999999999999885 59999999999999865 999999999998653210 0
Q ss_pred HHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCcccccCCCCCCCccc
Q 000846 580 MVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQYDPDDDSLGD 659 (1255)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1255)
. +. ..+
T Consensus 226 -------------------------------~----~~---------------------------------------t~~ 231 (501)
T COG3845 226 -------------------------------A----ET---------------------------------------TEE 231 (501)
T ss_pred -------------------------------C----CC---------------------------------------CHH
Confidence 0 00 000
Q ss_pred cccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHHHHHHHHHH
Q 000846 660 RIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLN 739 (1255)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1255)
. + ..+ +.
T Consensus 232 ---e----------l--------------------------------a~l---Mv------------------------- 238 (501)
T COG3845 232 ---E----------L--------------------------------AEL---MV------------------------- 238 (501)
T ss_pred ---H----------H--------------------------------HHH---hc-------------------------
Confidence 0 0 000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 740 FISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFS 819 (1255)
Q Consensus 740 ~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~ 819 (1255)
T Consensus 239 -------------------------------------------------------------------------------- 238 (501)
T COG3845 239 -------------------------------------------------------------------------------- 238 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHHHHHHHHHHHHhc
Q 000846 820 YIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRG 899 (1255)
Q Consensus 820 ~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~~~~~~~~~~~~~ 899 (1255)
T Consensus 239 -------------------------------------------------------------------------------- 238 (501)
T COG3845 239 -------------------------------------------------------------------------------- 238 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 900 PKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVR 979 (1255)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 979 (1255)
...+.
T Consensus 239 ---------------------------------------G~~v~------------------------------------ 243 (501)
T COG3845 239 ---------------------------------------GREVV------------------------------------ 243 (501)
T ss_pred ---------------------------------------CCccc------------------------------------
Confidence 00000
Q ss_pred HHHHHHcccCCCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc
Q 000846 980 SVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 980 ri~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
.+....+. .|..--++++|++..-. + +.+.+++|||+|++||.+||.|-.|-|-+.|+.+|+|
T Consensus 244 -------~~~~~~~~--------~pg~~vL~V~~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisG 306 (501)
T COG3845 244 -------LRVVKPPS--------TPGEVVLEVEDLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISG 306 (501)
T ss_pred -------cccccCCC--------CCCCeEEEEeeeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhC
Confidence 00000000 01122489999998653 2 3468999999999999999999999999999999999
Q ss_pred ccCCCCceEEECCeec-CCCCHHHHhc-ceEEEccCCC----CCcccHHHHHhcCCCC---------CCHHHHHHHHHHh
Q 000846 1060 FYDPLKGSVFMDEQDI-RNYNLKQLRS-HIALVSQEPT----LFAGTIRENIAYGKAD---------ARESEIKKAAVLA 1124 (1255)
Q Consensus 1060 l~~p~~G~I~idG~di-~~i~~~~lR~-~i~~V~Qdp~----LF~gTIreNl~~g~~~---------~~~~ei~~al~~a 1124 (1255)
+..|.+|+|.++|.|+ ...+....|+ .++|||.|.+ ..+.|+.||+.++... .+..++.+.
T Consensus 307 lr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~---- 382 (501)
T COG3845 307 LRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKF---- 382 (501)
T ss_pred CCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHH----
Confidence 9999999999999997 6677776654 6999999985 5678999999765432 122333222
Q ss_pred cHHHHHHcc---ccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEE
Q 000846 1125 NAHEFISGM---KDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCV 1200 (1255)
Q Consensus 1125 ~l~~~i~~l---p~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI 1200 (1255)
..+.++.+ +.+-++ ...+||||+.||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +|+.|+
T Consensus 383 -a~~li~~fdVr~~~~~~----~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVL 457 (501)
T COG3845 383 -ARELIEEFDVRAPSPDA----PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457 (501)
T ss_pred -HHHHHHHcCccCCCCCc----chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEE
Confidence 22333332 122223 346799999999999999999999999999999999999999999998876 689999
Q ss_pred EEccCchhhhh-cCEEEEEeCCEEEEecCHHH
Q 000846 1201 VVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNE 1231 (1255)
Q Consensus 1201 ~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~e 1231 (1255)
+|+-+|+.+.. ||||.||.+|+++....+++
T Consensus 458 LiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 458 LISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred EEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 99999999865 99999999999998877765
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-60 Score=564.20 Aligned_cols=487 Identities=27% Similarity=0.388 Sum_probs=344.1
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++++|+. +++++|+||++.+|+++||||+||||||||+++|+|...|++|+|...+. -++
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 4899999999963 56999999999999999999999999999999999999999999998752 269
Q ss_pred EEeccCCccCcc-cHHHHhccCCCCCCH--HHHHHHH------------------H-------HhchHHHHhcCCCcccc
Q 000846 424 GLVNQEPVLFAT-SITENILFGKDGASM--DDVISAA------------------K-------AANAHDFITKLPDGYET 475 (1255)
Q Consensus 424 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~--~~~~~~~------------------~-------~~~~~~~i~~l~~g~~t 475 (1255)
+|++|++.+.+. ||.+.+..+...... .+...+. . .+.+...+..| |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 999999999976 999999876532100 0000000 0 02223344444 4443
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEE
Q 000846 476 QVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRT-ANLIMVL 554 (1255)
Q Consensus 476 ~~~~~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl 554 (1255)
. .....+||||||.|++|||||+.+|++|||||||++||.++..++.+.|.+. +| |+|+||||-+++.. |++|+.+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 3 4556799999999999999999999999999999999999999999999865 45 99999999999976 9999999
Q ss_pred eCCEEEEecChhHHhccCCCChhHHHHHHHhhcccCCCCCCCcCCccchhhhhhhhhccCCCCCCcccCCCCCCCCCCCC
Q 000846 555 KAGKVVESGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPF 634 (1255)
Q Consensus 555 ~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1255)
+.|++... .|.|..+++.......... ...+
T Consensus 224 d~g~l~~y-----------~Gny~~~~~~r~~~~~~~~---------------~~~~----------------------- 254 (530)
T COG0488 224 DRGKLTPY-----------KGNYSSYLEQKAERLRQEA---------------AAYE----------------------- 254 (530)
T ss_pred cCCceeEe-----------cCCHHHHHHHHHHHHHHHH---------------HHHH-----------------------
Confidence 99977553 2445444432221100000 0000
Q ss_pred CCCCcCCCCCcccccCCCCCCCccccccccCCCchHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000846 635 SPALSVGTPYSYTIQYDPDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYF 714 (1255)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 714 (1255)
.+ .....
T Consensus 255 ---------------------------~~----~~~~~------------------------------------------ 261 (530)
T COG0488 255 ---------------------------KQ----QKELA------------------------------------------ 261 (530)
T ss_pred ---------------------------HH----HHHHH------------------------------------------
Confidence 00 00000
Q ss_pred cCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhh
Q 000846 715 RTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATE 794 (1255)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D 794 (1255)
T Consensus 262 -------------------------------------------------------------------------------- 261 (530)
T COG0488 262 -------------------------------------------------------------------------------- 261 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 795 ANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAV 874 (1255)
Q Consensus 795 ~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 874 (1255)
T Consensus 262 -------------------------------------------------------------------------------- 261 (530)
T COG0488 262 -------------------------------------------------------------------------------- 261 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000846 875 INHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLIL 954 (1255)
Q Consensus 875 ~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 954 (1255)
.+..|.+++........++..
T Consensus 262 ----------~~~~~i~r~~~~~~~~k~a~s------------------------------------------------- 282 (530)
T COG0488 262 ----------KEQEWIRRGKAAASKAKKAKS------------------------------------------------- 282 (530)
T ss_pred ----------HHHHHHHHHHhccchHHHHHH-------------------------------------------------
Confidence 000000000000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcccCCCCCCCC--CCcccc-ccccccEEEEEEEEECCCCCCCccccce
Q 000846 955 LFTAYVIAEAGSMTSDISKGSNAVRSVFAI-LDRRSEIDPDSP--QGRDIK-RQMRGRIELKNVFFAYPTRPDQMILKGL 1030 (1255)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~-~~~~~~~~~~~~--~~~~~~-~~~~g~I~~~~Vsf~Y~~~~~~~vL~~v 1030 (1255)
-....+++.+- ....+....... ..++.+ ...+-.++++|++++|+.. +++++++
T Consensus 283 -------------------r~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~--~~l~~~~ 341 (530)
T COG0488 283 -------------------RIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG--RLLLKDL 341 (530)
T ss_pred -------------------HHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCC--ceeecCc
Confidence 00000111100 000111000000 000000 1123459999999999642 5799999
Q ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceEEEccCC-CCC-cccHHHHHhcC
Q 000846 1031 SLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEP-TLF-AGTIRENIAYG 1108 (1255)
Q Consensus 1031 s~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp-~LF-~gTIreNl~~g 1108 (1255)
||.|.+|++||||||||+|||||+++|.|-..|.+|+|.+.-. -+|||.+|+- .++ +.|+-|++.-.
T Consensus 342 s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~igyf~Q~~~~l~~~~t~~d~l~~~ 410 (530)
T COG0488 342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKIGYFDQHRDELDPDKTVLEELSEG 410 (530)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEEEEEEehhhhcCccCcHHHHHHhh
Confidence 9999999999999999999999999999999999999998642 3699999998 444 34999999766
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHH
Q 000846 1109 KADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQE 1188 (1255)
Q Consensus 1109 ~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~ 1188 (1255)
.|+..+.++...+...+...- -..++ ...||||||-|+.||+.++.+|.+|||||||.+||.+|-..+.+
T Consensus 411 ~~~~~e~~~r~~L~~f~F~~~------~~~~~----v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~ 480 (530)
T COG0488 411 FPDGDEQEVRAYLGRFGFTGE------DQEKP----VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEE 480 (530)
T ss_pred CccccHHHHHHHHHHcCCChH------HHhCc----hhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHH
Confidence 655456667666655543221 12333 45699999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEe-cCHHHHHhh
Q 000846 1189 ALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQ-GSHNELVAL 1235 (1255)
Q Consensus 1189 ~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~-G~~~eLl~~ 1235 (1255)
+|.+. ..|||+|||+.+.+.. |++|+++++ ++.++ |++++.++.
T Consensus 481 aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 481 ALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred HHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 99886 4599999999999977 999999999 88887 899988764
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=476.56 Aligned_cols=238 Identities=26% Similarity=0.438 Sum_probs=224.3
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcc
Q 000846 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086 (1255)
Q Consensus 1007 g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1086 (1255)
|.|+|+||+++|+.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|++||+++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 569999999999732 3469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred eEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 000846 1087 IALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNP 1166 (1255)
Q Consensus 1087 i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p 1166 (1255)
|+||||+|.+|++|+++|+.+.. ..++++++++++.+++.+++..+|++||+.++|+|.+||||||||+|||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999996433 25788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhhhcCchhHHHHh
Q 000846 1167 SILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIK 1246 (1255)
Q Consensus 1167 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y~~l~~ 1246 (1255)
+||||||||++||+.+++.+++.|++.++++|+|+||||++++..||||+||++|++++.|+|++|++. ++.|++++.
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~--~~~~~~~~~ 235 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE--KSHFKQAIS 235 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC--cHHHHHHHh
Confidence 999999999999999999999999998889999999999999999999999999999999999999985 689999987
Q ss_pred hhc
Q 000846 1247 PQG 1249 (1255)
Q Consensus 1247 ~~~ 1249 (1255)
+..
T Consensus 236 ~~~ 238 (275)
T cd03289 236 PSD 238 (275)
T ss_pred hcc
Confidence 664
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=420.83 Aligned_cols=226 Identities=32% Similarity=0.517 Sum_probs=193.7
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCC-CCHHHHhcc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRR-LHLKWLRSQ 422 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~-~~~~~~r~~ 422 (1255)
.|+++||+++|++ ..||+|||++|++||.++|+||||||||||+++|.|+-+|++|+|.+||.++.. .+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4899999999973 469999999999999999999999999999999999999999999999987743 378899999
Q ss_pred cEEeccCCccCcc-cHHHHhccCCC---CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHh
Q 000846 423 MGLVNQEPVLFAT-SITENILFGKD---GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARAL 498 (1255)
Q Consensus 423 i~~v~Q~~~l~~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal 498 (1255)
+|+|+|+..||+. ||.||+.++.- ..+.++..+ .+.+.+.++ |+.......+.+|||||||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~-----~A~~lL~~V--GL~~ka~~yP~qLSGGQqQRVAIARAL 151 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEARE-----KALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 151 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHH-----HHHHHHHHc--CchhhhhhCccccCcHHHHHHHHHHHH
Confidence 9999999999986 99999998742 122222221 123344444 666666666789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhccCCCCh
Q 000846 499 IRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNRGEGGE 576 (1255)
Q Consensus 499 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~ 576 (1255)
..+|+++++|||||||||+....+.+.++++. +|.|.|+|||.+.+.+. ||||+.|++|+|+++|+|+++..++....
T Consensus 152 aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~R 231 (240)
T COG1126 152 AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSER 231 (240)
T ss_pred cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCHH
Confidence 99999999999999999999999999999885 58999999999999976 99999999999999999999998754443
Q ss_pred hHH
Q 000846 577 YYQ 579 (1255)
Q Consensus 577 ~~~ 579 (1255)
..+
T Consensus 232 ~~~ 234 (240)
T COG1126 232 TRQ 234 (240)
T ss_pred HHH
Confidence 333
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-50 Score=405.76 Aligned_cols=214 Identities=31% Similarity=0.527 Sum_probs=187.1
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecC-CCCHHHHhcc
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIR-NYNLKQLRSH 1086 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~-~i~~~~lR~~ 1086 (1255)
-|+++||+.+|. +..||+|||++|++||.++|+||||||||||+++|.+|-+|++|+|.+||.++. ..+...+|++
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 389999999996 346999999999999999999999999999999999999999999999998774 3378899999
Q ss_pred eEEEccCCCCCc-ccHHHHHhcCCC---CCCHHH----HHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHH
Q 000846 1087 IALVSQEPTLFA-GTIRENIAYGKA---DARESE----IKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIAL 1158 (1255)
Q Consensus 1087 i~~V~Qdp~LF~-gTIreNl~~g~~---~~~~~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlal 1158 (1255)
+|+|+|+..||. .|+.||+.++-- ..+.+| -.+-++++|+.|-.... +.+||||||||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----------P~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAY-----------PAQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhC-----------ccccCcHHHHHHHH
Confidence 999999999997 599999987631 222222 22334555555544443 56899999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1159 ARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1159 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
||||.-+|+++++|||||||||+.-..+.+.++++. .|.|.|+|||.+...++ ||||+.||+|+++|.|+|+++..+
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999999986 58899999999999987 899999999999999999999986
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=452.54 Aligned_cols=231 Identities=30% Similarity=0.494 Sum_probs=200.7
Q ss_pred cccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCeecC
Q 000846 1002 KRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDIR 1076 (1255)
Q Consensus 1002 ~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~ 1076 (1255)
.|+..+.|+|+|++++|+.. +.++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.|||+++.
T Consensus 74 ~~~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 74 DFNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred CCCcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 36667889999999999642 3469999999999999999999999999999999999997 57999999999997
Q ss_pred --CCCHHHHhcceEEEccCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHH
Q 000846 1077 --NYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQ 1152 (1255)
Q Consensus 1077 --~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 1152 (1255)
.+++..+|++++||||+|.+|++|++|||.++.. ..++++.+++.....++.. .++.++++.++++|.+|||||
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~~l~~~~~~~~~~LSgGq 230 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSA--ALWDEVKDDLDKAGNALSGGQ 230 (329)
T ss_pred ccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHc--CCcchhhhhhhCCcccCCHHH
Confidence 4566789999999999999999999999997632 2444554433222222211 144567788999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHH
Q 000846 1153 KQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNE 1231 (1255)
Q Consensus 1153 kQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~e 1231 (1255)
|||+|||||++++|+|||||||||+||+++.+.+++.|++.++++|+|+|||+++++.+ ||||+||++|+|+|.|+|++
T Consensus 231 kqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~ 310 (329)
T PRK14257 231 QQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKT 310 (329)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999889999999999999988 99999999999999999999
Q ss_pred HHhh
Q 000846 1232 LVAL 1235 (1255)
Q Consensus 1232 Ll~~ 1235 (1255)
+...
T Consensus 311 l~~~ 314 (329)
T PRK14257 311 IFIH 314 (329)
T ss_pred HhcC
Confidence 9875
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=422.66 Aligned_cols=227 Identities=32% Similarity=0.531 Sum_probs=194.6
Q ss_pred EEEEeEEEEcCCC--CCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCH---HHH
Q 000846 345 IEFRDVYFCYPSR--PDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHL---KWL 419 (1255)
Q Consensus 345 i~~~~v~~~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~ 419 (1255)
|+++||++.|+.. +...+|+||||+|++||+.+|+|+||+|||||++++.++-.|++|+|.+||+++..++. ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999852 23569999999999999999999999999999999999999999999999999988764 567
Q ss_pred hcccEEeccCCccCc-ccHHHHhccCCCCCC--HH----HHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHH
Q 000846 420 RSQMGLVNQEPVLFA-TSITENILFGKDGAS--MD----DVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRI 492 (1255)
Q Consensus 420 r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~--~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri 492 (1255)
|++||+++|++.|++ .||.+|++|+.+-+. .+ ++.+.++.+ |+....+..+.+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV-----------gL~dk~~~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV-----------GLSDKADRYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc-----------CChhhhccCchhcCcchhhHH
Confidence 789999999999997 599999999865222 22 233333333 555555666789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000846 493 AIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELM 569 (1255)
Q Consensus 493 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 569 (1255)
+|||||..+|+||+.|||||||||+|.+.|.+.|++..+ |.|+++|||.++.++. |||+.||++|+++|+|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999998743 8999999999999976 9999999999999999999999
Q ss_pred ccCCCChhHHHHH
Q 000846 570 NRGEGGEYYQMVE 582 (1255)
Q Consensus 570 ~~~~~~~~~~~~~ 582 (1255)
.+++...-.+++.
T Consensus 231 ~~Pk~~~t~~fi~ 243 (339)
T COG1135 231 ANPKHAITQEFIG 243 (339)
T ss_pred cCcchHHHHHHHH
Confidence 8765444444443
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=419.69 Aligned_cols=228 Identities=36% Similarity=0.542 Sum_probs=192.5
Q ss_pred EEEEEEEEECCCC--CCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCH---HHH
Q 000846 1009 IELKNVFFAYPTR--PDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNL---KQL 1083 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~--~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~l 1083 (1255)
|+|+||++.|+.. ....+|+||||+|++||..||+|+||+|||||++++.++-.|++|+|.+||.|+..++- ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999852 12469999999999999999999999999999999999999999999999998887765 556
Q ss_pred hcceEEEccCCCCCc-ccHHHHHhcCCC--CCCHHH----HHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHH
Q 000846 1084 RSHIALVSQEPTLFA-GTIRENIAYGKA--DARESE----IKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRI 1156 (1255)
Q Consensus 1084 R~~i~~V~Qdp~LF~-gTIreNl~~g~~--~~~~~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrl 1156 (1255)
|++||+|+|++.|++ .|+.+|++|+.. ..+.++ +.+.++.+|+.|+ .+....+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk-----------~~~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDK-----------ADRYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhh-----------hccCchhcCcchhhHH
Confidence 789999999999998 799999998743 233333 3344444444433 3445689999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHH
Q 000846 1157 ALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1157 alARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl 1233 (1255)
+|||||..+|+||+.|||||||||+|-+.|.+.|++.- -|-|+++|||.|+.+++ |||+.||++|+|+|.|+-.++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999998864 38899999999999987 9999999999999999999999
Q ss_pred hhhcCchhHHHHhh
Q 000846 1234 ALSRGGAYYSLIKP 1247 (1255)
Q Consensus 1234 ~~~~~g~y~~l~~~ 1247 (1255)
.+.+...=.+++..
T Consensus 231 ~~Pk~~~t~~fi~~ 244 (339)
T COG1135 231 ANPKHAITQEFIGE 244 (339)
T ss_pred cCcchHHHHHHHHh
Confidence 86223333445443
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=432.88 Aligned_cols=236 Identities=24% Similarity=0.439 Sum_probs=218.1
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcc
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ 422 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 422 (1255)
|.|+++|++++|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|++||.++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 469999999999742 3469999999999999999999999999999999999997 78999999999999999999999
Q ss_pred cEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 000846 423 MGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDP 502 (1255)
Q Consensus 423 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~ 502 (1255)
|+||||+|.+|++|+++|+.... ..++++++++++.+++.+++..+|+++++.++++|.+||||||||++||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999996332 24678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhccCCCChhHHHHH
Q 000846 503 KILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVE 582 (1255)
Q Consensus 503 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 582 (1255)
+||||||||++||+.+++.+++.|++..+++|+|+||||++++..||||++|++|++++.|+|++++++ .+.|++++.
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~--~~~~~~~~~ 235 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE--KSHFKQAIS 235 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC--cHHHHHHHh
Confidence 999999999999999999999999988779999999999999988999999999999999999999884 466667665
Q ss_pred H
Q 000846 583 L 583 (1255)
Q Consensus 583 ~ 583 (1255)
.
T Consensus 236 ~ 236 (275)
T cd03289 236 P 236 (275)
T ss_pred h
Confidence 4
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-49 Score=403.57 Aligned_cols=220 Identities=33% Similarity=0.570 Sum_probs=190.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
|+|+|||++|. +..+++|+||+|++||+++++|||||||||++++|.|+++|++|+|++||+++++++...+|++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999997 356999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCccCcc-cHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccc--hhcCCCCCCChHHHHHHHHHHHhc
Q 000846 425 LVNQEPVLFAT-SITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYET--QVGQLGFQMSGGQKQRIAIARALI 499 (1255)
Q Consensus 425 ~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t--~~~~~g~~LSgGqrqri~lARal~ 499 (1255)
||-|...||+. ||.|||.+-.. ..+.+++.+ .+++.+..+ |++. ...+.+.+|||||+|||.+||||.
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~-----r~~ELl~lv--gL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKK-----RADELLDLV--GLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHH-----HHHHHHHHh--CCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 99999999976 99999987432 112222211 122333322 4432 344556799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhccCCC
Q 000846 500 RDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNRGEG 574 (1255)
Q Consensus 500 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~-~~~d~i~vl~~G~i~~~g~~~~l~~~~~~ 574 (1255)
.+|+|+++|||++||||.++..+|+.+.++.+ |+|+|+|||++++. +.+|||.+|++|+++..++|++++.++.+
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan 229 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAN 229 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccH
Confidence 99999999999999999999999999998865 89999999999986 66999999999999999999999987544
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-49 Score=392.45 Aligned_cols=221 Identities=35% Similarity=0.524 Sum_probs=198.7
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCc-----cEEEECCeecCC--CC
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVE-----GEVLLDGYKIRR--LH 415 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~-----G~i~~~g~~~~~--~~ 415 (1255)
..++++|+++.|++ ..+|+|||++|++++++|++|||||||||+++++.|+.+..+ |+|.++|+|+.+ .+
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 36899999999973 469999999999999999999999999999999999998876 999999999976 47
Q ss_pred HHHHhcccEEeccCCccCcccHHHHhccCCCC------CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHH
Q 000846 416 LKWLRSQMGLVNQEPVLFATSITENILFGKDG------ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQK 489 (1255)
Q Consensus 416 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqr 489 (1255)
...+|++||+|+|.|.-|+.||+||+.||..- .-++-+.++++.+.+++-++. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 88999999999999999999999999998531 113447788889988877653 35567889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 000846 490 QRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 490 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l 568 (1255)
||+||||||.-+|+|||||||||||||.+...|.+.|.+++++-|+|+|||.+.... .+|+..++..|+++|.|+.+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 999999999999999999999999999999999999999999999999999999875 5999999999999999999999
Q ss_pred hccCC
Q 000846 569 MNRGE 573 (1255)
Q Consensus 569 ~~~~~ 573 (1255)
..++.
T Consensus 236 F~~P~ 240 (253)
T COG1117 236 FTNPK 240 (253)
T ss_pred hcCcc
Confidence 87643
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=391.04 Aligned_cols=218 Identities=33% Similarity=0.537 Sum_probs=198.8
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCC-----ceEEECCeecCC--CCH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLK-----GSVFMDEQDIRN--YNL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~-----G~I~idG~di~~--i~~ 1080 (1255)
.++++|+++-|. +..+|+|||++|++++.+|++|||||||||++++|.|+.|... |+|.+||.||-+ ++.
T Consensus 7 ~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 589999999996 3469999999999999999999999999999999999999875 999999999976 578
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC------CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHH
Q 000846 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKA------DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQ 1154 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~------~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQ 1154 (1255)
..||++||+|+|.|.-|..||+||+.||.. ..-||-++++++.|.+||-+.. .| .+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---rL----~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---RL----HKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---Hh----hCCccCCChhHHH
Confidence 999999999999999999999999999832 2235668899999999998853 34 4567889999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh-hhcCEEEEEeCCEEEEecCHHHHH
Q 000846 1155 RIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTI-QKSDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1155 rlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti-~~~D~I~Vl~~G~ive~G~~~eLl 1233 (1255)
||||||||.-+|+|||||||||||||.+-..|.+.|.++.++-|+|+|||.+.-. +-+|+...+-.|+++|+|.-+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 9999999999999999999999999999999999999999999999999999986 458999999999999999999998
Q ss_pred hh
Q 000846 1234 AL 1235 (1255)
Q Consensus 1234 ~~ 1235 (1255)
.+
T Consensus 237 ~~ 238 (253)
T COG1117 237 TN 238 (253)
T ss_pred cC
Confidence 75
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=430.94 Aligned_cols=198 Identities=29% Similarity=0.382 Sum_probs=161.7
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|.++||+|+|++.+ .++++++|-|.++++||+|||||+|||||++++.|...|+.|.|.-.-. .++
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKL 455 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccc
Confidence 499999999997543 6899999999999999999999999999999999999999998875432 234
Q ss_pred EEEccCC---CCCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHc
Q 000846 1088 ALVSQEP---TLFAGTIRENIAYGKA-DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAIL 1163 (1255)
Q Consensus 1088 ~~V~Qdp---~LF~gTIreNl~~g~~-~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALl 1163 (1255)
++..|+- .-++.|.-|++.---+ .-..+++...+...|+..-... .++ .+||+|||.|++.||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~------~p~----~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQV------VPM----SQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccc------cch----hhcccccchhHHHHHHHh
Confidence 4444543 3567788888854333 2456677777777776533322 222 579999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEE-ecCHH
Q 000846 1164 KNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVE-QGSHN 1230 (1255)
Q Consensus 1164 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive-~G~~~ 1230 (1255)
+.|.||||||||++||.+|-..+.++|.+. ..+||+|+|+...|.+ +++|.+.++|.+.. .|...
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHH
Confidence 999999999999999999999999999887 5589999999999977 89999999988865 35543
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=393.96 Aligned_cols=220 Identities=32% Similarity=0.531 Sum_probs=190.4
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+|+|||++|. ++.+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++..+||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999996 456999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCc-ccHHHHHhcCCC--CCCHHH----HHHHHHHhcHH--HHHHccccccccccCCCCCCCChHHHHHHHHH
Q 000846 1089 LVSQEPTLFA-GTIRENIAYGKA--DARESE----IKKAAVLANAH--EFISGMKDGYDTYCGERGVQLSGGQKQRIALA 1159 (1255)
Q Consensus 1089 ~V~Qdp~LF~-gTIreNl~~g~~--~~~~~e----i~~al~~a~l~--~~i~~lp~gldt~vge~G~~LSgGQkQrlalA 1159 (1255)
||-|.--||. .||.|||++--. .-+.++ +.+-++.+++. +|.. .-..+|||||+||+.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~-----------RyP~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYAD-----------RYPHELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhh-----------cCchhcCcchhhHHHHH
Confidence 9999999997 599999975311 223333 33444444442 2333 33568999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEEEecCHHHHHhhh
Q 000846 1160 RAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTI-QKSDTIAVIKNGRVVEQGSHNELVALS 1236 (1255)
Q Consensus 1160 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti-~~~D~I~Vl~~G~ive~G~~~eLl~~~ 1236 (1255)
|||..+|+||++|||.+||||.|...+|+-+.+..+ ++|+|+|||++++. +-+|||+||++|+++.+|+|++++++
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~- 226 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN- 226 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC-
Confidence 999999999999999999999999999999988754 89999999999886 55999999999999999999999986
Q ss_pred cCchhHH
Q 000846 1237 RGGAYYS 1243 (1255)
Q Consensus 1237 ~~g~y~~ 1243 (1255)
+...|-+
T Consensus 227 Pan~FV~ 233 (309)
T COG1125 227 PANDFVE 233 (309)
T ss_pred ccHHHHH
Confidence 5555543
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=416.23 Aligned_cols=235 Identities=46% Similarity=0.747 Sum_probs=217.9
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++||+++|+.. +.++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999642 346999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 000846 1089 LVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSI 1168 (1255)
Q Consensus 1089 ~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~I 1168 (1255)
|+||++.+|+.|++|||.++.+..+.+++.++++..++.+++..+|.|+++..+..+.+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999887654556677778888899999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhhhcCchhHHHHh
Q 000846 1169 LLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIK 1246 (1255)
Q Consensus 1169 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y~~l~~ 1246 (1255)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++++. .+.|+.+++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~--~~~~~~~~~ 235 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE--NGLYAYLYQ 235 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc--cChHHHHHh
Confidence 9999999999999999999999998778999999999999988999999999999999999999875 788888775
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=429.54 Aligned_cols=227 Identities=31% Similarity=0.493 Sum_probs=197.4
Q ss_pred CCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeecCC
Q 000846 339 SYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKIRR 413 (1255)
Q Consensus 339 ~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~ 413 (1255)
|+..+.|+++|++++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++..
T Consensus 75 ~~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 4556789999999999642 3469999999999999999999999999999999999996 579999999999974
Q ss_pred --CCHHHHhcccEEeccCCccCcccHHHHhccCCC--CCCHHHHH-----HHHHHhchHHHHhcCCCcccchhcCCCCCC
Q 000846 414 --LHLKWLRSQMGLVNQEPVLFATSITENILFGKD--GASMDDVI-----SAAKAANAHDFITKLPDGYETQVGQLGFQM 484 (1255)
Q Consensus 414 --~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~~~~~~~-----~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 484 (1255)
.+...+|+.++||||+|++|++|++|||.|+.. ..++++.+ ++++.++ +++++++.++++|.+|
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~L 226 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNAL 226 (329)
T ss_pred cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccC
Confidence 445678999999999999999999999998642 22333332 2233332 4456678899999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 000846 485 SGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESG 563 (1255)
Q Consensus 485 SgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g 563 (1255)
|||||||++||||++++|+|||||||||+||+++.+.+++.|+++.+++|+|+|||+++++.. ||||++|++|++++.|
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999998888999999999999876 9999999999999999
Q ss_pred ChhHHhccCC
Q 000846 564 SHNELMNRGE 573 (1255)
Q Consensus 564 ~~~~l~~~~~ 573 (1255)
+++++...+.
T Consensus 307 ~~~~l~~~~~ 316 (329)
T PRK14257 307 ETKTIFIHPK 316 (329)
T ss_pred CHHHHhcCCC
Confidence 9999987543
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=416.84 Aligned_cols=241 Identities=31% Similarity=0.530 Sum_probs=222.3
Q ss_pred ccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHh
Q 000846 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLR 1084 (1255)
Q Consensus 1005 ~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR 1084 (1255)
..|.|+++|++++|+.. +.++|+|+||+|+|||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 45789999999999742 24699999999999999999999999999999999999999999999999999999888999
Q ss_pred cceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 000846 1085 SHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILK 1164 (1255)
Q Consensus 1085 ~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr 1164 (1255)
++|+|++|+|.+|++|++||+.+.. ....++++++++..++.+++..+|.|+++.+++.+.+||||||||++||||+++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999996543 234567888888899999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhhhcCchhHHH
Q 000846 1165 NPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSL 1244 (1255)
Q Consensus 1165 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y~~l 1244 (1255)
+|++|||||||++||+++++.+.+.+++..+++|+|++||+++.+..||+|++|++|++++.|+++++++. .++.|+.+
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 252 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ-EDGVFASL 252 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cchHHHHH
Confidence 99999999999999999999999999988778999999999999999999999999999999999999875 57889888
Q ss_pred Hhhh
Q 000846 1245 IKPQ 1248 (1255)
Q Consensus 1245 ~~~~ 1248 (1255)
+..+
T Consensus 253 ~~~~ 256 (257)
T cd03288 253 VRTD 256 (257)
T ss_pred Hhcc
Confidence 7643
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=381.31 Aligned_cols=470 Identities=20% Similarity=0.231 Sum_probs=351.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 67 LLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISN 146 (1255)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~~ 146 (1255)
+.++.++..+.+.+........++.+..++|.++.++++..|+.-+++ .++++++.++++|+..|. +-...++.
T Consensus 54 f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier-----~~~~rlla~L~~Dvr~IS-f~~s~lp~ 127 (546)
T COG4615 54 FLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER-----LGSARLLAGLTSDVRNIS-FAFSRLPE 127 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-----hcccchhhhhccccccee-ehHhhhHH
Confidence 334444445556666777788899999999999999999999999997 677899999999999999 44456788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHH
Q 000846 147 TLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHE 226 (1255)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~vk~~~~e~~ 226 (1255)
+.+++..++++.+.+.|+|+++.++.++++.+.++...+...+..+......+..++..+..+..+.|-+..+......+
T Consensus 128 ~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~ 207 (546)
T COG4615 128 LVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAE 207 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHH
Confidence 99999999999999999999998888888888888888888888888888888889999999999999998877643332
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 227 --TLIRFSNALQKTMELGIKQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALP 303 (1255)
Q Consensus 227 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 303 (1255)
..++|...-++.++................ .+++..+.+.||+.... +.-+.....+..+.+++.-.|+.++..
T Consensus 208 ~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~vg 284 (546)
T COG4615 208 YVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAVG 284 (546)
T ss_pred HHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHHh
Confidence 223333322222221111111100000111 23333444555554322 222222333344555566778999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCC
Q 000846 304 NLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSG 383 (1255)
Q Consensus 304 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sG 383 (1255)
.++.+..|.+|.+||.++-..|+..+-......+. -..|+++||.|+|+.. ..-+..||++|++||++-|+|.||
T Consensus 285 ilP~l~~AqvA~~kiakle~~~~~a~~~~~q~~p~---~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NG 359 (546)
T COG4615 285 ILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPD---WKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNG 359 (546)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCccccCCCCCcCCc---ccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCC
Confidence 99999999999999988765443322111111111 2369999999999743 256889999999999999999999
Q ss_pred CcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCC-CCHHHHHHHHHHhch
Q 000846 384 SGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDG-ASMDDVISAAKAANA 462 (1255)
Q Consensus 384 sGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~ 462 (1255)
|||||++++|.|+|.|++|+|++||++++.-++++.|+-++-|+-|.+||+.++ |.+. ++.+.+..-++.-.+
T Consensus 360 sGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel 433 (546)
T COG4615 360 SGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLEL 433 (546)
T ss_pred CcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998765 4333 556555544443333
Q ss_pred HHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEEec
Q 000846 463 HDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV--SKGRTTLIIAH 540 (1255)
Q Consensus 463 ~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~--~~~~t~i~itH 540 (1255)
.... .+-+|--+ ...||-|||.|+|+--|++-+.||++|||=-+--||.-++.+.+.+... .+|||++.|||
T Consensus 434 ~~kt-sl~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsH 507 (546)
T COG4615 434 AHKT-SLNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH 507 (546)
T ss_pred hhhh-cccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEec
Confidence 2222 22222111 1469999999999999999999999999999999999999988877544 34999999999
Q ss_pred CchhhhhcCEEEEEeCCEEEEe
Q 000846 541 RLSTIRTANLIMVLKAGKVVES 562 (1255)
Q Consensus 541 ~~~~~~~~d~i~vl~~G~i~~~ 562 (1255)
|-.....|||++.|++|+++|.
T Consensus 508 Dd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 508 DDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred CchhhhhHHHHHHHhcCceeec
Confidence 9999999999999999999985
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=447.60 Aligned_cols=213 Identities=26% Similarity=0.416 Sum_probs=173.0
Q ss_pred EEEEEEEEECCC-CCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCeecCCCCHHHHhc
Q 000846 1009 IELKNVFFAYPT-RPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP--LKGSVFMDEQDIRNYNLKQLRS 1085 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~-~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~idG~di~~i~~~~lR~ 1085 (1255)
...+|+.+.-+. ...+..|+|||=-++||.-+|++|.||||||||++.|.+=..- .+|+|+|||.+..+ +..++
T Consensus 788 ~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R 864 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFAR 864 (1391)
T ss_pred EEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhcc
Confidence 344555544331 1235689999999999999999999999999999999987532 47999999999765 78999
Q ss_pred ceEEEccCC-CCCcccHHHHHhcCC----C-CCCHHH----HHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHH
Q 000846 1086 HIALVSQEP-TLFAGTIRENIAYGK----A-DARESE----IKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQR 1155 (1255)
Q Consensus 1086 ~i~~V~Qdp-~LF~gTIreNl~~g~----~-~~~~~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQr 1155 (1255)
.+|||.|++ ++-.-||||-|.|.. | +.+++| ++++.+..++.++ =|..||.-|..||..||.|
T Consensus 865 ~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKr 937 (1391)
T KOG0065|consen 865 VSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKR 937 (1391)
T ss_pred ccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhce
Confidence 999999987 566679999997652 2 334433 3444444444433 3566898899999999999
Q ss_pred HHHHHHHccCC-CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchh--hhhcCEEEEEe-CCEEEEecCHH
Q 000846 1156 IALARAILKNP-SILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLST--IQKSDTIAVIK-NGRVVEQGSHN 1230 (1255)
Q Consensus 1156 lalARALlr~p-~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~t--i~~~D~I~Vl~-~G~ive~G~~~ 1230 (1255)
|.||--|+.|| .||+||||||+||+++...|.+.+++.. .|+||++.-|.++. .+..|+++.|+ .|+.|..|+..
T Consensus 938 LTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 938 LTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred eeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 99999999999 9999999999999999999999999986 69999999999886 47799999995 68999998754
Q ss_pred H
Q 000846 1231 E 1231 (1255)
Q Consensus 1231 e 1231 (1255)
+
T Consensus 1018 ~ 1018 (1391)
T KOG0065|consen 1018 E 1018 (1391)
T ss_pred c
Confidence 4
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-46 Score=380.34 Aligned_cols=215 Identities=33% Similarity=0.564 Sum_probs=187.1
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCH---HHH
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHL---KWL 419 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~ 419 (1255)
..|++++|+++|++ +.+++||||+|++||+++|+||||||||||+++|.|+..|++|+|.++|+++.+++. ..+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 46999999999974 469999999999999999999999999999999999999999999999999998875 357
Q ss_pred hcccEEeccCCccCcc-cHHHHhccCCCC---CCHHHH----HHHHHHhchHHH-HhcCCCcccchhcCCCCCCChHHHH
Q 000846 420 RSQMGLVNQEPVLFAT-SITENILFGKDG---ASMDDV----ISAAKAANAHDF-ITKLPDGYETQVGQLGFQMSGGQKQ 490 (1255)
Q Consensus 420 r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~---~~~~~~----~~~~~~~~~~~~-i~~l~~g~~t~~~~~g~~LSgGqrq 490 (1255)
|+++|+++|.-.||+. ||+||+.|...+ ...+.+ ...++.+++... .+. -++.||||+|.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~-----------~PsELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADL-----------YPSELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhh-----------CchhhcchHHH
Confidence 9999999999999987 999999986432 222222 223344444333 233 34799999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 000846 491 RIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNE 567 (1255)
Q Consensus 491 ri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~ 567 (1255)
|+|||||+..||+|+++|||||+|||.+...+-+.|+++++ |.|+++|||+++++.. ||||+++.+|+|+.+|+++|
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998865 8999999999999865 99999999999999999999
Q ss_pred Hhcc
Q 000846 568 LMNR 571 (1255)
Q Consensus 568 l~~~ 571 (1255)
+.+.
T Consensus 233 l~~s 236 (263)
T COG1127 233 LLAS 236 (263)
T ss_pred HHhC
Confidence 9875
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-46 Score=397.75 Aligned_cols=214 Identities=35% Similarity=0.533 Sum_probs=189.6
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.++++|++|+|++ +++|+|+||++++||+++|+||||||||||+|+|+|+.+|.+|+|++||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4789999999973 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCcc-CcccHHHHhccCCCCC-------C--H-HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHH
Q 000846 424 GLVNQEPVL-FATSITENILFGKDGA-------S--M-DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRI 492 (1255)
Q Consensus 424 ~~v~Q~~~l-~~~ti~~ni~~~~~~~-------~--~-~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri 492 (1255)
|||||++.. |.-||+|-+.+|+... + | +.+.++++..++.++. .+.-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la-----------~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA-----------DRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHh-----------cCcccccChhHHHHH
Confidence 999999754 5569999999986421 1 2 2355666666655554 344568999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHh
Q 000846 493 AIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELM 569 (1255)
Q Consensus 493 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~-~~~d~i~vl~~G~i~~~g~~~~l~ 569 (1255)
.|||||+++|+||+||||||+||...+-.+++.++++. +|+|+|+|.|+++.. +.||++++|++|+++.+|+|+|++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999985 389999999999986 679999999999999999999988
Q ss_pred cc
Q 000846 570 NR 571 (1255)
Q Consensus 570 ~~ 571 (1255)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 63
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=403.58 Aligned_cols=235 Identities=55% Similarity=0.828 Sum_probs=217.8
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++|++++|++ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 578999999963 245999999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 000846 1089 LVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSI 1168 (1255)
Q Consensus 1089 ~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~I 1168 (1255)
|+||+|.+|++|++||+.++.+..+++++.++++..++.+++..+|.|+++.+.....+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987665667778888888899999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhhhcCchhHHHHhh
Q 000846 1169 LLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKP 1247 (1255)
Q Consensus 1169 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~ 1247 (1255)
|||||||++||+++...+.+.|.+..+++|+|++||+++.+..||++++|++|++++.|+++++... .+.|..++..
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~--~~~~~~~~~~ 235 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK--GGLYAEMWKA 235 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc--ccHHHHHHhc
Confidence 9999999999999999999999988778899999999999988999999999999999999999764 6777776654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=410.09 Aligned_cols=215 Identities=34% Similarity=0.547 Sum_probs=191.9
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++||+++|++. .+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.|||.++++++++. +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999732 2999999999999999999999999999999999999999999999999999998875 689
Q ss_pred EEeccCCccCcc-cHHHHhccCCCCC------CHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHH
Q 000846 424 GLVNQEPVLFAT-SITENILFGKDGA------SMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIAR 496 (1255)
Q Consensus 424 ~~v~Q~~~l~~~-ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lAR 496 (1255)
|+|+|++.||+. ||+|||.||.... .++++.++++..++.+.+++.| .+|||||||||||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 999999999986 9999999986532 2445667777776666666655 699999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhccCC
Q 000846 497 ALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNRGE 573 (1255)
Q Consensus 497 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~~ 573 (1255)
||+++|++++||||+|+||++.+..+...|+++.+ |.|+|+||||..++. .+|||+||++|+|.+.|+|.|+..++.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999999999988754 789999999998875 599999999999999999999987654
Q ss_pred C
Q 000846 574 G 574 (1255)
Q Consensus 574 ~ 574 (1255)
+
T Consensus 227 n 227 (338)
T COG3839 227 N 227 (338)
T ss_pred c
Confidence 3
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=403.41 Aligned_cols=233 Identities=57% Similarity=0.901 Sum_probs=214.4
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++|++++|+++ +.++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999643 236999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 000846 1089 LVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSI 1168 (1255)
Q Consensus 1089 ~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~I 1168 (1255)
|+||+|.+|..|++||+.++.+..+.+++.+.++..++.+++..+|.|+++.++....+||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655556677777888899999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhhhcCchhHHH
Q 000846 1169 LLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSL 1244 (1255)
Q Consensus 1169 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y~~l 1244 (1255)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|++++++.. .+.|+.+
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~--~~~~~~~ 233 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ--GGVYAKL 233 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc--Ccchhhh
Confidence 9999999999999999999999998888999999999999988999999999999999999999875 5656543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-45 Score=403.08 Aligned_cols=236 Identities=67% Similarity=1.016 Sum_probs=215.3
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++|++++|+...+.++|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997432356999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 000846 1089 LVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSI 1168 (1255)
Q Consensus 1089 ~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~I 1168 (1255)
|+||+|.+|+.|++||+.++.+....+++.+.++..++.+++..+|.|+++.++....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999887655556677777888899999999999999999998999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhhhcCchhHHHHh
Q 000846 1169 LLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIK 1246 (1255)
Q Consensus 1169 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y~~l~~ 1246 (1255)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++... .+.++.++.
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~--~~~~~~~~~ 236 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ--KGVYAKLVK 236 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc--ChhHHHHhh
Confidence 9999999999999999999999988778999999999999989999999999999999999999764 566666553
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=359.04 Aligned_cols=209 Identities=33% Similarity=0.564 Sum_probs=187.8
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
|.+++|.|+|...+ -.++++|++||++||+||||||||||+++++||..|.+|+|.|+|+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56889999996432 367899999999999999999999999999999999999999999999877664 45699
Q ss_pred EeccCCccCcc-cHHHHhccCCCC------CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHH
Q 000846 425 LVNQEPVLFAT-SITENILFGKDG------ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARA 497 (1255)
Q Consensus 425 ~v~Q~~~l~~~-ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARa 497 (1255)
+++||..||.. ||++||.+|... ...+++..++..+++.++.+++|. +||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 99999999987 999999998642 234568889999999999999985 899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhcc
Q 000846 498 LIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 498 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
|+++-+||+||||+|+|||.-+..+...+.+++ ++.|+++|||+++.+. .+|+++++++|+|.++|+.+++.+.
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999999999998874 4789999999999985 5999999999999999999998864
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-45 Score=399.95 Aligned_cols=227 Identities=50% Similarity=0.838 Sum_probs=212.3
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcc
Q 000846 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086 (1255)
Q Consensus 1007 g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1086 (1255)
|.|+++|++++|+. .+++++|+||++++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 46899999999963 2359999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 000846 1087 IALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNP 1166 (1255)
Q Consensus 1087 i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p 1166 (1255)
++|+||++.+|++|++||+.++.+....+++.++++..++.+++..+|.|+++.++....+||||||||++|||||+++|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876655667788888889999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1167 SILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1167 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|++++++++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999998778999999999999988999999999999999999998764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-45 Score=401.54 Aligned_cols=234 Identities=51% Similarity=0.833 Sum_probs=212.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
|+++|++++|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999642 246999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 000846 425 LVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKI 504 (1255)
Q Consensus 425 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~i 504 (1255)
|++|++++|+.|++||+.++......+++.++++..++.+++..+|.|+++..+..+.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999986544455667777777888999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhccCCCChhHHHH
Q 000846 505 LLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMV 581 (1255)
Q Consensus 505 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 581 (1255)
+||||||++||+.+++.+.+.|+++.+|+|+|++||+++.+..||++++|++|++++.|+++++.++ .+.|..++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~--~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE--NGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc--cChHHHHH
Confidence 9999999999999999999999988778999999999999978999999999999999999998874 45565544
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-45 Score=397.98 Aligned_cols=221 Identities=39% Similarity=0.602 Sum_probs=207.0
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcc
Q 000846 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086 (1255)
Q Consensus 1007 g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1086 (1255)
|.|+++|++++|+.. ++++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 468999999999742 3469999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 000846 1087 IALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNP 1166 (1255)
Q Consensus 1087 i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p 1166 (1255)
++|+||+|.+|++|++||+.+... .+.+++.++++..++.+++..+|.|+++.+++.+.+||||||||++|||||+++|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999986543 4677888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCH
Q 000846 1167 SILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSH 1229 (1255)
Q Consensus 1167 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~ 1229 (1255)
++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 999999999999999999999999998778999999999999999999999999999998863
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=375.61 Aligned_cols=223 Identities=35% Similarity=0.584 Sum_probs=189.3
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCC---HHHHh
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH---LKWLR 420 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~r 420 (1255)
.|+++||+.+||+ ++.+|+||||+|++||++||+||||||||||+++|.|+.+|++|+|.++|.++..+. ...+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999984 457999999999999999999999999999999999999999999999999998876 55678
Q ss_pred cccEEeccCCccCcc-cHHHHhccCCCCCCH--HH---HHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHH
Q 000846 421 SQMGLVNQEPVLFAT-SITENILFGKDGASM--DD---VISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAI 494 (1255)
Q Consensus 421 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~--~~---~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~l 494 (1255)
++|||++|.+.|.+. ||.+|++.|+-.... .. .....+...+.+.++++ |+....-.+..+|||||+|||+|
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLerv--gi~~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV--GILDKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHc--CcHHHHHHHhccCCcchhHHHHH
Confidence 899999999999876 999999987642210 00 00011222233444554 55555666778999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 495 ARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 495 ARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
||||+++|+|+|-|||+|+|||.+.+.+++.|++.. .|.|+|+.-|+++.++ .||||+-|++|+|+.+|+++|+-.
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 999999999999999999999999999999999874 4899999999999985 599999999999999999999643
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=361.46 Aligned_cols=207 Identities=31% Similarity=0.514 Sum_probs=186.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCC---HHHHhc
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH---LKWLRS 421 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~r~ 421 (1255)
|+|+||+++|+.. .++|+||||+|++||++-|+||||||||||+|+|.+...|+.|+|.++|+|+..+. ...+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999864 56999999999999999999999999999999999999999999999999998775 456899
Q ss_pred ccEEeccCCccCcc-cHHHHhccCCC------CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHH
Q 000846 422 QMGLVNQEPVLFAT-SITENILFGKD------GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAI 494 (1255)
Q Consensus 422 ~i~~v~Q~~~l~~~-ti~~ni~~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~l 494 (1255)
+||+|+||..|... ||.||++|+.. ..-.+++.++++.+++.+-...+| .+|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 99999999988765 99999998643 112346778888888888888887 4899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 000846 495 ARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGS 564 (1255)
Q Consensus 495 ARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~ 564 (1255)
|||++.+|++||-||||.+|||.....|++.+.++. .|.||++.||+.+.+.. --|++.+++|+++....
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999885 49999999999999976 67899999999987654
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=369.81 Aligned_cols=476 Identities=21% Similarity=0.280 Sum_probs=363.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChHHHHHHHHhhHHHHHHHHHHHHH
Q 000846 728 LSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMS 807 (1255)
Q Consensus 728 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~l~~rl~~D~~~i~~~~~~~l~ 807 (1255)
+...|.++.++..+.+.+........+++...++|.++.++++..|+.-+. +...++++.++++|+..+. +-...++
T Consensus 50 ~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerie--r~~~~rlla~L~~Dvr~IS-f~~s~lp 126 (546)
T COG4615 50 VLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIE--RLGSARLLAGLTSDVRNIS-FAFSRLP 126 (546)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH--Hhcccchhhhhccccccee-ehHhhhH
Confidence 344556666666777778888888999999999999999999999999887 6789999999999999998 5556778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHH
Q 000846 808 LLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQK 887 (1255)
Q Consensus 808 ~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIra~~~~~ 887 (1255)
.+.++.+.++++.+...++|+++.+++.+.+.+.+..-++.....-+.....++...+.....+-.+.|.+..+....-.
T Consensus 127 ~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~ 206 (546)
T COG4615 127 ELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERA 206 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHH
Confidence 88999999999999999999999988887777776666665555555566778888888899999999999988765332
Q ss_pred H--HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000846 888 R--ILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAG 965 (1255)
Q Consensus 888 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 965 (1255)
+ +.+.|........+...+...+.......++.+.+....+.+|..... ++-+.....+..+.+++...++.++.
T Consensus 207 ~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~v 283 (546)
T COG4615 207 EYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAV 283 (546)
T ss_pred HHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHH
Confidence 2 222222222222221111111211222334555555666666665443 33344444456677778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCccccccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcC
Q 000846 966 SMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQ 1045 (1255)
Q Consensus 966 ~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~ 1045 (1255)
...+.+..+..|.+++.++-..++..+-..++. .+.| ..||++||.|+|+. ..--+..||++|++||.|=|+|.
T Consensus 284 gilP~l~~AqvA~~kiakle~~~~~a~~~~~q~-~p~~---~~lelrnvrfay~~--~~FhvgPiNl~ikrGelvFliG~ 357 (546)
T COG4615 284 GILPTLLTAQVAFNKIAKLELAPYKADFPRPQA-FPDW---KTLELRNVRFAYQD--NAFHVGPINLTIKRGELVFLIGG 357 (546)
T ss_pred hhhhHHHHHHHHHHHHHHhhcCCccccCCCCCc-CCcc---cceeeeeeeeccCc--ccceecceeeEEecCcEEEEECC
Confidence 999999999999999999866443332222211 1123 35999999999974 22468999999999999999999
Q ss_pred CCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceEEEccCCCCCcccHHHHHhcCCC-CCCHHHHHHHHHHh
Q 000846 1046 SGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKA-DARESEIKKAAVLA 1124 (1255)
Q Consensus 1046 SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~-~~~~~ei~~al~~a 1124 (1255)
|||||||++++|.|+|.|++|+|++||.+++.-+++++|+-++-|+-|.+||+.++ |.. .++++.+.+-++.-
T Consensus 358 NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrL 431 (546)
T COG4615 358 NGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRL 431 (546)
T ss_pred CCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998754 322 36666665544444
Q ss_pred cHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEE
Q 000846 1125 NAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVV 1202 (1255)
Q Consensus 1125 ~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~I 1202 (1255)
.+..-. ++.+|== ....||-|||.|+|+--|++-+.+|++|||=.+--||.=.+...+.+-... .|||++.|
T Consensus 432 el~~kt-sl~d~~f-----s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aI 505 (546)
T COG4615 432 ELAHKT-SLNDGRF-----SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAI 505 (546)
T ss_pred HHhhhh-cccCCcc-----cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEE
Confidence 333221 1222211 125799999999999999999999999999999999999999998876554 59999999
Q ss_pred ccCchhhhhcCEEEEEeCCEEEEec
Q 000846 1203 AHRLSTIQKSDTIAVIKNGRVVEQG 1227 (1255)
Q Consensus 1203 aHrl~ti~~~D~I~Vl~~G~ive~G 1227 (1255)
||+-.-...|||++.|++|+++|.-
T Consensus 506 sHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 506 SHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred ecCchhhhhHHHHHHHhcCceeecc
Confidence 9999999999999999999999863
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=416.34 Aligned_cols=226 Identities=31% Similarity=0.492 Sum_probs=191.0
Q ss_pred EEEEEEEEECCCCC-CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHH---Hh
Q 000846 1009 IELKNVFFAYPTRP-DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ---LR 1084 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~-~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---lR 1084 (1255)
|+++||+++|++.. +.++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996321 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cceEEEccCCCCCc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHH
Q 000846 1085 SHIALVSQEPTLFA-GTIRENIAYGKA--DARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIA 1157 (1255)
Q Consensus 1085 ~~i~~V~Qdp~LF~-gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrla 1157 (1255)
++|+||||++.+|. .|++||+.++.. ..+. +++.++++.+++.++.. ....+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-----------~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-----------SYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 89999999999995 799999987532 2222 33455555555544432 345689999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000846 1158 LARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1158 lARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
|||||+.+|+|||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+++|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999999754 7899999999999965 99999999999999999999987
Q ss_pred hhcCchh-HHHHh
Q 000846 1235 LSRGGAY-YSLIK 1246 (1255)
Q Consensus 1235 ~~~~g~y-~~l~~ 1246 (1255)
. +...+ ..++.
T Consensus 231 ~-p~~~~~~~~~~ 242 (343)
T TIGR02314 231 H-PKTPLAQKFIR 242 (343)
T ss_pred C-CCcHHHHHHHh
Confidence 4 33333 44443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=410.51 Aligned_cols=215 Identities=32% Similarity=0.537 Sum_probs=190.9
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcc
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ 422 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 422 (1255)
..|+++||+++|+ +..+++|+||+|++||+++|+|||||||||+|++|+||..|++|+|.+||+++.+++++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3699999999997 35799999999999999999999999999999999999999999999999999998876 568
Q ss_pred cEEeccCCccCcc-cHHHHhccCCC-C--CCH----HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHH
Q 000846 423 MGLVNQEPVLFAT-SITENILFGKD-G--ASM----DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAI 494 (1255)
Q Consensus 423 i~~v~Q~~~l~~~-ti~~ni~~~~~-~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~l 494 (1255)
||+|+|+..||+. ||+|||.||.. . ... +++.++++.+++.++-.+. ..+|||||+|||||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----------p~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRK-----------PHQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhC-----------hhhhChHHHHHHHH
Confidence 9999999999986 99999999975 1 122 2566666666666655544 46999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhcc
Q 000846 495 ARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 495 ARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~-~~~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
||||..+|++||||||.||||.+-+..++..++++.+ |.|.|+|||+-++. ..+|||+||++|+|...|+|+|+..+
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 9999999999999999999999999999999988743 89999999999986 66999999999999999999999876
Q ss_pred CC
Q 000846 572 GE 573 (1255)
Q Consensus 572 ~~ 573 (1255)
+.
T Consensus 228 P~ 229 (352)
T COG3842 228 PA 229 (352)
T ss_pred cc
Confidence 43
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-45 Score=388.66 Aligned_cols=214 Identities=33% Similarity=0.523 Sum_probs=192.9
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.++++|++|+|+ ++++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|++||.++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999996 34799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCC-CCcccHHHHHhcCCCC----------CCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHH
Q 000846 1088 ALVSQEPT-LFAGTIRENIAYGKAD----------ARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRI 1156 (1255)
Q Consensus 1088 ~~V~Qdp~-LF~gTIreNl~~g~~~----------~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrl 1156 (1255)
+||||++. -|.-|++|=+.+|+-. .+.+.+.+|++..++.++... .-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHH
Confidence 99999964 5677999999988521 123357888999999888543 2346999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhh-hhcCEEEEEeCCEEEEecCHHHHH
Q 000846 1157 ALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTI-QKSDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1157 alARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti-~~~D~I~Vl~~G~ive~G~~~eLl 1233 (1255)
.|||||.++|+||+||||||+||....-.|++.+++.. +|+|+|+|.|+++.. +.||++++|++|+++..|+|+|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999986 479999999999875 679999999999999999999998
Q ss_pred hh
Q 000846 1234 AL 1235 (1255)
Q Consensus 1234 ~~ 1235 (1255)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-45 Score=380.15 Aligned_cols=195 Identities=32% Similarity=0.486 Sum_probs=168.0
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.+++++|+++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..- ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4889999999974 5699999999999999999999999999999999999999999999999887432 4579
Q ss_pred EEeccCCccCc-ccHHHHhccCCCCCC------HHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHH
Q 000846 424 GLVNQEPVLFA-TSITENILFGKDGAS------MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIAR 496 (1255)
Q Consensus 424 ~~v~Q~~~l~~-~ti~~ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lAR 496 (1255)
+||+|++.||+ -||+||+.++.+... .+.+.+.++.+++.+|- +..+.+|||||||||||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~-----------~~~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFE-----------DKYPHQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchh-----------hcCccccChHHHHHHHHHH
Confidence 99999999998 499999999875321 22344444555554444 4445699999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhh-hhcCEEEEEeCC
Q 000846 497 ALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTI-RTANLIMVLKAG 557 (1255)
Q Consensus 497 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~-~~~d~i~vl~~G 557 (1255)
||+.+|+||+||||++|||+.|+..+++.+.++. .++|+++|||++++. .-+|||+||.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999999999999999999999999998874 379999999999986 559999999984
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=373.46 Aligned_cols=226 Identities=31% Similarity=0.470 Sum_probs=188.4
Q ss_pred cEEEEEEEEECCCCCC-CccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCC-HHHHhc
Q 000846 1008 RIELKNVFFAYPTRPD-QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN-LKQLRS 1085 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~-~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-~~~lR~ 1085 (1255)
-++++|+++.|+.+.. .++|+||||+|.+||++||||+||||||||.++|.|+.+|++|+|.+||.+..... ....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 3889999999974321 15999999999999999999999999999999999999999999999997765433 346788
Q ss_pred ceEEEccCCC--CC-cccHHHHHhcCC----CCCCHHHHHHHHHHhcHHH-HHHccccccccccCCCCCCCChHHHHHHH
Q 000846 1086 HIALVSQEPT--LF-AGTIRENIAYGK----ADARESEIKKAAVLANAHE-FISGMKDGYDTYCGERGVQLSGGQKQRIA 1157 (1255)
Q Consensus 1086 ~i~~V~Qdp~--LF-~gTIreNl~~g~----~~~~~~ei~~al~~a~l~~-~i~~lp~gldt~vge~G~~LSgGQkQrla 1157 (1255)
.+.+|+|||. |= .-||++-|.=+. -+-.+++++++++.+++.+ |... ...+||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R-----------~P~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDR-----------RPHELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhc-----------CchhcChhHHHHHH
Confidence 9999999996 22 247777763111 1223456888888888744 3333 34679999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCC--CeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000846 1158 LARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMG--RTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1158 lARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~--~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
|||||.-+|++||||||||+||.-..+.|++.+.+..++ -|.|+|||++..+.. ||||+||++|+++|.++-.++++
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999999999999999999998764 499999999999976 99999999999999999999987
Q ss_pred hhcCchhHHHH
Q 000846 1235 LSRGGAYYSLI 1245 (1255)
Q Consensus 1235 ~~~~g~y~~l~ 1245 (1255)
. +...|.+..
T Consensus 232 ~-~~h~ytr~L 241 (252)
T COG1124 232 H-PSHPYTREL 241 (252)
T ss_pred C-CccHHHHHH
Confidence 5 566676643
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=408.86 Aligned_cols=220 Identities=29% Similarity=0.524 Sum_probs=187.7
Q ss_pred cEEEEEEEEECCCCC--CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCC-------
Q 000846 1008 RIELKNVFFAYPTRP--DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNY------- 1078 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~--~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i------- 1078 (1255)
.|+++||+|+|+... +.++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999997421 24699999999999999999999999999999999999999999999999998653
Q ss_pred ---------CHHHHhcceEEEccCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHccccccc-cccCCC
Q 000846 1079 ---------NLKQLRSHIALVSQEP--TLFAGTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYD-TYCGER 1144 (1255)
Q Consensus 1079 ---------~~~~lR~~i~~V~Qdp--~LF~gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~i~~lp~gld-t~vge~ 1144 (1255)
+...+|++|+||+|+| .+|+.|++||+.++.. ..+.++..+ .+.+++..+ |++ ...+..
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK-----LAKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCChhHhcCC
Confidence 3567899999999998 6999999999988632 233333322 123444444 554 446777
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh-hhcCEEEEEeCCE
Q 000846 1145 GVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTI-QKSDTIAVIKNGR 1222 (1255)
Q Consensus 1145 G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti-~~~D~I~Vl~~G~ 1222 (1255)
+.+||||||||++|||||+++|+||||||||++||+.+++.+.+.|++.. +++|+|+|||+++.+ ..||+|+||++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 88999999999999999999999999999999999999999999998864 589999999999987 5699999999999
Q ss_pred EEEecCHHHHHh
Q 000846 1223 VVEQGSHNELVA 1234 (1255)
Q Consensus 1223 ive~G~~~eLl~ 1234 (1255)
+++.|+|++++.
T Consensus 254 i~~~g~~~~~~~ 265 (320)
T PRK13631 254 ILKTGTPYEIFT 265 (320)
T ss_pred EEEeCCHHHHhc
Confidence 999999998754
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=369.59 Aligned_cols=225 Identities=32% Similarity=0.544 Sum_probs=192.8
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHH---HHh
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLK---QLR 1084 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR 1084 (1255)
.|++++|+++|. ++.||+||||+|++||.+||+|+||||||||++++.|+..|++|+|.++|.|+.+++-+ .+|
T Consensus 8 ~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 599999999996 34699999999999999999999999999999999999999999999999999998864 569
Q ss_pred cceEEEccCCCCCcc-cHHHHHhcCCC---CCCHHHHHH----HHHHhcHHHHHHcccccccccc-CCCCCCCChHHHHH
Q 000846 1085 SHIALVSQEPTLFAG-TIRENIAYGKA---DARESEIKK----AAVLANAHEFISGMKDGYDTYC-GERGVQLSGGQKQR 1155 (1255)
Q Consensus 1085 ~~i~~V~Qdp~LF~g-TIreNl~~g~~---~~~~~ei~~----al~~a~l~~~i~~lp~gldt~v-ge~G~~LSgGQkQr 1155 (1255)
+++|+++|+-.||+. ||+||+.|... +.+++++.+ .++.+| |...+ .--.+.||||.+.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VG-----------L~~~~~~~~PsELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVG-----------LRGAAADLYPSELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcC-----------CChhhhhhCchhhcchHHHH
Confidence 999999999999975 99999987633 334444433 223333 33331 12357899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1156 IALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1156 lalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
+||||||.-+|+||++|||||+|||.+...+-+.|+++.+ +.|+++|||+++++.. ||||+++.+|+|+..|+++||
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988754 8899999999999876 799999999999999999999
Q ss_pred HhhhcCchhHHHHhh
Q 000846 1233 VALSRGGAYYSLIKP 1247 (1255)
Q Consensus 1233 l~~~~~g~y~~l~~~ 1247 (1255)
.+. .+.+.++.++-
T Consensus 234 ~~s-d~P~v~qf~~G 247 (263)
T COG1127 234 LAS-DDPWVRQFFNG 247 (263)
T ss_pred HhC-CCHHHHHHhcC
Confidence 985 56666666543
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-44 Score=397.26 Aligned_cols=240 Identities=33% Similarity=0.536 Sum_probs=216.0
Q ss_pred CccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHH
Q 000846 340 YVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL 419 (1255)
Q Consensus 340 ~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 419 (1255)
...+.|+++|++++|+.. +..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 346789999999999742 2469999999999999999999999999999999999999999999999999988888888
Q ss_pred hcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhc
Q 000846 420 RSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALI 499 (1255)
Q Consensus 420 r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~ 499 (1255)
++.++||+|+|.+|++|++||+..... ...+++.++.+..++.+.+..+|.|+++.+++.+.+||||||||++||||++
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999975422 2345677777888899999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhccCCCChhHH
Q 000846 500 RDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQ 579 (1255)
Q Consensus 500 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 579 (1255)
++|++|||||||++||+++++.+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+. ..+.|..
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 251 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ-EDGVFAS 251 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cchHHHH
Confidence 999999999999999999999999999988778999999999999988999999999999999999999764 3445655
Q ss_pred HHH
Q 000846 580 MVE 582 (1255)
Q Consensus 580 ~~~ 582 (1255)
++.
T Consensus 252 ~~~ 254 (257)
T cd03288 252 LVR 254 (257)
T ss_pred HHh
Confidence 543
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-44 Score=389.96 Aligned_cols=220 Identities=45% Similarity=0.735 Sum_probs=203.0
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcc
Q 000846 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086 (1255)
Q Consensus 1007 g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1086 (1255)
|.|+++|++++|+.. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999642 2469999999999999999999999999999999999999999999999999988887788899
Q ss_pred eEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 000846 1087 IALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNP 1166 (1255)
Q Consensus 1087 i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p 1166 (1255)
++|+||+|.+|..|++||+.++.+..+.+++.+.++..++.+.+..+|.|++|.+.+...+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999899999998765544566778888899999999999999999999889999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEec
Q 000846 1167 SILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQG 1227 (1255)
Q Consensus 1167 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G 1227 (1255)
++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999987668999999999988889999999999998765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=387.11 Aligned_cols=215 Identities=36% Similarity=0.610 Sum_probs=194.2
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecC-CCCHHHHhcc
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIR-NYNLKQLRSH 1086 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~-~i~~~~lR~~ 1086 (1255)
.|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.+++ ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999854 57999999999999999999999999999999999999999999999999998 4888999999
Q ss_pred eEEEccCC--CCCcccHHHHHhcCCC--CCCHH----HHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHH
Q 000846 1087 IALVSQEP--TLFAGTIRENIAYGKA--DARES----EIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIAL 1158 (1255)
Q Consensus 1087 i~~V~Qdp--~LF~gTIreNl~~g~~--~~~~~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlal 1158 (1255)
+|+|+|+| .+|..||.|.++||.. ..+.+ .+.++++.+++.++.. ....+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~-----------r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLD-----------RPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc-----------CCccccCCcceeeHHh
Confidence 99999999 7999999999999854 33443 4566677777766532 3456899999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1159 ARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1159 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
|.+|..+|+|||||||||+||+...+.+.+.++++.+ ++|+|+|||+++.+.. |||++||++|+++.+|+|++++++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999999864 4799999999999988 999999999999999999999875
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=375.67 Aligned_cols=210 Identities=36% Similarity=0.536 Sum_probs=173.3
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHH----H
Q 000846 345 IEFRDVYFCYPSRP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW----L 419 (1255)
Q Consensus 345 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~----~ 419 (1255)
++++||++.|.... ...+|+++||+|++||+++|+||||||||||+++|.|+..|++|+|.++|.|+..++.+. .
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 246999999999999999999999999999999999999999999999999999887432 3
Q ss_pred hcccEEeccCCccCcc-cHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhc-CCCCCCChHHHHHHHHH
Q 000846 420 RSQMGLVNQEPVLFAT-SITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVG-QLGFQMSGGQKQRIAIA 495 (1255)
Q Consensus 420 r~~i~~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~-~~g~~LSgGqrqri~lA 495 (1255)
|++||||+|+..|++. |++|||.++.. .....+.. ..+.+.++.+ |+..... ..+.+||||||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~-----~~~~~l~~~l--gl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRK-----RAAEELLEVL--GLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHH-----HHHHHHHHhc--CChhhhccCCchhcCHHHHHHHHHH
Confidence 5679999999999876 99999986421 11111111 1112223333 4543333 55679999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEEEE
Q 000846 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIRTANLIMVLKAGKVVE 561 (1255)
Q Consensus 496 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 561 (1255)
|||+.+|+|++.||||++||.++.+.|.+.++++. .|+|+|+|||+......|||++.|++|++..
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999884 3899999999999999999999999999543
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=397.51 Aligned_cols=194 Identities=27% Similarity=0.372 Sum_probs=161.0
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcc
Q 000846 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086 (1255)
Q Consensus 1007 g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1086 (1255)
..+++.+|+|.|+..+ .+.+.+++++++.-+++++||++|+||||+++++.+-..|..|.+-+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 3699999999996432 2789999999999999999999999999999999999999999998876 789
Q ss_pred eEEEccCCCCC-cccHH--HHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCC-CCCChHHHHHHHHHHHH
Q 000846 1087 IALVSQEPTLF-AGTIR--ENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERG-VQLSGGQKQRIALARAI 1162 (1255)
Q Consensus 1087 i~~V~Qdp~LF-~gTIr--eNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G-~~LSgGQkQrlalARAL 1162 (1255)
|+|-.|.-+=| +-.+- +-+.--.|..+++|+.+.|...|+ +.++.-.. ..||||||=|+++|-..
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl-----------~g~la~~si~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGL-----------SGELALQSIASLSGGQKSRVAFAACT 497 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCC-----------CchhhhccccccCCcchhHHHHHHHh
Confidence 99999987633 22221 111112345589999888776654 44333333 56999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 000846 1163 LKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVE 1225 (1255)
Q Consensus 1163 lr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive 1225 (1255)
..+|.+|+|||||..||.++-..+-++|+.. +.-||+|||+.+.+.. |+.++|.++|+|..
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999876 3479999999999976 99999999999976
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-44 Score=370.04 Aligned_cols=217 Identities=32% Similarity=0.497 Sum_probs=182.5
Q ss_pred eEEEEeEEEEcCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCC-CHHHHhc
Q 000846 344 EIEFRDVYFCYPSRP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL-HLKWLRS 421 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~-~~~~~r~ 421 (1255)
.++++|+++.|+.+. ..++|+||||+|++||+++|||+||||||||.++|+|+.+|++|+|+++|.++... ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999997532 12599999999999999999999999999999999999999999999999877654 3457788
Q ss_pred ccEEeccCCc--cCcc-cHHHHhccCCC----CCCHHHHHHHHHHhchH-HHHhcCCCcccchhcCCCCCCChHHHHHHH
Q 000846 422 QMGLVNQEPV--LFAT-SITENILFGKD----GASMDDVISAAKAANAH-DFITKLPDGYETQVGQLGFQMSGGQKQRIA 493 (1255)
Q Consensus 422 ~i~~v~Q~~~--l~~~-ti~~ni~~~~~----~~~~~~~~~~~~~~~~~-~~i~~l~~g~~t~~~~~g~~LSgGqrqri~ 493 (1255)
.|-+|+|||. |-+- ||++-|.-+.. +...+++.++++.+++. +++.+ ...+||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R-----------~P~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDR-----------RPHELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhc-----------CchhcChhHHHHHH
Confidence 9999999995 4333 88877753322 12234466666666653 23444 44689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhc
Q 000846 494 IARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 494 lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
|||||.-+|++||||||||+||+..+..|++.+.++++ +-|.|+|||++..+.+ ||||+||++|+++|.++..++.+
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999999999999999999998876 5699999999999976 99999999999999999999987
Q ss_pred c
Q 000846 571 R 571 (1255)
Q Consensus 571 ~ 571 (1255)
.
T Consensus 232 ~ 232 (252)
T COG1124 232 H 232 (252)
T ss_pred C
Confidence 6
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=399.66 Aligned_cols=217 Identities=34% Similarity=0.567 Sum_probs=194.4
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++||+++|... .+|+|+||+|+.||.++|+|||||||||++++|.||.+|++|+|+|||.|+.++++++ +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999632 2999999999999999999999999999999999999999999999999999999876 899
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHH
Q 000846 1088 ALVSQEPTLFAG-TIRENIAYGKAD------ARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALAR 1160 (1255)
Q Consensus 1088 ~~V~Qdp~LF~g-TIreNl~~g~~~------~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalAR 1160 (1255)
++|+|++.||.. ||+|||.|+... --++++.++++..++.++++..| .+||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 999999999975 999999998542 22567788888888888776655 579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHHhhhc
Q 000846 1161 AILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVALSR 1237 (1255)
Q Consensus 1161 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl~~~~ 1237 (1255)
||+++|++++||||.|+||......+...|+++.+ +.|+|.|||+-..+. -+|||+||.+|+|.+.|+|.|+..+ +
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~-P 225 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER-P 225 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC-c
Confidence 99999999999999999999999999999988654 689999999988765 5999999999999999999999976 5
Q ss_pred Cchh
Q 000846 1238 GGAY 1241 (1255)
Q Consensus 1238 ~g~y 1241 (1255)
.+.|
T Consensus 226 ~n~f 229 (338)
T COG3839 226 ANLF 229 (338)
T ss_pred cchh
Confidence 5544
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=356.01 Aligned_cols=208 Identities=30% Similarity=0.481 Sum_probs=186.3
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHH---HHhc
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLK---QLRS 1085 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR~ 1085 (1255)
|+|+||+.+|+.. +++|+||||+|++||.+=++|||||||||++++|++...|++|+|.++|.|++.+.-. -||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999854 5799999999999999999999999999999999999999999999999999887754 5899
Q ss_pred ceEEEccCCCCCc-ccHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHH
Q 000846 1086 HIALVSQEPTLFA-GTIRENIAYGKA--DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIAL 1158 (1255)
Q Consensus 1086 ~i~~V~Qdp~LF~-gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlal 1158 (1255)
+||+|+||..|.. -|+.||++|+.. ..+ .+++.++++.+|+.+-...+| .+|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 9999999998765 599999987642 122 356778889999888887777 4799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhc-CEEEEEeCCEEEEecCH
Q 000846 1159 ARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQKS-DTIAVIKNGRVVEQGSH 1229 (1255)
Q Consensus 1159 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~-D~I~Vl~~G~ive~G~~ 1229 (1255)
|||++.+|++||-||||-+|||++...|++.+.+.- .|.||++.||+.+.+..+ -|++.+++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999999998874 699999999999999875 67999999999987654
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=390.47 Aligned_cols=226 Identities=52% Similarity=0.883 Sum_probs=209.0
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcc
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ 422 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 422 (1255)
++|+++|++++|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 368999999999632 359999999999999999999999999999999999999999999999999988777788899
Q ss_pred cEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 000846 423 MGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDP 502 (1255)
Q Consensus 423 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~ 502 (1255)
++|++|++.+|.+|++||+.++.+....+++.++++..++.++++.+|.|+++.++....+||||||||++|||||+.+|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876555566777778888899999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhc
Q 000846 503 KILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 503 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++.+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999998877899999999999988899999999999999999888765
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=367.11 Aligned_cols=223 Identities=32% Similarity=0.501 Sum_probs=194.4
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCC---HHHHh
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN---LKQLR 1084 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---~~~lR 1084 (1255)
.|+++||+.+||+ ++.+|+||||+|++||.|||+|+||||||||+++|.|+.+|++|+|.++|.++..+. +..+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 467999999999999999999999999999999999999999999999999999888 66788
Q ss_pred cceEEEccCCCCCc-ccHHHHHhcCCCC-----------CCH---HHHHHHHHHhcHHHHHHccccccccccCCCCCCCC
Q 000846 1085 SHIALVSQEPTLFA-GTIRENIAYGKAD-----------ARE---SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLS 1149 (1255)
Q Consensus 1085 ~~i~~V~Qdp~LF~-gTIreNl~~g~~~-----------~~~---~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 1149 (1255)
++||+|+|.+.|-. -|+.+|+..|.-. .+. ....+|++.+++.+... .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 99999999999876 5999999877532 222 34566777777776642 3457899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEe
Q 000846 1150 GGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQ 1226 (1255)
Q Consensus 1150 gGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~ 1226 (1255)
|||+||++|||||..+|+|+|-|||+|+|||.+.+.|++.|++.. .|.|+|+.-|.++..++ ||||+=|++|+|+-+
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999999875 58999999999999876 999999999999999
Q ss_pred cCHHHHHhhhcCchhHHHHhh
Q 000846 1227 GSHNELVALSRGGAYYSLIKP 1247 (1255)
Q Consensus 1227 G~~~eLl~~~~~g~y~~l~~~ 1247 (1255)
|+++||- +..+.+.|..
T Consensus 230 g~~~el~----~~~~~~iYg~ 246 (258)
T COG3638 230 GPASELT----DEALDEIYGN 246 (258)
T ss_pred CChhhhh----HHHHHHHhcc
Confidence 9999973 3345555543
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-44 Score=408.57 Aligned_cols=230 Identities=29% Similarity=0.513 Sum_probs=190.1
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHH---Hh
Q 000846 345 IEFRDVYFCYPSRP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW---LR 420 (1255)
Q Consensus 345 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~r 420 (1255)
|+++||+++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++..++... .|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 246999999999999999999999999999999999999999999999999998876543 57
Q ss_pred cccEEeccCCccCc-ccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHH
Q 000846 421 SQMGLVNQEPVLFA-TSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARA 497 (1255)
Q Consensus 421 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARa 497 (1255)
++||||+|++.+|. .|++||+.++.. ....++..+ .+.+.++.+ |+.......+.+|||||||||+||||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~v~e~l~~v--gL~~~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR-----KVTELLALV--GLGDKHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 89999999999996 599999987642 122222111 112333333 44444556667999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhccCCC
Q 000846 498 LIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNRGEG 574 (1255)
Q Consensus 498 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~ 574 (1255)
|+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|++++++..+..
T Consensus 155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~ 234 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKT 234 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCc
Confidence 9999999999999999999999999999998853 8999999999999865 999999999999999999999875433
Q ss_pred ChhHHHH
Q 000846 575 GEYYQMV 581 (1255)
Q Consensus 575 ~~~~~~~ 581 (1255)
.....+.
T Consensus 235 ~~~~~~~ 241 (343)
T TIGR02314 235 PLAQKFI 241 (343)
T ss_pred HHHHHHH
Confidence 3334443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=391.55 Aligned_cols=226 Identities=67% Similarity=1.061 Sum_probs=206.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
|+++|+++.|++..+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....+++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999997533356999999999999999999999999999999999999999999999999988777777788899
Q ss_pred EeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 000846 425 LVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKI 504 (1255)
Q Consensus 425 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~i 504 (1255)
|++|++.+|+.|++||+.++......+++.+.++..++.+++..+|.|+++..+....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999989999999987654455566666777788889999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhc
Q 000846 505 LLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 505 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
+||||||++||+.+++.+.+.|+++.+|+|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 999999999999999999999988777899999999999988899999999999999999988875
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=390.40 Aligned_cols=226 Identities=54% Similarity=0.905 Sum_probs=207.6
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
|+++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999743 236999999999999999999999999999999999999999999999999998777777888999
Q ss_pred EeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 000846 425 LVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKI 504 (1255)
Q Consensus 425 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~i 504 (1255)
|++|++.+|+.|++||+.++......+++.+.++..++.+++..+|.|+++..+..+.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987654455666677777888999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhcc
Q 000846 505 LLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 505 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
+||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 9999999999999999999999998778999999999999978999999999999999999998763
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=389.66 Aligned_cols=473 Identities=17% Similarity=0.145 Sum_probs=352.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCC---CChHHHHHHHHhhHHHHHHHHHHH
Q 000846 729 SLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQED---NTSAAICARLATEANVVRSLVGDR 805 (1255)
Q Consensus 729 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~---~~~G~l~~rl~~D~~~i~~~~~~~ 805 (1255)
...|.+++.+..+....+.|+-.....++..-+-+.+.++-+...-.|+.... +.+-..=+|+..|+...-+.....
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l 168 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDL 168 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHH
Confidence 34556666666777777888888888888888888888888877744443111 111123478889988887766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 806 MSLLVQAIFGSVFSYIVGLVLSW---------------RLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLA 870 (1255)
Q Consensus 806 l~~~~~~~~~~i~~~~~~~~~~~---------------~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (1255)
...++.++++++...+++.-.+- .+.+++++.+++.-...+...+.+.+...+..+..+......
T Consensus 169 ~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~L 248 (604)
T COG4178 169 SFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSL 248 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 66677776666665555553222 222222222332222222333334444444444555555556
Q ss_pred HHHHcchHHHHHhccHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 000846 871 SEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQA 950 (1255)
Q Consensus 871 ~e~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~ 950 (1255)
.-.-++.+.|-.|+.|+...++..+..+...+...+..........+......++.++-+..++-....|.+++|+++++
T Consensus 249 vrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa 328 (604)
T COG4178 249 VRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQA 328 (604)
T ss_pred HHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHH
Confidence 66677888999999999888887777766666555544444444555555555555556666777788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC--CCCCCCCCC--ccccc--cccccEEEEEEEEECCCCCCC
Q 000846 951 FLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRS--EIDPDSPQG--RDIKR--QMRGRIELKNVFFAYPTRPDQ 1024 (1255)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~--~~~~~~~~~--~~~~~--~~~g~I~~~~Vsf~Y~~~~~~ 1024 (1255)
..++..+...++.+....+.+....+...|+.++.+.-. +.+...+.. ..... ..+..|+|+|++..-|.. .
T Consensus 329 ~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~ 406 (604)
T COG4178 329 VGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--Q 406 (604)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--C
Confidence 999999999999999999999999999999998875322 111111111 00000 014679999999999853 4
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceEEEccCCCCCcccHHHH
Q 000846 1025 MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIREN 1104 (1255)
Q Consensus 1025 ~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreN 1104 (1255)
+.|+++||.|+|||.+-|.|+||||||||+++|.|+++--+|+|.+-. -..+-|+||.|++-.||+||-
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~ 475 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREA 475 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHHH
Confidence 689999999999999999999999999999999999999999987751 135789999999999999999
Q ss_pred HhcCCCC--CCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHH
Q 000846 1105 IAYGKAD--ARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVS 1182 (1255)
Q Consensus 1105 l~~g~~~--~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~t 1182 (1255)
|+|+++. .+|+++.+++.++++.+++.++.+ . ..-...||+|||||||+||.|+++|++++|||||||||+++
T Consensus 476 l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~----~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~ 550 (604)
T COG4178 476 LCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-E----DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEET 550 (604)
T ss_pred HhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-c----CcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHH
Confidence 9999763 899999999999999999998753 2 22456899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEe
Q 000846 1183 ESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIK 1219 (1255)
Q Consensus 1183 e~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~ 1219 (1255)
|..+.+.+++...+.|+|.|+||.....-.++.+-++
T Consensus 551 e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 551 EDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999999999999999888888777664
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-44 Score=382.86 Aligned_cols=215 Identities=37% Similarity=0.631 Sum_probs=191.1
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecC-CCCHHHHhcc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIR-RLHLKWLRSQ 422 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~-~~~~~~~r~~ 422 (1255)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48899999999864 57999999999999999999999999999999999999999999999999998 4788899999
Q ss_pred cEEeccCC--ccCcccHHHHhccCCCC--CCHHH----HHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHH
Q 000846 423 MGLVNQEP--VLFATSITENILFGKDG--ASMDD----VISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAI 494 (1255)
Q Consensus 423 i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~l 494 (1255)
+|||+|+| .+|..||.|.++||..+ .+.++ +.++++.+++.++. .....+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~-----------~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELL-----------DRPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhc-----------cCCccccCCcceeeHHh
Confidence 99999999 78999999999999653 23333 44555555555543 44457999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhcc
Q 000846 495 ARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 495 ARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
|.+|..+|++||||||||+||+...+.+.+.++++.+ |+|+|++||+++.+.. ||++++|++|+++.+|+|.++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999999854 5899999999999865 999999999999999999998764
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=390.00 Aligned_cols=224 Identities=54% Similarity=0.864 Sum_probs=207.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
|+++|++++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999632 35999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 000846 425 LVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKI 504 (1255)
Q Consensus 425 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~i 504 (1255)
|++|++.+|+.|++||+.++....+.+++.+.++..++.+.+..+|.|+++.+..++.+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655556667777788888899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhc
Q 000846 505 LLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 505 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
+||||||++||+++.+.+.+.|.++.+|+|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999998866899999999999998899999999999999999988876
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-44 Score=347.58 Aligned_cols=209 Identities=32% Similarity=0.537 Sum_probs=188.4
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|.+++|.|+|.+.+ =..+++|++||+|||+||||||||||++++.||..|.+|+|+|||+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56889999996432 358899999999999999999999999999999999999999999999877663 46799
Q ss_pred EEccCCCCCcc-cHHHHHhcCC-C-----CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHH
Q 000846 1089 LVSQEPTLFAG-TIRENIAYGK-A-----DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161 (1255)
Q Consensus 1089 ~V~Qdp~LF~g-TIreNl~~g~-~-----~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARA 1161 (1255)
+++||..||.- ||++|+.+|. | ....+.+..++..+|+.+|...||. +||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 99999999985 9999999985 3 1234678899999999999999883 699999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1162 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
|+|+.|||+||||.|+|||.-...+...+.+.. ++.|+++|||.++.++. +|+++++++|||.+.|.-+++++.
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999999999998876 47899999999998855 999999999999999999999875
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=377.38 Aligned_cols=218 Identities=28% Similarity=0.476 Sum_probs=190.1
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++|++|+|.++ +||+||||+|++|+.+||+||||||||||+++++|+.+|++|+|.++|.++++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 49999999999632 59999999999999999999999999999999999999999999999998876432 5789
Q ss_pred EEEccCC---CCCcccHHHHHhcCCCC----------CCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHH
Q 000846 1088 ALVSQEP---TLFAGTIRENIAYGKAD----------ARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQ 1154 (1255)
Q Consensus 1088 ~~V~Qdp---~LF~gTIreNl~~g~~~----------~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQ 1154 (1255)
|||||.. .=|.-||+|=+.+|... .+.+++.+|++.+++.++.. -++| .|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-------r~i~----~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-------RQIG----ELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-------Cccc----ccCcHHHH
Confidence 9999965 35788999999887431 12478999999999998853 3455 49999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1155 RIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM-GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1155 rlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
|+.|||||+.+|++|+|||||+++|+.++..|.+.|+++.+ ||||++|+|+++.+.. +|+|+.| |+++...|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhc
Confidence 99999999999999999999999999999999999999874 8999999999999865 9999988 6789999999999
Q ss_pred HhhhcCchhHHHHh
Q 000846 1233 VALSRGGAYYSLIK 1246 (1255)
Q Consensus 1233 l~~~~~g~y~~l~~ 1246 (1255)
+.. ..+.+.+.
T Consensus 226 ~~~---~~l~~~~g 236 (254)
T COG1121 226 LTE---ENLEKAFG 236 (254)
T ss_pred cCH---HHHHHHhC
Confidence 763 34554444
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=370.97 Aligned_cols=207 Identities=35% Similarity=0.506 Sum_probs=172.4
Q ss_pred EEEEEEEEECCCCC-CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHH---H-
Q 000846 1009 IELKNVFFAYPTRP-DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ---L- 1083 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~-~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---l- 1083 (1255)
++++||+..|.... ..++|+++||+|++||.|||+||||||||||+++|.++-.|++|+|.++|.|+..++-+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996432 246999999999999999999999999999999999999999999999999999998533 3
Q ss_pred hcceEEEccCCCCCc-ccHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHH
Q 000846 1084 RSHIALVSQEPTLFA-GTIRENIAYGKA--DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRI 1156 (1255)
Q Consensus 1084 R~~i~~V~Qdp~LF~-gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrl 1156 (1255)
|++||+|+|+..|++ -|++||+.++.. ... .+...+.++..++.+... .....+||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 567999999999886 599999975311 111 223333333334433221 134678999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEE
Q 000846 1157 ALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVE 1225 (1255)
Q Consensus 1157 alARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive 1225 (1255)
||||||+.+|+|++.||||.+||++|.+.|.+.+++.. .|+|+|+|||+......|||++.|.+|++.+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999999984 3789999999999999999999999999543
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=384.69 Aligned_cols=220 Identities=38% Similarity=0.602 Sum_probs=204.2
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcc
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ 422 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 422 (1255)
|.|+++|++++|+.. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 468999999999743 2469999999999999999999999999999999999999999999999999988888888999
Q ss_pred cEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 000846 423 MGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDP 502 (1255)
Q Consensus 423 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~ 502 (1255)
++|++|+|.+++.|++||+.+.. ....+++.++++..++.+++..+|.|+++..++.+.+||||||||++|||||+.+|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG-EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998654 34567788888889999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 000846 503 KILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGS 564 (1255)
Q Consensus 503 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~ 564 (1255)
+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999998877899999999999998899999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=388.62 Aligned_cols=219 Identities=51% Similarity=0.835 Sum_probs=199.8
Q ss_pred ccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHh
Q 000846 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLR 1084 (1255)
Q Consensus 1005 ~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR 1084 (1255)
..+.|+++|++++|+++.+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45679999999999753234699999999999999999999999999999999999999999999999999888878888
Q ss_pred cceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 000846 1085 SHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILK 1164 (1255)
Q Consensus 1085 ~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr 1164 (1255)
++++|+||+|.+|++|++||+.++......+++.+..+..++++++..+|.|+++.+.+...+||||||||++|||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999987654444555666666778889999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEE
Q 000846 1165 NPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRV 1223 (1255)
Q Consensus 1165 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~i 1223 (1255)
+|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998778999999999999988999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=391.13 Aligned_cols=213 Identities=32% Similarity=0.537 Sum_probs=182.4
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCH---HHHhc
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNL---KQLRS 1085 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR~ 1085 (1255)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999963 469999999999999999999999999999999999999999999999999987764 56789
Q ss_pred ceEEEccCCCCCcc-cHHHHHhcCCC---CCCHHH----HHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHH
Q 000846 1086 HIALVSQEPTLFAG-TIRENIAYGKA---DARESE----IKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIA 1157 (1255)
Q Consensus 1086 ~i~~V~Qdp~LF~g-TIreNl~~g~~---~~~~~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrla 1157 (1255)
+|+||||++.+|.. |++||+.++.. ..+.++ +.++++..++ +........+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGL-----------RGAEDLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHHHH
Confidence 99999999999986 99999987521 123222 3333333333 22233445679999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000846 1158 LARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1158 lARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999998753 7899999999999875 99999999999999999999975
Q ss_pred h
Q 000846 1235 L 1235 (1255)
Q Consensus 1235 ~ 1235 (1255)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 3
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=389.55 Aligned_cols=212 Identities=37% Similarity=0.622 Sum_probs=181.7
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccc-----CCCCceEEECCeecCCCC--HH
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFY-----DPLKGSVFMDEQDIRNYN--LK 1081 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~-----~p~~G~I~idG~di~~i~--~~ 1081 (1255)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.+||.++...+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999963 36999999999999999999999999999999999999 999999999999998776 56
Q ss_pred HHhcceEEEccCCCCCcccHHHHHhcCCCC--C-C----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHH
Q 000846 1082 QLRSHIALVSQEPTLFAGTIRENIAYGKAD--A-R----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQ 1154 (1255)
Q Consensus 1082 ~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~--~-~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQ 1154 (1255)
.+|++++|+||++.+|..|++||+.++... . . ++++.++++..++.+.....++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 788999999999999988999999865321 1 1 2344455555555443322110 4789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1155 RIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1155 rlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
|++|||||+++|++|||||||++||+++.+.+.+.|++..+.+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999999999998656899999999999865 999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-44 Score=376.08 Aligned_cols=214 Identities=29% Similarity=0.474 Sum_probs=182.0
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCe---ecCCCCHHHHh
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGY---KIRRLHLKWLR 420 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~---~~~~~~~~~~r 420 (1255)
.|+++|+++.|+. .++++|||++|+.||.+|+.||||||||||+++|+|+..|++|+|.+||. |.++.. .-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 4788999999974 45899999999999999999999999999999999999999999999999 555433 334
Q ss_pred cccEEeccCCccCcc-cHHHHhccCCCC--------CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHH
Q 000846 421 SQMGLVNQEPVLFAT-SITENILFGKDG--------ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQR 491 (1255)
Q Consensus 421 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqr 491 (1255)
++||+|+|+..||.. ||++||+||.+- ....++.+.++.+++..+- ...+.+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la-----------~ryP~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLA-----------DRYPAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchh-----------hcCchhcChHHHHH
Confidence 689999999999975 999999999731 1122344444444444433 34457999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHH
Q 000846 492 IAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 492 i~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~-~~~d~i~vl~~G~i~~~g~~~~l 568 (1255)
|||||||..+|++|+||||+++||++.++.+.+.|+++.+ |.|+++|||+.+++ +.||||++|++|+|...|+++|+
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999988753 89999999999987 56999999999999999999999
Q ss_pred hccCC
Q 000846 569 MNRGE 573 (1255)
Q Consensus 569 ~~~~~ 573 (1255)
...+.
T Consensus 226 ~~~P~ 230 (345)
T COG1118 226 YDHPA 230 (345)
T ss_pred hcCCC
Confidence 87643
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=378.32 Aligned_cols=207 Identities=38% Similarity=0.594 Sum_probs=184.8
Q ss_pred ccccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHH
Q 000846 1003 RQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ 1082 (1255)
Q Consensus 1003 ~~~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~ 1082 (1255)
||..+.|+++|++++|+.. +.++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...
T Consensus 1 ~~~~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLED 79 (207)
T ss_pred CCCCCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHH
Confidence 3455779999999999742 246999999999999999999999999999999999999999999999999999888888
Q ss_pred HhcceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHH
Q 000846 1083 LRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAI 1162 (1255)
Q Consensus 1083 lR~~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARAL 1162 (1255)
+|++|+||||+|.+|++|++||+.+... .+++++.++++ ++.....|||||+||++||||+
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral 140 (207)
T cd03369 80 LRSSLTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARAL 140 (207)
T ss_pred HHhhEEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHH
Confidence 8999999999999999999999976542 34444444332 2456788999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCH
Q 000846 1163 LKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSH 1229 (1255)
Q Consensus 1163 lr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~ 1229 (1255)
+++|+||||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 141 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 141 LKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999999998778999999999999988999999999999998874
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=369.39 Aligned_cols=197 Identities=32% Similarity=0.520 Sum_probs=173.6
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.+++++|+.+|++ ..||+||||+|++||.|+|+||||||||||++++.|+.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4899999999974 5699999999999999999999999999999999999999999999999988543 5689
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHH
Q 000846 1088 ALVSQEPTLFA-GTIRENIAYGKADA------RESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALAR 1160 (1255)
Q Consensus 1088 ~~V~Qdp~LF~-gTIreNl~~g~~~~------~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalAR 1160 (1255)
+||+|++.||. -|++||+.++.... ..+...+.++.+|+.+|-...| .+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 99999999998 69999999885421 2345667777777777765544 689999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhh-hhcCEEEEEeC--CEE
Q 000846 1161 AILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTI-QKSDTIAVIKN--GRV 1223 (1255)
Q Consensus 1161 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti-~~~D~I~Vl~~--G~i 1223 (1255)
||+.+|+||+||||.+|||+.|...+|+.+.+.. .++||++|||++++. .-+|||+||.+ |+|
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999999999999999999999999999998875 469999999999886 45999999999 555
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=395.92 Aligned_cols=217 Identities=29% Similarity=0.516 Sum_probs=189.4
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++||+++|++....++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999742224599999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCC--CCCcccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHH
Q 000846 1088 ALVSQEP--TLFAGTIRENIAYGKA--DARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALA 1159 (1255)
Q Consensus 1088 ~~V~Qdp--~LF~gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalA 1159 (1255)
+||+|+| .++..|++|||.++.. ..+. +.+.++++..++.++.. ....+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-----------REPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 9999998 3667899999987632 1222 34556666666655543 33468999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1160 RAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1160 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
|||+++|+||||||||++||+.+.+.+.+.|++..+ |+|+|+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 8999999999999988999999999999999999998764
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=373.65 Aligned_cols=209 Identities=28% Similarity=0.514 Sum_probs=181.9
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++|+|.++ ++|+||||++++|++++|+||||||||||+|+|+|+.+|.+|+|.+.|.+...... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 59999999999743 49999999999999999999999999999999999999999999999988765432 4689
Q ss_pred EEeccCC---ccCcccHHHHhccCCCCC----------CHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHH
Q 000846 424 GLVNQEP---VLFATSITENILFGKDGA----------SMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQ 490 (1255)
Q Consensus 424 ~~v~Q~~---~l~~~ti~~ni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrq 490 (1255)
|||||.. |-|+-||+|=+.+|.... ..+++.++++.+++.++.+ ..-..|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-----------r~i~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-----------RQIGELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-----------CcccccCcHHHH
Confidence 9999964 568899999999874321 1366778888887776543 334589999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 000846 491 RIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK-GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 491 ri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l 568 (1255)
||.|||||+++|++|+|||||+++|+.++..+.+.|+++++ |+||++||||++.+. .+|+|+.|. ++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999999865 999999999999985 599999985 568899999998
Q ss_pred hc
Q 000846 569 MN 570 (1255)
Q Consensus 569 ~~ 570 (1255)
.+
T Consensus 226 ~~ 227 (254)
T COG1121 226 LT 227 (254)
T ss_pred cC
Confidence 76
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=380.50 Aligned_cols=220 Identities=42% Similarity=0.709 Sum_probs=200.3
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcc
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ 422 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 422 (1255)
++|+++|+++.|++. ..++|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|.++...+...+++.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999642 2469999999999999999999999999999999999999999999999999887777777889
Q ss_pred cEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 000846 423 MGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDP 502 (1255)
Q Consensus 423 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~ 502 (1255)
++|++|++.+|..|++||+.++......+++.+.++..++.+.+..+|.|++|.+.....+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999889999998865444555677778888898999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 000846 503 KILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESG 563 (1255)
Q Consensus 503 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g 563 (1255)
++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999886668999999999988789999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=388.06 Aligned_cols=218 Identities=31% Similarity=0.518 Sum_probs=189.7
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCeecCCCCHHHHh
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD---PLKGSVFMDEQDIRNYNLKQLR 1084 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~~~~lR 1084 (1255)
.|+++||+++|++ +++|+|+||++++||.+||+|+||||||||+++|+|+++ |++|+|.+||.++...+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999963 369999999999999999999999999999999999985 6899999999999988888889
Q ss_pred cceEEEccCCCCCcccHHHHHhcCCC--------CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHH
Q 000846 1085 SHIALVSQEPTLFAGTIRENIAYGKA--------DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRI 1156 (1255)
Q Consensus 1085 ~~i~~V~Qdp~LF~gTIreNl~~g~~--------~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrl 1156 (1255)
++|+|+||+|.+|..|++||+.++.. ...++++.++++..++.+++. ....+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------DKLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-------HHhcCCcccCCHHHHHHH
Confidence 99999999999999999999977521 111224455555555544432 223456788999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1157 ALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1157 alARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
+|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|++++++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999999877899999999999886 5999999999999999999999864
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=395.68 Aligned_cols=222 Identities=27% Similarity=0.489 Sum_probs=189.9
Q ss_pred ceEEEEeEEEEcCCCC--CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCC------
Q 000846 343 GEIEFRDVYFCYPSRP--DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL------ 414 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~------ 414 (1255)
..|+++|++|+|+... ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3599999999997421 24699999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhcccEEeccCC--ccCcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCccc-chhcC
Q 000846 415 ----------HLKWLRSQMGLVNQEP--VLFATSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYE-TQVGQ 479 (1255)
Q Consensus 415 ----------~~~~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~ 479 (1255)
....+|++|+||+|+| .+|+.||+|||.++.. ..+.++.. + .+.+++..+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~---~--~~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK---K--LAKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHH---H--HHHHHHHHc--CCChhHhcC
Confidence 3457889999999998 6899999999998742 12222221 1 223455555 665 56788
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhh-hhcCEEEEEeCC
Q 000846 480 LGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTI-RTANLIMVLKAG 557 (1255)
Q Consensus 480 ~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~-~~~d~i~vl~~G 557 (1255)
.+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.|+++. +|+|+|+|||+++.+ ..||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999998874 589999999999987 569999999999
Q ss_pred EEEEecChhHHhcc
Q 000846 558 KVVESGSHNELMNR 571 (1255)
Q Consensus 558 ~i~~~g~~~~l~~~ 571 (1255)
++++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998753
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=394.44 Aligned_cols=218 Identities=34% Similarity=0.568 Sum_probs=194.7
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++||+.+|. +..+++|+||+|++||.++++|||||||||++++|.||..|++|+|.+||.|+..++++ ++.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 599999999996 45799999999999999999999999999999999999999999999999999998875 5899
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCC---CCCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHH
Q 000846 1088 ALVSQEPTLFA-GTIRENIAYGKA---DARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALA 1159 (1255)
Q Consensus 1088 ~~V~Qdp~LF~-gTIreNl~~g~~---~~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalA 1159 (1255)
++|+|+..||. .||+||+.||.. ...+ +.+.++++.+++.++-... ..+|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----------p~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRK-----------PHQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhC-----------hhhhChHHHHHHHHH
Confidence 99999999997 599999999954 1222 3678888888888775544 467999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhh-hhcCEEEEEeCCEEEEecCHHHHHhhh
Q 000846 1160 RAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTI-QKSDTIAVIKNGRVVEQGSHNELVALS 1236 (1255)
Q Consensus 1160 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti-~~~D~I~Vl~~G~ive~G~~~eLl~~~ 1236 (1255)
|||..+|++||||||-|+||.+-...++..+++.. .|.|.|+|||+-++. .-+|||+||.+|+|...|+|+|+...
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~- 227 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER- 227 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC-
Confidence 99999999999999999999999999999998875 388999999998875 56999999999999999999999986
Q ss_pred cCchhH
Q 000846 1237 RGGAYY 1242 (1255)
Q Consensus 1237 ~~g~y~ 1242 (1255)
+...|-
T Consensus 228 P~~~fV 233 (352)
T COG3842 228 PATRFV 233 (352)
T ss_pred cchHHH
Confidence 665554
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=401.53 Aligned_cols=220 Identities=37% Similarity=0.561 Sum_probs=184.5
Q ss_pred EEEEEEEEECCCCC-CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHH---Hh
Q 000846 1009 IELKNVFFAYPTRP-DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ---LR 1084 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~-~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---lR 1084 (1255)
|+++||+++|+... +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997211 346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cceEEEccCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHH
Q 000846 1085 SHIALVSQEPTLFA-GTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161 (1255)
Q Consensus 1085 ~~i~~V~Qdp~LF~-gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARA 1161 (1255)
++|+||||++.+|. .|++||+.++.. ..+.++..+ .+.++++.+ |++........+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 89999999999886 699999987531 122222211 112233322 33333344557899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1162 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
|+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998753 7899999999999876 999999999999999999999864
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-43 Score=401.31 Aligned_cols=217 Identities=32% Similarity=0.540 Sum_probs=188.2
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.+. .+++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999963 468999999999999999999999999999999999999999999999999987765 36789
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHH
Q 000846 1088 ALVSQEPTLFAG-TIRENIAYGKA--DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALAR 1160 (1255)
Q Consensus 1088 ~~V~Qdp~LF~g-TIreNl~~g~~--~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalAR 1160 (1255)
+||+|++.+|.. |++||+.|+.. ..+ ++++.++++..++.++. .....+||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~-----------~r~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFE-----------DRYVDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHH
Confidence 999999999974 99999998732 122 23455566666655443 3335689999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHHhhhc
Q 000846 1161 AILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVALSR 1237 (1255)
Q Consensus 1161 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl~~~~ 1237 (1255)
||+++|+|||||||||+||+.+.+.+++.|+++.+ ++|+|+|||+++.+. -||+|+||++|++++.|+|+++.+. +
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~-p 228 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ-P 228 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-C
Confidence 99999999999999999999999999999998864 799999999999985 4999999999999999999999875 5
Q ss_pred Cchh
Q 000846 1238 GGAY 1241 (1255)
Q Consensus 1238 ~g~y 1241 (1255)
...|
T Consensus 229 ~~~~ 232 (351)
T PRK11432 229 ASRF 232 (351)
T ss_pred CchH
Confidence 5444
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=391.08 Aligned_cols=217 Identities=32% Similarity=0.572 Sum_probs=184.3
Q ss_pred EEEEEEEEECCCCC--CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCC--HHHHh
Q 000846 1009 IELKNVFFAYPTRP--DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN--LKQLR 1084 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~--~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--~~~lR 1084 (1255)
|+++||+++|+... .+++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 146999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cceEEEccCC--CCCcccHHHHHhcCCC--CCCHHH----HHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHH
Q 000846 1085 SHIALVSQEP--TLFAGTIRENIAYGKA--DARESE----IKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRI 1156 (1255)
Q Consensus 1085 ~~i~~V~Qdp--~LF~gTIreNl~~g~~--~~~~~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrl 1156 (1255)
++|+||||+| .+|+.|++|||.++.. ..+.++ +.++++.+++. +++.......+||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 9999999998 5789999999987532 233333 33334333332 01234555678999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHH
Q 000846 1157 ALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1157 alARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl 1233 (1255)
+|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+. .||||++|++|++++.|++++++
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998753 789999999999985 59999999999999999999987
Q ss_pred h
Q 000846 1234 A 1234 (1255)
Q Consensus 1234 ~ 1234 (1255)
+
T Consensus 234 ~ 234 (287)
T PRK13637 234 K 234 (287)
T ss_pred h
Confidence 5
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=380.46 Aligned_cols=219 Identities=54% Similarity=0.867 Sum_probs=197.6
Q ss_pred ccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHh
Q 000846 341 VRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLR 420 (1255)
Q Consensus 341 ~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r 420 (1255)
..+.++++|++++|+++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....+
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45679999999999753234699999999999999999999999999999999999999999999999998877777788
Q ss_pred cccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhcc
Q 000846 421 SQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIR 500 (1255)
Q Consensus 421 ~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~ 500 (1255)
++++|++|++.+|+.|++||+.++.......++.+......+.+++..+|.|+++.+.+.+.+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999998765444455555555667788999999899999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEE
Q 000846 501 DPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKV 559 (1255)
Q Consensus 501 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i 559 (1255)
+|+++||||||++||+++.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999988778999999999999978999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=382.20 Aligned_cols=224 Identities=34% Similarity=0.579 Sum_probs=190.2
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 3699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCCCCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 000846 1088 ALVSQEPTLFAGTIRENIAYGKAD--ARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKN 1165 (1255)
Q Consensus 1088 ~~V~Qdp~LF~gTIreNl~~g~~~--~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~ 1165 (1255)
+|+||+|.+|+.|++||+.++... ..++++.+.++..++. . ........+||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-------~---~~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLN-------K---EYATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCC-------H---HHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999875321 1122333333333331 0 123345678999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhhhcCchhH
Q 000846 1166 PSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVALSRGGAYY 1242 (1255)
Q Consensus 1166 p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y~ 1242 (1255)
|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|++++++.. +...|.
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-~~~~~~ 228 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN-PQNEVT 228 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC-CCcHHH
Confidence 99999999999999999999999999875 38999999999999875 999999999999999999999864 344455
Q ss_pred HHH
Q 000846 1243 SLI 1245 (1255)
Q Consensus 1243 ~l~ 1245 (1255)
+.+
T Consensus 229 ~~~ 231 (241)
T PRK14250 229 KLF 231 (241)
T ss_pred HHH
Confidence 544
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=400.06 Aligned_cols=219 Identities=26% Similarity=0.472 Sum_probs=189.5
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++||+++|++ +.++|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.++.+++.. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999952 24699999999999999999999999999999999999999999999999999887764 4789
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHH
Q 000846 1088 ALVSQEPTLFA-GTIRENIAYGKA--DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALAR 1160 (1255)
Q Consensus 1088 ~~V~Qdp~LF~-gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalAR 1160 (1255)
+||||++.+|. .|++|||.|+.. ..+ .+++.++++..++.++.... ..+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRK-----------PRELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCC-----------hhhCCHHHHHHHHHHH
Confidence 99999999996 599999998742 122 23455666666766655443 3579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHHhhhc
Q 000846 1161 AILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVALSR 1237 (1255)
Q Consensus 1161 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl~~~~ 1237 (1255)
||+++|+|||||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++.+. +
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~-p 226 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK-P 226 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC-C
Confidence 99999999999999999999999999999998754 789999999999875 5999999999999999999999875 4
Q ss_pred CchhH
Q 000846 1238 GGAYY 1242 (1255)
Q Consensus 1238 ~g~y~ 1242 (1255)
...|.
T Consensus 227 ~~~~~ 231 (356)
T PRK11650 227 ASTFV 231 (356)
T ss_pred ccHHH
Confidence 44443
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=384.69 Aligned_cols=221 Identities=27% Similarity=0.491 Sum_probs=185.9
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHH-hcce
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL-RSHI 1087 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l-R~~i 1087 (1255)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999963 469999999999999999999999999999999999999999999999999988876554 5789
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCCCCHHHH-------HHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHH
Q 000846 1088 ALVSQEPTLFAG-TIRENIAYGKADARESEI-------KKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALA 1159 (1255)
Q Consensus 1088 ~~V~Qdp~LF~g-TIreNl~~g~~~~~~~ei-------~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalA 1159 (1255)
+|+||++.+|.+ |++||+.++........+ ........+.++++.+ |++........+||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999986 999999875421110000 0001112234445444 565556667788999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000846 1160 RAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1160 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
|||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999999999875 68999999999999866 99999999999999999999865
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=389.44 Aligned_cols=212 Identities=32% Similarity=0.544 Sum_probs=185.4
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
-|+++||+++|+. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 3899999999963 24699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCC--CCCcccHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHH
Q 000846 1088 ALVSQEP--TLFAGTIRENIAYGKA--DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALA 1159 (1255)
Q Consensus 1088 ~~V~Qdp--~LF~gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalA 1159 (1255)
+||||+| .+|..|++||+.++.. ..+ ++++.++++..++.++.... ...||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKP-----------PYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-----------hhhCCHHHHHHHHHH
Confidence 9999998 6888999999987631 122 23455566666665544333 347999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHH
Q 000846 1160 RAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1160 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
|||+++|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999875 4899999999999985 5999999999999999998765
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=386.01 Aligned_cols=218 Identities=30% Similarity=0.547 Sum_probs=187.0
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCeecCC--CCH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDIRN--YNL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~ 1080 (1255)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4999999999963 359999999999999999999999999999999999975 589999999999875 345
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC--CC-----CHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHH
Q 000846 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKA--DA-----RESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~~-----~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQk 1153 (1255)
..+|++|+|+||++.+|..|++||+.++.. .. .++++.++++..++.+++. ........+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHH
Confidence 678899999999999999999999986521 11 1234555555555544332 223455678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1154 QrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999855 999999999999999999999
Q ss_pred Hhh
Q 000846 1233 VAL 1235 (1255)
Q Consensus 1233 l~~ 1235 (1255)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 864
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=400.10 Aligned_cols=214 Identities=28% Similarity=0.463 Sum_probs=184.2
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++++|++ +..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+||+++.+.++. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999942 24699999999999999999999999999999999999999999999999999887654 4689
Q ss_pred EEeccCCccCcc-cHHHHhccCCCC--CCH----HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHH
Q 000846 424 GLVNQEPVLFAT-SITENILFGKDG--ASM----DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIAR 496 (1255)
Q Consensus 424 ~~v~Q~~~l~~~-ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lAR 496 (1255)
|||+|++.+|+. ||+|||.|+... .+. +++.++++..+ ++........+|||||||||+|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILE-----------LEPLLDRKPRELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcC-----------ChhHhhCChhhCCHHHHHHHHHHH
Confidence 999999999975 999999987531 122 22334444444 444445555799999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhccC
Q 000846 497 ALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNRG 572 (1255)
Q Consensus 497 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~ 572 (1255)
||+++|++||||||||+||+.+++.+.+.|+++.+ |.|+|+|||+++.+. .||+|++|++|++++.|+++++.+++
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999988754 899999999999875 59999999999999999999998763
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=389.84 Aligned_cols=220 Identities=31% Similarity=0.542 Sum_probs=186.8
Q ss_pred EEEEEEEEECCCCC--CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCC----CHHH
Q 000846 1009 IELKNVFFAYPTRP--DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNY----NLKQ 1082 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~--~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~~~~ 1082 (1255)
|+++||+++|++.+ ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996422 24699999999999999999999999999999999999999999999999999653 3467
Q ss_pred HhcceEEEccCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHcccccccc-ccCCCCCCCChHHHHHHH
Q 000846 1083 LRSHIALVSQEP--TLFAGTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDT-YCGERGVQLSGGQKQRIA 1157 (1255)
Q Consensus 1083 lR~~i~~V~Qdp--~LF~gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~i~~lp~gldt-~vge~G~~LSgGQkQrla 1157 (1255)
+|++|+||||+| .+|..|++|||.++.. ..+.++..+. +.+++..+ ||++ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 899999999998 5888999999987632 2233333221 23344433 5653 345667899999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHHh
Q 000846 1158 LARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1158 lARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
|||||+.+|+||||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+. .||+|++|++|++++.|+++++++
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 4899999999999985 589999999999999999999876
Q ss_pred h
Q 000846 1235 L 1235 (1255)
Q Consensus 1235 ~ 1235 (1255)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 4
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=384.82 Aligned_cols=224 Identities=31% Similarity=0.510 Sum_probs=189.3
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CCceEEECCeecCC--CCH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP-----LKGSVFMDEQDIRN--YNL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~~ 1080 (1255)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5999999999963 3599999999999999999999999999999999999997 48999999999863 345
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC--C-CC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHH
Q 000846 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKA--D-AR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~-~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQk 1153 (1255)
..+|++|+||||++.+|..|++|||.++.. . .+ ++.+.++++.+++.+.+ ++.+++ ...+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHH
Confidence 678899999999999999999999987531 1 11 23445555555543322 233444 4678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1154 QrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.+ ||||++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999855 999999999999999999999
Q ss_pred HhhhcCchhH
Q 000846 1233 VALSRGGAYY 1242 (1255)
Q Consensus 1233 l~~~~~g~y~ 1242 (1255)
.+. ++..|.
T Consensus 237 ~~~-~~~~~~ 245 (254)
T PRK14273 237 FFN-PKNTKT 245 (254)
T ss_pred HhC-CCChHH
Confidence 864 344443
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=399.67 Aligned_cols=217 Identities=29% Similarity=0.461 Sum_probs=186.8
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.. +++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4589999999999999999999999999999999999999999999999999887654 6789
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHH
Q 000846 1088 ALVSQEPTLFA-GTIRENIAYGKA--DARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALAR 1160 (1255)
Q Consensus 1088 ~~V~Qdp~LF~-gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalAR 1160 (1255)
+||+|++.+|. .|++||+.|+.. ..+. +++.++++..+ ++........+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~-----------L~~~~~~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVG-----------LPGSERKYPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CCchhhCChhhCCHHHHHHHHHHH
Confidence 99999999996 699999998732 1122 23333444333 444444556789999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHHhhhc
Q 000846 1161 AILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVALSR 1237 (1255)
Q Consensus 1161 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl~~~~ 1237 (1255)
||+++|++||||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+. -||+|++|++|++++.|+|+++.+. +
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~-p 226 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH-P 226 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-C
Confidence 99999999999999999999999999999998754 789999999999875 5999999999999999999999975 5
Q ss_pred Cchh
Q 000846 1238 GGAY 1241 (1255)
Q Consensus 1238 ~g~y 1241 (1255)
...|
T Consensus 227 ~~~~ 230 (353)
T TIGR03265 227 ATPF 230 (353)
T ss_pred CCHH
Confidence 5455
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=388.88 Aligned_cols=215 Identities=29% Similarity=0.517 Sum_probs=188.4
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
-|+++||+++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999642 34699999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEccCC--CCCcccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHH
Q 000846 1088 ALVSQEP--TLFAGTIRENIAYGKA--DARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALA 1159 (1255)
Q Consensus 1088 ~~V~Qdp--~LF~gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalA 1159 (1255)
+|+||+| .+++.|++|||.++.. ..+. +++.++++..++.+++... ...||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNRE-----------PHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 4677899999987532 1222 3355556666665554433 357999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHh
Q 000846 1160 RAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1160 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
|||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++++
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999998764 789999999999998899999999999999999999875
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=382.31 Aligned_cols=211 Identities=31% Similarity=0.480 Sum_probs=179.9
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .+++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876543 367899
Q ss_pred EEccCCCCCc-ccHHHHHhcCCCC--C----CH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHH
Q 000846 1089 LVSQEPTLFA-GTIRENIAYGKAD--A----RE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIA 1157 (1255)
Q Consensus 1089 ~V~Qdp~LF~-gTIreNl~~g~~~--~----~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrla 1157 (1255)
||||+|.+|. .|++||+.++... . +. +++.++++..+ ++........+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQ-----------LDWLADRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcC-----------ChhhhhcChhhCCHHHHHHHH
Confidence 9999999886 6999999875321 1 11 12333333333 333334455689999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000846 1158 LARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1158 lARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999998755 99999999999999999999976
Q ss_pred h
Q 000846 1235 L 1235 (1255)
Q Consensus 1235 ~ 1235 (1255)
.
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 4
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=398.49 Aligned_cols=206 Identities=32% Similarity=0.514 Sum_probs=179.3
Q ss_pred CccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHH----hcceEEEccCCCCCc-
Q 000846 1024 QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL----RSHIALVSQEPTLFA- 1098 (1255)
Q Consensus 1024 ~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l----R~~i~~V~Qdp~LF~- 1098 (1255)
+++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|++||.++...+..++ |++|+||||++.+|.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 469999999999999999999999999999999999999999999999999999998887 789999999999997
Q ss_pred ccHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 000846 1099 GTIRENIAYGKA--DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLD 1172 (1255)
Q Consensus 1099 gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILlLD 1172 (1255)
.|++|||.++.. ..+ .+++.++++.+++.++ ....+.+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~-----------~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY-----------EHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 599999987632 112 2344555555555444 44455689999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhh-hhcCEEEEEeCCEEEEecCHHHHHhhhcCchh
Q 000846 1173 EATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTI-QKSDTIAVIKNGRVVEQGSHNELVALSRGGAY 1241 (1255)
Q Consensus 1173 EaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti-~~~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y 1241 (1255)
||||+||+.+.+.+++.+.+.. .++|+|+|||+++.+ +.||+|++|++|++++.|+|+++++. +...|
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~-p~~~~ 225 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN-PANEY 225 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC-cccHH
Confidence 9999999999999999999874 389999999999986 45999999999999999999999875 33334
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=383.23 Aligned_cols=222 Identities=33% Similarity=0.541 Sum_probs=187.2
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCC-----CceEEECCeecCCC--CHH
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL-----KGSVFMDEQDIRNY--NLK 1081 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~-----~G~I~idG~di~~i--~~~ 1081 (1255)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 35999999999999999999999999999999999999998 99999999998763 456
Q ss_pred HHhcceEEEccCCCCCcccHHHHHhcCCC--C-CC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHH
Q 000846 1082 QLRSHIALVSQEPTLFAGTIRENIAYGKA--D-AR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQ 1154 (1255)
Q Consensus 1082 ~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~-~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQ 1154 (1255)
.+|++|+|+||++.+|..|++||+.++.. . .+ ++++.++++..++.+++. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 77899999999999999999999986421 1 11 123444455555432221 2234456789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHH
Q 000846 1155 RIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1155 rlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl 1233 (1255)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998767999999999998865 9999999999999999999997
Q ss_pred hhhcCchh
Q 000846 1234 ALSRGGAY 1241 (1255)
Q Consensus 1234 ~~~~~g~y 1241 (1255)
.. +...+
T Consensus 232 ~~-~~~~~ 238 (247)
T TIGR00972 232 TN-PKEKR 238 (247)
T ss_pred hC-CCChH
Confidence 64 34443
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=379.11 Aligned_cols=216 Identities=35% Similarity=0.546 Sum_probs=183.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCH---HHHhc
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHL---KWLRS 421 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r~ 421 (1255)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999963 359999999999999999999999999999999999999999999999999887654 56788
Q ss_pred ccEEeccCCccCcc-cHHHHhccCCC---CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHH
Q 000846 422 QMGLVNQEPVLFAT-SITENILFGKD---GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARA 497 (1255)
Q Consensus 422 ~i~~v~Q~~~l~~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARa 497 (1255)
.++||+|++.+|.. |++||+.++.. ..+.++..+ .+.+.++.+ |+.........+||||||||++||||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIRE-----IVLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999999986 99999987532 122222211 112334444 55444556667999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhc
Q 000846 498 LIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 498 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
|+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 9999999999999999999999999999998743 8999999999998864 99999999999999999998865
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=384.03 Aligned_cols=220 Identities=31% Similarity=0.541 Sum_probs=188.7
Q ss_pred cccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCeecCC--C
Q 000846 1006 RGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDIRN--Y 1078 (1255)
Q Consensus 1006 ~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i 1078 (1255)
.+.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 456999999999963 369999999999999999999999999999999999986 589999999999863 4
Q ss_pred CHHHHhcceEEEccCCCCCcccHHHHHhcCCC---CCCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChH
Q 000846 1079 NLKQLRSHIALVSQEPTLFAGTIRENIAYGKA---DARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGG 1151 (1255)
Q Consensus 1079 ~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~---~~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 1151 (1255)
+...+|++|+|+||+|.+|..|++||+.++.. ..+. +++.++++..++.+.+ .....+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHH
Confidence 56678999999999999999999999987532 1222 3455555555543322 23345567789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHH
Q 000846 1152 QKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHN 1230 (1255)
Q Consensus 1152 QkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~ 1230 (1255)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998778899999999999864 9999999999999999999
Q ss_pred HHHhh
Q 000846 1231 ELVAL 1235 (1255)
Q Consensus 1231 eLl~~ 1235 (1255)
+++..
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 99764
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=395.45 Aligned_cols=214 Identities=32% Similarity=0.508 Sum_probs=185.0
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. +++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 6999999999963 4589999999999999999999999999999999999999999999999999876643 5789
Q ss_pred EEeccCCccCcc-cHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHH
Q 000846 424 GLVNQEPVLFAT-SITENILFGKD--GASM----DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIAR 496 (1255)
Q Consensus 424 ~~v~Q~~~l~~~-ti~~ni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lAR 496 (1255)
+||+|++.+|+. ||+|||.|+.. .... +++.++++.. |+.........+|||||||||||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~-----------gl~~~~~r~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV-----------DLAGFEDRYVDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHH
Confidence 999999999976 99999998743 1122 2233333333 4444445556799999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhccCC
Q 000846 497 ALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNRGE 573 (1255)
Q Consensus 497 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~-~~~d~i~vl~~G~i~~~g~~~~l~~~~~ 573 (1255)
||+.+|++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++.+ ..||+|++|++|++++.|+++++..++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998854 89999999999987 4599999999999999999999987643
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=377.36 Aligned_cols=211 Identities=27% Similarity=0.468 Sum_probs=179.4
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++||+++|+.. ++++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++... ...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5789999999642 24699999999999999999999999999999999999999999999999998764 366788999
Q ss_pred EEccCCCCC-cccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHH
Q 000846 1089 LVSQEPTLF-AGTIRENIAYGKA--DARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161 (1255)
Q Consensus 1089 ~V~Qdp~LF-~gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARA 1161 (1255)
||||++.+| ..|++||+.++.. ..+. +++.++++..++.+. ++ ....+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~----~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK-------AN----KRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-------Hh----ChhhhCCHHHHHHHHHHHH
Confidence 999999998 5799999976421 1122 233344444433222 23 3346799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1162 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999998778999999999999865 999999999999999999876
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=400.51 Aligned_cols=221 Identities=25% Similarity=0.476 Sum_probs=193.7
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++...+|++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 3899999999963 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCC-CcccHHHHHhcCCC----------CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHH
Q 000846 1088 ALVSQEPTL-FAGTIRENIAYGKA----------DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRI 1156 (1255)
Q Consensus 1088 ~~V~Qdp~L-F~gTIreNl~~g~~----------~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrl 1156 (1255)
+||||++.+ |+.|++||+.++.. ..+.+.+.++++..++.++.. ....+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-----------~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-----------RPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 999999987 67899999987642 112345667777777765542 23467999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHHh
Q 000846 1157 ALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1157 alARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
+|||||+++|+||||||||++||+.+...+++.|+++. .++|+|+++|+++.+. .|||+++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999885 5789999999999995 599999999999999999999875
Q ss_pred hhcCchhHHHH
Q 000846 1235 LSRGGAYYSLI 1245 (1255)
Q Consensus 1235 ~~~~g~y~~l~ 1245 (1255)
. ....+++
T Consensus 229 ~---~~l~~~~ 236 (402)
T PRK09536 229 A---DTLRAAF 236 (402)
T ss_pred c---HHHHHHh
Confidence 3 3444554
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=376.01 Aligned_cols=472 Identities=16% Similarity=0.129 Sum_probs=335.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 66 RLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKIS 145 (1255)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~r~~~D~~~i~~~~~~~~~ 145 (1255)
.+..++.+..++...+.++......+.-.-|-..+.++-+...--|+-....|....-..=+|++.|+..+-+.......
T Consensus 91 ~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~ 170 (604)
T COG4178 91 VFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSF 170 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHH
Confidence 33344444444455555555555555555555566666666553333322111111112336999999999888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000846 146 NTLAYLSTFFFCLLFSFILSW-----------R----LSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQ 210 (1255)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~-----------~----l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 210 (1255)
.++.++.+++...++++-++- . +..+++..+++-.++..+++|...+...+..+..+..-.....
T Consensus 171 g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvr 250 (604)
T COG4178 171 GLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVR 250 (604)
T ss_pred HHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHH
Confidence 777777776666655552222 1 1222222233333444566676667766666666777777777
Q ss_pred HHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 000846 211 AVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGV 289 (1255)
Q Consensus 211 ~l~~i~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~ 289 (1255)
.-++.+.|-.|+.|+.+.++.++......+...+.......+..+. ...+++.++-+..++-....|.++.|.+.....
T Consensus 251 v~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~ 330 (604)
T COG4178 251 VRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVG 330 (604)
T ss_pred HHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHH
Confidence 8889999999999999988877766655443333222222111111 222233333333344456689999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCCCCcccc--cCCCccceEEEEeEEEEcCCCCCCcc
Q 000846 290 SIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTP-----AIDTDDKMGK--ALSYVRGEIEFRDVYFCYPSRPDTLV 362 (1255)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~-----~~~~~~~~~~--~~~~~~~~i~~~~v~~~y~~~~~~~~ 362 (1255)
.+......+..+...+..+..-++...|+.++.+.-. ...+...... .....+..|+++|++..-|+. ...
T Consensus 331 aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~l 408 (604)
T COG4178 331 AFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTL 408 (604)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--Cee
Confidence 8888888899999999999999999999998864211 1111110000 001114679999999998854 478
Q ss_pred ccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhc
Q 000846 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENIL 442 (1255)
Q Consensus 363 l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~ 442 (1255)
|++.||++++||.+.|.||||||||||+++|+|++|--+|+|..-. ...+-|+||.|.+-.||+||-|+
T Consensus 409 l~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~ 477 (604)
T COG4178 409 LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREALC 477 (604)
T ss_pred eccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHHHHh
Confidence 9999999999999999999999999999999999999999987652 13589999999999999999999
Q ss_pred cCCCC--CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 000846 443 FGKDG--ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER 520 (1255)
Q Consensus 443 ~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~ 520 (1255)
|+... .+++++.+++.++++.+++.++.+ .+. =...||+|||||+|+||.++++|++++|||+|||||++++.
T Consensus 478 YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~~~----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~ 552 (604)
T COG4178 478 YPNAAPDFSDAELVAVLHKVGLGDLAERLDE-EDR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETED 552 (604)
T ss_pred CCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-cCc----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHH
Confidence 98764 789999999999999999998743 222 34579999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEe
Q 000846 521 IVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLK 555 (1255)
Q Consensus 521 ~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~ 555 (1255)
.+.+.+++...+.|+|-|.||.......++.+-+.
T Consensus 553 ~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 553 RLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 99999999889999999999998887766665554
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=376.51 Aligned_cols=217 Identities=29% Similarity=0.452 Sum_probs=181.0
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHH-hcce
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL-RSHI 1087 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l-R~~i 1087 (1255)
|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.... |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999963 369999999999999999999999999999999999999999999999999988876654 6789
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 000846 1088 ALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNP 1166 (1255)
Q Consensus 1088 ~~V~Qdp~LF~g-TIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p 1166 (1255)
+|+||++.+|.+ |++||+.++.......+..+. +.+++..++ +++........+||||||||++|||||+++|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHH-----HHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 999999876432211111111 111222221 1233334556789999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000846 1167 SILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1167 ~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999875 57899999999998765 99999999999999999998853
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=381.70 Aligned_cols=212 Identities=36% Similarity=0.551 Sum_probs=181.8
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCC---HHHHhc
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN---LKQLRS 1085 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---~~~lR~ 1085 (1255)
|+++||+++|+. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999963 146999999999999999999999999999999999999999999999999998876 456788
Q ss_pred ceEEEccCCCCCc-ccHHHHHhcCCCC-----------CC---HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCCh
Q 000846 1086 HIALVSQEPTLFA-GTIRENIAYGKAD-----------AR---ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSG 1150 (1255)
Q Consensus 1086 ~i~~V~Qdp~LF~-gTIreNl~~g~~~-----------~~---~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 1150 (1255)
+++|+||++.+|. .|++||+.++... .+ ++++.++++.. |++......+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV-----------GLLDKAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc-----------CChhhhCCCcccCCH
Confidence 9999999998887 6999999865321 01 12233333333 333344556778999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEec
Q 000846 1151 GQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQG 1227 (1255)
Q Consensus 1151 GQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G 1227 (1255)
|||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999875 3899999999999997 59999999999999999
Q ss_pred CHHHHH
Q 000846 1228 SHNELV 1233 (1255)
Q Consensus 1228 ~~~eLl 1233 (1255)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 999974
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=377.50 Aligned_cols=203 Identities=31% Similarity=0.479 Sum_probs=173.4
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHH---HHhc
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLK---QLRS 1085 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR~ 1085 (1255)
|+++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 24699999999999999999999999999999999999999999999999999876543 4788
Q ss_pred ceEEEccCCCCCc-ccHHHHHhcCCC------CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHH
Q 000846 1086 HIALVSQEPTLFA-GTIRENIAYGKA------DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIAL 1158 (1255)
Q Consensus 1086 ~i~~V~Qdp~LF~-gTIreNl~~g~~------~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlal 1158 (1255)
+++|+||+|.+|. .|++||+.++.. ...++++.++++..++.++.. ....+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-----------ALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHH
Confidence 9999999999886 599999986421 112344556666666554433 3345799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 000846 1159 ARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRV 1223 (1255)
Q Consensus 1159 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~i 1223 (1255)
||||+++|+||||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 47899999999999875 899999999975
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=379.34 Aligned_cols=219 Identities=30% Similarity=0.475 Sum_probs=194.9
Q ss_pred cccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhc
Q 000846 1006 RGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS 1085 (1255)
Q Consensus 1006 ~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~ 1085 (1255)
.+.|+++|+++.. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||
T Consensus 37 ~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------- 98 (282)
T cd03291 37 DNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98 (282)
T ss_pred CCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------
Confidence 4569999999952 3599999999999999999999999999999999999999999999998
Q ss_pred ceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 000846 1086 HIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKN 1165 (1255)
Q Consensus 1086 ~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~ 1165 (1255)
+|+|+||++.+|++|++||+.++.. ..+.++.++++..++.+++..+|.++++.+++.+.+||||||||++|||||+++
T Consensus 99 ~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~ 177 (282)
T cd03291 99 RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKD 177 (282)
T ss_pred EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 3999999999999999999987643 234456677777888899999999999999999999999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHH-HHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhhhcCchhHHH
Q 000846 1166 PSILLLDEATSALDSVSESLVQEAL-EKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSL 1244 (1255)
Q Consensus 1166 p~ILlLDEaTSaLD~~te~~I~~~l-~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y~~l 1244 (1255)
|+||||||||++||+++...+.+.+ ++..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. ...|.+-
T Consensus 178 p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~--~~~~~~~ 255 (282)
T cd03291 178 ADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL--RPDFSSK 255 (282)
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc--chHHHHH
Confidence 9999999999999999999888754 555668999999999999989999999999999999999999763 3455544
Q ss_pred H
Q 000846 1245 I 1245 (1255)
Q Consensus 1245 ~ 1245 (1255)
+
T Consensus 256 ~ 256 (282)
T cd03291 256 L 256 (282)
T ss_pred H
Confidence 3
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=386.52 Aligned_cols=217 Identities=31% Similarity=0.541 Sum_probs=188.5
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
-|+++||+++|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCC--CCCcccHHHHHhcCCC--CCCHHH----HHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHH
Q 000846 1088 ALVSQEP--TLFAGTIRENIAYGKA--DARESE----IKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALA 1159 (1255)
Q Consensus 1088 ~~V~Qdp--~LF~gTIreNl~~g~~--~~~~~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalA 1159 (1255)
+|+||+| .++..|+.|||.++.. ..+.++ +.++++.+++.++.. .....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-----------REPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 9999998 4778899999986521 223333 344555555544432 33567999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1160 RAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1160 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
|||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998864 7999999999999988999999999999999999999763
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=378.26 Aligned_cols=216 Identities=29% Similarity=0.539 Sum_probs=184.3
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998776544 46899
Q ss_pred EEccCCCC-CcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 000846 1089 LVSQEPTL-FAGTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKN 1165 (1255)
Q Consensus 1089 ~V~Qdp~L-F~gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~ 1165 (1255)
|+||++.+ +..|++||+.++.. ..+.++.. ..+.+++..+ |++........+||||||||++|||||+++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999987 56899999976432 12222211 1223344433 555555666778999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1166 PSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1166 p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
|+||||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999875 48999999999999988999999999999999999999864
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=388.22 Aligned_cols=216 Identities=25% Similarity=0.489 Sum_probs=182.7
Q ss_pred EEEEEEEEECCCCC--CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCC----CCHHH
Q 000846 1009 IELKNVFFAYPTRP--DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRN----YNLKQ 1082 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~--~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~----i~~~~ 1082 (1255)
|+++||+|+|+... .+++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997321 1359999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEccCC--CCCcccHHHHHhcCCC--CCCHHH----HHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHH
Q 000846 1083 LRSHIALVSQEP--TLFAGTIRENIAYGKA--DARESE----IKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQ 1154 (1255)
Q Consensus 1083 lR~~i~~V~Qdp--~LF~gTIreNl~~g~~--~~~~~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQ 1154 (1255)
+|++++||+|+| .+|..|+.||+.++.. ..+.++ +.++++..++. +........+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----------~~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA----------DEFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCC----------hhhccCCcccCCHHHHH
Confidence 899999999998 7999999999987632 123333 22333333331 11234556789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHH
Q 000846 1155 RIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1155 rlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
|++|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998875 4899999999999885 5999999999999999999998
Q ss_pred Hh
Q 000846 1233 VA 1234 (1255)
Q Consensus 1233 l~ 1234 (1255)
..
T Consensus 232 ~~ 233 (288)
T PRK13643 232 FQ 233 (288)
T ss_pred Hc
Confidence 75
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=387.24 Aligned_cols=219 Identities=32% Similarity=0.517 Sum_probs=182.9
Q ss_pred EEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHH----hc
Q 000846 1010 ELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL----RS 1085 (1255)
Q Consensus 1010 ~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l----R~ 1085 (1255)
.++||+++|. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ ++
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 4567777775 2468999999999999999999999999999999999999999999999999988765543 46
Q ss_pred ceEEEccCCCCCc-ccHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHH
Q 000846 1086 HIALVSQEPTLFA-GTIRENIAYGKA--DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIAL 1158 (1255)
Q Consensus 1086 ~i~~V~Qdp~LF~-gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlal 1158 (1255)
+++|+||++.+|. .|++||+.++.. ..+ ++++.++++..++.+++.. ...+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK-----------YPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------CcccCCHHHHHHHHH
Confidence 8999999999885 699999976421 111 2344555555555444333 345799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1159 ARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1159 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
||||+++|+||||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++++.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999875 37999999999998854 999999999999999999999875
Q ss_pred hcCchhHH
Q 000846 1236 SRGGAYYS 1243 (1255)
Q Consensus 1236 ~~~g~y~~ 1243 (1255)
+...|.+
T Consensus 252 -~~~~~~~ 258 (269)
T cd03294 252 -PANDYVR 258 (269)
T ss_pred -cCcHHHH
Confidence 4444543
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=397.36 Aligned_cols=217 Identities=29% Similarity=0.473 Sum_probs=188.3
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+||+++.+.++. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999973 4589999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEeccCCccCcc-cHHHHhccCCCC--CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhcc
Q 000846 424 GLVNQEPVLFAT-SITENILFGKDG--ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIR 500 (1255)
Q Consensus 424 ~~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~ 500 (1255)
|||+|++.+|+. ||+|||.|+... .+..+. ...+++.++.+ |++......+.+||||||||++|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~-----~~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEV-----AERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999974 999999987431 111221 12234455555 66666777788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhccC
Q 000846 501 DPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNRG 572 (1255)
Q Consensus 501 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~ 572 (1255)
+|++||||||||+||+.+++.+.+.|+++.+ |.|+|+|||+++.+. .||+|++|++|++++.|+++++..++
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999988743 899999999999875 59999999999999999999998764
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=396.46 Aligned_cols=203 Identities=32% Similarity=0.517 Sum_probs=177.5
Q ss_pred CccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHH----hcccEEeccCCccCcc
Q 000846 360 TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL----RSQMGLVNQEPVLFAT 435 (1255)
Q Consensus 360 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~~ 435 (1255)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++...+...+ |++++||+|++++|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 459999999999999999999999999999999999999999999999999999888777 7899999999999985
Q ss_pred -cHHHHhccCCCC--CCH----HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 000846 436 -SITENILFGKDG--ASM----DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLD 508 (1255)
Q Consensus 436 -ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~illlD 508 (1255)
||+|||.++.+. .+. +++.++++.+ |++...++.+.+|||||||||+|||||+.+|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v-----------gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLV-----------GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999986431 111 2233333333 5555566667799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhccCC
Q 000846 509 EATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNRGE 573 (1255)
Q Consensus 509 Epts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~-~~~d~i~vl~~G~i~~~g~~~~l~~~~~ 573 (1255)
||||+||+.+++.+++.+.++. .|+|+|+|||+++.+ +.||+|++|++|++++.|++++++.++.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~ 222 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPA 222 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcc
Confidence 9999999999999999998874 389999999999986 5599999999999999999999987643
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=386.19 Aligned_cols=217 Identities=29% Similarity=0.507 Sum_probs=186.1
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++||+++|++....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999742224599999999999999999999999999999999999999999999999999887777888999
Q ss_pred EEeccCCc--cCcccHHHHhccCCCC--CCHH----HHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHH
Q 000846 424 GLVNQEPV--LFATSITENILFGKDG--ASMD----DVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIA 495 (1255)
Q Consensus 424 ~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lA 495 (1255)
+||+|+|. ++..||+|||.++... .+.+ ++.++++.. |++........+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELV-----------GMQDFKEREPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC-----------CCHhHhhCCcccCCHHHHHHHHHH
Confidence 99999984 5567999999987421 2222 233333333 444445555679999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhcc
Q 000846 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 496 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
|||+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 8999999999999878999999999999999999988653
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=382.94 Aligned_cols=218 Identities=30% Similarity=0.471 Sum_probs=185.1
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CCceEEECCeecC--CCCH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP-----LKGSVFMDEQDIR--NYNL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~--~i~~ 1080 (1255)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999987 4999999999997 4556
Q ss_pred HHHhcceEEEccCCCCCcc-cHHHHHhcCCC--C--CCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChH
Q 000846 1081 KQLRSHIALVSQEPTLFAG-TIRENIAYGKA--D--ARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGG 1151 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~g-TIreNl~~g~~--~--~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 1151 (1255)
..+|++++|+||++.+|.. |++||+.++.. . .+. +++.++++..++.+++. ........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 6788999999999999975 99999986421 1 011 23444444444432221 2234556789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHH
Q 000846 1152 QKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHN 1230 (1255)
Q Consensus 1152 QkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~ 1230 (1255)
||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998778999999999999865 9999999999999999999
Q ss_pred HHHhh
Q 000846 1231 ELVAL 1235 (1255)
Q Consensus 1231 eLl~~ 1235 (1255)
++++.
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 99864
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=383.74 Aligned_cols=220 Identities=31% Similarity=0.517 Sum_probs=188.3
Q ss_pred cccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CCceEEECCeecCC--C
Q 000846 1006 RGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP-----LKGSVFMDEQDIRN--Y 1078 (1255)
Q Consensus 1006 ~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i 1078 (1255)
.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999963 4699999999999999999999999999999999999975 89999999999875 3
Q ss_pred CHHHHhcceEEEccCCCCCcccHHHHHhcCCC--CC--C----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCCh
Q 000846 1079 NLKQLRSHIALVSQEPTLFAGTIRENIAYGKA--DA--R----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSG 1150 (1255)
Q Consensus 1079 ~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~~--~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 1150 (1255)
+...+|++++|+||+|.+|..|++||+.++.. .. + ++++.++++..++.+++. ......+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 45678899999999999998999999986421 10 1 234455566555543322 223455678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCH
Q 000846 1151 GQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSH 1229 (1255)
Q Consensus 1151 GQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~ 1229 (1255)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998778899999999999855 899999999999999999
Q ss_pred HHHHhh
Q 000846 1230 NELVAL 1235 (1255)
Q Consensus 1230 ~eLl~~ 1235 (1255)
++++..
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 999854
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=395.31 Aligned_cols=216 Identities=28% Similarity=0.447 Sum_probs=185.0
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|++||.++...+. .+++|+
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 889999999963 359999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEccCCCCCc-ccHHHHHhcCCCC------CCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHH
Q 000846 1089 LVSQEPTLFA-GTIRENIAYGKAD------ARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIA 1157 (1255)
Q Consensus 1089 ~V~Qdp~LF~-gTIreNl~~g~~~------~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrla 1157 (1255)
||||++.+|. .|++||+.++... .+. +++.++++..++.++ ......+||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHL-----------ADRYPAQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHH
Confidence 9999999997 5999999986321 122 234444554444333 23345689999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000846 1158 LARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1158 lARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
|||||+++|++||||||||+||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998764 7899999999998765 99999999999999999999987
Q ss_pred hhcCchh
Q 000846 1235 LSRGGAY 1241 (1255)
Q Consensus 1235 ~~~~g~y 1241 (1255)
. +...|
T Consensus 227 ~-p~~~~ 232 (353)
T PRK10851 227 E-PATRF 232 (353)
T ss_pred C-ccchH
Confidence 5 44444
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=377.60 Aligned_cols=210 Identities=38% Similarity=0.576 Sum_probs=178.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhccc-----CCCccEEEECCeecCCCC--HH
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFY-----DPVEGEVLLDGYKIRRLH--LK 417 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~-----~~~~G~i~~~g~~~~~~~--~~ 417 (1255)
|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 478999999964 35999999999999999999999999999999999999 999999999999987766 56
Q ss_pred HHhcccEEeccCCccCcccHHHHhccCCCCC---C----HHHHHHHHHHhchHHHHhcCCCcccchhcCC--CCCCChHH
Q 000846 418 WLRSQMGLVNQEPVLFATSITENILFGKDGA---S----MDDVISAAKAANAHDFITKLPDGYETQVGQL--GFQMSGGQ 488 (1255)
Q Consensus 418 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~--g~~LSgGq 488 (1255)
.++++++|++|++.+|..|++||+.++.... . .+++.++++.. |++...... +.+|||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~~LSgG~ 146 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKA-----------ALWDEVKDRLHALGLSGGQ 146 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHc-----------CCChHHhccCCcccCCHHH
Confidence 6788999999999999779999998753211 1 11222333333 343333333 47999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhH
Q 000846 489 KQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNE 567 (1255)
Q Consensus 489 rqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~ 567 (1255)
|||++|||||+++|++|||||||++||+.+++.+.+.|+++.+.+|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999999999999999999999999999999999998865589999999999875 599999999999999998765
Q ss_pred H
Q 000846 568 L 568 (1255)
Q Consensus 568 l 568 (1255)
+
T Consensus 227 ~ 227 (227)
T cd03260 227 I 227 (227)
T ss_pred C
Confidence 3
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-42 Score=386.35 Aligned_cols=219 Identities=32% Similarity=0.524 Sum_probs=182.6
Q ss_pred EEEEEEEEECCCCC--CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCC----CCHHH
Q 000846 1009 IELKNVFFAYPTRP--DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRN----YNLKQ 1082 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~--~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~----i~~~~ 1082 (1255)
|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996421 1469999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEccCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHcccccccc-ccCCCCCCCChHHHHHHH
Q 000846 1083 LRSHIALVSQEP--TLFAGTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDT-YCGERGVQLSGGQKQRIA 1157 (1255)
Q Consensus 1083 lR~~i~~V~Qdp--~LF~gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~i~~lp~gldt-~vge~G~~LSgGQkQrla 1157 (1255)
.|++|+||||+| .+|+.|++||+.++.. ..+.++..+. +.+.++.+ |++. .......+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK-----AREMIELV--GLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence 888999999998 6888999999987632 2233332221 11222222 3331 224456789999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHHh
Q 000846 1158 LARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1158 lARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
|||||+.+|+||||||||++||+.+...+.+.|++..+ |.|||+|||+++.+. .||||++|++|++++.|+++++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999998753 789999999999985 499999999999999999999875
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=395.49 Aligned_cols=220 Identities=33% Similarity=0.594 Sum_probs=187.2
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHH---Hh
Q 000846 345 IEFRDVYFCYPSRP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW---LR 420 (1255)
Q Consensus 345 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~r 420 (1255)
|+++|++++|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 346999999999999999999999999999999999999999999999999998876543 47
Q ss_pred cccEEeccCCccCc-ccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHH
Q 000846 421 SQMGLVNQEPVLFA-TSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARA 497 (1255)
Q Consensus 421 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARa 497 (1255)
++|+||+|++.+|. .|++||+.++.. ..+.++.. ..+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIK-----ARVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 89999999999987 599999987532 11222211 1223445554 56555666778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhcc
Q 000846 498 LIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 498 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
|+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998743 8999999999999865 999999999999999999999765
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=379.96 Aligned_cols=212 Identities=32% Similarity=0.512 Sum_probs=180.4
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCH---HHHhc
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNL---KQLRS 1085 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR~ 1085 (1255)
|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++..++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 3469999999999999999999999999999999999999999999999999987654 34688
Q ss_pred ceEEEccCCCCCc-ccHHHHHhcCCCCC-----------C---HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCCh
Q 000846 1086 HIALVSQEPTLFA-GTIRENIAYGKADA-----------R---ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSG 1150 (1255)
Q Consensus 1086 ~i~~V~Qdp~LF~-gTIreNl~~g~~~~-----------~---~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 1150 (1255)
+++||||++.+|. .|++||+.++.... . ++++.++++..+ ++........+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVG-----------LADKAYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcC-----------cHhhhcCCcccCCH
Confidence 9999999998886 69999998653210 1 122333333333 33334455678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000846 1151 GQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227 (1255)
Q Consensus 1151 GQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1227 (1255)
|||||++|||||+++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.+ ||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999875 37899999999999854 9999999999999999
Q ss_pred CHHHHH
Q 000846 1228 SHNELV 1233 (1255)
Q Consensus 1228 ~~~eLl 1233 (1255)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999973
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=374.45 Aligned_cols=203 Identities=36% Similarity=0.578 Sum_probs=172.2
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ..+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 478999999963 46999999999999999999999999999999999999999999999999998654 3577899
Q ss_pred EEccCCCCCc-ccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHH
Q 000846 1089 LVSQEPTLFA-GTIRENIAYGKAD--ARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161 (1255)
Q Consensus 1089 ~V~Qdp~LF~-gTIreNl~~g~~~--~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARA 1161 (1255)
|+||+|.+|. .|++||+.++... .+. +++.++++..++ +........+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGL-----------EGLLNRYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhhhhcChhhCCHHHHHHHHHHHH
Confidence 9999998886 6999999765321 111 233344444443 333344456899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000846 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227 (1255)
Q Consensus 1162 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1227 (1255)
|+++|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.+ ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999875 38999999999998765 9999999999999876
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=379.18 Aligned_cols=218 Identities=34% Similarity=0.591 Sum_probs=184.2
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
++++||+++|++. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999641 46999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHcccccccc--ccCCCCCCCChHHHHHHHHHHHHc
Q 000846 1089 LVSQEPTLFA-GTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDT--YCGERGVQLSGGQKQRIALARAIL 1163 (1255)
Q Consensus 1089 ~V~Qdp~LF~-gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~i~~lp~gldt--~vge~G~~LSgGQkQrlalARALl 1163 (1255)
|+||+|.+|. .|++||+.++.. ..+.++. ...+.+++..+ |++. .....+.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999986 699999976521 1111111 11223333333 3332 345566789999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1164 KNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1164 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999998753 8999999999998754 999999999999999999999764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=395.48 Aligned_cols=218 Identities=31% Similarity=0.512 Sum_probs=186.5
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCC--ceEEECCeecCCCCHHHHh
Q 000846 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLK--GSVFMDEQDIRNYNLKQLR 1084 (1255)
Q Consensus 1007 g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~--G~I~idG~di~~i~~~~lR 1084 (1255)
|.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++ |+|.+||.++...+. .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 57999999999963 369999999999999999999999999999999999999999 999999999987665 36
Q ss_pred cceEEEccCCCCCcc-cHHHHHhcCCC--CCCHH----HHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHH
Q 000846 1085 SHIALVSQEPTLFAG-TIRENIAYGKA--DARES----EIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIA 1157 (1255)
Q Consensus 1085 ~~i~~V~Qdp~LF~g-TIreNl~~g~~--~~~~~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrla 1157 (1255)
++|+||+|++.+|.. |++|||.|+.. ..+.+ ++.++++..++.++ ......+||||||||+|
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~~~~~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDA-----------AAHLPAQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCch-----------hhCChhhCCHHHHHHHH
Confidence 789999999999975 99999987632 12222 33444444444333 34445689999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC---CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHH
Q 000846 1158 LARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM---GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1158 lARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~---~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl 1233 (1255)
|||||+++|+|||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||+|+||++|++++.|+++++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999998754 6899999999998754 9999999999999999999998
Q ss_pred hhhcCchh
Q 000846 1234 ALSRGGAY 1241 (1255)
Q Consensus 1234 ~~~~~g~y 1241 (1255)
+. +...|
T Consensus 228 ~~-p~~~~ 234 (362)
T TIGR03258 228 DA-PADGF 234 (362)
T ss_pred hC-cCcHH
Confidence 75 44444
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-42 Score=380.64 Aligned_cols=225 Identities=28% Similarity=0.436 Sum_probs=189.1
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CCceEEECCeecCCCCHHH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP-----LKGSVFMDEQDIRNYNLKQ 1082 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i~~~~ 1082 (1255)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 3899999999963 3699999999999999999999999999999999999974 6999999999999888888
Q ss_pred HhcceEEEccCCCCC-cccHHHHHhcCCC--C--CC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHH
Q 000846 1083 LRSHIALVSQEPTLF-AGTIRENIAYGKA--D--AR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1083 lR~~i~~V~Qdp~LF-~gTIreNl~~g~~--~--~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQk 1153 (1255)
+|++|+|+||+|.+| +.|++||+.++.. . .. ++++.++++..++.+.+. ........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHH
Confidence 999999999999755 6799999986531 1 01 234455555555433221 122344567999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHH
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1154 QrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999985 5999999999999999999999
Q ss_pred HhhhcCchhHH
Q 000846 1233 VALSRGGAYYS 1243 (1255)
Q Consensus 1233 l~~~~~g~y~~ 1243 (1255)
.+. +...+.+
T Consensus 233 ~~~-~~~~~~~ 242 (250)
T PRK14247 233 FTN-PRHELTE 242 (250)
T ss_pred HcC-CccHHHH
Confidence 864 3333433
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=384.13 Aligned_cols=219 Identities=32% Similarity=0.560 Sum_probs=185.4
Q ss_pred EEEEeEEEEcCCCC--CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCC--HHHHh
Q 000846 345 IEFRDVYFCYPSRP--DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH--LKWLR 420 (1255)
Q Consensus 345 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~--~~~~r 420 (1255)
|+++||+++|+... .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 146999999999999999999999999999999999999999999999999997654 35678
Q ss_pred cccEEeccCC--ccCcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCccc--chhcCCCCCCChHHHHHHHH
Q 000846 421 SQMGLVNQEP--VLFATSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYE--TQVGQLGFQMSGGQKQRIAI 494 (1255)
Q Consensus 421 ~~i~~v~Q~~--~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~--t~~~~~g~~LSgGqrqri~l 494 (1255)
++||||||+| .+|+.|++|||.++.. ..+.++..+. +.+.++.+ |+. +.....+.+||||||||++|
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR-----VKRAMNIV--GLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH-----HHHHHHHc--CCCchhhccCCcccCCHHHHHHHHH
Confidence 8999999998 5788899999998632 1233322221 12333433 554 45667788999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 495 ARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 495 ARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
||||+.+|++|||||||++||+.+...+.+.|+++.+ |+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999998743 899999999999885 699999999999999999999865
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=377.28 Aligned_cols=215 Identities=35% Similarity=0.519 Sum_probs=182.4
Q ss_pred EEEEEEEEECCCCC-CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHH---HHh
Q 000846 1009 IELKNVFFAYPTRP-DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLK---QLR 1084 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~-~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR 1084 (1255)
|+++|++++|+.+. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996421 12699999999999999999999999999999999999999999999999999877654 357
Q ss_pred cceEEEccCCCCCc-ccHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHH
Q 000846 1085 SHIALVSQEPTLFA-GTIRENIAYGKA--DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIA 1157 (1255)
Q Consensus 1085 ~~i~~V~Qdp~LF~-gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrla 1157 (1255)
++++|+||+|.+|. .|++||+.++.. ..+ .+++.++++..++ +........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGL-----------EDKADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----------hhhhhcChhhCCHHHHHHHH
Confidence 89999999999997 699999976421 111 2233444444443 33334455789999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000846 1158 LARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1158 lARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
||||++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|+++++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999999865 99999999999999999999865
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=378.70 Aligned_cols=221 Identities=29% Similarity=0.506 Sum_probs=187.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHH-Hhccc
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW-LRSQM 423 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 423 (1255)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 35999999999999999999999999999999999999999999999999998877654 35679
Q ss_pred EEeccCCccCcc-cHHHHhccCCCCCCHHHH-------HHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHH
Q 000846 424 GLVNQEPVLFAT-SITENILFGKDGASMDDV-------ISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIA 495 (1255)
Q Consensus 424 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~-------~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lA 495 (1255)
+|++|++.+|.+ |++||+.++........+ ........+++.++.+ |++...+....+||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999987 999999876421110000 0011112334556666 777777888899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhc
Q 000846 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 496 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
|||+.+|+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999999998875 68999999999999865 99999999999999999998865
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=394.51 Aligned_cols=217 Identities=33% Similarity=0.544 Sum_probs=188.5
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++|++++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+.. +++|
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4999999999963 4589999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHH
Q 000846 1088 ALVSQEPTLFAG-TIRENIAYGKA--DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALAR 1160 (1255)
Q Consensus 1088 ~~V~Qdp~LF~g-TIreNl~~g~~--~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalAR 1160 (1255)
+||+|++.+|.. |++|||.|+.. ..+ .+++.++++..++.++.... ..+||||||||+||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------p~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRK-----------PHQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHHHHH
Confidence 999999999965 99999998642 122 23455566666666555444 3579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHHhhhc
Q 000846 1161 AILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVALSR 1237 (1255)
Q Consensus 1161 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl~~~~ 1237 (1255)
||+++|++||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++++. +
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~-p 236 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE-P 236 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-c
Confidence 99999999999999999999999999999998764 789999999999875 5999999999999999999999875 4
Q ss_pred Cchh
Q 000846 1238 GGAY 1241 (1255)
Q Consensus 1238 ~g~y 1241 (1255)
...|
T Consensus 237 ~~~~ 240 (375)
T PRK09452 237 KNLF 240 (375)
T ss_pred ccHH
Confidence 4444
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-42 Score=382.56 Aligned_cols=239 Identities=34% Similarity=0.492 Sum_probs=190.5
Q ss_pred EEEEEEEEECCCC------CCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHH
Q 000846 1009 IELKNVFFAYPTR------PDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ 1082 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~------~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~ 1082 (1255)
|+++||+++|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 1356999999999999999999999999999999999999999999999999998876543
Q ss_pred ---HhcceEEEccCCC--CC-cccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHccccccc-cccCCCCCCCChHH
Q 000846 1083 ---LRSHIALVSQEPT--LF-AGTIRENIAYGKA---DARESEIKKAAVLANAHEFISGMKDGYD-TYCGERGVQLSGGQ 1152 (1255)
Q Consensus 1083 ---lR~~i~~V~Qdp~--LF-~gTIreNl~~g~~---~~~~~ei~~al~~a~l~~~i~~lp~gld-t~vge~G~~LSgGQ 1152 (1255)
+|++|+|+||+|. ++ ..|++||+.++.. ....++. ...+.++++.+ |++ ......+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQ-----KARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 6788999999983 44 4799999964311 1111111 11122333333 343 23345667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCH
Q 000846 1153 KQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSH 1229 (1255)
Q Consensus 1153 kQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~ 1229 (1255)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999998753 7899999999999975 999999999999999999
Q ss_pred HHHHhhhcCchhHHHHhhhcCCCCCC
Q 000846 1230 NELVALSRGGAYYSLIKPQGGSSPFR 1255 (1255)
Q Consensus 1230 ~eLl~~~~~g~y~~l~~~~~~~~~~~ 1255 (1255)
++++.. ++..+..+...-....|+|
T Consensus 236 ~~~~~~-~~~~~~~~~~~~~~~~~~~ 260 (265)
T TIGR02769 236 AQLLSF-KHPAGRNLQSAVLPEHPVR 260 (265)
T ss_pred HHHcCC-CCHHHHHHHHhccCCCCcc
Confidence 999864 3344444554444445554
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=394.41 Aligned_cols=215 Identities=30% Similarity=0.506 Sum_probs=184.9
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcc
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ 422 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 422 (1255)
..++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++. ++.
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 87 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRH 87 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 35999999999963 3589999999999999999999999999999999999999999999999999876654 468
Q ss_pred cEEeccCCccCcc-cHHHHhccCCCC--CCH----HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHH
Q 000846 423 MGLVNQEPVLFAT-SITENILFGKDG--ASM----DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIA 495 (1255)
Q Consensus 423 i~~v~Q~~~l~~~-ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lA 495 (1255)
++||+|++.+|+. ||+|||.|+... .+. +++.++++..+ ++........+|||||||||+||
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~p~~LSgGq~QRVaLA 156 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQ-----------LEEFAQRKPHQLSGGQQQRVAIA 156 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcC-----------CchhhhCChhhCCHHHHHHHHHH
Confidence 9999999999976 999999987531 122 22333444444 44444455579999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhccC
Q 000846 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNRG 572 (1255)
Q Consensus 496 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~ 572 (1255)
|||+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+. .||+|++|++|++++.|+++++..++
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999998753 899999999999875 59999999999999999999998764
Q ss_pred C
Q 000846 573 E 573 (1255)
Q Consensus 573 ~ 573 (1255)
.
T Consensus 237 ~ 237 (375)
T PRK09452 237 K 237 (375)
T ss_pred c
Confidence 3
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=385.26 Aligned_cols=214 Identities=29% Similarity=0.521 Sum_probs=184.4
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecC--CCCHHHHhc
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIR--NYNLKQLRS 1085 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~~~~lR~ 1085 (1255)
-|+++||+++|+. ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 3899999999962 346999999999999999999999999999999999999999999999999984 344567899
Q ss_pred ceEEEccCC--CCCcccHHHHHhcCCC--CCCHH----HHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHH
Q 000846 1086 HIALVSQEP--TLFAGTIRENIAYGKA--DARES----EIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIA 1157 (1255)
Q Consensus 1086 ~i~~V~Qdp--~LF~gTIreNl~~g~~--~~~~~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrla 1157 (1255)
+|+|+||+| .+|+.|++||+.++.. ..+.+ .+.++++..++.+ .......+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhCCcccCCHHHHHHHH
Confidence 999999998 5788999999987532 22322 3344444444433 234456789999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHHh
Q 000846 1158 LARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1158 lARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|+++++++
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998764 899999999999986 599999999999999999999876
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=380.56 Aligned_cols=219 Identities=34% Similarity=0.511 Sum_probs=186.6
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCeecCC--CC
Q 000846 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDIRN--YN 1079 (1255)
Q Consensus 1007 g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~ 1079 (1255)
..|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 35999999999963 469999999999999999999999999999999999997 689999999999863 56
Q ss_pred HHHHhcceEEEccCCCCCcccHHHHHhcCCCC--CC---HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHH
Q 000846 1080 LKQLRSHIALVSQEPTLFAGTIRENIAYGKAD--AR---ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQ 1154 (1255)
Q Consensus 1080 ~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~--~~---~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQ 1154 (1255)
...+|++++||||++.+|..|++||+.++... .. ++++.++++..++.+ +++........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHHH
Confidence 67789999999999999999999999875421 11 233444555554432 2223344556789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeC-----------CE
Q 000846 1155 RIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQ-KSDTIAVIKN-----------GR 1222 (1255)
Q Consensus 1155 rlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~Vl~~-----------G~ 1222 (1255)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+. .||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 99999999999999999999999999999999999999877899999999999885 4999999996 67
Q ss_pred EEEecCHHHHHhh
Q 000846 1223 VVEQGSHNELVAL 1235 (1255)
Q Consensus 1223 ive~G~~~eLl~~ 1235 (1255)
++|.|+++++++.
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999999864
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=367.38 Aligned_cols=200 Identities=37% Similarity=0.558 Sum_probs=181.6
Q ss_pred EEEEEEEEECCCCCC--CccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcc
Q 000846 1009 IELKNVFFAYPTRPD--QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~--~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1086 (1255)
|+++||+++|++..+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999964311 3699999999999999999999999999999999999999999999999 6
Q ss_pred eEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 000846 1087 IALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNP 1166 (1255)
Q Consensus 1087 i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p 1166 (1255)
|+|+||+|.+|++|++||+.++.. .++++..++++.+++.+++..+|.|+++.+++.+.+||+|||||++|||||+.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999988643 3456777888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHH-HHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCE
Q 000846 1167 SILLLDEATSALDSVSESLVQE-ALEKMM-MGRTCVVVAHRLSTIQKSDTIAVIKNGR 1222 (1255)
Q Consensus 1167 ~ILlLDEaTSaLD~~te~~I~~-~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ 1222 (1255)
+++||||||++||+++.+.+.+ .+++.. +++|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888877 466553 4689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=377.79 Aligned_cols=218 Identities=29% Similarity=0.489 Sum_probs=185.5
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC---CCccEEEECCeecCCCCHHHHh
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD---PVEGEVLLDGYKIRRLHLKWLR 420 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~r 420 (1255)
.|+++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.+.+....|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999973 359999999999999999999999999999999999984 6999999999999887777888
Q ss_pred cccEEeccCCccCcccHHHHhccCCCC--C---C---HHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHH
Q 000846 421 SQMGLVNQEPVLFATSITENILFGKDG--A---S---MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRI 492 (1255)
Q Consensus 421 ~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~---~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri 492 (1255)
++++|++|+|.+|+.|++||+.++... . . .+++.+.++..++.+++ .+...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV-------KDKLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh-------hHHhcCCcccCCHHHHHHH
Confidence 899999999999999999999875311 0 0 11122223333332211 2345667789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhcc
Q 000846 493 AIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 493 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
+||||++++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999998877899999999999885 5999999999999999999998754
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=384.62 Aligned_cols=217 Identities=27% Similarity=0.487 Sum_probs=187.0
Q ss_pred cEEEEEEEEECCCCC---CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCC-HHHH
Q 000846 1008 RIELKNVFFAYPTRP---DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN-LKQL 1083 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~---~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-~~~l 1083 (1255)
-|+++|++++|++.. ++++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 246999999999999999999999999999999999999999999999999997654 3567
Q ss_pred hcceEEEccCCC--CCcccHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHH
Q 000846 1084 RSHIALVSQEPT--LFAGTIRENIAYGKA--DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQR 1155 (1255)
Q Consensus 1084 R~~i~~V~Qdp~--LF~gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQr 1155 (1255)
|++++||||+|. +|..|+.+|+.++.. ..+ ++++.++++..++.++... ...+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRH-----------APHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHH
Confidence 899999999984 777799999987621 112 2345556666666555433 346799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHH
Q 000846 1156 IALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1156 lalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl 1233 (1255)
++|||||+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999875 389999999999999889999999999999999999997
Q ss_pred hh
Q 000846 1234 AL 1235 (1255)
Q Consensus 1234 ~~ 1235 (1255)
+.
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 53
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=375.92 Aligned_cols=210 Identities=28% Similarity=0.450 Sum_probs=178.1
Q ss_pred cEEEEEEEEECCCCC-CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHH---H
Q 000846 1008 RIELKNVFFAYPTRP-DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ---L 1083 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~-~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---l 1083 (1255)
-++++||+++|+.+. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997422 146999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cceEEEccCCCCCcc-cHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHH
Q 000846 1084 R-SHIALVSQEPTLFAG-TIRENIAYGKA--DARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQR 1155 (1255)
Q Consensus 1084 R-~~i~~V~Qdp~LF~g-TIreNl~~g~~--~~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQr 1155 (1255)
| +.++|+||+|.+|.. |++||+.++.. .... +++.++++.. |++........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAV-----------GLEHRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHH
Confidence 3 679999999998875 99999976321 1122 2233333333 34444455567899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecC
Q 000846 1156 IALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGS 1228 (1255)
Q Consensus 1156 lalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~ 1228 (1255)
++||||++.+|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+..+|++++|++|++++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999874 4899999999999999999999999999998775
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=379.52 Aligned_cols=213 Identities=29% Similarity=0.466 Sum_probs=182.0
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCC---------
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN--------- 1079 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--------- 1079 (1255)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999963 46999999999999999999999999999999999999999999999999987653
Q ss_pred ----HHHHhcceEEEccCCCCCc-ccHHHHHhcCCC---CCCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCC
Q 000846 1080 ----LKQLRSHIALVSQEPTLFA-GTIRENIAYGKA---DARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQ 1147 (1255)
Q Consensus 1080 ----~~~lR~~i~~V~Qdp~LF~-gTIreNl~~g~~---~~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 1147 (1255)
...+|++++|++|++.+|. .|++||+.++.. .... +++.++++..+ ++........+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVG-----------LADKADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhHhhcChhh
Confidence 2467889999999999885 799999987421 1121 23333343333 33334455678
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEE
Q 000846 1148 LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQ-KSDTIAVIKNGRVV 1224 (1255)
Q Consensus 1148 LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~iv 1224 (1255)
||||||||++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+. .||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 789999999999985 49999999999999
Q ss_pred EecCHHHHHhh
Q 000846 1225 EQGSHNELVAL 1235 (1255)
Q Consensus 1225 e~G~~~eLl~~ 1235 (1255)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999999864
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=376.43 Aligned_cols=216 Identities=26% Similarity=0.472 Sum_probs=183.9
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHH-Hhcce
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ-LRSHI 1087 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~i 1087 (1255)
|+++||+++|++ +++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999963 36999999999999999999999999999999999999999999999999998877655 45789
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 000846 1088 ALVSQEPTLFAG-TIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILK 1164 (1255)
Q Consensus 1088 ~~V~Qdp~LF~g-TIreNl~~g~~--~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr 1164 (1255)
+|+||++.+|.+ |++||+.++.+ ....++.. ..+.+++..+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 99999986532 11222211 1233444443 55555566678899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000846 1165 NPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1165 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
+|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999999875 47899999999987755 99999999999999999999864
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=382.43 Aligned_cols=216 Identities=30% Similarity=0.548 Sum_probs=186.0
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++|++++|++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999632 34699999999999999999999999999999999999999999999999999888878889999
Q ss_pred EEEccCC--CCCcccHHHHHhcCCC--CCCHHH----HHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHH
Q 000846 1088 ALVSQEP--TLFAGTIRENIAYGKA--DARESE----IKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALA 1159 (1255)
Q Consensus 1088 ~~V~Qdp--~LF~gTIreNl~~g~~--~~~~~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalA 1159 (1255)
+|+||+| .++..|++||+.++.. ..+.++ +.++++..++.++ ......+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDY-----------LDKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCCcccCCHHHHHHHHHH
Confidence 9999998 4567899999987532 123332 3334444444333 3445578999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1160 RAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1160 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
|||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++++.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 4899999999999988999999999999999999998763
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=382.35 Aligned_cols=218 Identities=29% Similarity=0.487 Sum_probs=183.7
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCeecCC--CCH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDIRN--YNL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~ 1080 (1255)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 4999999999963 469999999999999999999999999999999999875 789999999999865 344
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC---CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHH
Q 000846 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKA---DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~---~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQk 1153 (1255)
..+|++++|+||++.+|.+|++||+.++.. ... ++.+.++++..++.+.+ .........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHHH
Confidence 567889999999999999999999986521 101 12334444444332111 1223455678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHH
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1154 QrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999877789999999999876 4999999999999999999999
Q ss_pred Hhh
Q 000846 1233 VAL 1235 (1255)
Q Consensus 1233 l~~ 1235 (1255)
+..
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 864
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=385.36 Aligned_cols=216 Identities=28% Similarity=0.493 Sum_probs=181.9
Q ss_pred EEEEEEEEECCCCC--CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCC---------
Q 000846 1009 IELKNVFFAYPTRP--DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRN--------- 1077 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~--~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~--------- 1077 (1255)
|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 88999999997431 1369999999999999999999999999999999999999999999999987632
Q ss_pred ---------------CCHHHHhcceEEEccCC--CCCcccHHHHHhcCCC--CCCHHH----HHHHHHHhcHHHHHHccc
Q 000846 1078 ---------------YNLKQLRSHIALVSQEP--TLFAGTIRENIAYGKA--DARESE----IKKAAVLANAHEFISGMK 1134 (1255)
Q Consensus 1078 ---------------i~~~~lR~~i~~V~Qdp--~LF~gTIreNl~~g~~--~~~~~e----i~~al~~a~l~~~i~~lp 1134 (1255)
.+...+|++||||||+| .+|..|++|||.++.. ..+.++ +.++++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~g--------- 153 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVG--------- 153 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcC---------
Confidence 13467889999999986 6888999999987632 233333 333333333
Q ss_pred cccc-cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-h
Q 000846 1135 DGYD-TYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQ-K 1211 (1255)
Q Consensus 1135 ~gld-t~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~ 1211 (1255)
++ ........+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+. .
T Consensus 154 --L~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 154 --LDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred --CChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 32 22345567899999999999999999999999999999999999999999999875 4899999999999874 5
Q ss_pred cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1212 SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1212 ~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
||||++|++|++++.|+++++.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998753
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=389.38 Aligned_cols=228 Identities=28% Similarity=0.415 Sum_probs=187.4
Q ss_pred cEEEEEEEEECCCCC----------CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCC
Q 000846 1008 RIELKNVFFAYPTRP----------DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRN 1077 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~----------~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1077 (1255)
-|+++|++++|+.+. ..++++||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999998
Q ss_pred CCHH---HHhcceEEEccCC--CCC-cccHHHHHhcCC----CCCCHHHHHHHHHHhcHHHHHHccccccc-cccCCCCC
Q 000846 1078 YNLK---QLRSHIALVSQEP--TLF-AGTIRENIAYGK----ADARESEIKKAAVLANAHEFISGMKDGYD-TYCGERGV 1146 (1255)
Q Consensus 1078 i~~~---~lR~~i~~V~Qdp--~LF-~gTIreNl~~g~----~~~~~~ei~~al~~a~l~~~i~~lp~gld-t~vge~G~ 1146 (1255)
++.. .+|++|+||+|+| .|| ..||.+||.++. +..+.++..+.++ +.++.+ |++ ........
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~-----~~l~~v--gl~~~~~~~~p~ 160 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVK-----AMMLKV--GLLPNLINRYPH 160 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHH-----HHHHHc--CCChHHhcCCcc
Confidence 8754 3678999999999 477 479999996531 1233333322211 222221 221 12344567
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 000846 1147 QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRV 1223 (1255)
Q Consensus 1147 ~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~i 1223 (1255)
+||||||||++|||||+.+|++||+||||++||+.+.+.|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999998753 7899999999999976 999999999999
Q ss_pred EEecCHHHHHhhhcCchhHH
Q 000846 1224 VEQGSHNELVALSRGGAYYS 1243 (1255)
Q Consensus 1224 ve~G~~~eLl~~~~~g~y~~ 1243 (1255)
+|.|+++++++. +...|.+
T Consensus 241 ve~g~~~~i~~~-~~~py~~ 259 (331)
T PRK15079 241 VELGTYDEVYHN-PLHPYTK 259 (331)
T ss_pred EEEcCHHHHHcC-CCCHHHH
Confidence 999999999875 4555655
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=380.29 Aligned_cols=218 Identities=31% Similarity=0.511 Sum_probs=184.2
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CCceEEECCeecCCC--CH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP-----LKGSVFMDEQDIRNY--NL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~ 1080 (1255)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 4699999999999999999999999999999999999985 799999999998653 24
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC--CCCHH----HHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHH
Q 000846 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKA--DARES----EIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQ 1154 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~~~~~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQ 1154 (1255)
..+|+.++|+||++.+|..|++||+.++.. ..+.+ ++.++++.+++.+.+ +.........|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHH
Confidence 567889999999999999999999986521 12222 234444444432211 12233456789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHH
Q 000846 1155 RIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1155 rlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl 1233 (1255)
|++|||||+.+|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999998778999999999999865 9999999999999999999997
Q ss_pred hh
Q 000846 1234 AL 1235 (1255)
Q Consensus 1234 ~~ 1235 (1255)
..
T Consensus 242 ~~ 243 (258)
T PRK14268 242 HN 243 (258)
T ss_pred cC
Confidence 64
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=381.07 Aligned_cols=222 Identities=31% Similarity=0.520 Sum_probs=186.2
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCeecCCCC--HH
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDIRNYN--LK 1081 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~i~--~~ 1081 (1255)
=+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999963 469999999999999999999999999999999999986 47999999999987653 34
Q ss_pred HHhcceEEEccCCCCCcccHHHHHhcCCC--CC------CHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHH
Q 000846 1082 QLRSHIALVSQEPTLFAGTIRENIAYGKA--DA------RESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1082 ~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~~------~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQk 1153 (1255)
.+|++++||||++.+|.+|++||+.++.. +. .++++.++++..++.+++ .+.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHH
Confidence 67889999999999999999999986521 11 123344445555443321 1234455678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1154 QrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred HhhhcCchh
Q 000846 1233 VALSRGGAY 1241 (1255)
Q Consensus 1233 l~~~~~g~y 1241 (1255)
++. +...|
T Consensus 236 ~~~-~~~~~ 243 (251)
T PRK14244 236 FKN-PQSSK 243 (251)
T ss_pred hcC-CCChH
Confidence 875 44444
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=382.47 Aligned_cols=216 Identities=27% Similarity=0.497 Sum_probs=188.0
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCC---ceEEECCeecCCCCHHHH
Q 000846 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLK---GSVFMDEQDIRNYNLKQL 1083 (1255)
Q Consensus 1007 g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~---G~I~idG~di~~i~~~~l 1083 (1255)
+.|+++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.+||.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 359999999999642 2469999999999999999999999999999999999999988 899999999988777788
Q ss_pred hcceEEEccCC--CCCcccHHHHHhcCCC--CCCHH----HHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHH
Q 000846 1084 RSHIALVSQEP--TLFAGTIRENIAYGKA--DARES----EIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQR 1155 (1255)
Q Consensus 1084 R~~i~~V~Qdp--~LF~gTIreNl~~g~~--~~~~~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQr 1155 (1255)
|++|+||||+| .+++.|++|||.++.. ..+.+ ++.++++..++.++. .....+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYI-----------DSEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHh-----------cCCcccCCHHHHHH
Confidence 99999999998 4678899999987632 22332 344555555555443 33446899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHH
Q 000846 1156 IALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1156 lalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl 1233 (1255)
++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|++++++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999998753 78999999999999889999999999999999999987
Q ss_pred h
Q 000846 1234 A 1234 (1255)
Q Consensus 1234 ~ 1234 (1255)
.
T Consensus 232 ~ 232 (282)
T PRK13640 232 S 232 (282)
T ss_pred c
Confidence 5
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=395.74 Aligned_cols=217 Identities=29% Similarity=0.513 Sum_probs=184.7
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .+++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 3899999999963 459999999999999999999999999999999999999999999999999987665 35789
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHH
Q 000846 1088 ALVSQEPTLFA-GTIRENIAYGKA--DARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALAR 1160 (1255)
Q Consensus 1088 ~~V~Qdp~LF~-gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalAR 1160 (1255)
+||||++.+|. .|++||+.++.. ..+. +++.++++..++.++ ......+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-----------~~~~~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHL-----------LDRKPKALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHH
Confidence 99999999996 499999987632 1222 234445555444433 33345689999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhhhc
Q 000846 1161 AILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVALSR 1237 (1255)
Q Consensus 1161 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~~~ 1237 (1255)
||+++|+|||||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++... +
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~-p 225 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY-P 225 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-c
Confidence 99999999999999999999999999999998753 7899999999998764 999999999999999999999874 4
Q ss_pred Cchh
Q 000846 1238 GGAY 1241 (1255)
Q Consensus 1238 ~g~y 1241 (1255)
...|
T Consensus 226 ~~~~ 229 (369)
T PRK11000 226 ANRF 229 (369)
T ss_pred ccHH
Confidence 4333
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=379.40 Aligned_cols=218 Identities=34% Similarity=0.554 Sum_probs=183.8
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCeecCC--CCH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDIRN--YNL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~ 1080 (1255)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 3899999999963 369999999999999999999999999999999999997 479999999999864 345
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC--CCC-----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHH
Q 000846 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKA--DAR-----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~~~-----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQk 1153 (1255)
..+|+.++|++|++.+|+.|++||+.++.. ... ++++.++++..+++... + ........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~----~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---K----DNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---H----HHhccChhhCCHHHH
Confidence 667889999999999999999999986532 111 12334444444442110 1 112345678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1154 QrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
||++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred Hhh
Q 000846 1233 VAL 1235 (1255)
Q Consensus 1233 l~~ 1235 (1255)
...
T Consensus 234 ~~~ 236 (251)
T PRK14251 234 FIA 236 (251)
T ss_pred HhC
Confidence 764
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=369.47 Aligned_cols=199 Identities=30% Similarity=0.521 Sum_probs=171.8
Q ss_pred EEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceEE
Q 000846 1010 ELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIAL 1089 (1255)
Q Consensus 1010 ~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~ 1089 (1255)
+++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ...|++|+|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999631 469999999999999999999999999999999999999999999999999864 456789999
Q ss_pred EccCC--CCCcccHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 000846 1090 VSQEP--TLFAGTIRENIAYGKADA--RESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKN 1165 (1255)
Q Consensus 1090 V~Qdp--~LF~gTIreNl~~g~~~~--~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~ 1165 (1255)
+||+| .+|..|++||+.++.+.. .++++.++++..++.++... ....||||||||++|||||+++
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKER-----------HPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCC-----------CchhCCHHHHHHHHHHHHHHhC
Confidence 99998 467899999998764322 23456666666666554333 3357999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEE
Q 000846 1166 PSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVV 1224 (1255)
Q Consensus 1166 p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~iv 1224 (1255)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999874 57899999999999875 9999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=384.23 Aligned_cols=219 Identities=26% Similarity=0.510 Sum_probs=184.5
Q ss_pred EEEEeEEEEcCCCC--CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCC----CCHHH
Q 000846 345 IEFRDVYFCYPSRP--DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRR----LHLKW 418 (1255)
Q Consensus 345 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~----~~~~~ 418 (1255)
|+++||+|+|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997421 1359999999999999999999999999999999999999999999999999863 33567
Q ss_pred HhcccEEeccCC--ccCcccHHHHhccCCCC--CCHHHHHHHHHHhchHHHHhcCCCccc-chhcCCCCCCChHHHHHHH
Q 000846 419 LRSQMGLVNQEP--VLFATSITENILFGKDG--ASMDDVISAAKAANAHDFITKLPDGYE-TQVGQLGFQMSGGQKQRIA 493 (1255)
Q Consensus 419 ~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqrqri~ 493 (1255)
+|+.++||+|+| .+|..||.||+.|+... .+.++..+ .+.+.++.+ |++ ........+||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK-----IAAEKLEMV--GLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence 888999999998 78889999999987432 22222221 112333333 443 2446677899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 494 IARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 494 lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+. .||+|++|++|+++++|+++++..
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999999999999998875 4899999999999885 599999999999999999999865
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=378.60 Aligned_cols=218 Identities=28% Similarity=0.475 Sum_probs=183.8
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC--C---CCceEEECCeecCCC--CH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD--P---LKGSVFMDEQDIRNY--NL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--p---~~G~I~idG~di~~i--~~ 1080 (1255)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 369999999999999999999999999999999999954 6 499999999998643 34
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC--CC-C----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHH
Q 000846 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKA--DA-R----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~~-~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQk 1153 (1255)
..+|++++||||+|.+|+.|++||+.++.. .. . ++++.++++..++.+.+ .+.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-------KDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-------HHHHhcCcccCCHHHH
Confidence 567889999999999999999999986421 11 1 22333444444443222 2234556678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1154 QrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999998865 999999999999999999999
Q ss_pred Hhh
Q 000846 1233 VAL 1235 (1255)
Q Consensus 1233 l~~ 1235 (1255)
++.
T Consensus 235 ~~~ 237 (252)
T PRK14239 235 FMN 237 (252)
T ss_pred HhC
Confidence 864
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=391.89 Aligned_cols=217 Identities=29% Similarity=0.493 Sum_probs=184.6
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+. .+++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 4889999999974 359999999999999999999999999999999999999999999999999977654 35689
Q ss_pred EEeccCCccCcc-cHHHHhccCCCC------CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHH
Q 000846 424 GLVNQEPVLFAT-SITENILFGKDG------ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIAR 496 (1255)
Q Consensus 424 ~~v~Q~~~l~~~-ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lAR 496 (1255)
+||+|++.+|+. |++||+.|+... .+.++.. ..+.+.++.+ |++........+||||||||++|||
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAr 149 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIK-----AKVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALAR 149 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 999999999975 999999987431 1112111 1122334443 4544556667899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhccC
Q 000846 497 ALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNRG 572 (1255)
Q Consensus 497 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~ 572 (1255)
||+.+|++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++.+. .||+|++|++|++++.|+++++..++
T Consensus 150 AL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p 228 (353)
T PRK10851 150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP 228 (353)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999998754 789999999999875 59999999999999999999998754
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=382.17 Aligned_cols=214 Identities=28% Similarity=0.505 Sum_probs=185.5
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
++++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...++++++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 35999999999999999999999999999999999999999999999999998877788899999
Q ss_pred EEccCC--CCCcccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHH
Q 000846 1089 LVSQEP--TLFAGTIRENIAYGKA--DARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALAR 1160 (1255)
Q Consensus 1089 ~V~Qdp--~LF~gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalAR 1160 (1255)
||||+| .+|+.|++||+.++.. ..+. +.+.++++..++.++. ......||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELR-----------DRVPHHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCCcccCCHHHHHHHHHHH
Confidence 999998 4788999999986532 2222 2344555555554443 2334689999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1161 AILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1161 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
||+.+|++|||||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+. .||||++|++|++++.|+++++++.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999998753 799999999999985 5999999999999999999999753
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=377.91 Aligned_cols=219 Identities=35% Similarity=0.565 Sum_probs=185.8
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CCceEEECCeecCC--CC
Q 000846 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP-----LKGSVFMDEQDIRN--YN 1079 (1255)
Q Consensus 1007 g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~ 1079 (1255)
|.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46999999999963 3699999999999999999999999999999999999863 69999999999875 45
Q ss_pred HHHHhcceEEEccCCCCCcccHHHHHhcCCC--CC-----CHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHH
Q 000846 1080 LKQLRSHIALVSQEPTLFAGTIRENIAYGKA--DA-----RESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQ 1152 (1255)
Q Consensus 1080 ~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~~-----~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 1152 (1255)
...+|++++|+||+|.+|+.|++||+.++.. .. .++++.++++.+++.+.+ .......+.+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEV-------KDRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------HHHHhcCCCCCCHHH
Confidence 5678999999999999999999999987521 11 123344444444443222 222345567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHH
Q 000846 1153 KQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNE 1231 (1255)
Q Consensus 1153 kQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~e 1231 (1255)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999998865 99999999999999999999
Q ss_pred HHhh
Q 000846 1232 LVAL 1235 (1255)
Q Consensus 1232 Ll~~ 1235 (1255)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 9764
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=392.51 Aligned_cols=218 Identities=28% Similarity=0.457 Sum_probs=186.8
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCc--cEEEECCeecCCCCHHHHh
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVE--GEVLLDGYKIRRLHLKWLR 420 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~--G~i~~~g~~~~~~~~~~~r 420 (1255)
+.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.+.++ .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 57999999999973 359999999999999999999999999999999999999999 999999999977655 35
Q ss_pred cccEEeccCCccCcc-cHHHHhccCCCC--CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHH
Q 000846 421 SQMGLVNQEPVLFAT-SITENILFGKDG--ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARA 497 (1255)
Q Consensus 421 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARa 497 (1255)
+.|+||+|++.+|.. ||+|||.|+... ...++..+ .+.+.++.+ |++........+|||||||||+||||
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLARA 151 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKLV--GLGDAAAHLPAQLSGGMQQRIAIARA 151 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCCchhhCChhhCCHHHHHHHHHHHH
Confidence 689999999999976 999999986431 12222211 123334444 55555666778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhccC
Q 000846 498 LIRDPKILLLDEATSALDAQSERIVQEAIDKVSK---GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNRG 572 (1255)
Q Consensus 498 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~---~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~ 572 (1255)
|+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+. .||+|++|++|++++.|+++++..++
T Consensus 152 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 152 IAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999999988753 789999999999975 59999999999999999999998753
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=377.57 Aligned_cols=220 Identities=26% Similarity=0.493 Sum_probs=185.7
Q ss_pred cccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC--C---CCceEEECCeecCCC--
Q 000846 1006 RGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD--P---LKGSVFMDEQDIRNY-- 1078 (1255)
Q Consensus 1006 ~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--p---~~G~I~idG~di~~i-- 1078 (1255)
+|.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++...
T Consensus 2 ~~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 2 NNKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred CcEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 356999999999963 469999999999999999999999999999999999986 4 689999999998653
Q ss_pred CHHHHhcceEEEccCCCCCc-ccHHHHHhcCCC--C-CC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCCh
Q 000846 1079 NLKQLRSHIALVSQEPTLFA-GTIRENIAYGKA--D-AR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSG 1150 (1255)
Q Consensus 1079 ~~~~lR~~i~~V~Qdp~LF~-gTIreNl~~g~~--~-~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 1150 (1255)
+...+|++|+|+||++.+|. .|++||+.++.. . .+ ++++.++++..++.+++. ...+..+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 151 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSG 151 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCH
Confidence 34567899999999999988 599999976421 1 11 123444444555433322 123345678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCH
Q 000846 1151 GQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSH 1229 (1255)
Q Consensus 1151 GQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~ 1229 (1255)
|||||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998778999999999999854 999999999999999999
Q ss_pred HHHHhh
Q 000846 1230 NELVAL 1235 (1255)
Q Consensus 1230 ~eLl~~ 1235 (1255)
+++...
T Consensus 232 ~~~~~~ 237 (252)
T PRK14256 232 KKIFTT 237 (252)
T ss_pred HHHHhC
Confidence 999864
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=380.00 Aligned_cols=219 Identities=30% Similarity=0.478 Sum_probs=187.8
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCeecCC--CC
Q 000846 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDIRN--YN 1079 (1255)
Q Consensus 1007 g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~ 1079 (1255)
..|+++||+++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 35999999999953 469999999999999999999999999999999999997 589999999999864 34
Q ss_pred HHHHhcceEEEccCCCCCcccHHHHHhcCCC--CC-C----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHH
Q 000846 1080 LKQLRSHIALVSQEPTLFAGTIRENIAYGKA--DA-R----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQ 1152 (1255)
Q Consensus 1080 ~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~~-~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 1152 (1255)
...+|+.|+||||++.+|..|++||+.++.. .. + ++++.++++..++.+++ +...+..+.+|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHH
Confidence 5678999999999999999999999987532 11 1 23344455555544333 233456678899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHH
Q 000846 1153 KQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNE 1231 (1255)
Q Consensus 1153 kQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~e 1231 (1255)
|||++||||++++|++|||||||++||+.+...+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999998854 99999999999999999999
Q ss_pred HHhh
Q 000846 1232 LVAL 1235 (1255)
Q Consensus 1232 Ll~~ 1235 (1255)
+.+.
T Consensus 249 ~~~~ 252 (267)
T PRK14237 249 IFTN 252 (267)
T ss_pred HhcC
Confidence 9763
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=364.26 Aligned_cols=204 Identities=36% Similarity=0.586 Sum_probs=180.4
Q ss_pred cceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhc
Q 000846 342 RGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRS 421 (1255)
Q Consensus 342 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 421 (1255)
.+.++++|++++|+.. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 4679999999999742 236999999999999999999999999999999999999999999999999998888778889
Q ss_pred ccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccC
Q 000846 422 QMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501 (1255)
Q Consensus 422 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~ 501 (1255)
+|+||+|+|.+|++|++||+.+... ...+++.++++ +++.+.+||||||||++||||++.+
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999976432 23333332221 3456789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecCh
Q 000846 502 PKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSH 565 (1255)
Q Consensus 502 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~ 565 (1255)
|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999988778999999999999877999999999999988764
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=370.43 Aligned_cols=207 Identities=25% Similarity=0.469 Sum_probs=175.6
Q ss_pred EEEEEEEEECCCCCC-CccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1009 IELKNVFFAYPTRPD-QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~-~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
|+++||+++|+.+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999974311 269999999999999999999999999999999999999999999999999976 456778999
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHH
Q 000846 1088 ALVSQEPTLFAG-TIRENIAYGKA--DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALAR 1160 (1255)
Q Consensus 1088 ~~V~Qdp~LF~g-TIreNl~~g~~--~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalAR 1160 (1255)
+|+||+|.+|.+ |++||+.+... ..+ ++++.++++..++ +........+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGM-----------EELLDRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------HHHHhhhhhhcCHHHHHHHHHHH
Confidence 999999999985 99999975421 112 2233444444444 33344456789999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000846 1161 AILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227 (1255)
Q Consensus 1161 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1227 (1255)
|++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999875 48999999999998865 9999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=374.16 Aligned_cols=217 Identities=31% Similarity=0.511 Sum_probs=183.3
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCC--CHHHHhcc
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNY--NLKQLRSH 1086 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i--~~~~lR~~ 1086 (1255)
|+++|++++|++ .++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999963 4699999999999999999999999999999999999999999999999998764 34567889
Q ss_pred eEEEccCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHH
Q 000846 1087 IALVSQEPTLFA-GTIRENIAYGKA---DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAI 1162 (1255)
Q Consensus 1087 i~~V~Qdp~LF~-gTIreNl~~g~~---~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARAL 1162 (1255)
++|+||++.+|. .|++||+.++.. ..+.++..+ .+.+.++.+ |++.........||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999998886 699999987531 112222111 122333333 444444555678999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1163 LKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1163 lr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
+++|+||||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999999875 47999999999999865 999999999999999999999764
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=369.23 Aligned_cols=203 Identities=27% Similarity=0.487 Sum_probs=175.9
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++||+++|++ .++|+|+||++++| ++||+||||||||||+++|.|+++|++|+|.+||.++...+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999963 36999999999999 99999999999999999999999999999999999998776 67899999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHH
Q 000846 1089 LVSQEPTLFAG-TIRENIAYGKA--DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161 (1255)
Q Consensus 1089 ~V~Qdp~LF~g-TIreNl~~g~~--~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARA 1161 (1255)
|+||+|.+|.+ |++||+.+... ..+ ++++.++++..++.++ +++ ...+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~----~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDR-------AKK----KIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHH-------HhC----chhhCCHHHHHHHHHHHH
Confidence 99999999886 99999976321 111 2345555555555443 233 345799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000846 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227 (1255)
Q Consensus 1162 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1227 (1255)
++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999998777999999999999865 9999999999999875
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=376.12 Aligned_cols=227 Identities=29% Similarity=0.533 Sum_probs=189.6
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCC-----CceEEECCeecCC--CCH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL-----KGSVFMDEQDIRN--YNL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--i~~ 1080 (1255)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 46999999999999999999999999999999999999997 6999999999864 345
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC--CC-C----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHH
Q 000846 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKA--DA-R----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~~-~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQk 1153 (1255)
..+|+.++||||+|.+|+.|++||+.++.. .. . ++.+.++++..++.+++ +......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHH
Confidence 678999999999999999999999987531 11 1 12333344444444332 2234566788999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1154 QrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988678999999999999876 799999999999999999999
Q ss_pred HhhhcCchhHHH
Q 000846 1233 VALSRGGAYYSL 1244 (1255)
Q Consensus 1233 l~~~~~g~y~~l 1244 (1255)
........++.+
T Consensus 234 ~~~~~~~~~~~~ 245 (251)
T PRK14249 234 FSRPRDKRTEDY 245 (251)
T ss_pred HhCCCChHHHHH
Confidence 764223334443
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=378.46 Aligned_cols=215 Identities=30% Similarity=0.496 Sum_probs=182.8
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCC--------
Q 000846 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNY-------- 1078 (1255)
Q Consensus 1007 g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i-------- 1078 (1255)
+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 56999999999963 4699999999999999999999999999999999999999999999999998642
Q ss_pred -----CHHHHhcceEEEccCCCCCc-ccHHHHHhcCCC---CCCH----HHHHHHHHHhcHHHHHHcccccccccc-CCC
Q 000846 1079 -----NLKQLRSHIALVSQEPTLFA-GTIRENIAYGKA---DARE----SEIKKAAVLANAHEFISGMKDGYDTYC-GER 1144 (1255)
Q Consensus 1079 -----~~~~lR~~i~~V~Qdp~LF~-gTIreNl~~g~~---~~~~----~ei~~al~~a~l~~~i~~lp~gldt~v-ge~ 1144 (1255)
....+|++++||||++.+|. .|++||+.++.. .... +++.++++..+ ++... ...
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~ 149 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVG-----------IDERAQGKY 149 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CChhhhhCC
Confidence 13567889999999999997 499999976421 1111 22333333333 33322 455
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCE
Q 000846 1145 GVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGR 1222 (1255)
Q Consensus 1145 G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ 1222 (1255)
..+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||||++|++|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 67899999999999999999999999999999999999999999999875 48999999999999986 99999999999
Q ss_pred EEEecCHHHHHhh
Q 000846 1223 VVEQGSHNELVAL 1235 (1255)
Q Consensus 1223 ive~G~~~eLl~~ 1235 (1255)
+++.|+++++++.
T Consensus 230 i~~~~~~~~~~~~ 242 (257)
T PRK10619 230 IEEEGAPEQLFGN 242 (257)
T ss_pred EEEeCCHHHhhhC
Confidence 9999999999864
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=379.22 Aligned_cols=218 Identities=32% Similarity=0.489 Sum_probs=184.6
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC--C---CCceEEECCeecCC--CCH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD--P---LKGSVFMDEQDIRN--YNL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--p---~~G~I~idG~di~~--i~~ 1080 (1255)
-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 369999999999999999999999999999999999997 3 58999999999864 445
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC--C-CCHH----HHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHH
Q 000846 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKA--D-ARES----EIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~-~~~~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQk 1153 (1255)
..+|++++|+||++.+|.+|++||+.++.. . .+++ ++.++++..++.+++. ......+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 678899999999999999999999976521 1 1222 2333344444433221 223456678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1154 QrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred Hhh
Q 000846 1233 VAL 1235 (1255)
Q Consensus 1233 l~~ 1235 (1255)
+++
T Consensus 242 ~~~ 244 (259)
T PRK14274 242 FSN 244 (259)
T ss_pred hhC
Confidence 864
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=378.44 Aligned_cols=217 Identities=34% Similarity=0.534 Sum_probs=182.7
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCC--------H
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN--------L 1080 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--------~ 1080 (1255)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999963 36999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhcceEEEccCCCCCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHH
Q 000846 1081 KQLRSHIALVSQEPTLFA-GTIRENIAYGK---ADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRI 1156 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~-gTIreNl~~g~---~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrl 1156 (1255)
..+|++++||||++.+|. .|++||+.++. .....++..+ .+.++++.+ |++........+||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKV--GLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence 567889999999999886 69999997642 1112222211 122333333 444444556788999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000846 1157 ALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1157 alARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
+|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999875 48899999999999865 99999999999999999999976
Q ss_pred h
Q 000846 1235 L 1235 (1255)
Q Consensus 1235 ~ 1235 (1255)
.
T Consensus 234 ~ 234 (250)
T PRK11264 234 D 234 (250)
T ss_pred C
Confidence 4
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=374.31 Aligned_cols=218 Identities=26% Similarity=0.417 Sum_probs=181.6
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHH-Hhcc
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ-LRSH 1086 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~ 1086 (1255)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... +|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 3899999999963 46999999999999999999999999999999999999999999999999998887654 6788
Q ss_pred eEEEccCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 000846 1087 IALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKN 1165 (1255)
Q Consensus 1087 i~~V~Qdp~LF~g-TIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~ 1165 (1255)
++|+||++.+|.+ |++||+.++....+.++..+.+ .+++..++ +++.........||||||||++||||++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999985 9999998754222222222211 11222221 111112334568999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHHh
Q 000846 1166 PSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1166 p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
|+||||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999999875 4899999999999765 599999999999999999999974
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=360.68 Aligned_cols=227 Identities=32% Similarity=0.532 Sum_probs=194.9
Q ss_pred eEEEEeEEEEcCCCCC---------------------CccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCcc
Q 000846 344 EIEFRDVYFCYPSRPD---------------------TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~---------------------~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G 402 (1255)
.|+++||++-|+.++. ..-++|+||+|+.||+..|.|-||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 5889999998875421 1248999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHH----hcccEEeccCCccCcc-cHHHHhccCCCC------CCHHHHHHHHHHhchHHHHhcCCC
Q 000846 403 EVLLDGYKIRRLHLKWL----RSQMGLVNQEPVLFAT-SITENILFGKDG------ASMDDVISAAKAANAHDFITKLPD 471 (1255)
Q Consensus 403 ~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~ 471 (1255)
+|.+||.|+..++.++| |+++++|+|+..|++- ||.||..||.+- .+.+...++++.++++++-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 99999999999987765 3589999999999976 999999999751 12334556666777766666655
Q ss_pred cccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhh-hhc
Q 000846 472 GYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTI-RTA 548 (1255)
Q Consensus 472 g~~t~~~~~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~-~~~ 548 (1255)
.+||||+||||.|||||..+|+||++|||+|||||--+..+|+.|.++.+ +||+|+|||++++. +..
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 58999999999999999999999999999999999999999999988754 79999999999986 679
Q ss_pred CEEEEEeCCEEEEecChhHHhccCCCChhHHHH
Q 000846 549 NLIMVLKAGKVVESGSHNELMNRGEGGEYYQMV 581 (1255)
Q Consensus 549 d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 581 (1255)
|||..|++|+|+..|+|+|++.++.+.+-..++
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv 265 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVRDFV 265 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHHHHH
Confidence 999999999999999999999876554444444
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=380.23 Aligned_cols=220 Identities=32% Similarity=0.532 Sum_probs=188.3
Q ss_pred cccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CCceEEECCeecCC--C
Q 000846 1006 RGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP-----LKGSVFMDEQDIRN--Y 1078 (1255)
Q Consensus 1006 ~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i 1078 (1255)
.+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999963 3699999999999999999999999999999999999984 89999999999875 3
Q ss_pred CHHHHhcceEEEccCCCCCcccHHHHHhcCCC--CC-C----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChH
Q 000846 1079 NLKQLRSHIALVSQEPTLFAGTIRENIAYGKA--DA-R----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGG 1151 (1255)
Q Consensus 1079 ~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~~-~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 1151 (1255)
+...+|++++|+||++.+|.+|++||+.++.. .. . ++++.++++..++.+.+. +..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 45678999999999999999999999976521 11 1 233455555555543322 2345667889999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHH
Q 000846 1152 QKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHN 1230 (1255)
Q Consensus 1152 QkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~ 1230 (1255)
||||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999998778999999999999864 9999999999999999999
Q ss_pred HHHhh
Q 000846 1231 ELVAL 1235 (1255)
Q Consensus 1231 eLl~~ 1235 (1255)
++.+.
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 99764
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=394.35 Aligned_cols=209 Identities=35% Similarity=0.542 Sum_probs=176.5
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHH----hcceEEEccCCCCCc-c
Q 000846 1025 MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL----RSHIALVSQEPTLFA-G 1099 (1255)
Q Consensus 1025 ~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l----R~~i~~V~Qdp~LF~-g 1099 (1255)
.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+...+ |++|+||||++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998876554 468999999999996 5
Q ss_pred cHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEec
Q 000846 1100 TIRENIAYGKA--DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDE 1173 (1255)
Q Consensus 1100 TIreNl~~g~~--~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILlLDE 1173 (1255)
|++||+.++.. ..+ ++++.++++..++.++. .....+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~-----------~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYA-----------HSYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999987531 112 23444555555554433 33446899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhhhcCchh-HHHH
Q 000846 1174 ATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVALSRGGAY-YSLI 1245 (1255)
Q Consensus 1174 aTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y-~~l~ 1245 (1255)
|||+||+.+.+.+++.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++.. +...| +.++
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~-~~~~~v~~~~ 265 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN-PANDYVRTFF 265 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC-cccHHHHHHH
Confidence 999999999999999999874 48999999999999854 999999999999999999999875 33333 3444
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=375.34 Aligned_cols=216 Identities=29% Similarity=0.505 Sum_probs=182.7
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV 76 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce
Confidence 3789999999974 459999999999999999999999999999999999999999999999999876543 25689
Q ss_pred EEeccCCccCc-ccHHHHhccCCCCC------CHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHH
Q 000846 424 GLVNQEPVLFA-TSITENILFGKDGA------SMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIAR 496 (1255)
Q Consensus 424 ~~v~Q~~~l~~-~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lAR 496 (1255)
+|++|+|.+|. .|++||+.++.... ...+.. ..+.+.++.+ |++........+||||||||++|||
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~ 149 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-----AKVHELLKLV--QLDWLADRYPAQLSGGQRQRVALAR 149 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 99999999986 59999998764211 111111 1223444444 5555566677899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhcc
Q 000846 497 ALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 497 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
||+.+|++|||||||++||+++++.+.+.|+++.+ |+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 150 ALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 99999999999999999999999999999998743 789999999999875 5999999999999999999998754
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=380.94 Aligned_cols=219 Identities=29% Similarity=0.517 Sum_probs=185.5
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCeecCC--CC
Q 000846 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDIRN--YN 1079 (1255)
Q Consensus 1007 g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~ 1079 (1255)
..|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 45999999999963 469999999999999999999999999999999999997 689999999999864 34
Q ss_pred HHHHhcceEEEccCCCCCcccHHHHHhcCCC-----CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHH
Q 000846 1080 LKQLRSHIALVSQEPTLFAGTIRENIAYGKA-----DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQ 1154 (1255)
Q Consensus 1080 ~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~-----~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQ 1154 (1255)
...+|++++||||++.+|..|++||+.++.. ...++++.++++..++...+. ........+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHH
Confidence 5678899999999999998999999976421 112334555555555432221 1234556789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEE-EEeCCEEEEecCHHHH
Q 000846 1155 RIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIA-VIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1155 rlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~-Vl~~G~ive~G~~~eL 1232 (1255)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999876 99975 5699999999999999
Q ss_pred Hhh
Q 000846 1233 VAL 1235 (1255)
Q Consensus 1233 l~~ 1235 (1255)
.+.
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 764
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=374.47 Aligned_cols=212 Identities=31% Similarity=0.499 Sum_probs=180.0
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHH-Hhcce
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ-LRSHI 1087 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~i 1087 (1255)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999963 36999999999999999999999999999999999999999999999999998877654 46789
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCCC--CHHHH-HHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHc
Q 000846 1088 ALVSQEPTLFAG-TIRENIAYGKADA--RESEI-KKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAIL 1163 (1255)
Q Consensus 1088 ~~V~Qdp~LF~g-TIreNl~~g~~~~--~~~ei-~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALl 1163 (1255)
+|+||++.+|.. |++||+.++.... ..++. .++++..+ +++........+||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 9999998653211 11111 12222111 2233344556789999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHH
Q 000846 1164 KNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1164 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl 1233 (1255)
++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999999998764 7899999999999985 9999999999999999999983
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=386.26 Aligned_cols=217 Identities=28% Similarity=0.485 Sum_probs=182.3
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999963 46999999999999999999999999999999999999999999999999997754 4578999
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 000846 1088 ALVSQEPTLFA-GTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILK 1164 (1255)
Q Consensus 1088 ~~V~Qdp~LF~-gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr 1164 (1255)
|||||++.+|. .|++||+.+... ..+..+..+.+ ..+.+++ .+++..++.+ .+||||||||++|||||+.
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~~~~~~----~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALV--PPLLEFA-KLENKADAKV----GELSGGMKRRLTLARALVN 155 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHc-CCchHhcCch----hhCCHHHHHHHHHHHHHhC
Confidence 99999999886 699999975321 12222222211 1111111 2333455554 4799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1165 NPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1165 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
+|++|+|||||++||+.+.+.+++.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999975 47999999999999965 999999999999999999999754
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=372.86 Aligned_cols=216 Identities=32% Similarity=0.557 Sum_probs=185.8
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCccc-chhcCCCCCCChHHHHHHHHHHHhccCC
Q 000846 424 GLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYE-TQVGQLGFQMSGGQKQRIAIARALIRDP 502 (1255)
Q Consensus 424 ~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqrqri~lARal~~~~ 502 (1255)
+|++|++.+|+.|++||+.++.......+ ..+.+.++.+ |++ ........+||||||||++||||++++|
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~-------~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKN-------VDVEYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHH-------HHHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999998999999987532111110 1122334443 443 2445667899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhcc
Q 000846 503 KILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 503 ~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999874 3899999999999986 5999999999999999999998764
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=357.65 Aligned_cols=178 Identities=38% Similarity=0.684 Sum_probs=166.6
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++|++++|+.+ +.++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999743 23699999999999999999999999999999999999999999999999998776 667889999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 000846 1089 LVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSI 1168 (1255)
Q Consensus 1089 ~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~I 1168 (1255)
|+||+|.+|+.|++||+ ..+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 457999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEec
Q 000846 1169 LLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQG 1227 (1255)
Q Consensus 1169 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G 1227 (1255)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887789999999999999889999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=361.76 Aligned_cols=217 Identities=31% Similarity=0.475 Sum_probs=185.2
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCe---ecCCCCHHHHh
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQ---DIRNYNLKQLR 1084 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~---di~~i~~~~lR 1084 (1255)
.|+++|++..|+. .++++|||++|+.||.+|+.||||||||||++++.|+..|++|+|.+||. |.++.+. -.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~--~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAV--RD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccch--hh
Confidence 3788999999963 46899999999999999999999999999999999999999999999999 7777443 34
Q ss_pred cceEEEccCCCCCc-ccHHHHHhcCCC----CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHH
Q 000846 1085 SHIALVSQEPTLFA-GTIRENIAYGKA----DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQR 1155 (1255)
Q Consensus 1085 ~~i~~V~Qdp~LF~-gTIreNl~~g~~----~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQr 1155 (1255)
++||+|+||..||. .||++||+||.. ..+ ...+.+-++.+++..+-+. ...+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~r-----------yP~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR-----------YPAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhc-----------CchhcChHHHHH
Confidence 78999999999886 699999999963 112 2344444555555444332 357899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHH
Q 000846 1156 IALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1156 lalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
+||||||...|++|+||||.++||..-.+.+++-|++... +.|+++|||+.+.+. -||||+||++|+|...|+|+|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999998753 899999999999875 5999999999999999999999
Q ss_pred HhhhcCchh
Q 000846 1233 VALSRGGAY 1241 (1255)
Q Consensus 1233 l~~~~~g~y 1241 (1255)
... +++.|
T Consensus 226 ~~~-P~s~f 233 (345)
T COG1118 226 YDH-PASRF 233 (345)
T ss_pred hcC-CCccc
Confidence 875 56554
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=370.08 Aligned_cols=209 Identities=27% Similarity=0.456 Sum_probs=178.5
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++|++++|++ .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999963 4699999999999999999999999999999999999999999999999998763 356788999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHH
Q 000846 1089 LVSQEPTLFAG-TIRENIAYGKA--DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161 (1255)
Q Consensus 1089 ~V~Qdp~LF~g-TIreNl~~g~~--~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARA 1161 (1255)
|+||++.+|.. |++||+.++.. ..+ ++++.++++..++.++.. ....+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-----------RLVKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHH
Confidence 99999998875 99999976411 111 234455555555544332 2345799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1162 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
++.+|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999998753 7899999999999865 999999999999999998875
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=382.12 Aligned_cols=220 Identities=32% Similarity=0.580 Sum_probs=187.5
Q ss_pred eEEEEeEEEEcCCCC--CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCC----CHH
Q 000846 344 EIEFRDVYFCYPSRP--DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL----HLK 417 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~ 417 (1255)
.|+++||+|+|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 388999999996422 24699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhcccEEeccCC--ccCcccHHHHhccCCCC--CCHHHHHHHHHHhchHHHHhcCCCcccc-hhcCCCCCCChHHHHHH
Q 000846 418 WLRSQMGLVNQEP--VLFATSITENILFGKDG--ASMDDVISAAKAANAHDFITKLPDGYET-QVGQLGFQMSGGQKQRI 492 (1255)
Q Consensus 418 ~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqrqri 492 (1255)
.+|++||||+|+| .+|..|++|||.++... .+.++..+ .+.+.+..+ |+++ .....+.+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKN-----YAHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 6888999999998 58888999999986321 22222222 123455555 7763 45677899999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHh
Q 000846 493 AIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELM 569 (1255)
Q Consensus 493 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~ 569 (1255)
+|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999874 4899999999999885 69999999999999999999986
Q ss_pred c
Q 000846 570 N 570 (1255)
Q Consensus 570 ~ 570 (1255)
+
T Consensus 235 ~ 235 (286)
T PRK13646 235 K 235 (286)
T ss_pred h
Confidence 5
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=377.61 Aligned_cols=218 Identities=33% Similarity=0.544 Sum_probs=184.3
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc---cCC--CCceEEECCeecCCC--CH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERF---YDP--LKGSVFMDEQDIRNY--NL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl---~~p--~~G~I~idG~di~~i--~~ 1080 (1255)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999963 4599999999999999999999999999999999997 454 589999999998754 34
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC--CC-----CHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHH
Q 000846 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKA--DA-----RESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~~-----~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQk 1153 (1255)
..+|++++||||+|.+|..|++||+.++.. .. .++++.++++..++.+++ ++.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHH
Confidence 677889999999999999999999976421 11 122344444444443222 2334566778999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1154 QrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999854 999999999999999999999
Q ss_pred Hhh
Q 000846 1233 VAL 1235 (1255)
Q Consensus 1233 l~~ 1235 (1255)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14245 233 FTN 235 (250)
T ss_pred hcC
Confidence 864
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=379.86 Aligned_cols=213 Identities=31% Similarity=0.529 Sum_probs=183.3
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCC-HHHHhcce
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN-LKQLRSHI 1087 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-~~~lR~~i 1087 (1255)
|+++||+++|++ ++++|+||||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999963 245999999999999999999999999999999999999999999999999998765 46778899
Q ss_pred EEEccCCC--CCcccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHH
Q 000846 1088 ALVSQEPT--LFAGTIRENIAYGKA--DARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALA 1159 (1255)
Q Consensus 1088 ~~V~Qdp~--LF~gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalA 1159 (1255)
+|+||+|. +++.|++|||.++.. ..+. +++.++++..++.+ ........||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEK-----------YRHRSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-----------HhcCCcccCCHHHHHHHHHH
Confidence 99999985 677899999987532 1222 23334444444433 33444578999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHh
Q 000846 1160 RAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1160 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
|||+.+|+||||||||++||+.+...+.+.|++.. +|+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999875 4899999999999998899999999999999999999865
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=380.00 Aligned_cols=213 Identities=30% Similarity=0.476 Sum_probs=185.5
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 4899999999963 3699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCC----------CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHH
Q 000846 1088 ALVSQEPTLFA-GTIRENIAYGKA----------DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRI 1156 (1255)
Q Consensus 1088 ~~V~Qdp~LF~-gTIreNl~~g~~----------~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrl 1156 (1255)
+|+||++.++. .|++||+.++.. ...++++.++++..++.++... ...+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHR-----------LVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCCHHHHHHH
Confidence 99999987765 499999987531 0112345566666665444322 2357999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHH
Q 000846 1157 ALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1157 alARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl 1233 (1255)
+|||||+.+|+||||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999999875 3799999999999985 59999999999999999999986
Q ss_pred h
Q 000846 1234 A 1234 (1255)
Q Consensus 1234 ~ 1234 (1255)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 5
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=379.61 Aligned_cols=212 Identities=34% Similarity=0.585 Sum_probs=182.2
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++++|+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++++++
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999963 23599999999999999999999999999999999999999999999999999888878888899
Q ss_pred EEeccCC--ccCcccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHH
Q 000846 424 GLVNQEP--VLFATSITENILFGKD--GASM----DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIA 495 (1255)
Q Consensus 424 ~~v~Q~~--~l~~~ti~~ni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lA 495 (1255)
+||+|+| .++..|++||+.++.. .... +++.++++..++.+ .......+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWD-----------FRDKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-----------HhcCChhhCCHHHHHHHHHH
Confidence 9999998 5778899999998632 1122 12333333444433 34444568999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 000846 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 496 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l 568 (1255)
|||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999998874 4899999999999984 6999999999999999998764
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=367.28 Aligned_cols=203 Identities=26% Similarity=0.446 Sum_probs=177.6
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++||+++|++ .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.+||.++... ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999963 4699999999999999999999999999999999999999999999999998764 56788999
Q ss_pred EEccCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 000846 1089 LVSQEPTLF-AGTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKN 1165 (1255)
Q Consensus 1089 ~V~Qdp~LF-~gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~ 1165 (1255)
||||++.+| +.|++||+.++.. ..+++++.++++..++.+... .....||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcC
Confidence 999999887 5799999976531 234556777777777655433 23457999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000846 1166 PSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227 (1255)
Q Consensus 1166 p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1227 (1255)
|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999875 47999999999999865 9999999999999875
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-42 Score=372.26 Aligned_cols=208 Identities=37% Similarity=0.509 Sum_probs=172.4
Q ss_pred EEEEEEEEECCCCC-CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHH----H
Q 000846 1009 IELKNVFFAYPTRP-DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ----L 1083 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~-~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~----l 1083 (1255)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996421 146999999999999999999999999999999999999999999999999998876432 4
Q ss_pred hcceEEEccCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHH
Q 000846 1084 RSHIALVSQEPTLFAG-TIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALAR 1160 (1255)
Q Consensus 1084 R~~i~~V~Qdp~LF~g-TIreNl~~g~~--~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalAR 1160 (1255)
|++++|+||+|.+|.+ |++||+.++.. ....++. ...+.+++..+ |++........+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 6789999999999976 99999987532 1111111 11122333333 4444445556789999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEE
Q 000846 1161 AILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQKSDTIAVIKNGRV 1223 (1255)
Q Consensus 1161 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~i 1223 (1255)
||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998764 7999999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=377.58 Aligned_cols=221 Identities=32% Similarity=0.545 Sum_probs=189.0
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++..++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCCC----------CCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHH
Q 000846 1089 LVSQEPTLFAG-TIRENIAYGKAD----------ARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIA 1157 (1255)
Q Consensus 1089 ~V~Qdp~LF~g-TIreNl~~g~~~----------~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrla 1157 (1255)
|+||++.+|.+ |++||+.++... ..++++.++++..++.++ .......||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHL-----------ADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHH-----------HcCCcccCCHHHHHHHH
Confidence 99999998876 999999876311 112234444554454333 23345689999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1158 LARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1158 lARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
||||++++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.+ ||+|++|++|++++.|++++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 9999999999999999999999999999999999875 47999999999999865 999999999999999999998653
Q ss_pred hcCchhHHHHh
Q 000846 1236 SRGGAYYSLIK 1246 (1255)
Q Consensus 1236 ~~~g~y~~l~~ 1246 (1255)
..+.+.+.
T Consensus 229 ---~~~~~~~~ 236 (255)
T PRK11231 229 ---GLLRTVFD 236 (255)
T ss_pred ---HHHHHHhC
Confidence 34555553
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=373.96 Aligned_cols=217 Identities=33% Similarity=0.516 Sum_probs=183.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCC-----ccEEEECCeecCCC--CHH
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV-----EGEVLLDGYKIRRL--HLK 417 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~-----~G~i~~~g~~~~~~--~~~ 417 (1255)
|+++||+++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999974 35999999999999999999999999999999999999998 99999999998753 355
Q ss_pred HHhcccEEeccCCccCcccHHHHhccCCCC---CCHHHHHHHHHHhchHHHHhcCCCccc----chhcCCCCCCChHHHH
Q 000846 418 WLRSQMGLVNQEPVLFATSITENILFGKDG---ASMDDVISAAKAANAHDFITKLPDGYE----TQVGQLGFQMSGGQKQ 490 (1255)
Q Consensus 418 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~----t~~~~~g~~LSgGqrq 490 (1255)
..+++++|+||++.+|+.|++||+.++... ...++..+ .+.+.++.+ |+. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDE-----IVEESLKKA--ALWDEVKDRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHH-----HHHHHHHHc--CCCcchhhHhhCCcccCCHHHHH
Confidence 678899999999999999999999875321 11111111 122233333 443 4456677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHh
Q 000846 491 RIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELM 569 (1255)
Q Consensus 491 ri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~ 569 (1255)
|++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998876789999999999885 59999999999999999999987
Q ss_pred cc
Q 000846 570 NR 571 (1255)
Q Consensus 570 ~~ 571 (1255)
..
T Consensus 232 ~~ 233 (247)
T TIGR00972 232 TN 233 (247)
T ss_pred hC
Confidence 54
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=376.49 Aligned_cols=227 Identities=30% Similarity=0.506 Sum_probs=189.1
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CCceEEECCeecCCC--CH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP-----LKGSVFMDEQDIRNY--NL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~ 1080 (1255)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 3899999999963 4699999999999999999999999999999999999984 899999999998753 34
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC---CC----CHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHH
Q 000846 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKA---DA----RESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~---~~----~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQk 1153 (1255)
..+|++++|+||+|.+|..|++||+.++.. .. .++++.++++..++.+.+ +........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHH
Confidence 567889999999999999999999986421 11 122344455555543322 1224556778999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1154 QrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999998778999999999998754 999999999999999999999
Q ss_pred HhhhcCchhHHHH
Q 000846 1233 VALSRGGAYYSLI 1245 (1255)
Q Consensus 1233 l~~~~~g~y~~l~ 1245 (1255)
.+. +...|.+.+
T Consensus 233 ~~~-~~~~~~~~~ 244 (250)
T PRK14262 233 VER-PKNKLTEEY 244 (250)
T ss_pred HhC-CCChHHHHH
Confidence 764 334455433
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=376.62 Aligned_cols=218 Identities=33% Similarity=0.547 Sum_probs=184.1
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeecCC--CCH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKIRR--LHL 416 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 416 (1255)
.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5999999999963 359999999999999999999999999999999999974 689999999999864 345
Q ss_pred HHHhcccEEeccCCccCcccHHHHhccCCC--CC-C----HHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHH
Q 000846 417 KWLRSQMGLVNQEPVLFATSITENILFGKD--GA-S----MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQK 489 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqr 489 (1255)
..+|++++|++|++.+|+.|++||+.++.. .. . .+++.++++..++.+. +.+..+..+.+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDE-------VKDRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchh-------hhHHhhCCcccCCHHHH
Confidence 567889999999999998999999987531 11 1 1223333333333221 12345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 000846 490 QRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 490 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l 568 (1255)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999877899999999999985 5999999999999999999998
Q ss_pred hcc
Q 000846 569 MNR 571 (1255)
Q Consensus 569 ~~~ 571 (1255)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 764
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=374.63 Aligned_cols=204 Identities=31% Similarity=0.490 Sum_probs=176.9
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 4999999999963 46999999999999999999999999999999999999999999999998763 467899
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 000846 1088 ALVSQEPTLFA-GTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNP 1166 (1255)
Q Consensus 1088 ~~V~Qdp~LF~-gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p 1166 (1255)
+|+||++.+|. .|++||+.++.....++++.++++..++.++ ......+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADR-----------ANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 6999999876432224455555555555433 34455789999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHH
Q 000846 1167 SILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHN 1230 (1255)
Q Consensus 1167 ~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~ 1230 (1255)
++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999999874 37999999999999854 9999999999999988754
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=375.07 Aligned_cols=219 Identities=30% Similarity=0.454 Sum_probs=183.7
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeecCC--CC
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP-----VEGEVLLDGYKIRR--LH 415 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 415 (1255)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 36999999999963 3599999999999999999999999999999999999997 48999999998853 34
Q ss_pred HHHHhcccEEeccCCccCcccHHHHhccCCCCC---CH----HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHH
Q 000846 416 LKWLRSQMGLVNQEPVLFATSITENILFGKDGA---SM----DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQ 488 (1255)
Q Consensus 416 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 488 (1255)
...+|++++|++|++.+|+.|++|||.++.... .. +.+.++++..++.+. +.......+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNE-------VKDKLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchh-------hHHHHhCCcccCCHHH
Confidence 456788999999999999899999998763211 11 223333333333211 1223445678999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhH
Q 000846 489 KQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNE 567 (1255)
Q Consensus 489 rqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~ 567 (1255)
|||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999877899999999999985 599999999999999999999
Q ss_pred Hhcc
Q 000846 568 LMNR 571 (1255)
Q Consensus 568 l~~~ 571 (1255)
+.++
T Consensus 236 ~~~~ 239 (254)
T PRK14273 236 LFFN 239 (254)
T ss_pred HHhC
Confidence 9764
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=380.67 Aligned_cols=220 Identities=32% Similarity=0.546 Sum_probs=184.6
Q ss_pred eEEEEeEEEEcCCCC--CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCC----CCHH
Q 000846 344 EIEFRDVYFCYPSRP--DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRR----LHLK 417 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~----~~~~ 417 (1255)
.|+++|++|+|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 388999999997421 1469999999999999999999999999999999999999999999999999863 2455
Q ss_pred HHhcccEEeccCC--ccCcccHHHHhccCCCC--CCHHHHHHHHHHhchHHHHhcCCCccc-chhcCCCCCCChHHHHHH
Q 000846 418 WLRSQMGLVNQEP--VLFATSITENILFGKDG--ASMDDVISAAKAANAHDFITKLPDGYE-TQVGQLGFQMSGGQKQRI 492 (1255)
Q Consensus 418 ~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqrqri 492 (1255)
..|+.|+||+|+| .+|+.||+|||.|+... .+.++..+ .+.+.++.+ |++ ........+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQ-----KAREMIELV--GLPEELLARSPFELSGGQMRRV 154 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCChhhhhCCcccCCHHHHHHH
Confidence 6788999999998 68888999999886421 22222221 122334444 554 334566789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHh
Q 000846 493 AIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELM 569 (1255)
Q Consensus 493 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~ 569 (1255)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ |.|+|++||+++.+. .||||++|++|++++.|+++++.
T Consensus 155 ~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 155 AIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999998743 899999999999985 59999999999999999999986
Q ss_pred c
Q 000846 570 N 570 (1255)
Q Consensus 570 ~ 570 (1255)
+
T Consensus 235 ~ 235 (290)
T PRK13634 235 A 235 (290)
T ss_pred c
Confidence 5
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=379.27 Aligned_cols=224 Identities=24% Similarity=0.424 Sum_probs=186.1
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHH---HHh
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLK---QLR 1084 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR 1084 (1255)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999876643 357
Q ss_pred cceEEEccCCCCCcc-cHHHHHhcCCC---CCCHH----HHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHH
Q 000846 1085 SHIALVSQEPTLFAG-TIRENIAYGKA---DARES----EIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRI 1156 (1255)
Q Consensus 1085 ~~i~~V~Qdp~LF~g-TIreNl~~g~~---~~~~~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrl 1156 (1255)
++++|+||++.+|.+ |++||+.++.. ..+.+ .+.+.++..+ ++........+||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVG-----------LRGAAKLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHH
Confidence 889999999999986 99999976421 11221 2222333333 33223344568999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHH
Q 000846 1157 ALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1157 alARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl 1233 (1255)
+|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999999866 9999999999999999999998
Q ss_pred hhhcCchhHHHHh
Q 000846 1234 ALSRGGAYYSLIK 1246 (1255)
Q Consensus 1234 ~~~~~g~y~~l~~ 1246 (1255)
+. +...+..++.
T Consensus 233 ~~-~~~~~~~~~~ 244 (269)
T PRK11831 233 AN-PDPRVRQFLD 244 (269)
T ss_pred cC-CcHHHHHHHH
Confidence 64 3344555554
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=375.16 Aligned_cols=221 Identities=35% Similarity=0.562 Sum_probs=184.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCC---HHHHhc
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH---LKWLRS 421 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~r~ 421 (1255)
++++|++++|++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999964 146999999999999999999999999999999999999999999999999998776 456788
Q ss_pred ccEEeccCCccCc-ccHHHHhccCCCCCC--HHHH---HHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHH
Q 000846 422 QMGLVNQEPVLFA-TSITENILFGKDGAS--MDDV---ISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIA 495 (1255)
Q Consensus 422 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~--~~~~---~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lA 495 (1255)
.++|++|++.+|. .|++||+.++..... ...+ ........+.+.+..+ |+.......+.+||||||||++||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc--CChhhhCCCcccCCHHHHHHHHHH
Confidence 9999999999887 599999987532110 0000 0001111223445554 566566777889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHh
Q 000846 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELM 569 (1255)
Q Consensus 496 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~ 569 (1255)
|||+.+|++|||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999999999999874 3899999999999987 59999999999999999998863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=375.38 Aligned_cols=220 Identities=32% Similarity=0.544 Sum_probs=186.2
Q ss_pred cceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeecCC--C
Q 000846 342 RGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKIRR--L 414 (1255)
Q Consensus 342 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~ 414 (1255)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 457999999999963 359999999999999999999999999999999999986 589999999999853 3
Q ss_pred CHHHHhcccEEeccCCccCcccHHHHhccCCC---CCCHH----HHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChH
Q 000846 415 HLKWLRSQMGLVNQEPVLFATSITENILFGKD---GASMD----DVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGG 487 (1255)
Q Consensus 415 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 487 (1255)
+...+|++++|++|++.+|+.|++||+.++.. ..+.+ ++.++++..++. .++....++...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALW-------NEVKDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCC-------hhhHHHHhcCCCCCCHH
Confidence 45677889999999999999999999987532 11222 222333333221 12234566778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChh
Q 000846 488 QKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHN 566 (1255)
Q Consensus 488 qrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~ 566 (1255)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877889999999999985 59999999999999999999
Q ss_pred HHhcc
Q 000846 567 ELMNR 571 (1255)
Q Consensus 567 ~l~~~ 571 (1255)
++...
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 98764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=373.17 Aligned_cols=221 Identities=24% Similarity=0.404 Sum_probs=185.2
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHH-Hhcce
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ-LRSHI 1087 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~i 1087 (1255)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 36999999999999999999999999999999999999999999999999998877654 45679
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCCCCCH--HH---HHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHH
Q 000846 1088 ALVSQEPTLFAG-TIRENIAYGKADARE--SE---IKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161 (1255)
Q Consensus 1088 ~~V~Qdp~LF~g-TIreNl~~g~~~~~~--~e---i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARA 1161 (1255)
+|+||++.+|.+ |++||+.++...... .. .........+.+++..+ |++.........||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999986 999999875321000 00 00001112233444433 45555556677899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000846 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1162 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
++++|++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+.+ ||+|++|++|++++.|++++++.
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999998778999999999999975 99999999999999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=374.40 Aligned_cols=218 Identities=32% Similarity=0.561 Sum_probs=185.8
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
++++||+++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999741 45999999999999999999999999999999999999999999999999998877777788999
Q ss_pred EeccCCccCc-ccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccc--hhcCCCCCCChHHHHHHHHHHHhc
Q 000846 425 LVNQEPVLFA-TSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYET--QVGQLGFQMSGGQKQRIAIARALI 499 (1255)
Q Consensus 425 ~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t--~~~~~g~~LSgGqrqri~lARal~ 499 (1255)
|++|+|.+|. .|++||+.++.. ....++. ...+.+.++.+ |+.. ...+.+.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999986 599999987531 1111111 12233455555 5553 566778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhcc
Q 000846 500 RDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 500 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
++|++|||||||++||+.+.+.+.+.|+++.+ |+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999998743 899999999999875 5999999999999999999988654
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=385.95 Aligned_cols=226 Identities=29% Similarity=0.461 Sum_probs=186.5
Q ss_pred cEEEEEEEEECCCCC-------CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCH
Q 000846 1008 RIELKNVFFAYPTRP-------DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~-------~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~ 1080 (1255)
-|+++|++++|+.+. ..++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999997321 2469999999999999999999999999999999999999999999999999988875
Q ss_pred H---HHhcceEEEccCCC--CCc-ccHHHHHhcCC---CCCCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCC
Q 000846 1081 K---QLRSHIALVSQEPT--LFA-GTIRENIAYGK---ADARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQ 1147 (1255)
Q Consensus 1081 ~---~lR~~i~~V~Qdp~--LF~-gTIreNl~~g~---~~~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 1147 (1255)
. .+|++|+||||+|. |+. .|+.+|+..+. ...+. +++.++++.+++. +..++. ...+
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~------~~~~~~----~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLR------PEHYDR----YPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCC------hHHhcC----CCcc
Confidence 3 56889999999994 555 49999985321 11122 2334444444432 123333 3567
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEE
Q 000846 1148 LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVV 1224 (1255)
Q Consensus 1148 LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~iv 1224 (1255)
||||||||++|||||+.+|+|||+||||++||..+.+.|.+.|+++.+ ++|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 8999999999999975 9999999999999
Q ss_pred EecCHHHHHhhhcCchhHHH
Q 000846 1225 EQGSHNELVALSRGGAYYSL 1244 (1255)
Q Consensus 1225 e~G~~~eLl~~~~~g~y~~l 1244 (1255)
|.|+++++++. +...|.+.
T Consensus 235 e~g~~~~~~~~-p~hpyt~~ 253 (327)
T PRK11308 235 EKGTKEQIFNN-PRHPYTQA 253 (327)
T ss_pred EECCHHHHhcC-CCCHHHHH
Confidence 99999999975 45556653
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=376.59 Aligned_cols=218 Identities=30% Similarity=0.521 Sum_probs=184.6
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCeecCC--CCH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDIRN--YNL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~ 1080 (1255)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 4999999999963 359999999999999999999999999999999999997 699999999999853 355
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC--CCCHH-----HHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHH
Q 000846 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKA--DARES-----EIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~~~~~-----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQk 1153 (1255)
..+|++++|+||+|.+|..|++||+.++.. ..+++ .+.++++..++. +++.......+.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHH
Confidence 678899999999999999999999986421 12221 122233322221 1233334556778999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1154 QrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred Hhh
Q 000846 1233 VAL 1235 (1255)
Q Consensus 1233 l~~ 1235 (1255)
.+.
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 764
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=368.37 Aligned_cols=203 Identities=32% Similarity=0.570 Sum_probs=172.7
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999963 3699999999999999999999999999999999999999999999999999766543 57899
Q ss_pred EEccCCCCCc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHH
Q 000846 1089 LVSQEPTLFA-GTIRENIAYGKA--DARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161 (1255)
Q Consensus 1089 ~V~Qdp~LF~-gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARA 1161 (1255)
|+||++.+|. .|++||+.++.. ..+. +++.++++..++.++ ......+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHL-----------LDRKPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH-----------HhCChhhCCHHHHHHHHHHHH
Confidence 9999999885 699999986521 1122 233344444444333 334456899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000846 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227 (1255)
Q Consensus 1162 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1227 (1255)
++++|+||||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999875 37999999999999876 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=369.48 Aligned_cols=209 Identities=32% Similarity=0.509 Sum_probs=172.8
Q ss_pred EEEEEEEEECCCCC-CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHH---Hh
Q 000846 1009 IELKNVFFAYPTRP-DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ---LR 1084 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~-~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---lR 1084 (1255)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 246999999999999999999999999999999999999999999999999998877654 34
Q ss_pred -cceEEEccCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHH
Q 000846 1085 -SHIALVSQEPTLFA-GTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALAR 1160 (1255)
Q Consensus 1085 -~~i~~V~Qdp~LF~-gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalAR 1160 (1255)
++|+||||+|.+|. .|++||+.++.. ..+.++..+ .+.+++..+ |++.........||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE-----RAYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 68999999999985 699999976421 111111111 112233322 4444444556789999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEE
Q 000846 1161 AILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQKSDTIAVIKNGRVV 1224 (1255)
Q Consensus 1161 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~G~iv 1224 (1255)
||+++|+||||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+..||+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999875 378999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=369.96 Aligned_cols=217 Identities=30% Similarity=0.474 Sum_probs=181.2
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHH-Hhccc
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW-LRSQM 423 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 423 (1255)
|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 478999999963 35999999999999999999999999999999999999999999999999998777654 36789
Q ss_pred EEeccCCccCcc-cHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 000846 424 GLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDP 502 (1255)
Q Consensus 424 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~ 502 (1255)
+|++|++.+|.. |++||+.++.......+..+ .+.+.++.++ +++........+||||||||++||||++.+|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKA-----RLERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHH-----HHHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 99999987643221111111 1122223221 2344455667899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 503 KILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 503 ~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999998875 5899999999999875 499999999999999999888753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=392.13 Aligned_cols=214 Identities=27% Similarity=0.447 Sum_probs=186.6
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++..++...++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999973 4699999999999999999999999999999999999999999999999999998888899999
Q ss_pred EEeccCCcc-CcccHHHHhccCCCCC-------C---HHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHH
Q 000846 424 GLVNQEPVL-FATSITENILFGKDGA-------S---MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRI 492 (1255)
Q Consensus 424 ~~v~Q~~~l-~~~ti~~ni~~~~~~~-------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri 492 (1255)
|||+|++.+ ++.|++||+.++.... . .+.+.++++.. |+.........+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~v-----------gl~~~~~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERT-----------GVAQFADRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHH
Confidence 999999987 5679999998875211 1 12233344444 444444555679999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 493 AIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 493 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
+|||||+++|++|||||||++||+.++..+.+.|+++. +|+|+|++||+++.+. .|||+++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999885 4899999999999985 599999999999999999999876
Q ss_pred c
Q 000846 571 R 571 (1255)
Q Consensus 571 ~ 571 (1255)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 3
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=375.07 Aligned_cols=227 Identities=26% Similarity=0.470 Sum_probs=189.8
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CCceEEECCeecCCC--CH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP-----LKGSVFMDEQDIRNY--NL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~ 1080 (1255)
.|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 4699999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC--CC-C----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHH
Q 000846 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKA--DA-R----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~~-~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQk 1153 (1255)
...|+.++|+||+|.+|+.|++||+.++.. .. . ++.+.++++..++.+ ++.+..+..+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-------EVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-------hhHHHhhcChhhCCHHHH
Confidence 677889999999999999999999987532 11 1 123334444443322 223345666788999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1154 QrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
||++||||++.+|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999964 999999999999999999999
Q ss_pred HhhhcCchhHHHH
Q 000846 1233 VALSRGGAYYSLI 1245 (1255)
Q Consensus 1233 l~~~~~g~y~~l~ 1245 (1255)
.+. +...+.+.+
T Consensus 236 ~~~-~~~~~~~~~ 247 (253)
T PRK14261 236 FEN-PHEELTENY 247 (253)
T ss_pred HhC-CCcHHHHHH
Confidence 764 344455544
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=379.49 Aligned_cols=219 Identities=32% Similarity=0.531 Sum_probs=183.1
Q ss_pred EEEEEEEEECCCCC--CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCC----CHHH
Q 000846 1009 IELKNVFFAYPTRP--DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNY----NLKQ 1082 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~--~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~~~~ 1082 (1255)
|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 13699999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhcceEEEccCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHccccccc-cccCCCCCCCChHHHHHHH
Q 000846 1083 LRSHIALVSQEP--TLFAGTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYD-TYCGERGVQLSGGQKQRIA 1157 (1255)
Q Consensus 1083 lR~~i~~V~Qdp--~LF~gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~i~~lp~gld-t~vge~G~~LSgGQkQrla 1157 (1255)
+|++|+|+||+| .+|+.|++||+.++.. ..+.++..+. +.++++.+ |++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 889999999998 6888999999986421 1233333221 12223222 343 2234556789999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000846 1158 LARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1158 lARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
|||||+++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||++++|++|++++.|+++++++
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999875 47899999999999865 99999999999999999999865
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=369.34 Aligned_cols=203 Identities=33% Similarity=0.579 Sum_probs=170.8
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHH---HHhc
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLK---WLRS 421 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r~ 421 (1255)
|+++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 23599999999999999999999999999999999999999999999999998766533 4678
Q ss_pred ccEEeccCCccCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHH
Q 000846 422 QMGLVNQEPVLFAT-SITENILFGKD--GAS----MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAI 494 (1255)
Q Consensus 422 ~i~~v~Q~~~l~~~-ti~~ni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~l 494 (1255)
+++|++|+|.+|.. |++||+.++.. ... .+++.++ ++.+ |+.........+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAA---------LEKV--GLEGKAHALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHH---------HHHc--CChhhhhCChhhCCHHHHHHHHH
Confidence 99999999998875 99999987521 111 1223333 3333 44444455557999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEE
Q 000846 495 ARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKV 559 (1255)
Q Consensus 495 ARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i 559 (1255)
||||+.+|++|||||||++||+++++.+.+.|+++. +|+|+|+|||+++.+. .||+|++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 4899999999999986 4999999999974
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=391.85 Aligned_cols=217 Identities=33% Similarity=0.550 Sum_probs=185.1
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++|++++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.+.+. .|++|
T Consensus 19 ~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 19 LLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred eEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999963 369999999999999999999999999999999999999999999999999987664 57899
Q ss_pred EEEccCCCCCcc-cHHHHHhcCCC--CCCHH----HHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHH
Q 000846 1088 ALVSQEPTLFAG-TIRENIAYGKA--DARES----EIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALAR 1160 (1255)
Q Consensus 1088 ~~V~Qdp~LF~g-TIreNl~~g~~--~~~~~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalAR 1160 (1255)
+||+|++.+|.. |++|||.|+.. ..+.. ++.+.++..++.++ ......+||||||||+||||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~-----------~~~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEF-----------AKRKPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHH
Confidence 999999999975 99999998742 12222 33344444444333 33445689999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHHhhhc
Q 000846 1161 AILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVALSR 1237 (1255)
Q Consensus 1161 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl~~~~ 1237 (1255)
||+++|+|||||||||+||+.+...+.+.|++.. .+.|+|+|||+++.+. -||+|+||++|++++.|+++++..+ +
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~-p 241 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH-P 241 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC-C
Confidence 9999999999999999999999999998888764 3789999999999875 5999999999999999999999875 4
Q ss_pred Cchh
Q 000846 1238 GGAY 1241 (1255)
Q Consensus 1238 ~g~y 1241 (1255)
...|
T Consensus 242 ~~~~ 245 (377)
T PRK11607 242 TTRY 245 (377)
T ss_pred ccHH
Confidence 5444
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=380.64 Aligned_cols=220 Identities=26% Similarity=0.504 Sum_probs=183.8
Q ss_pred eEEEEeEEEEcCCCC--CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCC--------
Q 000846 344 EIEFRDVYFCYPSRP--DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRR-------- 413 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~-------- 413 (1255)
.|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999997432 1359999999999999999999999999999999999999999999999887632
Q ss_pred ----------------CCHHHHhcccEEeccCC--ccCcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcc
Q 000846 414 ----------------LHLKWLRSQMGLVNQEP--VLFATSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGY 473 (1255)
Q Consensus 414 ----------------~~~~~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~ 473 (1255)
.+...++++||||+|+| .+|..||+|||.|+.. ....++..+ .+.+.+..+ |+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL 154 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKK-----RAAKYIELV--GL 154 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHc--CC
Confidence 13456788999999986 6788899999998743 122222221 122334444 55
Q ss_pred c-chhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhh-hhcCE
Q 000846 474 E-TQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTI-RTANL 550 (1255)
Q Consensus 474 ~-t~~~~~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~-~~~d~ 550 (1255)
+ ........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+ ..|||
T Consensus 155 ~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adr 234 (305)
T PRK13651 155 DESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKR 234 (305)
T ss_pred ChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCE
Confidence 4 34667778999999999999999999999999999999999999999999998874 489999999999987 56999
Q ss_pred EEEEeCCEEEEecChhHHhc
Q 000846 551 IMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 551 i~vl~~G~i~~~g~~~~l~~ 570 (1255)
|++|++|++++.|+++++.+
T Consensus 235 v~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 235 TIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred EEEEECCEEEEECCHHHHhc
Confidence 99999999999999999875
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=374.26 Aligned_cols=218 Identities=31% Similarity=0.501 Sum_probs=185.4
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CCceEEECCeecCCC--CH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP-----LKGSVFMDEQDIRNY--NL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~ 1080 (1255)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4899999999963 4699999999999999999999999999999999999975 799999999998653 34
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC--CC-C----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHH
Q 000846 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKA--DA-R----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~~-~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQk 1153 (1255)
..+|++++|+||++.+|..|++||+.++.. .. + .+++.++++.+++.+.+. .........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHH
Confidence 567899999999999999999999986521 11 1 123444555555432222 223445678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1154 QrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777999999999999865 999999999999999999999
Q ss_pred Hhh
Q 000846 1233 VAL 1235 (1255)
Q Consensus 1233 l~~ 1235 (1255)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 764
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=373.57 Aligned_cols=220 Identities=32% Similarity=0.553 Sum_probs=183.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCH---HHHhc
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHL---KWLRS 421 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r~ 421 (1255)
|+++||+++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2459999999999999999999999999999999999999999999999999877653 34678
Q ss_pred ccEEeccCCccCc-ccHHHHhccCCCCCC--HHHH---HHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHH
Q 000846 422 QMGLVNQEPVLFA-TSITENILFGKDGAS--MDDV---ISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIA 495 (1255)
Q Consensus 422 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~--~~~~---~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lA 495 (1255)
+++|++|++.+|. .|++||+.++..... .... ........+.+.++.+ |++......+.+||||||||++||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHH
Confidence 8999999999887 499999987642110 0000 0000112233445555 666666777889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 000846 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 496 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l 568 (1255)
|||+.+|++|||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 99999999999999999999999999999999874 3799999999999985 5999999999999999999886
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=374.97 Aligned_cols=218 Identities=29% Similarity=0.479 Sum_probs=187.0
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCeecC--CCCH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDIR--NYNL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~--~i~~ 1080 (1255)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++. ..+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999963 369999999999999999999999999999999999986 47999999999985 3455
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCCC--C---CHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHH
Q 000846 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKAD--A---RESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQR 1155 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~--~---~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQr 1155 (1255)
..+|++|+|+||++.+|+.|++||+.++... . .++++.++++.+++.+++.. .....+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 6788999999999999989999999875321 1 12344455666666544432 2345677899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEe---------CCEEEE
Q 000846 1156 IALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIK---------NGRVVE 1225 (1255)
Q Consensus 1156 lalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~---------~G~ive 1225 (1255)
++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998777899999999998855 89999998 899999
Q ss_pred ecCHHHHHhh
Q 000846 1226 QGSHNELVAL 1235 (1255)
Q Consensus 1226 ~G~~~eLl~~ 1235 (1255)
.|+++++.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999999864
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=376.06 Aligned_cols=219 Identities=33% Similarity=0.510 Sum_probs=186.5
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CCceEEECCeecCC--CC
Q 000846 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP-----LKGSVFMDEQDIRN--YN 1079 (1255)
Q Consensus 1007 g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~ 1079 (1255)
+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 35999999999963 3599999999999999999999999999999999999985 48999999999864 44
Q ss_pred HHHHhcceEEEccCCCCCcccHHHHHhcCCC------CCC-HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHH
Q 000846 1080 LKQLRSHIALVSQEPTLFAGTIRENIAYGKA------DAR-ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQ 1152 (1255)
Q Consensus 1080 ~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~------~~~-~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 1152 (1255)
...+|++|+|+||+|.+|+.|++||+.++.. +.. ++.+.++++.+++.+++.. .....+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 5678899999999999999999999976421 111 2234455666665443321 2344567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEe-----CCEEEEe
Q 000846 1153 KQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIK-----NGRVVEQ 1226 (1255)
Q Consensus 1153 kQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~-----~G~ive~ 1226 (1255)
|||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.+ ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999998778999999999999865 99999997 5999999
Q ss_pred cCHHHHHhh
Q 000846 1227 GSHNELVAL 1235 (1255)
Q Consensus 1227 G~~~eLl~~ 1235 (1255)
|+++++.+.
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 999999764
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=367.44 Aligned_cols=201 Identities=37% Similarity=0.634 Sum_probs=171.1
Q ss_pred EEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceEE
Q 000846 1010 ELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIAL 1089 (1255)
Q Consensus 1010 ~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~ 1089 (1255)
+++|++++|++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|++|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 468999999642 2469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCC--CCCcccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHH
Q 000846 1090 VSQEP--TLFAGTIRENIAYGKA--DARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161 (1255)
Q Consensus 1090 V~Qdp--~LF~gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARA 1161 (1255)
+||+| .++..|++||+.++.. ..+. +++.+.++..++ +........+||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGL-----------EGLRDRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCc-----------HhhhcCCcccCCHHHHHHHHHHHH
Confidence 99998 3678899999976532 1122 223333333333 333344557899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCE
Q 000846 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGR 1222 (1255)
Q Consensus 1162 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ 1222 (1255)
|+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999875 47999999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=375.86 Aligned_cols=218 Identities=28% Similarity=0.471 Sum_probs=185.9
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CCceEEECCeecCCCC-HH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP-----LKGSVFMDEQDIRNYN-LK 1081 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i~-~~ 1081 (1255)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999963 4699999999999999999999999999999999999986 6999999999988763 45
Q ss_pred HHhcceEEEccCCCCCcccHHHHHhcCCC---CCCHHHHHH----HHHHhcHHHHHHccccccccccCCCCCCCChHHHH
Q 000846 1082 QLRSHIALVSQEPTLFAGTIRENIAYGKA---DARESEIKK----AAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQ 1154 (1255)
Q Consensus 1082 ~lR~~i~~V~Qdp~LF~gTIreNl~~g~~---~~~~~ei~~----al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQ 1154 (1255)
.+|++++|+||+|.+|..|+++|+.++.. ..++++..+ .++..++ +..+++.+...+.+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGL-------WDAVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC-------CchhhhHhhCCcccCCHHHHH
Confidence 67899999999999999999999987531 124444322 2222222 222223445667889999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHH
Q 000846 1155 RIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1155 rlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl 1233 (1255)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777899999999999865 9999999999999999999998
Q ss_pred hh
Q 000846 1234 AL 1235 (1255)
Q Consensus 1234 ~~ 1235 (1255)
+.
T Consensus 251 ~~ 252 (276)
T PRK14271 251 SS 252 (276)
T ss_pred hC
Confidence 64
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=371.50 Aligned_cols=219 Identities=32% Similarity=0.558 Sum_probs=184.5
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHH---HHh
Q 000846 345 IEFRDVYFCYPSRP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLK---WLR 420 (1255)
Q Consensus 345 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r 420 (1255)
|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997431 12699999999999999999999999999999999999999999999999998876543 347
Q ss_pred cccEEeccCCccCc-ccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHH
Q 000846 421 SQMGLVNQEPVLFA-TSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARA 497 (1255)
Q Consensus 421 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARa 497 (1255)
+.++|++|++.+|. .|++||+.++.. .....+. ...+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI-----EERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 88999999999997 599999987532 1111111 11223445555 66666666778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 498 LIRDPKILLLDEATSALDAQSERIVQEAIDKVS-K-GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 498 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
++.+|+++||||||++||+.+++.+.+.|+++. + |+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999999874 3 899999999999986 499999999999999999988764
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=342.12 Aligned_cols=223 Identities=27% Similarity=0.478 Sum_probs=194.6
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHH-HHhc
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLK-WLRS 421 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~-~~r~ 421 (1255)
+.+..+|+.++|.+ ++|+++|||++++||++++.||||+||||.+.++.|+.+|++|+|.+||.|++.++.. .-|-
T Consensus 3 ~~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 35789999999974 4599999999999999999999999999999999999999999999999999999975 4566
Q ss_pred ccEEeccCCccCcc-cHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhcc
Q 000846 422 QMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIR 500 (1255)
Q Consensus 422 ~i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~ 500 (1255)
.|||+||||.+|.+ ||+|||..-.+ ..+.+...+.+...+++.++.+ ++...-...+..||||||+|+.|||||..
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE-~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLE-IREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHh-hhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhc
Confidence 89999999999987 99999986443 1221222233444455666666 77778888999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCch-hhhhcCEEEEEeCCEEEEecChhHHhcc
Q 000846 501 DPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 501 ~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
+|+.++||||+|++||.+-..|++.++.++ +|..|++.-|+.. ++..|||.+++.+|+|..+|+|+|+.++
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 999999999999999999999999999885 4889999999987 5678999999999999999999999875
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=378.76 Aligned_cols=219 Identities=29% Similarity=0.536 Sum_probs=182.5
Q ss_pred EEEEEEEEECCCCC--CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCC----CHHH
Q 000846 1009 IELKNVFFAYPTRP--DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNY----NLKQ 1082 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~--~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~~~~ 1082 (1255)
|+++||+++|++.. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996321 14699999999999999999999999999999999999999999999999998653 3456
Q ss_pred HhcceEEEccCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHcccccccc-ccCCCCCCCChHHHHHHH
Q 000846 1083 LRSHIALVSQEP--TLFAGTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDT-YCGERGVQLSGGQKQRIA 1157 (1255)
Q Consensus 1083 lR~~i~~V~Qdp--~LF~gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~i~~lp~gldt-~vge~G~~LSgGQkQrla 1157 (1255)
.|+.|+|+||+| .+|..|++||+.++.. ..+.++..+ .+.+++..+ |++. .......+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl~ 155 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKV--GLSEDLISKSPFELSGGQMRRVA 155 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhHhhCCcccCCHHHHHHHH
Confidence 788999999998 5888899999986531 222222211 122333332 4432 234556789999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHHh
Q 000846 1158 LARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1158 lARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
|||||+.+|++|||||||++||+.+.+.+.+.|++.. ++.|+|++||+++.+. -||+|++|++|++++.|+++++++
T Consensus 156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999875 4789999999999985 599999999999999999999875
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=369.90 Aligned_cols=205 Identities=33% Similarity=0.507 Sum_probs=172.8
Q ss_pred EEEEEEEEECCCCC-CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1009 IELKNVFFAYPTRP-DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~-~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
|+++|++++|+... .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999996311 1469999999999999999999999999999999999999999999999999863 46789
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHH
Q 000846 1088 ALVSQEPTLFA-GTIRENIAYGKA--DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALAR 1160 (1255)
Q Consensus 1088 ~~V~Qdp~LF~-gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalAR 1160 (1255)
+||||+|.+|. .|++||+.++.. ..+ ++++.++++..++.++ ......+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGF-----------ENAYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCCcccCCHHHHHHHHHHH
Confidence 99999999987 699999976421 111 2334444444444433 33344679999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEe--CCEEEEecCH
Q 000846 1161 AILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIK--NGRVVEQGSH 1229 (1255)
Q Consensus 1161 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~--~G~ive~G~~ 1229 (1255)
||+++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|+ +|++++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999874 37899999999998754 99999999 7999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=367.81 Aligned_cols=201 Identities=32% Similarity=0.484 Sum_probs=172.7
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHH---HHhc
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLK---QLRS 1085 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR~ 1085 (1255)
|+++|++++|++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 24699999999999999999999999999999999999999999999999999887643 4688
Q ss_pred ceEEEccCCCCCc-ccHHHHHhcCCC------CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHH
Q 000846 1086 HIALVSQEPTLFA-GTIRENIAYGKA------DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIAL 1158 (1255)
Q Consensus 1086 ~i~~V~Qdp~LF~-gTIreNl~~g~~------~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlal 1158 (1255)
+++|+||+|.+|. .|++||+.++.. ...++++.++++..++.++... ...+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADA-----------FPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHH
Confidence 9999999999886 699999976421 1123455566666665544332 235799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCE
Q 000846 1159 ARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGR 1222 (1255)
Q Consensus 1159 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ 1222 (1255)
||||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999875 48999999999999976 89999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=380.38 Aligned_cols=222 Identities=30% Similarity=0.471 Sum_probs=182.6
Q ss_pred cccEEEEEEEEECCCCC--CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCC----C-
Q 000846 1006 RGRIELKNVFFAYPTRP--DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRN----Y- 1078 (1255)
Q Consensus 1006 ~g~I~~~~Vsf~Y~~~~--~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~----i- 1078 (1255)
.+.|+++|++++|+.++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 46799999999997432 1359999999999999999999999999999999999999999999999999852 2
Q ss_pred CHHHHhcceEEEccCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHccccccc-cccCCCCCCCChHHH
Q 000846 1079 NLKQLRSHIALVSQEP--TLFAGTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYD-TYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1079 ~~~~lR~~i~~V~Qdp--~LF~gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~i~~lp~gld-t~vge~G~~LSgGQk 1153 (1255)
+...+|++|+|+||+| .+|..|++||+.++.. ....++..+.+ .+.+..+ |+. ........+||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV-----PELLKLV--QLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhHhcCChhhCCHHHH
Confidence 4567888999999998 4778899999987532 12233322211 1222211 221 123455678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHH
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHN 1230 (1255)
Q Consensus 1154 QrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~ 1230 (1255)
||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998753 789999999999875 49999999999999999999
Q ss_pred HHHh
Q 000846 1231 ELVA 1234 (1255)
Q Consensus 1231 eLl~ 1234 (1255)
+++.
T Consensus 237 ~~~~ 240 (289)
T PRK13645 237 EIFS 240 (289)
T ss_pred HHhc
Confidence 8865
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=367.58 Aligned_cols=207 Identities=34% Similarity=0.563 Sum_probs=174.2
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 468999999963 459999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EeccCCccCc-ccHHHHhccCCCC--CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccC
Q 000846 425 LVNQEPVLFA-TSITENILFGKDG--ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501 (1255)
Q Consensus 425 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~ 501 (1255)
|++|+|.+|. .|++||+.++... ...++.. ..+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIR-----ARVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 4999999875321 1111111 1123444444 555556666789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 000846 502 PKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESG 563 (1255)
Q Consensus 502 ~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g 563 (1255)
|++|||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+. .||+|++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999874 3899999999999875 59999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=371.99 Aligned_cols=216 Identities=24% Similarity=0.436 Sum_probs=184.7
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHH-Hhcce
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ-LRSHI 1087 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~i 1087 (1255)
|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+.+
T Consensus 4 l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 4 LTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred EEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 889999999963 46999999999999999999999999999999999999999999999999998877644 57899
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHc
Q 000846 1088 ALVSQEPTLFA-GTIRENIAYGKA---DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAIL 1163 (1255)
Q Consensus 1088 ~~V~Qdp~LF~-gTIreNl~~g~~---~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALl 1163 (1255)
+|+||++.+|. .|++||+.++.. ..+.++. ...+.+++..+ |++.........||||||||++||||++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 99999999887 499999986531 1122211 12334455544 4555556667889999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHHh
Q 000846 1164 KNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1164 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
++|++|||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+. .||+|++|++|++++.|++++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 9999999999999999999999999998865 4899999999998775 599999999999999999999975
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=382.76 Aligned_cols=222 Identities=29% Similarity=0.449 Sum_probs=185.5
Q ss_pred eEEEEeEEEEcCCCC----------CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCC
Q 000846 344 EIEFRDVYFCYPSRP----------DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRR 413 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~----------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~ 413 (1255)
-|+++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 589999999996321 2469999999999999999999999999999999999999999999999999988
Q ss_pred CCHH---HHhcccEEeccCC--ccCc-ccHHHHhccCCC----CCCHHHHHHHHHHhchHHHHhcCCCccc-chhcCCCC
Q 000846 414 LHLK---WLRSQMGLVNQEP--VLFA-TSITENILFGKD----GASMDDVISAAKAANAHDFITKLPDGYE-TQVGQLGF 482 (1255)
Q Consensus 414 ~~~~---~~r~~i~~v~Q~~--~l~~-~ti~~ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~ 482 (1255)
.+.. .+|++|+||+|+| .+++ .||.|||.++.. ..+.++..+. +.+.++.+ |++ ........
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~-----~~~~l~~v--gl~~~~~~~~p~ 160 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDR-----VKAMMLKV--GLLPNLINRYPH 160 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHc--CCChHHhcCCcc
Confidence 7654 3678999999999 4774 599999975321 1232322221 12334433 442 24566778
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 000846 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKV 559 (1255)
Q Consensus 483 ~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i 559 (1255)
+|||||||||+|||||+.+|++||+||||++||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998753 8999999999999965 999999999999
Q ss_pred EEecChhHHhccC
Q 000846 560 VESGSHNELMNRG 572 (1255)
Q Consensus 560 ~~~g~~~~l~~~~ 572 (1255)
++.|+++++..++
T Consensus 241 ve~g~~~~i~~~~ 253 (331)
T PRK15079 241 VELGTYDEVYHNP 253 (331)
T ss_pred EEEcCHHHHHcCC
Confidence 9999999998753
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=390.59 Aligned_cols=217 Identities=29% Similarity=0.482 Sum_probs=184.2
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999876543 4679
Q ss_pred EEeccCCccCcc-cHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhcc
Q 000846 424 GLVNQEPVLFAT-SITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIR 500 (1255)
Q Consensus 424 ~~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~ 500 (1255)
+||+|++.+|.. ||+||+.|+.. ....++.. ..+.+.++.+ |++........+||||||||++|||||+.
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~-----~~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEIN-----QRVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 99999998643 11222111 1122334444 55555566667999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhccC
Q 000846 501 DPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNRG 572 (1255)
Q Consensus 501 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~ 572 (1255)
+|++||||||||+||+.+++.+.+.|+++.+ |.|+|+|||+++.+. .||+|++|++|++++.|+++++...+
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p 225 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999988743 899999999999875 59999999999999999999997653
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=377.18 Aligned_cols=215 Identities=33% Similarity=0.539 Sum_probs=184.9
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.++++||+++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999642 24699999999999999999999999999999999999999999999999999888777788899
Q ss_pred EEeccCC--ccCcccHHHHhccCCCC--CCHH----HHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHH
Q 000846 424 GLVNQEP--VLFATSITENILFGKDG--ASMD----DVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIA 495 (1255)
Q Consensus 424 ~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lA 495 (1255)
+|++|+| .+++.||+|||.++... ...+ ++.++++.. |++..+.....+||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQV-----------GMEDFLNREPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHc-----------CChhhhhCCcccCCHHHHHHHHHH
Confidence 9999998 45667999999876321 1222 233333333 444444555569999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhc
Q 000846 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 496 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
|||+.+|++|||||||++||+.+...+.+.|+++.+ |+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999998753 799999999999988899999999999999999998865
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=368.61 Aligned_cols=215 Identities=30% Similarity=0.502 Sum_probs=180.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
|+++||++.|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 4789999999742 146999999999999999999999999999999999999999999999999986543 56678899
Q ss_pred EeccCCccCc-ccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccC
Q 000846 425 LVNQEPVLFA-TSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501 (1255)
Q Consensus 425 ~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~ 501 (1255)
|++|++.++. .|++||+.++.. ....++.. ..+.+.++.+ |++........+||||||||++||||++.+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIK-----EEVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 9999999984 699999986421 11111111 1123334443 444444555679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 000846 502 PKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 502 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l 568 (1255)
|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999999999998877899999999999986 5999999999999999998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=372.85 Aligned_cols=223 Identities=30% Similarity=0.520 Sum_probs=189.4
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCeecCC--CCHH
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDIRN--YNLK 1081 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~~ 1081 (1255)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||.++.. .+..
T Consensus 4 l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 4 IEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 789999999963 469999999999999999999999999999999999975 489999999999875 3456
Q ss_pred HHhcceEEEccCCCCCcccHHHHHhcCCC--CC-C----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHH
Q 000846 1082 QLRSHIALVSQEPTLFAGTIRENIAYGKA--DA-R----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQ 1154 (1255)
Q Consensus 1082 ~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~~-~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQ 1154 (1255)
.+|++++|+||+|.+|.+|++||+.++.. .. + ++++.++++.+++.+++.. .....+.+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHHH
Confidence 78999999999999999999999986521 11 1 2334555666666554432 134456789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHH
Q 000846 1155 RIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1155 rlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl 1233 (1255)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999998876 8999999999999999999997
Q ss_pred hhhcCchhH
Q 000846 1234 ALSRGGAYY 1242 (1255)
Q Consensus 1234 ~~~~~g~y~ 1242 (1255)
.. +.+.|.
T Consensus 234 ~~-~~~~~~ 241 (250)
T PRK14266 234 IN-PKDKRT 241 (250)
T ss_pred hC-CCChHH
Confidence 64 444443
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=375.67 Aligned_cols=216 Identities=31% Similarity=0.491 Sum_probs=185.3
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999743 24599999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCC--CCcccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHH
Q 000846 1088 ALVSQEPT--LFAGTIRENIAYGKA--DARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALA 1159 (1255)
Q Consensus 1088 ~~V~Qdp~--LF~gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalA 1159 (1255)
+|+||+|. ++..|+++|+.++.. .... +++.++++..++.++ ......+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLER-----------ADYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCCcccCCHHHHHHHHHH
Confidence 99999994 456689999987532 1122 233344444443322 2344578999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1160 RAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1160 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
||++.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 7899999999999988999999999999999999998753
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=371.58 Aligned_cols=216 Identities=27% Similarity=0.493 Sum_probs=181.0
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecC------CCCHHH
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIR------NYNLKQ 1082 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~------~i~~~~ 1082 (1255)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999963 36999999999999999999999999999999999999999999999999873 123456
Q ss_pred HhcceEEEccCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHH
Q 000846 1083 LRSHIALVSQEPTLFAG-TIRENIAYGKA---DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIAL 1158 (1255)
Q Consensus 1083 lR~~i~~V~Qdp~LF~g-TIreNl~~g~~---~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlal 1158 (1255)
+|++|+|+||+|.+|.+ |++||+.++.. ....++.. ..+.+++..+ |++........+||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHH
Confidence 78899999999999975 99999964211 11222211 1223334333 44444555567899999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000846 1159 ARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1159 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
|||++++|+||||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.+ ||++++|++|++++.|+++++.+
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 999999999999999999999999999999999875 48999999999999865 99999999999999999999864
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=388.31 Aligned_cols=208 Identities=30% Similarity=0.498 Sum_probs=175.4
Q ss_pred CccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCe----ecCCCCHHHHh----cceEEEccCCC
Q 000846 1024 QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQ----DIRNYNLKQLR----SHIALVSQEPT 1095 (1255)
Q Consensus 1024 ~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~----di~~i~~~~lR----~~i~~V~Qdp~ 1095 (1255)
..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. ++...+...+| ++|+||||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35899999999999999999999999999999999999999999999996 67777665543 58999999999
Q ss_pred CCc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 000846 1096 LFA-GTIRENIAYGKA--DARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSI 1168 (1255)
Q Consensus 1096 LF~-gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~I 1168 (1255)
+|. .|++||+.++.. ..+. +...++++..++.++. .....+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~-----------~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWA-----------DKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 799999987632 1122 2344555555554432 334457999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHHhhhcCchhHH
Q 000846 1169 LLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVALSRGGAYYS 1243 (1255)
Q Consensus 1169 LlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y~~ 1243 (1255)
||||||||+||+.+.+.+++.|.+..+ ++|+|+|||+++.+. .||+|++|++|++++.|++++++.. +.+.|.+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~-p~~~~~~ 262 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN-PANDYVA 262 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC-cchHHHH
Confidence 999999999999999999999998753 799999999999974 5999999999999999999999875 4444443
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=343.44 Aligned_cols=220 Identities=29% Similarity=0.459 Sum_probs=192.5
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHH-HHhcc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLK-WLRSQ 422 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~ 422 (1255)
-++++|++..|+. ..+|++|||++++||+++|+||||+||||++++|+|+.+|.+|+|.++|+|++..+++ ..|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4789999999974 4699999999999999999999999999999999999999999999999999999875 46778
Q ss_pred cEEeccCCccCcc-cHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccC
Q 000846 423 MGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501 (1255)
Q Consensus 423 i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~ 501 (1255)
|+||||.-.+|+. ||+||+.+|....+.++. .....++..+-+| -+....+.++.+|||||+|-+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999987 999999987532222111 1111344455667 577788899999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhcc
Q 000846 502 PKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 502 ~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~-~~~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
|++|+|||||.+|-|.-.+.|.+.|+++++ |.||++|.++.... +.+||.+||++|+|+.+|+.+||.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999874 67999999999986 56999999999999999999999874
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=374.92 Aligned_cols=230 Identities=26% Similarity=0.410 Sum_probs=189.3
Q ss_pred cEEEEEEEEECCCC------CCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHH
Q 000846 1008 RIELKNVFFAYPTR------PDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLK 1081 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~------~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~ 1081 (1255)
-|+++||+++|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999631 124699999999999999999999999999999999999999999999999999766666
Q ss_pred HHhcceEEEccCCC--CCc-ccHHHHHhcCCC---CCC----HHHHHHHHHHhcHH-HHHHccccccccccCCCCCCCCh
Q 000846 1082 QLRSHIALVSQEPT--LFA-GTIRENIAYGKA---DAR----ESEIKKAAVLANAH-EFISGMKDGYDTYCGERGVQLSG 1150 (1255)
Q Consensus 1082 ~lR~~i~~V~Qdp~--LF~-gTIreNl~~g~~---~~~----~~ei~~al~~a~l~-~~i~~lp~gldt~vge~G~~LSg 1150 (1255)
..+++++|+||+|. ++. -|+.+|+.++.. ... ++++.++++..++. +. .+ ....+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDH-------AS----YYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH-------Hh----cCchhcCH
Confidence 66788999999985 444 389999864211 111 23445555555552 22 12 23467999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000846 1151 GQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227 (1255)
Q Consensus 1151 GQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1227 (1255)
|||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999875 37899999999999986 9999999999999999
Q ss_pred CHHHHHhhhcCchhHHHHhhh
Q 000846 1228 SHNELVALSRGGAYYSLIKPQ 1248 (1255)
Q Consensus 1228 ~~~eLl~~~~~g~y~~l~~~~ 1248 (1255)
+++++.+......+++++...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGH 253 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhc
Confidence 999998753345667777643
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=378.06 Aligned_cols=216 Identities=31% Similarity=0.479 Sum_probs=178.2
Q ss_pred EEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHH----hc
Q 000846 346 EFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL----RS 421 (1255)
Q Consensus 346 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----r~ 421 (1255)
.++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45678888853 458999999999999999999999999999999999999999999999999987765433 46
Q ss_pred ccEEeccCCccCc-ccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHh
Q 000846 422 QMGLVNQEPVLFA-TSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARAL 498 (1255)
Q Consensus 422 ~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal 498 (1255)
+++|++|++.+|. .|++||+.++.. .....+.. ..+.+.++.+ |++........+||||||||++|||||
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAERE-----ERAAEALELV--GLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 8999999999985 599999987521 11111111 1112333333 444444555578999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhcc
Q 000846 499 IRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 499 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
+++|+||||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999998874 3799999999999875 5999999999999999999999764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=384.42 Aligned_cols=227 Identities=23% Similarity=0.334 Sum_probs=184.0
Q ss_pred EEEEEEEEECCCCCC-CccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC----CCCceEEECCeecCCCCHHHH
Q 000846 1009 IELKNVFFAYPTRPD-QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD----PLKGSVFMDEQDIRNYNLKQL 1083 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~-~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~----p~~G~I~idG~di~~i~~~~l 1083 (1255)
|+++|++++|+.+.. .++|+||||+|++||.+||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999974321 359999999999999999999999999999999999998 489999999999999887665
Q ss_pred hc----ceEEEccCCC--CCc-ccHHHHH----hcCCC---CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCC
Q 000846 1084 RS----HIALVSQEPT--LFA-GTIRENI----AYGKA---DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLS 1149 (1255)
Q Consensus 1084 R~----~i~~V~Qdp~--LF~-gTIreNl----~~g~~---~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 1149 (1255)
|+ +|+||||+|. ++. -|+.+|+ ..... ....+++.++++.+++.+.. ........+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhCC
Confidence 43 6999999995 443 3665554 32111 11123445555555543211 12345567899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEe
Q 000846 1150 GGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQ 1226 (1255)
Q Consensus 1150 gGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~ 1226 (1255)
||||||++|||||+.+|+|||+||||++||+.+...|.+.|+++.+ +.|+|+|||+++.+. .||||+||.+|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 789999999999985 5999999999999999
Q ss_pred cCHHHHHhhhcCchhHHH
Q 000846 1227 GSHNELVALSRGGAYYSL 1244 (1255)
Q Consensus 1227 G~~~eLl~~~~~g~y~~l 1244 (1255)
|+++++++. +...|.+.
T Consensus 236 g~~~~~~~~-p~hpyt~~ 252 (326)
T PRK11022 236 GKAHDIFRA-PRHPYTQA 252 (326)
T ss_pred CCHHHHhhC-CCChHHHH
Confidence 999999975 55566543
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=374.78 Aligned_cols=220 Identities=32% Similarity=0.514 Sum_probs=185.1
Q ss_pred cceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeecCC--C
Q 000846 342 RGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP-----VEGEVLLDGYKIRR--L 414 (1255)
Q Consensus 342 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~ 414 (1255)
.+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999973 3599999999999999999999999999999999999975 89999999999864 3
Q ss_pred CHHHHhcccEEeccCCccCcccHHHHhccCCC--CC--CH----HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCCh
Q 000846 415 HLKWLRSQMGLVNQEPVLFATSITENILFGKD--GA--SM----DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSG 486 (1255)
Q Consensus 415 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 486 (1255)
+...+|+.++|++|+|.+|+.|++||+.++.. .. .. +++.++++..++.+.+ .+..+..+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-------KDRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCH
Confidence 45567889999999999998899999987531 10 11 1223333333332211 2345667789999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecCh
Q 000846 487 GQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSH 565 (1255)
Q Consensus 487 Gqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~ 565 (1255)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999998877889999999999985 5999999999999999999
Q ss_pred hHHhcc
Q 000846 566 NELMNR 571 (1255)
Q Consensus 566 ~~l~~~ 571 (1255)
+++...
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 998754
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=384.73 Aligned_cols=228 Identities=24% Similarity=0.364 Sum_probs=186.6
Q ss_pred cEEEEEEEEECCCCC-CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCeecCCCCHHHH
Q 000846 1008 RIELKNVFFAYPTRP-DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL---KGSVFMDEQDIRNYNLKQL 1083 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~-~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~idG~di~~i~~~~l 1083 (1255)
.++++|++++|+.+. ..++|+||||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.|+..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996421 246999999999999999999999999999999999999996 9999999999999887765
Q ss_pred h----cceEEEccCC--CCCc-ccHHHHHhcCC---CCCCHHHH----HHHHHHhcHHHHHHccccccccccCCCCCCCC
Q 000846 1084 R----SHIALVSQEP--TLFA-GTIRENIAYGK---ADARESEI----KKAAVLANAHEFISGMKDGYDTYCGERGVQLS 1149 (1255)
Q Consensus 1084 R----~~i~~V~Qdp--~LF~-gTIreNl~~g~---~~~~~~ei----~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 1149 (1255)
| ++|+|||||| .++. .|+.+|+.... ...+.++. .+.++.+ .+|++.+ .++..+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~v-------gL~~~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAV-------KMPEARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-------CCCChHH-HhcCCcccCC
Confidence 3 4799999999 4554 57888774221 11222222 2222222 2343322 2466778999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEe
Q 000846 1150 GGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQ 1226 (1255)
Q Consensus 1150 gGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~ 1226 (1255)
||||||++|||||+.+|+|||+|||||+||+.+...|.+.|+++.+ +.|+|+|||+++.+. .||+|+||.+|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998754 789999999999996 4999999999999999
Q ss_pred cCHHHHHhhhcCchhHHH
Q 000846 1227 GSHNELVALSRGGAYYSL 1244 (1255)
Q Consensus 1227 G~~~eLl~~~~~g~y~~l 1244 (1255)
|+++++++. +...|.+.
T Consensus 244 g~~~~i~~~-p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQ-PSHPYSIG 260 (330)
T ss_pred CCHHHHHhC-CCCHHHHH
Confidence 999999985 56666663
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=366.07 Aligned_cols=202 Identities=32% Similarity=0.480 Sum_probs=171.6
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCH---HHHhc
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNL---KQLRS 1085 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR~ 1085 (1255)
|+++|++++|+++ +++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999642 369999999999999999999999999999999999999999999999999987754 34788
Q ss_pred ceEEEccCCCCCc-ccHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHH
Q 000846 1086 HIALVSQEPTLFA-GTIRENIAYGKA--DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIAL 1158 (1255)
Q Consensus 1086 ~i~~V~Qdp~LF~-gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlal 1158 (1255)
+++||||+|.+|. .|++||+.++.. ..+ ++++.++++..++.+.. .....+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKH-----------RALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCChhhcCHHHHHHHHH
Confidence 9999999999987 599999986521 112 22344445554544332 23345799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 000846 1159 ARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRV 1223 (1255)
Q Consensus 1159 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~i 1223 (1255)
||||+++|+||||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 58999999999999976 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=376.93 Aligned_cols=213 Identities=30% Similarity=0.534 Sum_probs=180.7
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecC--CCCHHHHhcc
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIR--NYNLKQLRSH 1086 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~~~~lR~~ 1086 (1255)
|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999963 46999999999999999999999999999999999999999999999999985 3445678899
Q ss_pred eEEEccCCC--CCcccHHHHHhcCCC--CCCHH----HHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHH
Q 000846 1087 IALVSQEPT--LFAGTIRENIAYGKA--DARES----EIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIAL 1158 (1255)
Q Consensus 1087 i~~V~Qdp~--LF~gTIreNl~~g~~--~~~~~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlal 1158 (1255)
|+||||+|. +|..|+.+|+.++.. ..+.+ ++.++++..++.++ ......+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF-----------RHQPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhH-----------hcCCchhCCHHHHHHHHH
Confidence 999999985 677899999976421 12222 23344444444333 223456899999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1159 ARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1159 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
||||+.+|+||||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||++++|++|++++.|++++++..
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999875 47899999999999855 999999999999999999998753
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=371.90 Aligned_cols=212 Identities=30% Similarity=0.483 Sum_probs=183.9
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...++++++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCCC-CcccHHHHHhcCCC-C-C----CHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHH
Q 000846 1089 LVSQEPTL-FAGTIRENIAYGKA-D-A----RESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161 (1255)
Q Consensus 1089 ~V~Qdp~L-F~gTIreNl~~g~~-~-~----~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARA 1161 (1255)
|+||++.+ +..|++||+.++.. . . .++.+.++++..++.++ .......||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHL-----------AGRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHH
Confidence 99999987 67899999987532 1 1 12234444554444332 333456899999999999999
Q ss_pred Hc------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHH
Q 000846 1162 IL------KNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1162 Ll------r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
|+ ++|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999875 4789999999999986 5999999999999999999998
Q ss_pred Hh
Q 000846 1233 VA 1234 (1255)
Q Consensus 1233 l~ 1234 (1255)
.+
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 75
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=369.59 Aligned_cols=211 Identities=36% Similarity=0.549 Sum_probs=181.8
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++|++++|+. .++++|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 578999999963 369999999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC------CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHH
Q 000846 1089 LVSQEPTLFAG-TIRENIAYGKA------DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161 (1255)
Q Consensus 1089 ~V~Qdp~LF~g-TIreNl~~g~~------~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARA 1161 (1255)
|+||++.+|.+ |++||+.++.. ...++++.++++..++.++. .....+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYA-----------NRKPSQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHH
Confidence 99999999975 99999976421 11123444555555554443 33446899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1162 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999998763 8999999999999865 899999999999999999999764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=368.33 Aligned_cols=216 Identities=29% Similarity=0.507 Sum_probs=185.3
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999963 45999999999999999999999999999999999999999999999999987766544 45899
Q ss_pred EeccCCccC-cccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccC
Q 000846 425 LVNQEPVLF-ATSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501 (1255)
Q Consensus 425 ~v~Q~~~l~-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~ 501 (1255)
|++|++.++ ..|++||+.++.. ....++.. ..+.++++.+ |++........+||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999885 5699999986532 11221111 1234555555 777777788889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhcc
Q 000846 502 PKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 502 ~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
|+++||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999875 48999999999999877999999999999999999988753
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=374.86 Aligned_cols=221 Identities=29% Similarity=0.497 Sum_probs=188.7
Q ss_pred ccccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CCceEEECCeecC---
Q 000846 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP-----LKGSVFMDEQDIR--- 1076 (1255)
Q Consensus 1005 ~~g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~--- 1076 (1255)
..+.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 13 ~~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 13 TQQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 3567999999999963 3699999999999999999999999999999999999975 7999999998874
Q ss_pred -CCCHHHHhcceEEEccCCCCCcccHHHHHhcCCC--C-----CCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCC
Q 000846 1077 -NYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKA--D-----ARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQL 1148 (1255)
Q Consensus 1077 -~i~~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~-----~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 1148 (1255)
..+...+|++|+|+||++.+|.+|++||+.++.. . ..++++.++++.+++.+. +....+.....|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~L 162 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE-------VKDRLGDLAFNL 162 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchh-------hhHHHhCCcccC
Confidence 3345678899999999999999999999986521 1 113455556655554332 223345567789
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000846 1149 SGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227 (1255)
Q Consensus 1149 SgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1227 (1255)
|||||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999998778999999999999965 9999999999999999
Q ss_pred CHHHHHhh
Q 000846 1228 SHNELVAL 1235 (1255)
Q Consensus 1228 ~~~eLl~~ 1235 (1255)
+++++...
T Consensus 243 ~~~~~~~~ 250 (265)
T PRK14252 243 ATDTIFIK 250 (265)
T ss_pred CHHHHHhC
Confidence 99999754
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=381.35 Aligned_cols=217 Identities=29% Similarity=0.462 Sum_probs=180.7
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999998764 35678999
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 000846 1088 ALVSQEPTLFA-GTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILK 1164 (1255)
Q Consensus 1088 ~~V~Qdp~LF~-gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr 1164 (1255)
+|+||++.+|. .|++||+.+... ..+..+..+.++ .+.+.. .+++.+++. ..+||||||||++|||||++
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~ll~~~-~l~~~~~~~----~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP--SLLEFA-RLESKADVR----VALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHC-CChhHhcCc----hhhCCHHHHHHHHHHHHHhc
Confidence 99999999885 699999974211 123333322211 111111 233334444 45799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1165 NPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1165 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
+|++|||||||++||+.+.+.+.+.|++.. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999874 58899999999999865 999999999999999999999753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=363.83 Aligned_cols=210 Identities=30% Similarity=0.485 Sum_probs=186.9
Q ss_pred EEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCH----HHHhc
Q 000846 1010 ELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNL----KQLRS 1085 (1255)
Q Consensus 1010 ~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~----~~lR~ 1085 (1255)
.+.|++|+|+.+ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 567999999743 469999999999999999999999999999999999999999999999998876542 34577
Q ss_pred ceEEEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 000846 1086 HIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKN 1165 (1255)
Q Consensus 1086 ~i~~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~ 1165 (1255)
.++|++|+|.+|+.|++||+.++.+ ..+++..++++..++.+++..+|.|+++.++....+||||||||++||||++++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999988653 345667788888898888898999999999988999999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHH--HHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCE
Q 000846 1166 PSILLLDEATSALDSVSESLVQE--ALEKMM-MGRTCVVVAHRLSTIQKSDTIAVIKNGR 1222 (1255)
Q Consensus 1166 p~ILlLDEaTSaLD~~te~~I~~--~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ 1222 (1255)
|++|||||||++||+.+...+.+ .++... .+.|+|++||+++.+..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999998887 444443 3789999999999998999999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=373.41 Aligned_cols=220 Identities=22% Similarity=0.425 Sum_probs=184.9
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHH-hcc
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL-RSH 1086 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l-R~~ 1086 (1255)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999988876554 456
Q ss_pred eEEEccCCCCCcc-cHHHHHhcCCCCCC--------------HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChH
Q 000846 1087 IALVSQEPTLFAG-TIRENIAYGKADAR--------------ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGG 1151 (1255)
Q Consensus 1087 i~~V~Qdp~LF~g-TIreNl~~g~~~~~--------------~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 1151 (1255)
++|+||+|.+|.+ |++||+.++..... ..+..+ ....+.++++.+ |++........+||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~--gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE--ALDRAATWLERV--GLLEHANRQAGNLAYG 157 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhH--HHHHHHHHHHhC--ChhhhhhCChhhCCHH
Confidence 9999999999985 99999987531100 000000 111233444443 5555566677889999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 000846 1152 QKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGS 1228 (1255)
Q Consensus 1152 QkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~ 1228 (1255)
||||++||||++.+|+||||||||++||+.+.+.+.+.|.+..+ ++|+|++||+++.+.+ ||++++|++|++++.|+
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999998753 7899999999999865 99999999999999999
Q ss_pred HHHHHh
Q 000846 1229 HNELVA 1234 (1255)
Q Consensus 1229 ~~eLl~ 1234 (1255)
++++..
T Consensus 238 ~~~~~~ 243 (255)
T PRK11300 238 PEEIRN 243 (255)
T ss_pred HHHHhh
Confidence 999865
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=369.90 Aligned_cols=216 Identities=28% Similarity=0.466 Sum_probs=185.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHH-Hhccc
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW-LRSQM 423 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 423 (1255)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999963 35999999999999999999999999999999999999999999999999988776544 45689
Q ss_pred EEeccCCccCcc-cHHHHhccCCCC--CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhcc
Q 000846 424 GLVNQEPVLFAT-SITENILFGKDG--ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIR 500 (1255)
Q Consensus 424 ~~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~ 500 (1255)
+|++|++.+|.+ |++||+.++.+. ...++. ...+.+.++.+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKER-----EEKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999987 999999875321 111111 11234555555 67767778888999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 501 DPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 501 ~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998875 4899999999998775 599999999999999999988754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=373.59 Aligned_cols=218 Identities=31% Similarity=0.505 Sum_probs=183.5
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CCceEEECCeecCC--CCH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP-----LKGSVFMDEQDIRN--YNL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~~ 1080 (1255)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999974 69999999999853 445
Q ss_pred HHHhcceEEEccCCCCCc-ccHHHHHhcCCC---CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHH
Q 000846 1081 KQLRSHIALVSQEPTLFA-GTIRENIAYGKA---DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQ 1152 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~-gTIreNl~~g~~---~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 1152 (1255)
..+|+.++|++|++.+|. .|++||+.++.. ..+ ++.+.++++..++.+++ +........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHH
Confidence 678899999999999987 599999976421 111 22334445555443222 223345567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEe------CCEEEE
Q 000846 1153 KQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQ-KSDTIAVIK------NGRVVE 1225 (1255)
Q Consensus 1153 kQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~Vl~------~G~ive 1225 (1255)
|||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999999999877799999999999986 599999996 899999
Q ss_pred ecCHHHHHhh
Q 000846 1226 QGSHNELVAL 1235 (1255)
Q Consensus 1226 ~G~~~eLl~~ 1235 (1255)
.|++++++..
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999999764
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=371.59 Aligned_cols=218 Identities=32% Similarity=0.530 Sum_probs=185.7
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CCceEEECCeecC-CCCHH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP-----LKGSVFMDEQDIR-NYNLK 1081 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~-~i~~~ 1081 (1255)
.++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999963 4699999999999999999999999999999999999986 5999999999985 45667
Q ss_pred HHhcceEEEccCCCCCcccHHHHHhcCCC--CCC-H----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHH
Q 000846 1082 QLRSHIALVSQEPTLFAGTIRENIAYGKA--DAR-E----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQ 1154 (1255)
Q Consensus 1082 ~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~~~-~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQ 1154 (1255)
.+|+.++|+||+|.+|..|++||+.++.. ... + +++.++++..++.+.+ .........+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHH
Confidence 78999999999999999999999987532 111 1 2333444444443322 22334456789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHH
Q 000846 1155 RIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1155 rlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl 1233 (1255)
|++|||||+.+|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999876 9999999999999999999987
Q ss_pred hh
Q 000846 1234 AL 1235 (1255)
Q Consensus 1234 ~~ 1235 (1255)
..
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 53
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=381.94 Aligned_cols=218 Identities=29% Similarity=0.484 Sum_probs=182.7
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcc
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ 422 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 422 (1255)
..|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+ ...|++
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 36999999999963 46999999999999999999999999999999999999999999999999987654 457889
Q ss_pred cEEeccCCccCc-ccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhc
Q 000846 423 MGLVNQEPVLFA-TSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALI 499 (1255)
Q Consensus 423 i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~ 499 (1255)
||||||++.++. .|++||+.+... .....+..+. +.+.++.+ |+.........+||||||||++|||||+
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL-----VPPLLEFA--KLENKADAKVGELSGGMKRRLTLARALV 154 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchHhcCchhhCCHHHHHHHHHHHHHh
Confidence 999999999986 599999985321 1122222111 12333332 3433344455689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhcc
Q 000846 500 RDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 500 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
.+|++|+|||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999885 48999999999999865 999999999999999999998653
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=367.73 Aligned_cols=211 Identities=32% Similarity=0.475 Sum_probs=180.3
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++|++++|+. +++|+|+||+|.+||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 578999999963 369999999999999999999999999999999999999999999999999986653 478899
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHH
Q 000846 1089 LVSQEPTLFAG-TIRENIAYGKA--DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161 (1255)
Q Consensus 1089 ~V~Qdp~LF~g-TIreNl~~g~~--~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARA 1161 (1255)
|+||+|.+|.+ |++||+.++.. ..+ ++++.++++..++.++ ......+||+||+||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGL-----------GDRYPNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhCChhhCCHHHHHHHHHHHH
Confidence 99999999975 99999986532 111 2233344444443332 233446899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1162 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
++++|+++||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999998754 7999999999999865 999999999999999999999753
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=369.89 Aligned_cols=217 Identities=32% Similarity=0.573 Sum_probs=185.9
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCC--CHHHHhcc
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL--HLKWLRSQ 422 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~--~~~~~r~~ 422 (1255)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 4599999999999999999999999999999999999999999999999998764 34567889
Q ss_pred cEEeccCCccCc-ccHHHHhccCCC---CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHh
Q 000846 423 MGLVNQEPVLFA-TSITENILFGKD---GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARAL 498 (1255)
Q Consensus 423 i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal 498 (1255)
++|++|++.++. .|++||+.++.. ....++.. ..+.+.++.+ |++.........||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAE-----KQARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHH-----HHHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999999886 599999987531 11122211 1223455555 676667777789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhcc
Q 000846 499 IRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 499 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
+.+|++++|||||++||++++..+.+.|+++. +|+|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999998875 4899999999999986 4999999999999999999998764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=374.81 Aligned_cols=216 Identities=30% Similarity=0.515 Sum_probs=185.2
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++||+++|++....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334699999999999999999999999999999999999999999999999999877777788999
Q ss_pred EEeccCCc--cCcccHHHHhccCCC--CCCHHHH----HHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHH
Q 000846 424 GLVNQEPV--LFATSITENILFGKD--GASMDDV----ISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIA 495 (1255)
Q Consensus 424 ~~v~Q~~~--l~~~ti~~ni~~~~~--~~~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lA 495 (1255)
+|++|+|. ++..|+.|||.++.. ....++. .++++.. |+..........||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAV-----------NMLDFKTREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHC-----------CCHhHhhCCcccCCHHHHHHHHHH
Confidence 99999984 567799999987532 2223222 2333333 333334455679999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhc
Q 000846 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 496 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
|||+++|++|||||||++||+.+.+.+.+.|+++.+ |+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999998853 899999999999988899999999999999999999875
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=388.13 Aligned_cols=218 Identities=27% Similarity=0.472 Sum_probs=185.5
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcc
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ 422 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 422 (1255)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+||+++.+.++ .++.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999963 359999999999999999999999999999999999999999999999999987654 4678
Q ss_pred cEEeccCCccCcc-cHHHHhccCCCC--CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhc
Q 000846 423 MGLVNQEPVLFAT-SITENILFGKDG--ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALI 499 (1255)
Q Consensus 423 i~~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~ 499 (1255)
||||+|++.+|+. ||+|||.|+... ....+..+ .+.+.++.+ |+.........+|||||||||+|||||+
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL~ 165 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLA 165 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 9999999999976 999999987431 12222211 122334444 5555556667799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhccC
Q 000846 500 RDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNRG 572 (1255)
Q Consensus 500 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~ 572 (1255)
.+|++||||||||+||+.+++.+.+.|+++. .|.|+|+|||+++.+. .||+|++|++|++++.|+++++..++
T Consensus 166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999998887763 3799999999999874 59999999999999999999998764
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=376.21 Aligned_cols=218 Identities=30% Similarity=0.534 Sum_probs=184.9
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecC--CCCHHHHhc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIR--RLHLKWLRS 421 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~r~ 421 (1255)
.|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 5899999999963 246999999999999999999999999999999999999999999999999984 334567888
Q ss_pred ccEEeccCC--ccCcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHH
Q 000846 422 QMGLVNQEP--VLFATSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARA 497 (1255)
Q Consensus 422 ~i~~v~Q~~--~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARa 497 (1255)
.++|++|+| .+++.|++||+.++.. ..+.++..+. +.+.++.+ |+.......+.+||||||||++||||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHC--CChhhhhCCcccCCHHHHHHHHHHHH
Confidence 999999998 5778899999987532 1122222111 12333433 55555667788999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 498 LIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 498 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
|+.+|++|||||||++||+.+...+.+.|+++.+ |+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999988753 899999999999986 599999999999999999999865
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=374.01 Aligned_cols=214 Identities=29% Similarity=0.488 Sum_probs=186.1
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcc
Q 000846 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086 (1255)
Q Consensus 1007 g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1086 (1255)
..|+++||+++|++ .++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...++++
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 35999999999963 469999999999999999999999999999999999999999999999999998888888899
Q ss_pred eEEEccCCCCCc-ccHHHHHhcCC-CC---------CCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHH
Q 000846 1087 IALVSQEPTLFA-GTIRENIAYGK-AD---------ARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQR 1155 (1255)
Q Consensus 1087 i~~V~Qdp~LF~-gTIreNl~~g~-~~---------~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQr 1155 (1255)
|+|+||++.+|. .|++||+.++. +. ..++.+.++++..++.++ ......+||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCChHHHHH
Confidence 999999998875 69999998752 11 112244555555555443 334457899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1156 IALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1156 lalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
++||||++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998753 7899999999998855 999999999999999999998
Q ss_pred Hh
Q 000846 1233 VA 1234 (1255)
Q Consensus 1233 l~ 1234 (1255)
+.
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 65
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=366.23 Aligned_cols=214 Identities=26% Similarity=0.467 Sum_probs=180.4
Q ss_pred eEEEEeEEEEcCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHH---H
Q 000846 344 EIEFRDVYFCYPSRP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW---L 419 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 419 (1255)
.++++||+++|+.+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997422 146999999999999999999999999999999999999999999999999998877543 3
Q ss_pred h-cccEEeccCCccCcc-cHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHH
Q 000846 420 R-SQMGLVNQEPVLFAT-SITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIA 495 (1255)
Q Consensus 420 r-~~i~~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lA 495 (1255)
+ +.++|++|++.+|.. |++||+.++.. ....++.. ..+.+.++.+ |++........+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN-----SRALEMLAAV--GLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence 3 679999999999876 99999987421 11122111 1223444444 666666777789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 000846 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGS 564 (1255)
Q Consensus 496 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~ 564 (1255)
||++.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+..+|++++|++|++++.|+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999874 4899999999999998889999999999998875
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=379.55 Aligned_cols=216 Identities=25% Similarity=0.446 Sum_probs=184.5
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
++++|++++|+ +..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. +...+|++++
T Consensus 3 l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 78999999996 3469999999999999999999999999999999999999999999999999977 4467889999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 000846 1089 LVSQEPTLFAG-TIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKN 1165 (1255)
Q Consensus 1089 ~V~Qdp~LF~g-TIreNl~~g~~--~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~ 1165 (1255)
|+||+|.+|.+ |++||+.+... ..+.++..+ .+++.+..+ |++........+||||||||++|||||+++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999876 99999975321 112222111 122233333 444445556678999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1166 PSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1166 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
|++|||||||++||+.+.+.+++.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999998778999999999999876 999999999999999999999763
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=367.64 Aligned_cols=208 Identities=33% Similarity=0.524 Sum_probs=175.1
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHH----HH
Q 000846 345 IEFRDVYFCYPSRP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLK----WL 419 (1255)
Q Consensus 345 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~----~~ 419 (1255)
|+++||+++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996421 14699999999999999999999999999999999999999999999999998876532 24
Q ss_pred hcccEEeccCCccCcc-cHHHHhccCCCC--CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHH
Q 000846 420 RSQMGLVNQEPVLFAT-SITENILFGKDG--ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIAR 496 (1255)
Q Consensus 420 r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lAR 496 (1255)
+++++|++|++.+|.. |++||+.++... ....+. ...+.+.++.+ |++........+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 6789999999999986 999999875421 111111 11234455555 6666667777899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEE
Q 000846 497 ALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKV 559 (1255)
Q Consensus 497 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i 559 (1255)
||+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+..||++++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998754 8999999999998888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=376.14 Aligned_cols=225 Identities=29% Similarity=0.440 Sum_probs=186.0
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCeecCCC--CH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDIRNY--NL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~i--~~ 1080 (1255)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +.
T Consensus 39 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 39 HVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 5899999999963 359999999999999999999999999999999999864 4999999999998643 33
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC--CC-C----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHH
Q 000846 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKA--DA-R----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~~-~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQk 1153 (1255)
..+|++++||||+|.+|..|++||+.++.. .. + ++++.++++..++.+.+ + .........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~----~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV---S----DRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch---h----hHhhCChhhCCHHHH
Confidence 457889999999999998999999987531 11 1 12334444444432221 1 123445678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1154 QrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
||++|||||+.+|++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+.+ ||+|++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999865 999999999999999999999
Q ss_pred HhhhcCchhHH
Q 000846 1233 VALSRGGAYYS 1243 (1255)
Q Consensus 1233 l~~~~~g~y~~ 1243 (1255)
.+. +...|.+
T Consensus 269 ~~~-~~~~~~~ 278 (286)
T PRK14275 269 FTN-PKDRMTE 278 (286)
T ss_pred HhC-CCcHHHH
Confidence 864 3333433
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=365.79 Aligned_cols=198 Identities=28% Similarity=0.488 Sum_probs=167.5
Q ss_pred EEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceEE
Q 000846 1010 ELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIAL 1089 (1255)
Q Consensus 1010 ~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~ 1089 (1255)
+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999963 35999999999999999999999999999999999999999999999998874 46889999
Q ss_pred EccCCCC---CcccHHHHHhcCCCC----------CCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHH
Q 000846 1090 VSQEPTL---FAGTIRENIAYGKAD----------ARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRI 1156 (1255)
Q Consensus 1090 V~Qdp~L---F~gTIreNl~~g~~~----------~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrl 1156 (1255)
|||+|.+ |+.|++||+.++... ..++++.++++..++.++. .....+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELA-----------DRQIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHH-----------hCCcccCCHHHHHHH
Confidence 9999986 668999999875321 0123444555555554432 234567999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000846 1157 ALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227 (1255)
Q Consensus 1157 alARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1227 (1255)
+|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999875 67899999999999865 8999999886 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=335.93 Aligned_cols=219 Identities=28% Similarity=0.471 Sum_probs=186.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
+++.+++++|++ ...+++||||+++.||+++|.|||||||||+++.|..++.|++|.|++||.|.... +...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcc
Confidence 678999999985 34589999999999999999999999999999999999999999999999998664 456788999
Q ss_pred EeccCCccCcc-cHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 000846 425 LVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPK 503 (1255)
Q Consensus 425 ~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~ 503 (1255)
+++-+..|+.. |++|||.|... ...+...--.+...+..+.| +++.....+..++|-|+||||+|||||++||+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~---L~~l~~~~~kari~~l~k~l--~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFAR---LNGLSRKEIKARIAELSKRL--QLLEYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHH---HhhhhhhHHHHHHHHHHHHh--ChHHHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 99988888876 99999987432 11111111122333444445 66666667777999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhcc
Q 000846 504 ILLLDEATSALDAQSERIVQEAIDKVSK-GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 504 illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
+++||||||+||..+.+.+.+.+.+++. |++||+.||.++.++ .||+|+++++|+++..|+.+++..+
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999998865 999999999999997 5999999999999999999998753
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=382.01 Aligned_cols=217 Identities=29% Similarity=0.472 Sum_probs=182.0
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ...|++|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4999999999963 46999999999999999999999999999999999999999999999999997654 5678999
Q ss_pred EEEccCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 000846 1088 ALVSQEPTLF-AGTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILK 1164 (1255)
Q Consensus 1088 ~~V~Qdp~LF-~gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr 1164 (1255)
+|+||++.+| ..|++||+.+... ..+.++..+.++ .+.++ -.+++..++.+ .+||||||||++|||||+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~ll~~-~~L~~~~~~~~----~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIP--SLLEF-ARLESKADARV----SDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH--HHHHH-cCCchhhCCCh----hhCCHHHHHHHHHHHHHhc
Confidence 9999999986 5699999975321 122222222111 11111 13444444444 5799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1165 NPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1165 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
+|++|||||||++||+.+.+.+++.|++.. .|+|+|++||+++.+.+ ||+|++|++|++++.|+++++++.
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999875 48999999999999965 999999999999999999999763
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=367.35 Aligned_cols=232 Identities=27% Similarity=0.461 Sum_probs=197.9
Q ss_pred HHHHHHhcCCCCCCCCCcccccCCCccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhc
Q 000846 316 TRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 316 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g 395 (1255)
+.+.+.+..+++++.. .+.....+.|+++|+++.. .++|+|+||+|++||+++|+||||||||||+++|+|
T Consensus 15 ~~~~~~~~~~~~~~~~----~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~G 85 (282)
T cd03291 15 EGFGELLEKAKQENND----RKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG 85 (282)
T ss_pred HHHHHHHhcccccccc----cccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4555666555443221 2223344579999999952 359999999999999999999999999999999999
Q ss_pred ccCCCccEEEECCeecCCCCHHHHhcccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccc
Q 000846 396 FYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYET 475 (1255)
Q Consensus 396 ~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 475 (1255)
+++|++|+|.++| .|+|++|++.+|+.|++||+.++.. ....++.+.++..++.+.+..+|.++++
T Consensus 86 l~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 151 (282)
T cd03291 86 ELEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNT 151 (282)
T ss_pred CCCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 9999999999998 4999999999999999999998643 2233455666667888889999999999
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCCeEEEEecCchhhhhcCEEEEE
Q 000846 476 QVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAI-DKVSKGRTTLIIAHRLSTIRTANLIMVL 554 (1255)
Q Consensus 476 ~~~~~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~vl 554 (1255)
.+++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.+.+ +.+.+++|+|++||+++.+..||++++|
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l 231 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 231 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999888754 5666689999999999998889999999
Q ss_pred eCCEEEEecChhHHhc
Q 000846 555 KAGKVVESGSHNELMN 570 (1255)
Q Consensus 555 ~~G~i~~~g~~~~l~~ 570 (1255)
++|++++.|+++++..
T Consensus 232 ~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 232 HEGSSYFYGTFSELQS 247 (282)
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999875
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=349.99 Aligned_cols=172 Identities=42% Similarity=0.722 Sum_probs=162.6
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++|++++|+.. +.++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999742 246999999999999999999999999999999999999999999999999999998888999999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 000846 1089 LVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSI 1168 (1255)
Q Consensus 1089 ~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~I 1168 (1255)
|++|+|.+|++|++||+ ||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEE
Q 000846 1169 LLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQKSDTIAVIKNGRV 1223 (1255)
Q Consensus 1169 LlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~~G~i 1223 (1255)
|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||++++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999999875 48899999999999988999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=388.28 Aligned_cols=205 Identities=33% Similarity=0.539 Sum_probs=173.3
Q ss_pred ccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHH----hcccEEeccCCccCcc-
Q 000846 361 LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL----RSQMGLVNQEPVLFAT- 435 (1255)
Q Consensus 361 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~~- 435 (1255)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+...+ +++++||+|++.+|..
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999988776543 4689999999999975
Q ss_pred cHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 000846 436 SITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSA 513 (1255)
Q Consensus 436 ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~illlDEpts~ 513 (1255)
|++||+.++.. ....++.. ..+.+.++.+ |++........+||||||||++|||||+.+|++|||||||++
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~-----~~~~e~L~~~--gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~ 194 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERR-----EKALDALRQV--GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 99999997632 11111111 1122334444 555555566679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhccC
Q 000846 514 LDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNRG 572 (1255)
Q Consensus 514 lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~ 572 (1255)
||+.+++.+++.|.++. .|+|+|++||+++.+. .||+|++|++|++++.|+++++..++
T Consensus 195 LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 195 LDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCc
Confidence 99999999999998874 4899999999999875 59999999999999999999998753
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=371.64 Aligned_cols=225 Identities=29% Similarity=0.468 Sum_probs=185.3
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCC-----CceEEECCeecCC--CCH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL-----KGSVFMDEQDIRN--YNL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--i~~ 1080 (1255)
-|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3889999999963 46999999999999999999999999999999999999874 8999999999875 345
Q ss_pred HHHhcceEEEccCCCCCc-ccHHHHHhcCCC--CC-CHHHHHHH----HHHhcHHHHHHccccccccccCCCCCCCChHH
Q 000846 1081 KQLRSHIALVSQEPTLFA-GTIRENIAYGKA--DA-RESEIKKA----AVLANAHEFISGMKDGYDTYCGERGVQLSGGQ 1152 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~-gTIreNl~~g~~--~~-~~~ei~~a----l~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 1152 (1255)
..+|+.|+|+||+|.+|. .|++||+.++.. .. .+++..+. ++..++.+. +++.+++ ...+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~~~~----~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKDRLKT----PATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhhhhcC----CcccCCHHH
Confidence 577899999999999988 499999976431 11 23333222 222222221 2223343 456899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHH
Q 000846 1153 KQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNE 1231 (1255)
Q Consensus 1153 kQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~e 1231 (1255)
|||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.+ ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999876 89999999999999999999
Q ss_pred HHhhhcCchhHH
Q 000846 1232 LVALSRGGAYYS 1243 (1255)
Q Consensus 1232 Ll~~~~~g~y~~ 1243 (1255)
++.. +...|.+
T Consensus 234 ~~~~-~~~~~~~ 244 (252)
T PRK14272 234 LFTN-PRDERTE 244 (252)
T ss_pred HHhC-cCcHHHH
Confidence 9875 4444433
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=365.44 Aligned_cols=211 Identities=28% Similarity=0.496 Sum_probs=177.8
Q ss_pred EEEEeEEEEcCCCCC-CccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 345 IEFRDVYFCYPSRPD-TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
|+++||+++|++... .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ...++++++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974311 269999999999999999999999999999999999999999999999999875 345678899
Q ss_pred EEeccCCccCcc-cHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhcc
Q 000846 424 GLVNQEPVLFAT-SITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIR 500 (1255)
Q Consensus 424 ~~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~ 500 (1255)
+|++|+|.+|.. |++||+.+... ....++.. ..+.+.++.+ |++........+||||||||++||||++.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELT-----ARLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 999999999986 99999976421 11122211 1223445554 66666677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 000846 501 DPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESG 563 (1255)
Q Consensus 501 ~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g 563 (1255)
+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+. .||++++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999998874 4899999999999875 59999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=361.34 Aligned_cols=201 Identities=28% Similarity=0.488 Sum_probs=173.3
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++|++++|++ .. .|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .|++++
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 579999999963 22 39999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC-C-----CCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHH
Q 000846 1089 LVSQEPTLFAG-TIRENIAYGKA-D-----ARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161 (1255)
Q Consensus 1089 ~V~Qdp~LF~g-TIreNl~~g~~-~-----~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARA 1161 (1255)
|+||+|.+|.+ |++||+.++.. . .+++++.++++..++.++.... ..+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRL-----------PGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHHHHHH
Confidence 99999999975 99999986532 1 1234566666666665554433 35799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000846 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227 (1255)
Q Consensus 1162 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1227 (1255)
++++|++|||||||++||+++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999875 37899999999999966 9999999999998865
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=370.62 Aligned_cols=218 Identities=30% Similarity=0.449 Sum_probs=188.0
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CCceEEECCeecCCC--CH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP-----LKGSVFMDEQDIRNY--NL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~ 1080 (1255)
.+.+++++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 3889999999952 4699999999999999999999999999999999999987 799999999998643 44
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC-----CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHH
Q 000846 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKA-----DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQR 1155 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~-----~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQr 1155 (1255)
..+|++|+|+||+|.+|..|++||+.++.. ....+++.++++.+++.+.+.. ..++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 567889999999999999999999987632 1122456666766665444322 2345677899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEe--------CCEEEEe
Q 000846 1156 IALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIK--------NGRVVEQ 1226 (1255)
Q Consensus 1156 lalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~--------~G~ive~ 1226 (1255)
++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.+ ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999998778999999999998865 99999996 8999999
Q ss_pred cCHHHHHhh
Q 000846 1227 GSHNELVAL 1235 (1255)
Q Consensus 1227 G~~~eLl~~ 1235 (1255)
|+++++++.
T Consensus 238 g~~~~~~~~ 246 (261)
T PRK14263 238 GPTAQIFQN 246 (261)
T ss_pred CCHHHHHhC
Confidence 999999864
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=372.01 Aligned_cols=212 Identities=27% Similarity=0.451 Sum_probs=183.6
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEccCCC-CCcccHHHHHhcCCCC----------CCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHH
Q 000846 1089 LVSQEPT-LFAGTIRENIAYGKAD----------ARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIA 1157 (1255)
Q Consensus 1089 ~V~Qdp~-LF~gTIreNl~~g~~~----------~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrla 1157 (1255)
|+||++. .+..|++||+.++... ..++++.++++..++.+. .......||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL-----------ADRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHH
Confidence 9999995 4568999999875311 011234444444444332 33445689999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHHh
Q 000846 1158 LARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1158 lARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
||||++.+|+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999999875 4789999999999995 599999999999999999999865
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=368.51 Aligned_cols=218 Identities=32% Similarity=0.537 Sum_probs=184.9
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCC--------
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH-------- 415 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-------- 415 (1255)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3899999999973 35999999999999999999999999999999999999999999999999986532
Q ss_pred HHHHhcccEEeccCCccCc-ccHHHHhccCCC---CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHH
Q 000846 416 LKWLRSQMGLVNQEPVLFA-TSITENILFGKD---GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQR 491 (1255)
Q Consensus 416 ~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqr 491 (1255)
...++++++||+|++.+|. .|++||+.++.. ....++.. ..+.+.++.+ |++......+.+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEAT-----ARARELLAKV--GLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCcchhhCChhhCChHHHHH
Confidence 3456789999999999886 599999986421 11111111 1123445555 66655677788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000846 492 IAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELM 569 (1255)
Q Consensus 492 i~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 569 (1255)
++|||||+.+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998875 48999999999999864 9999999999999999999987
Q ss_pred cc
Q 000846 570 NR 571 (1255)
Q Consensus 570 ~~ 571 (1255)
+.
T Consensus 233 ~~ 234 (250)
T PRK11264 233 AD 234 (250)
T ss_pred cC
Confidence 64
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=376.00 Aligned_cols=213 Identities=31% Similarity=0.562 Sum_probs=181.0
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCC--CCHHHHhcc
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRN--YNLKQLRSH 1086 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~--i~~~~lR~~ 1086 (1255)
|+++||+++|++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .+...+|++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999963 2369999999999999999999999999999999999999999999999999852 234567899
Q ss_pred eEEEccCC--CCCcccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHH
Q 000846 1087 IALVSQEP--TLFAGTIRENIAYGKA--DARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIAL 1158 (1255)
Q Consensus 1087 i~~V~Qdp--~LF~gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlal 1158 (1255)
|+|+||+| .+|..|++||+.++.. ..+. +++.++++..++.++ ......+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGF-----------ENKPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchh-----------hcCChhhCCHHHHHHHHH
Confidence 99999998 4788999999986531 1222 233444444444322 223356799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000846 1159 ARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1159 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~ 1234 (1255)
|||++.+|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999875 48999999999999874 99999999999999999999875
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=365.74 Aligned_cols=208 Identities=28% Similarity=0.392 Sum_probs=175.6
Q ss_pred cEEEEEEEEECCCCCC-CccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHH---H
Q 000846 1008 RIELKNVFFAYPTRPD-QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ---L 1083 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~-~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---l 1083 (1255)
.|+++||+++|++... .++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974211 35999999999999999999999999999999999999999999999999998877653 2
Q ss_pred -hcceEEEccCCCCCcc-cHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHH
Q 000846 1084 -RSHIALVSQEPTLFAG-TIRENIAYGKA--DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQR 1155 (1255)
Q Consensus 1084 -R~~i~~V~Qdp~LF~g-TIreNl~~g~~--~~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQr 1155 (1255)
+++++|+||+|.+|.. |++||+.++.. ... .+++.++++..++.++.. .....||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-----------HLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHH
Confidence 3689999999999875 99999975321 111 234445555555544432 3345799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 000846 1156 IALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQ 1226 (1255)
Q Consensus 1156 lalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~ 1226 (1255)
++|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||++++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999998742 7899999999999988999999999999874
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=361.93 Aligned_cols=199 Identities=30% Similarity=0.506 Sum_probs=168.3
Q ss_pred EEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccEE
Q 000846 346 EFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGL 425 (1255)
Q Consensus 346 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 425 (1255)
+++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999641 469999999999999999999999999999999999999999999999998754 456778999
Q ss_pred eccCC--ccCcccHHHHhccCCCCCC--HHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccC
Q 000846 426 VNQEP--VLFATSITENILFGKDGAS--MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501 (1255)
Q Consensus 426 v~Q~~--~l~~~ti~~ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~ 501 (1255)
++|+| .++..|++||+.++.+... .+++.++++..++. .........||||||||++|||||+.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLY-----------ALKERHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCc-----------hhcCCCchhCCHHHHHHHHHHHHHHhC
Confidence 99998 4677899999987643221 22344444444443 334445568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEecCchhhh-hcCEEEEEeCCEEE
Q 000846 502 PKILLLDEATSALDAQSERIVQEAIDKV-SKGRTTLIIAHRLSTIR-TANLIMVLKAGKVV 560 (1255)
Q Consensus 502 ~~illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~ 560 (1255)
|++|||||||++||+.+++.+.+.|+++ .+|+|+|++||+++.+. .||++++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999887 45899999999999986 49999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=363.66 Aligned_cols=213 Identities=28% Similarity=0.475 Sum_probs=176.9
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999963 3599999999999999999999999999999999999999999999999988653 356678899
Q ss_pred EeccCCccCcc-cHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccC
Q 000846 425 LVNQEPVLFAT-SITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501 (1255)
Q Consensus 425 ~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~ 501 (1255)
|++|++.++.. |++||+.++.. ....++.. ..+.+.++.+ |++........+||||||||++||||++.+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~la~al~~~ 149 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERR-----ERIDELLDFV--GLLEAADRLVKTYSGGMRRRLEIARSLVHR 149 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999998875 99999986421 11111111 1122333333 444444455679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 000846 502 PKILLLDEATSALDAQSERIVQEAIDKVS-K-GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 502 ~~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l 568 (1255)
|+++||||||++||+++.+.+.+.|+++. + |+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999998874 3 7899999999999864 999999999999999987764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=371.46 Aligned_cols=219 Identities=33% Similarity=0.531 Sum_probs=186.2
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCC-----CceEEECCeecCC--CC
Q 000846 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL-----KGSVFMDEQDIRN--YN 1079 (1255)
Q Consensus 1007 g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--i~ 1079 (1255)
+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999963 35999999999999999999999999999999999999985 8999999999853 34
Q ss_pred HHHHhcceEEEccCCCCCcccHHHHHhcCCC--CC-C----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHH
Q 000846 1080 LKQLRSHIALVSQEPTLFAGTIRENIAYGKA--DA-R----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQ 1152 (1255)
Q Consensus 1080 ~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~~-~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 1152 (1255)
...+|+.++|+||++.+|..|++||+.++.. .. + ++.+.++++..++.+++. ...+..+.+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHH
Confidence 5678899999999999999999999976421 11 1 233455555555544433 22345667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeC-----CEEE
Q 000846 1153 KQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKN-----GRVV 1224 (1255)
Q Consensus 1153 kQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~-----G~iv 1224 (1255)
|||++|||||+++|+||||||||++||+++...+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999999863 48999999999999865 899999999 9999
Q ss_pred EecCHHHHHhh
Q 000846 1225 EQGSHNELVAL 1235 (1255)
Q Consensus 1225 e~G~~~eLl~~ 1235 (1255)
+.|+++++...
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999999764
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=370.81 Aligned_cols=219 Identities=31% Similarity=0.499 Sum_probs=184.5
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeecCC--CC
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKIRR--LH 415 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 415 (1255)
..|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999963 359999999999999999999999999999999999987 689999999999863 45
Q ss_pred HHHHhcccEEeccCCccCcccHHHHhccCCCCC--C---HHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHH
Q 000846 416 LKWLRSQMGLVNQEPVLFATSITENILFGKDGA--S---MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQ 490 (1255)
Q Consensus 416 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrq 490 (1255)
...+|++++|++|++.+|..|++||+.++.... . .+++.++++..++ ..++++.......+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAV-------WDECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCC-------cchhhhhhCCCcccCCHHHHH
Confidence 667788999999999999889999998764211 1 1122222333222 123344556677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeC-----------CE
Q 000846 491 RIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKA-----------GK 558 (1255)
Q Consensus 491 ri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~-----------G~ 558 (1255)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 99999999999999999999999999999999999998877899999999999885 5999999996 67
Q ss_pred EEEecChhHHhcc
Q 000846 559 VVESGSHNELMNR 571 (1255)
Q Consensus 559 i~~~g~~~~l~~~ 571 (1255)
+++.|+++++...
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999998764
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=363.61 Aligned_cols=204 Identities=27% Similarity=0.466 Sum_probs=172.6
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHH---Hhc
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ---LRS 1085 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---lR~ 1085 (1255)
|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++..++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 246999999999999999999999999999999999999999999999999998776543 688
Q ss_pred ceEEEccCCCC-CcccHHHHHhcCC--CCCCHHH----HHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHH
Q 000846 1086 HIALVSQEPTL-FAGTIRENIAYGK--ADARESE----IKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIAL 1158 (1255)
Q Consensus 1086 ~i~~V~Qdp~L-F~gTIreNl~~g~--~~~~~~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlal 1158 (1255)
.++|+||+|.+ +..|++||+.++. ...++++ +.++++..++.++ ......+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDK-----------AKNFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCCchhCCHHHHHHHHH
Confidence 99999999986 4679999998752 1223332 3344444444333 233456899999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 000846 1159 ARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVE 1225 (1255)
Q Consensus 1159 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive 1225 (1255)
|||++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999874 47899999999999976 89999999999853
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=357.85 Aligned_cols=200 Identities=37% Similarity=0.574 Sum_probs=179.6
Q ss_pred EEEEeEEEEcCCCCC--CccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcc
Q 000846 345 IEFRDVYFCYPSRPD--TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ 422 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 422 (1255)
|+++||+++|++..+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999974311 3699999999999999999999999999999999999999999999998 6
Q ss_pred cEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 000846 423 MGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDP 502 (1255)
Q Consensus 423 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~ 502 (1255)
|+|++|+|.+|+.|++||+.++.. ...++..++++.+++.+++..+|.|+++.+++.+.+||||||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998643 3345666777788888999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHHHh-cCCCeEEEEecCchhhhhcCEEEEEeCCE
Q 000846 503 KILLLDEATSALDAQSERIVQE-AIDKV-SKGRTTLIIAHRLSTIRTANLIMVLKAGK 558 (1255)
Q Consensus 503 ~illlDEpts~lD~~~~~~i~~-~l~~~-~~~~t~i~itH~~~~~~~~d~i~vl~~G~ 558 (1255)
+++||||||++||+++.+.+.+ .+++. .+|+|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888877 45655 34799999999999987799999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=364.38 Aligned_cols=212 Identities=35% Similarity=0.531 Sum_probs=174.7
Q ss_pred EEEEEEEEECCCCC-CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCH---HHHh
Q 000846 1009 IELKNVFFAYPTRP-DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNL---KQLR 1084 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~-~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR 1084 (1255)
|+++||+++|+.+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996421 1269999999999999999999999999999999999999999999999999988763 5778
Q ss_pred cceEEEccCC--CCC-cccHHHHHhcCCC----CCCHHHHHHHHHHhcHHHHHHccccccc-cccCCCCCCCChHHHHHH
Q 000846 1085 SHIALVSQEP--TLF-AGTIRENIAYGKA----DARESEIKKAAVLANAHEFISGMKDGYD-TYCGERGVQLSGGQKQRI 1156 (1255)
Q Consensus 1085 ~~i~~V~Qdp--~LF-~gTIreNl~~g~~----~~~~~ei~~al~~a~l~~~i~~lp~gld-t~vge~G~~LSgGQkQrl 1156 (1255)
++++|+||+| .++ ..|+++|+.++.. ...+++..++. .+++..+ |++ ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 8999999999 344 5799999975421 11111111111 1233332 342 334566678999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEec
Q 000846 1157 ALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQG 1227 (1255)
Q Consensus 1157 alARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G 1227 (1255)
+|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998764 799999999999987 59999999999998865
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=372.15 Aligned_cols=218 Identities=28% Similarity=0.440 Sum_probs=182.4
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeecCCC--CH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKIRRL--HL 416 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~--~~ 416 (1255)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... +.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999963 459999999999999999999999999999999999864 7999999999998643 34
Q ss_pred HHHhcccEEeccCCccCcccHHHHhccCCCC--C-CH----HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHH
Q 000846 417 KWLRSQMGLVNQEPVLFATSITENILFGKDG--A-SM----DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQK 489 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqr 489 (1255)
..++++++|++|++.+|++|++||+.++... . .. +.+.++++..++. .++....+..+.+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALW-------DEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCC-------cchHHHHhcCcccCCHHHH
Confidence 5678899999999999999999999875321 1 11 1122222222211 1122345677789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 000846 490 QRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 490 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l 568 (1255)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999877889999999999875 5999999999999999999998
Q ss_pred hcc
Q 000846 569 MNR 571 (1255)
Q Consensus 569 ~~~ 571 (1255)
..+
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=370.17 Aligned_cols=218 Identities=30% Similarity=0.485 Sum_probs=182.9
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC--C---CccEEEECCeecCC--CCH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD--P---VEGEVLLDGYKIRR--LHL 416 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~--~---~~G~i~~~g~~~~~--~~~ 416 (1255)
.|+++|+++.|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5899999999973 359999999999999999999999999999999999997 3 59999999999864 345
Q ss_pred HHHhcccEEeccCCccCcccHHHHhccCCCC---CCHHH----HHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHH
Q 000846 417 KWLRSQMGLVNQEPVLFATSITENILFGKDG---ASMDD----VISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQK 489 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqr 489 (1255)
..+|+.++|++|++.+|+.|++||+.++... ...++ +.++++..++.+ .+.+.....+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWD-------EVKDRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhhhhhhCCcccCCHHHH
Confidence 5678899999999999989999999875321 11122 122222222221 112345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 000846 490 QRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 490 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l 568 (1255)
||++||||++++|+++||||||++||++++..+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999985 5999999999999999999998
Q ss_pred hcc
Q 000846 569 MNR 571 (1255)
Q Consensus 569 ~~~ 571 (1255)
.++
T Consensus 242 ~~~ 244 (259)
T PRK14274 242 FSN 244 (259)
T ss_pred hhC
Confidence 764
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=361.89 Aligned_cols=203 Identities=26% Similarity=0.444 Sum_probs=173.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
|+++|++|.|++ .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..++++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 578999999964 35999999999999 99999999999999999999999999999999999987766 66788999
Q ss_pred EeccCCccCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHH
Q 000846 425 LVNQEPVLFAT-SITENILFGKD--GAS----MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARA 497 (1255)
Q Consensus 425 ~v~Q~~~l~~~-ti~~ni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARa 497 (1255)
|++|+|.+|.. |++||+.+... ... .+++.++++..++. ........+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-----------DRAKKKIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-----------HHHhCchhhCCHHHHHHHHHHHH
Confidence 99999999986 99999986421 111 12233333333333 33344557899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 000846 498 LIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESG 563 (1255)
Q Consensus 498 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g 563 (1255)
++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998877799999999999986 59999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=379.86 Aligned_cols=222 Identities=30% Similarity=0.462 Sum_probs=183.1
Q ss_pred eEEEEeEEEEcCCCC-------CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCH
Q 000846 344 EIEFRDVYFCYPSRP-------DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHL 416 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~-------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~ 416 (1255)
-|+++|++++|+.+. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999997321 2469999999999999999999999999999999999999999999999999988764
Q ss_pred H---HHhcccEEeccCC--ccCcc-cHHHHhccCC---CCCCHHHHHHHHHHhchHHHHhcCCCccc-chhcCCCCCCCh
Q 000846 417 K---WLRSQMGLVNQEP--VLFAT-SITENILFGK---DGASMDDVISAAKAANAHDFITKLPDGYE-TQVGQLGFQMSG 486 (1255)
Q Consensus 417 ~---~~r~~i~~v~Q~~--~l~~~-ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSg 486 (1255)
. .+|++|+||+|+| .|+.. ||.+|+..+. ......+. ...+.++++.+ |++ ........+|||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAER-----REKALAMMAKV--GLRPEHYDRYPHMFSG 157 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHH-----HHHHHHHHHHC--CCChHHhcCCCccCCH
Confidence 3 5678999999999 35554 9999886421 11111111 11223344444 443 234556789999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 000846 487 GQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESG 563 (1255)
Q Consensus 487 Gqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g 563 (1255)
|||||++|||||+.+|++||+||||++||..++..+.+.|+++.+ |.|+|+|||+++.+. .||+|++|++|+|+|.|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999998743 899999999999996 59999999999999999
Q ss_pred ChhHHhccC
Q 000846 564 SHNELMNRG 572 (1255)
Q Consensus 564 ~~~~l~~~~ 572 (1255)
+.+++++++
T Consensus 238 ~~~~~~~~p 246 (327)
T PRK11308 238 TKEQIFNNP 246 (327)
T ss_pred CHHHHhcCC
Confidence 999998764
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=369.05 Aligned_cols=218 Identities=33% Similarity=0.477 Sum_probs=183.5
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeecCCCCHHH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP-----VEGEVLLDGYKIRRLHLKW 418 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~ 418 (1255)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999963 3599999999999999999999999999999999999974 6999999999998877778
Q ss_pred HhcccEEeccCCccC-cccHHHHhccCCCC----CCH----HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHH
Q 000846 419 LRSQMGLVNQEPVLF-ATSITENILFGKDG----ASM----DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQK 489 (1255)
Q Consensus 419 ~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~----~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqr 489 (1255)
+|+.|+|++|+|.+| ..|++||+.++... ... +++.++++..++.+ .++........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWD-------EVKDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCc-------chhhhhcCCcccCCHHHH
Confidence 889999999999766 56999999875321 011 12223333332211 112334566789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 000846 490 QRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 490 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l 568 (1255)
||++|||||+++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999985 5999999999999999999998
Q ss_pred hcc
Q 000846 569 MNR 571 (1255)
Q Consensus 569 ~~~ 571 (1255)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14247 233 FTN 235 (250)
T ss_pred HcC
Confidence 754
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=365.11 Aligned_cols=209 Identities=27% Similarity=0.461 Sum_probs=179.5
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++||+++|++ .++++|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4999999999963 4699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCCCCCcccHHHHHhcCC---CCC-CHHHHHHHHHHhcHHHHHHccccccc-cccCCCCCCCChHHHHHHHHHHHH
Q 000846 1088 ALVSQEPTLFAGTIRENIAYGK---ADA-RESEIKKAAVLANAHEFISGMKDGYD-TYCGERGVQLSGGQKQRIALARAI 1162 (1255)
Q Consensus 1088 ~~V~Qdp~LF~gTIreNl~~g~---~~~-~~~ei~~al~~a~l~~~i~~lp~gld-t~vge~G~~LSgGQkQrlalARAL 1162 (1255)
+|+||++.+|+.|++||+.++. ... .++++.+. ++.+ |++ +.......+||||||||++|||||
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDD---------LERF--ALPDTILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHH---------HHHc--CCChHHhcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999997631 111 12222233 3332 332 234556778999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEe-CCEEEEecCHH
Q 000846 1163 LKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQKSDTIAVIK-NGRVVEQGSHN 1230 (1255)
Q Consensus 1163 lr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~-~G~ive~G~~~ 1230 (1255)
+++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+..||++++|+ ++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999999875 3789999999999998899999994 67777888885
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=363.88 Aligned_cols=209 Identities=31% Similarity=0.499 Sum_probs=181.5
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++||+++|+. . ..|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 789999999963 2 249999999999999999999999999999999999999999999999887654 357899
Q ss_pred EEccCCCCCcc-cHHHHHhcCC-CC-----CCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHH
Q 000846 1089 LVSQEPTLFAG-TIRENIAYGK-AD-----ARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161 (1255)
Q Consensus 1089 ~V~Qdp~LF~g-TIreNl~~g~-~~-----~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARA 1161 (1255)
|+||++.+|.+ |++||+.++. +. ..++++.++++..++.+++...| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999985 9999998652 21 12345667777777666554433 4799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1162 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
++++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999998753 7899999999999865 899999999999999999999863
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=371.43 Aligned_cols=218 Identities=32% Similarity=0.496 Sum_probs=186.3
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CCceEEECCeecCC--CCH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP-----LKGSVFMDEQDIRN--YNL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~~ 1080 (1255)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 5999999999963 3699999999999999999999999999999999999863 68999999999864 344
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHH
Q 000846 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKAD-----ARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQR 1155 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~-----~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQr 1155 (1255)
..+|++|+|+||++.+|+.|++||+.++... ..++++.++++.+++.+++. ......+..||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHHHH
Confidence 5678999999999999989999999875311 11334455566666544332 12344567899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEe---------CCEEEE
Q 000846 1156 IALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIK---------NGRVVE 1225 (1255)
Q Consensus 1156 lalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~---------~G~ive 1225 (1255)
++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||++++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998778999999999999864 99999997 899999
Q ss_pred ecCHHHHHhh
Q 000846 1226 QGSHNELVAL 1235 (1255)
Q Consensus 1226 ~G~~~eLl~~ 1235 (1255)
.|+++++.+.
T Consensus 250 ~g~~~~~~~~ 259 (274)
T PRK14265 250 FSPTEQMFGS 259 (274)
T ss_pred eCCHHHHHhC
Confidence 9999999864
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=367.71 Aligned_cols=219 Identities=34% Similarity=0.547 Sum_probs=183.6
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeecCC--CC
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP-----VEGEVLLDGYKIRR--LH 415 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 415 (1255)
|.|+++||++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999973 3599999999999999999999999999999999999863 69999999999864 34
Q ss_pred HHHHhcccEEeccCCccCcccHHHHhccCCCC--C-CH----HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHH
Q 000846 416 LKWLRSQMGLVNQEPVLFATSITENILFGKDG--A-SM----DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQ 488 (1255)
Q Consensus 416 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 488 (1255)
...+|+.++|++|++.+|+.|++||+.++... . .. +++.++++..++.+ ++.......+.+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD-------EVKDRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhHHHHhcCCCCCCHHH
Confidence 55678899999999999989999999875321 1 11 12222233332221 22234566778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhH
Q 000846 489 KQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNE 567 (1255)
Q Consensus 489 rqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~ 567 (1255)
|||++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998877899999999999875 599999999999999999999
Q ss_pred Hhcc
Q 000846 568 LMNR 571 (1255)
Q Consensus 568 l~~~ 571 (1255)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 8754
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=370.85 Aligned_cols=218 Identities=32% Similarity=0.495 Sum_probs=182.6
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeecC--CCCH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP-----VEGEVLLDGYKIR--RLHL 416 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~--~~~~ 416 (1255)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999987 4999999999987 4455
Q ss_pred HHHhcccEEeccCCccCcc-cHHHHhccCCC--C--CCHHH----HHHHHHHhchHHHHhcCCCcccchhcCCCCCCChH
Q 000846 417 KWLRSQMGLVNQEPVLFAT-SITENILFGKD--G--ASMDD----VISAAKAANAHDFITKLPDGYETQVGQLGFQMSGG 487 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~--~--~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 487 (1255)
..+|++++|++|++.+|.. |++||+.++.. . ...++ +.++++..++.+ .+.........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWD-------EVKDRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCcc-------chhhhhccChhhCCHH
Confidence 5678899999999999976 99999987531 1 01111 222222222211 1123456677899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChh
Q 000846 488 QKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHN 566 (1255)
Q Consensus 488 qrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~ 566 (1255)
||||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877899999999999975 59999999999999999999
Q ss_pred HHhcc
Q 000846 567 ELMNR 571 (1255)
Q Consensus 567 ~l~~~ 571 (1255)
++...
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 98753
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=370.92 Aligned_cols=219 Identities=31% Similarity=0.557 Sum_probs=184.8
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCC--------
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL-------- 414 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~-------- 414 (1255)
+.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 56999999999973 4599999999999999999999999999999999999999999999999988542
Q ss_pred -----CHHHHhcccEEeccCCccCcc-cHHHHhccCCC---CCCHHHHHHHHHHhchHHHHhcCCCcccchh-cCCCCCC
Q 000846 415 -----HLKWLRSQMGLVNQEPVLFAT-SITENILFGKD---GASMDDVISAAKAANAHDFITKLPDGYETQV-GQLGFQM 484 (1255)
Q Consensus 415 -----~~~~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~L 484 (1255)
....++++++|++|++.+|.. |++||+.++.. .....+. ...+.+.++.+ |+.... .....+|
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~~L 153 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEA-----RERAVKYLAKV--GIDERAQGKYPVHL 153 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHc--CCChhhhhCCcccC
Confidence 134667899999999999975 99999986421 1111111 11223445554 555543 5677899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEe
Q 000846 485 SGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVES 562 (1255)
Q Consensus 485 SgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~ 562 (1255)
|||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999875 48999999999999875 999999999999999
Q ss_pred cChhHHhcc
Q 000846 563 GSHNELMNR 571 (1255)
Q Consensus 563 g~~~~l~~~ 571 (1255)
|+++++...
T Consensus 234 ~~~~~~~~~ 242 (257)
T PRK10619 234 GAPEQLFGN 242 (257)
T ss_pred CCHHHhhhC
Confidence 999998754
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=369.28 Aligned_cols=217 Identities=33% Similarity=0.535 Sum_probs=184.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCC---------
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH--------- 415 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~--------- 415 (1255)
|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 578999999973 35999999999999999999999999999999999999999999999999986543
Q ss_pred ----HHHHhcccEEeccCCccCc-ccHHHHhccCCC---CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChH
Q 000846 416 ----LKWLRSQMGLVNQEPVLFA-TSITENILFGKD---GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGG 487 (1255)
Q Consensus 416 ----~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 487 (1255)
...+|+.++|++|++.+|. .|+.||+.++.. ....++.. ..+.+.++.+ |++......+.+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE-----KRAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhHhhcChhhcCHH
Confidence 2456889999999999886 699999987521 11111111 1234455555 6666667777899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecC
Q 000846 488 QKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGS 564 (1255)
Q Consensus 488 qrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~ 564 (1255)
||||++|||||+.+|+++||||||++||+.++..+.+.|+++.+ |+|+|++||+++.+. .||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988743 899999999999985 599999999999999999
Q ss_pred hhHHhcc
Q 000846 565 HNELMNR 571 (1255)
Q Consensus 565 ~~~l~~~ 571 (1255)
++++.+.
T Consensus 231 ~~~~~~~ 237 (252)
T TIGR03005 231 PDEIFRQ 237 (252)
T ss_pred HHHHhcC
Confidence 9998764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=367.41 Aligned_cols=219 Identities=33% Similarity=0.530 Sum_probs=184.7
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCC-----ccEEEECCeecCCC--CH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV-----EGEVLLDGYKIRRL--HL 416 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~-----~G~i~~~g~~~~~~--~~ 416 (1255)
.|+++|++|+|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 35999999999999999999999999999999999999997 69999999998643 44
Q ss_pred HHHhcccEEeccCCccCcccHHHHhccCCCC--CC-HHH----HHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHH
Q 000846 417 KWLRSQMGLVNQEPVLFATSITENILFGKDG--AS-MDD----VISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQK 489 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~-~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqr 489 (1255)
..+|+.++||+|+|.+|+.|++||+.++... .. .++ +.++++..++. +++.+.....+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALW-------DEVKDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCc-------hhhhhHhhCCcccCCHHHH
Confidence 5778899999999999989999999876321 11 111 22222222222 2233446677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 000846 490 QRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 490 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l 568 (1255)
||++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 899999999999999999998
Q ss_pred hccC
Q 000846 569 MNRG 572 (1255)
Q Consensus 569 ~~~~ 572 (1255)
...+
T Consensus 234 ~~~~ 237 (251)
T PRK14249 234 FSRP 237 (251)
T ss_pred HhCC
Confidence 7653
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=370.04 Aligned_cols=218 Identities=31% Similarity=0.499 Sum_probs=183.4
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC--C---CCceEEECCeecCC--CCH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD--P---LKGSVFMDEQDIRN--YNL 1080 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--p---~~G~I~idG~di~~--i~~ 1080 (1255)
.|+++||+++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999963 469999999999999999999999999999999999975 4 58999999999864 344
Q ss_pred HHHhcceEEEccCCCCCcccHHHHHhcCCC--CC-C----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHH
Q 000846 1081 KQLRSHIALVSQEPTLFAGTIRENIAYGKA--DA-R----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~--~~-~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQk 1153 (1255)
..+|++++|+||+|.+|..|+++|+.++.. .. . ++++.++++.+++.+. +.........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE-------VKDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccc-------hhhHHhcCcccCCHHHH
Confidence 567889999999999999999999986421 11 1 2233344444443322 22233455678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1154 QrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++.+.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999865 999999999999999999999
Q ss_pred Hhh
Q 000846 1233 VAL 1235 (1255)
Q Consensus 1233 l~~ 1235 (1255)
...
T Consensus 235 ~~~ 237 (252)
T PRK14255 235 FLN 237 (252)
T ss_pred hcC
Confidence 764
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=369.70 Aligned_cols=226 Identities=25% Similarity=0.422 Sum_probs=186.1
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCee-----cCCCCHHH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQD-----IRNYNLKQ 1082 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~d-----i~~i~~~~ 1082 (1255)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999963 369999999999999999999999999999999999999999999999999 87776554
Q ss_pred ----HhcceEEEccCCC--CC-cccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHccccccc-cccCCCCCCCChH
Q 000846 1083 ----LRSHIALVSQEPT--LF-AGTIRENIAYGK---ADARESEIKKAAVLANAHEFISGMKDGYD-TYCGERGVQLSGG 1151 (1255)
Q Consensus 1083 ----lR~~i~~V~Qdp~--LF-~gTIreNl~~g~---~~~~~~ei~~al~~a~l~~~i~~lp~gld-t~vge~G~~LSgG 1151 (1255)
+|+.++||||++. ++ ..|+.+|+.+.. ......++. ..+.+++..+ |++ +.....+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 33 358888985421 011112221 1234555555 343 3456778899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 000846 1152 QKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGS 1228 (1255)
Q Consensus 1152 QkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~ 1228 (1255)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+.+ ||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998753 7899999999999974 99999999999999999
Q ss_pred HHHHHhhhcCchhHHH
Q 000846 1229 HNELVALSRGGAYYSL 1244 (1255)
Q Consensus 1229 ~~eLl~~~~~g~y~~l 1244 (1255)
++++... +...|.+.
T Consensus 236 ~~~~~~~-~~~~~~~~ 250 (258)
T PRK11701 236 TDQVLDD-PQHPYTQL 250 (258)
T ss_pred HHHHhcC-CCCHHHHH
Confidence 9999864 34445544
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=370.95 Aligned_cols=217 Identities=31% Similarity=0.541 Sum_probs=184.9
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCC-HHHHhccc
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH-LKWLRSQM 423 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~r~~i 423 (1255)
++++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999963 235999999999999999999999999999999999999999999999999997765 45678899
Q ss_pred EEeccCCc--cCcccHHHHhccCCCC--CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhc
Q 000846 424 GLVNQEPV--LFATSITENILFGKDG--ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALI 499 (1255)
Q Consensus 424 ~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~ 499 (1255)
+|++|+|. +++.|++|||.++... .+.++..+ .+.+.++.+ |++......+..||||||||++|||||+
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRK-----RVDRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 5667999999876321 12222211 122334444 5655666677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhc
Q 000846 500 RDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 500 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
.+|++|||||||++||+.++..+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999998875 4899999999999998899999999999999999998865
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=365.87 Aligned_cols=218 Identities=25% Similarity=0.380 Sum_probs=182.4
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHH-HHhcc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLK-WLRSQ 422 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~ 422 (1255)
.|+++|++++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999887754 46788
Q ss_pred cEEeccCCccCcc-cHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccC
Q 000846 423 MGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501 (1255)
Q Consensus 423 i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~ 501 (1255)
++|++|++.+|.+ |++||+.++......++..+. +.+.+..++ +++........+||||||||++||||++.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQER-----IKWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHH-----HHHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999985 999999876422222222111 122222222 122233456679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 502 PKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 502 ~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
|+|+||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999998874 4899999999999874 599999999999999999999864
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=372.21 Aligned_cols=220 Identities=31% Similarity=0.474 Sum_probs=183.5
Q ss_pred eEEEEeEEEEcCCC------CCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHH
Q 000846 344 EIEFRDVYFCYPSR------PDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLK 417 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~ 417 (1255)
.|+++||+|.|+.. .+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999632 135699999999999999999999999999999999999999999999999999877653
Q ss_pred ---HHhcccEEeccCCc--cCc-ccHHHHhccCCC---CCCHHHHHHHHHHhchHHHHhcCCCccc-chhcCCCCCCChH
Q 000846 418 ---WLRSQMGLVNQEPV--LFA-TSITENILFGKD---GASMDDVISAAKAANAHDFITKLPDGYE-TQVGQLGFQMSGG 487 (1255)
Q Consensus 418 ---~~r~~i~~v~Q~~~--l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgG 487 (1255)
.+|+.|+|++|+|. ++. .|++||+.++.. ....++ ....+.+.++.+ |++ ......+.+||||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LSgG 154 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESE-----QKARIAELLDMV--GLRSEDADKLPRQLSGG 154 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHc--CCChhhhhCChhhCCHH
Confidence 36778999999983 443 599999975321 111111 111233445555 564 3456778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecC
Q 000846 488 QKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGS 564 (1255)
Q Consensus 488 qrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~ 564 (1255)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+. .||++++|++|++++.|+
T Consensus 155 e~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (265)
T TIGR02769 155 QLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECD 234 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECC
Confidence 99999999999999999999999999999999999999998753 899999999999986 599999999999999999
Q ss_pred hhHHhc
Q 000846 565 HNELMN 570 (1255)
Q Consensus 565 ~~~l~~ 570 (1255)
++++..
T Consensus 235 ~~~~~~ 240 (265)
T TIGR02769 235 VAQLLS 240 (265)
T ss_pred HHHHcC
Confidence 999976
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=362.54 Aligned_cols=205 Identities=24% Similarity=0.504 Sum_probs=171.3
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999963 469999999999999999999999999999999999999999999999998753 5678999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 000846 1089 LVSQEPTLFAG-TIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKN 1165 (1255)
Q Consensus 1089 ~V~Qdp~LF~g-TIreNl~~g~~--~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~ 1165 (1255)
|+||++.+|.+ |++||+.++.. ..+..+.. ..+.+++..+ |++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 99999999875 99999976421 11111111 1223333333 344444455678999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000846 1166 PSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227 (1255)
Q Consensus 1166 p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1227 (1255)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999875 47899999999999865 9999999999998865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=369.54 Aligned_cols=227 Identities=27% Similarity=0.443 Sum_probs=188.1
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECC------eecCCCCHH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDE------QDIRNYNLK 1081 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG------~di~~i~~~ 1081 (1255)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| .++.+.+..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 4999999999963 4699999999999999999999999999999999999999986666554 677777777
Q ss_pred HHhcceEEEccCCCCCcc-cHHHHHhcCCC--CC-CHHH----HHHHHHHhcHHHHHHccccccccccCCCCCCCChHHH
Q 000846 1082 QLRSHIALVSQEPTLFAG-TIRENIAYGKA--DA-RESE----IKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1082 ~lR~~i~~V~Qdp~LF~g-TIreNl~~g~~--~~-~~~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQk 1153 (1255)
.+|++++|+||+|.+|.+ |+++|+.++.. .. .+++ +.++++..++.+++ +......+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHH
Confidence 889999999999999975 99999986532 11 2222 23344444433222 1123445678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHH
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1154 QrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
||++||||++++|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999994 5999999999999999999999
Q ss_pred HhhhcCchhHHHH
Q 000846 1233 VALSRGGAYYSLI 1245 (1255)
Q Consensus 1233 l~~~~~g~y~~l~ 1245 (1255)
.+. +...|.+.+
T Consensus 240 ~~~-~~~~~~~~~ 251 (257)
T PRK14246 240 FTS-PKNELTEKY 251 (257)
T ss_pred HhC-CCcHHHHHH
Confidence 864 455565543
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=369.80 Aligned_cols=220 Identities=30% Similarity=0.496 Sum_probs=182.5
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeecCCCC--H
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP-----VEGEVLLDGYKIRRLH--L 416 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~--~ 416 (1255)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++...+ .
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 6999999999963 3599999999999999999999999999999999999985 7999999999986532 3
Q ss_pred HHHhcccEEeccCCccCcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcC--CCcccchhcCCCCCCChHHHHHH
Q 000846 417 KWLRSQMGLVNQEPVLFATSITENILFGKD--GASMDDVISAAKAANAHDFITKL--PDGYETQVGQLGFQMSGGQKQRI 492 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqrqri 492 (1255)
..+++.++|++|++.+|+.|++||+.++.. ....++..+ .+.+.++.+ .............+||||||||+
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 163 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDG-----VVENALRSAALWDETSDRLKSPALSLSGGQQQRL 163 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHH
Confidence 456788999999999999999999987531 112221111 112222222 11112345566789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhcc
Q 000846 493 AIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 493 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++..+
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 243 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999998877899999999999985 5999999999999999999998764
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=364.03 Aligned_cols=210 Identities=31% Similarity=0.537 Sum_probs=181.1
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++|++++|++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999962 27999999999999999999999999999999999999999999999999987654 378999
Q ss_pred EEccCCCCCc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHH
Q 000846 1089 LVSQEPTLFA-GTIRENIAYGKAD--AR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161 (1255)
Q Consensus 1089 ~V~Qdp~LF~-gTIreNl~~g~~~--~~----~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARA 1161 (1255)
|+||++.+|. .|++||+.++... .+ ++++.++++..++.+++. ....+||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-----------RKPETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHh-----------cCcccCCHHHHHHHHHHHH
Confidence 9999999885 7999999865321 11 233445555555544433 3346799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1162 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
++++|++|+|||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+.+ ||+|++|++|++++.|+++++++.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999998753 8999999999999875 999999999999999999999864
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=372.82 Aligned_cols=218 Identities=23% Similarity=0.416 Sum_probs=183.6
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHH---HHh
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLK---WLR 420 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r 420 (1255)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 5899999999963 4599999999999999999999999999999999999999999999999998766543 357
Q ss_pred cccEEeccCCccCcc-cHHHHhccCCC---CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHH
Q 000846 421 SQMGLVNQEPVLFAT-SITENILFGKD---GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIAR 496 (1255)
Q Consensus 421 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lAR 496 (1255)
++++|++|++.+|.. |++||+.++.. ....++.. ..+.+.+..+ |+.........+||||||||++|||
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH-----STVMMKLEAV--GLRGAAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 789999999999986 99999986421 11111111 1122334444 5554555667899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhcc
Q 000846 497 ALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 497 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998743 7999999999998865 999999999999999999998764
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=376.72 Aligned_cols=219 Identities=33% Similarity=0.563 Sum_probs=186.4
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCeecCCC--C
Q 000846 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD-----PLKGSVFMDEQDIRNY--N 1079 (1255)
Q Consensus 1007 g~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~i--~ 1079 (1255)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46999999999963 469999999999999999999999999999999999986 6899999999998753 4
Q ss_pred HHHHhcceEEEccCCCCCcccHHHHHhcCCCC-------------------CCHHHHHHHHHHhcHHHHHHccccccccc
Q 000846 1080 LKQLRSHIALVSQEPTLFAGTIRENIAYGKAD-------------------ARESEIKKAAVLANAHEFISGMKDGYDTY 1140 (1255)
Q Consensus 1080 ~~~lR~~i~~V~Qdp~LF~gTIreNl~~g~~~-------------------~~~~ei~~al~~a~l~~~i~~lp~gldt~ 1140 (1255)
...+|++|+||||++.+|.+|++||+.++... ..++++.++++..++ +.++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL-------WDEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCC-------chhhhHH
Confidence 56788999999999999999999999875210 012233444444433 2234445
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEE-EEE
Q 000846 1141 CGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTI-AVI 1218 (1255)
Q Consensus 1141 vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I-~Vl 1218 (1255)
+...+.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 56777899999999999999999999999999999999999999999999998777899999999999865 9997 567
Q ss_pred eCCEEEEecCHHHHHhh
Q 000846 1219 KNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1219 ~~G~ive~G~~~eLl~~ 1235 (1255)
++|++++.|+++++++.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999999763
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=363.56 Aligned_cols=209 Identities=30% Similarity=0.515 Sum_probs=175.2
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHH---Hh
Q 000846 345 IEFRDVYFCYPSRP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW---LR 420 (1255)
Q Consensus 345 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~r 420 (1255)
|+++||+++|++.. ..++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 246999999999999999999999999999999999999999999999999998776543 33
Q ss_pred -cccEEeccCCccCc-ccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHH
Q 000846 421 -SQMGLVNQEPVLFA-TSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIAR 496 (1255)
Q Consensus 421 -~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lAR 496 (1255)
+.++|++|++.+|. .|++||+.++.. .....+.. ..+.++++.+ |++........+||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK-----ERAYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 68999999999986 499999987421 11111111 1123445554 6666667777899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEEE
Q 000846 497 ALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIRTANLIMVLKAGKVV 560 (1255)
Q Consensus 497 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~ 560 (1255)
|++.+|++|||||||++||++++..+.+.|+++. .++|+|++||+++.+..+|+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999998874 379999999999998889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=370.94 Aligned_cols=219 Identities=30% Similarity=0.563 Sum_probs=186.0
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++++|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 34699999999999999999999999999999999999999999999999999877777888999
Q ss_pred EEeccCCc--cCcccHHHHhccCCCC--CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhc
Q 000846 424 GLVNQEPV--LFATSITENILFGKDG--ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALI 499 (1255)
Q Consensus 424 ~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~ 499 (1255)
+|++|+|. ++..|++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999984 4567999999875321 12222211 122334444 5555566667899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhc
Q 000846 500 RDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 500 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999998753 489999999999887899999999999999999988865
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=382.67 Aligned_cols=205 Identities=24% Similarity=0.402 Sum_probs=172.0
Q ss_pred CccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCe----ecCCCCHHHH---h-cccEEeccCCc
Q 000846 360 TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGY----KIRRLHLKWL---R-SQMGLVNQEPV 431 (1255)
Q Consensus 360 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~----~~~~~~~~~~---r-~~i~~v~Q~~~ 431 (1255)
..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||. ++...+...+ | ++|+||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 45899999999999999999999999999999999999999999999996 5666655443 3 58999999999
Q ss_pred cCc-ccHHHHhccCCCC--CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 000846 432 LFA-TSITENILFGKDG--ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLD 508 (1255)
Q Consensus 432 l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~illlD 508 (1255)
+|+ .|++||+.++... ...++. ...+.+.++.+ |++........+||||||||++|||||+.+|+|||||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~-----~~~a~e~le~v--gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAER-----RKRVDEQLELV--GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 997 5999999986421 111111 11223334443 5554555566789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhcc
Q 000846 509 EATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 509 Epts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~-~~~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
||||+||+.+++.+++.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|++++++.+
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 99999999999999999988753 89999999999997 56999999999999999999999875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=366.42 Aligned_cols=222 Identities=24% Similarity=0.418 Sum_probs=187.9
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHH-Hhcc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW-LRSQ 422 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 422 (1255)
-|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 3789999999973 35999999999999999999999999999999999999999999999999988776554 4567
Q ss_pred cEEeccCCccCcc-cHHHHhccCCCCCC-H-HH---HHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHH
Q 000846 423 MGLVNQEPVLFAT-SITENILFGKDGAS-M-DD---VISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIAR 496 (1255)
Q Consensus 423 i~~v~Q~~~l~~~-ti~~ni~~~~~~~~-~-~~---~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lAR 496 (1255)
++|++|++.+|.+ |++||+.++..... . .. .........+.+.++.+ |++........+||||||||++|||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHH
Confidence 9999999999987 99999987532100 0 00 00011122334556655 6766677788899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhc
Q 000846 497 ALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 497 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
|++.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999999999998778999999999999864 99999999999999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=372.17 Aligned_cols=220 Identities=30% Similarity=0.532 Sum_probs=185.4
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCc---cEEEECCeecCCCCHHHH
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVE---GEVLLDGYKIRRLHLKWL 419 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~---G~i~~~g~~~~~~~~~~~ 419 (1255)
+.|+++|++|+|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 369999999999642 2459999999999999999999999999999999999999998 899999999987777778
Q ss_pred hcccEEeccCCc--cCcccHHHHhccCCCC--CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHH
Q 000846 420 RSQMGLVNQEPV--LFATSITENILFGKDG--ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIA 495 (1255)
Q Consensus 420 r~~i~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lA 495 (1255)
++++|||+|+|. +++.|++|||.++... .+.++..+ .+.+.++.+ |++........+||||||||++||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~G~~qrv~la 155 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK-----IVRDVLADV--GMLDYIDSEPANLSGGQKQRVAIA 155 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHH
Confidence 889999999984 5677999999876321 22222111 112223333 444445556679999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhc
Q 000846 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 496 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
|||+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999988743 899999999999988899999999999999999998865
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=359.39 Aligned_cols=203 Identities=28% Similarity=0.436 Sum_probs=173.3
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... ..++++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999963 4699999999999999999999999999999999999999999999999988654 45677899
Q ss_pred EeccCCccCc-ccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccC
Q 000846 425 LVNQEPVLFA-TSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501 (1255)
Q Consensus 425 ~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~ 501 (1255)
||+|++.++. .|++||+.++.. ....+++.++++..++. .........||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLK-----------DSAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH-----------HHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 699999987532 12233444444444443 334455678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 000846 502 PKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESG 563 (1255)
Q Consensus 502 ~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g 563 (1255)
|+++||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+. .||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998875 4899999999999986 59999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=372.94 Aligned_cols=220 Identities=30% Similarity=0.561 Sum_probs=184.9
Q ss_pred eEEEEeEEEEcCCCC--CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCC----CHH
Q 000846 344 EIEFRDVYFCYPSRP--DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL----HLK 417 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~ 417 (1255)
.|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999996321 14699999999999999999999999999999999999999999999999998643 245
Q ss_pred HHhcccEEeccCC--ccCcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCccc-chhcCCCCCCChHHHHHH
Q 000846 418 WLRSQMGLVNQEP--VLFATSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYE-TQVGQLGFQMSGGQKQRI 492 (1255)
Q Consensus 418 ~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqrqri 492 (1255)
..++.++|++|+| .+|..|++|||.++.. ....++..+ .+.+.+..+ |++ ........+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 6778999999998 5777899999987532 122222211 123445554 665 345677889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 493 AIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 493 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|.|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999875 4899999999999985 599999999999999999998865
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=371.30 Aligned_cols=213 Identities=31% Similarity=0.461 Sum_probs=182.9
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5999999999973 3599999999999999999999999999999999999999999999999999887777888899
Q ss_pred EEeccCCccCcc-cHHHHhccCCCCC----------CHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHH
Q 000846 424 GLVNQEPVLFAT-SITENILFGKDGA----------SMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRI 492 (1255)
Q Consensus 424 ~~v~Q~~~l~~~-ti~~ni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri 492 (1255)
+|++|++.++.+ |+.||+.++.... ..+++.++++..++ +........+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGL-----------KPLAHRLVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCC-----------HHHhcCCcccCCHHHHHHH
Confidence 999999877665 9999998753210 11223333444433 3334445568999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHh
Q 000846 493 AIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-K-GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELM 569 (1255)
Q Consensus 493 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~ 569 (1255)
+||||++.+|++|||||||++||+.+.+.+.+.|+++. + |+|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999999874 3 799999999999985 59999999999999999998875
Q ss_pred c
Q 000846 570 N 570 (1255)
Q Consensus 570 ~ 570 (1255)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 4
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=362.22 Aligned_cols=205 Identities=33% Similarity=0.559 Sum_probs=171.0
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCC--CCHHHHhcc
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRN--YNLKQLRSH 1086 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~--i~~~~lR~~ 1086 (1255)
|+++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+|++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 578999999963 369999999999999999999999999999999999999999999999999853 455677899
Q ss_pred eEEEccCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHH
Q 000846 1087 IALVSQEPTLFA-GTIRENIAYGKA---DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAI 1162 (1255)
Q Consensus 1087 i~~V~Qdp~LF~-gTIreNl~~g~~---~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARAL 1162 (1255)
++|+||+|.+|. .|++||+.++.. ..+.++..+ .+.+++..+ |++........+||||||||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999886 699999977532 122222111 112233332 344444455678999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 000846 1163 LKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRV 1223 (1255)
Q Consensus 1163 lr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~i 1223 (1255)
+++|++|||||||++||+++.+.+.+.|++.. .++|+|++||+++.+.+ ||+|++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999875 47899999999999965 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=366.44 Aligned_cols=217 Identities=25% Similarity=0.452 Sum_probs=186.7
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHH-Hhcc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW-LRSQ 422 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 422 (1255)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 4889999999963 36999999999999999999999999999999999999999999999999998776543 5778
Q ss_pred cEEeccCCccCcc-cHHHHhccCCCC---CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHh
Q 000846 423 MGLVNQEPVLFAT-SITENILFGKDG---ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARAL 498 (1255)
Q Consensus 423 i~~v~Q~~~l~~~-ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal 498 (1255)
++|++|++.+|.. |++||+.++... ...++ ....+.+.++.+ |++........+||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQ-----REDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHH-----HHHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 9999999998875 999999875321 11111 112334556666 676667778889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 499 IRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 499 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
+.+|++|||||||++||+.+.+.+.+.++++. +|+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999998875 4899999999998775 599999999999999999998865
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=370.66 Aligned_cols=220 Identities=33% Similarity=0.551 Sum_probs=185.4
Q ss_pred cceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeecCC--C
Q 000846 342 RGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP-----VEGEVLLDGYKIRR--L 414 (1255)
Q Consensus 342 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~ 414 (1255)
.+.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 446999999999963 3599999999999999999999999999999999999884 89999999999864 3
Q ss_pred CHHHHhcccEEeccCCccCcccHHHHhccCCC--CC-CH----HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChH
Q 000846 415 HLKWLRSQMGLVNQEPVLFATSITENILFGKD--GA-SM----DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGG 487 (1255)
Q Consensus 415 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 487 (1255)
+...+|+.++|++|++.+|+.|++||+.++.. .. .. +++.++++..++.+ .+.+..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWD-------EVKDRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCh-------hHHHHhhCCcccCCHH
Confidence 45677889999999999998899999987532 11 11 12233333333222 2224566778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChh
Q 000846 488 QKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHN 566 (1255)
Q Consensus 488 qrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~ 566 (1255)
||||++||||++++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 99999999999999999999999999999999999999998877899999999999975 59999999999999999999
Q ss_pred HHhcc
Q 000846 567 ELMNR 571 (1255)
Q Consensus 567 ~l~~~ 571 (1255)
++...
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 98754
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=373.21 Aligned_cols=220 Identities=31% Similarity=0.508 Sum_probs=183.7
Q ss_pred eEEEEeEEEEcCCCC---CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCC-HHHH
Q 000846 344 EIEFRDVYFCYPSRP---DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH-LKWL 419 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~---~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~ 419 (1255)
.|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 246999999999999999999999999999999999999999999999999987643 3567
Q ss_pred hcccEEeccCCc--cCcccHHHHhccCCCC--CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHH
Q 000846 420 RSQMGLVNQEPV--LFATSITENILFGKDG--ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIA 495 (1255)
Q Consensus 420 r~~i~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lA 495 (1255)
+++++|++|+|. ++..|+.||+.|+... ....+..+ .+.+.++.+ |+.........+||||||||++||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~la 156 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE-----RVDESLKKV--GMYEYRRHAPHLLSGGQKQRVAIA 156 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHH-----HHHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHH
Confidence 889999999984 6667999999886321 12221111 112223333 444445555679999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhc
Q 000846 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 496 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
|||+.+|+++||||||++||+.++..+.+.|+++. .|+|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999874 3899999999999987799999999999999999999875
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=368.11 Aligned_cols=218 Identities=29% Similarity=0.466 Sum_probs=181.9
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhccc--CC---CccEEEECCeecCCC--CH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFY--DP---VEGEVLLDGYKIRRL--HL 416 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~--~~---~~G~i~~~g~~~~~~--~~ 416 (1255)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|++ .| ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999973 35999999999999999999999999999999999995 36 599999999998643 34
Q ss_pred HHHhcccEEeccCCccCcccHHHHhccCCC--CCC-H----HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHH
Q 000846 417 KWLRSQMGLVNQEPVLFATSITENILFGKD--GAS-M----DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQK 489 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~~-~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqr 489 (1255)
..+|+.++||+|++.+|+.|++||+.++.. ... . +++.++++..++.+ ++.+..+....+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD-------EVKDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCch-------hHHHHHhcCcccCCHHHH
Confidence 567889999999999999999999986521 111 1 11222222222211 223445677789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 000846 490 QRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 490 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l 568 (1255)
||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999875 5999999999999999999998
Q ss_pred hcc
Q 000846 569 MNR 571 (1255)
Q Consensus 569 ~~~ 571 (1255)
.+.
T Consensus 235 ~~~ 237 (252)
T PRK14239 235 FMN 237 (252)
T ss_pred HhC
Confidence 764
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=368.64 Aligned_cols=220 Identities=30% Similarity=0.488 Sum_probs=185.4
Q ss_pred cceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeecCC--C
Q 000846 342 RGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKIRR--L 414 (1255)
Q Consensus 342 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~ 414 (1255)
...|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.+||+++.. .
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 346999999999963 469999999999999999999999999999999999996 589999999999864 3
Q ss_pred CHHHHhcccEEeccCCccCcccHHHHhccCCCC--C-CH----HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChH
Q 000846 415 HLKWLRSQMGLVNQEPVLFATSITENILFGKDG--A-SM----DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGG 487 (1255)
Q Consensus 415 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 487 (1255)
+...+|+.++|++|++.+|..|++||+.++... . .. +++.++++..++.+ +.++..+..+.+||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD-------QVKDDLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCc-------hhhhhhcCCcccCCHH
Confidence 455678899999999999989999999875321 1 11 11222233333221 2234566778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChh
Q 000846 488 QKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHN 566 (1255)
Q Consensus 488 qrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~ 566 (1255)
||||++||||++++|++|||||||++||+.+.+.+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877899999999999885 59999999999999999999
Q ss_pred HHhcc
Q 000846 567 ELMNR 571 (1255)
Q Consensus 567 ~l~~~ 571 (1255)
++...
T Consensus 248 ~~~~~ 252 (267)
T PRK14237 248 NIFTN 252 (267)
T ss_pred HHhcC
Confidence 98753
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=372.19 Aligned_cols=219 Identities=31% Similarity=0.549 Sum_probs=184.2
Q ss_pred EEEEeEEEEcCCCC--CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCC----CHHH
Q 000846 345 IEFRDVYFCYPSRP--DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL----HLKW 418 (1255)
Q Consensus 345 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~~ 418 (1255)
|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 13699999999999999999999999999999999999999999999999998754 3456
Q ss_pred HhcccEEeccCC--ccCcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCccc-chhcCCCCCCChHHHHHHH
Q 000846 419 LRSQMGLVNQEP--VLFATSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYE-TQVGQLGFQMSGGQKQRIA 493 (1255)
Q Consensus 419 ~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqrqri~ 493 (1255)
+|+.|+|++|+| .+|+.|++||+.++.. ..+.++..+. +.+.++.+ |++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 5788899999987532 1222222211 22334444 554 3456677899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 494 IARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 494 lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
|||||+.+|++|||||||++||+++++.+.+.|+++. +|+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998875 4899999999999885 599999999999999999998865
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=370.78 Aligned_cols=218 Identities=29% Similarity=0.539 Sum_probs=183.6
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
-++++|++++|++. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++++
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 3599999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEeccCCc--cCcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhc
Q 000846 424 GLVNQEPV--LFATSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALI 499 (1255)
Q Consensus 424 ~~v~Q~~~--l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~ 499 (1255)
+||+|+|. +|+.|++||+.++.. ..+.++..+ .+.+.+..+ |+..........||||||||++|||||+
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrl~laraL~ 153 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH-----RVSSALHML--GLEELRDRVPHHLSGGEKKRVAIAGVIA 153 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999983 677899999987532 122221111 112333333 4444445556799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 500 RDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 500 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
.+|++|||||||++||+.+.+.+.+.++++.+ |+|+|++||+++.+. .||+|++|++|++++.|+++++++
T Consensus 154 ~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999999999999988753 899999999999985 699999999999999999999875
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=379.27 Aligned_cols=222 Identities=25% Similarity=0.425 Sum_probs=179.5
Q ss_pred eEEEEeEEEEcCCCCC-CccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC----CCccEEEECCeecCCCCHHH
Q 000846 344 EIEFRDVYFCYPSRPD-TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD----PVEGEVLLDGYKIRRLHLKW 418 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~----~~~G~i~~~g~~~~~~~~~~ 418 (1255)
-++++|+++.|+.... ..+|+||||+|++||+++|||+||||||||+++|+|+++ |++|+|.++|+++..++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999974321 359999999999999999999999999999999999997 48999999999998887665
Q ss_pred Hh----cccEEeccCCc--cCcc-cHHHHhccCC---CCCCHHHHHHHHHHhchHHHHhcCCCccc---chhcCCCCCCC
Q 000846 419 LR----SQMGLVNQEPV--LFAT-SITENILFGK---DGASMDDVISAAKAANAHDFITKLPDGYE---TQVGQLGFQMS 485 (1255)
Q Consensus 419 ~r----~~i~~v~Q~~~--l~~~-ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~---t~~~~~g~~LS 485 (1255)
++ +.|+||+|+|. +++. |+.+|+.... .....++.. ..+.+.++.+ |++ ...+..+.+||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~-----~~~~~~L~~~--gL~~~~~~l~~~p~~LS 155 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRR-----QRAIDLLNQV--GIPDPASRLDVYPHQLS 155 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChHHHHhCCchhCC
Confidence 43 37999999994 4433 6666554211 011111111 1122334443 442 34567788999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEe
Q 000846 486 GGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVES 562 (1255)
Q Consensus 486 gGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~ 562 (1255)
|||||||+|||||+.+|++||+||||++||+.++..+.+.|+++.+ |.|+|+|||+++.+. .||+|++|++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998853 899999999999985 5999999999999999
Q ss_pred cChhHHhccC
Q 000846 563 GSHNELMNRG 572 (1255)
Q Consensus 563 g~~~~l~~~~ 572 (1255)
|+++++.+++
T Consensus 236 g~~~~~~~~p 245 (326)
T PRK11022 236 GKAHDIFRAP 245 (326)
T ss_pred CCHHHHhhCC
Confidence 9999998764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=373.82 Aligned_cols=222 Identities=28% Similarity=0.489 Sum_probs=183.5
Q ss_pred cceEEEEeEEEEcCCCC--CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCC----C-
Q 000846 342 RGEIEFRDVYFCYPSRP--DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRR----L- 414 (1255)
Q Consensus 342 ~~~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~----~- 414 (1255)
.+.|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35799999999997432 1359999999999999999999999999999999999999999999999998852 2
Q ss_pred CHHHHhcccEEeccCC--ccCcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcc-cchhcCCCCCCChHHH
Q 000846 415 HLKWLRSQMGLVNQEP--VLFATSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGY-ETQVGQLGFQMSGGQK 489 (1255)
Q Consensus 415 ~~~~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~-~t~~~~~g~~LSgGqr 489 (1255)
+...+|+.|+|++|+| .+|..|++||+.++.. ....++..+. +.+.++.+ |+ +........+||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~ll~~~--~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK-----VPELLKLV--QLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhcCChhhCCHHHH
Confidence 3456788999999998 4677899999987532 1222222211 12233333 44 2345567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChh
Q 000846 490 QRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHN 566 (1255)
Q Consensus 490 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~ 566 (1255)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999998874 3899999999999875 59999999999999999998
Q ss_pred HHhc
Q 000846 567 ELMN 570 (1255)
Q Consensus 567 ~l~~ 570 (1255)
++..
T Consensus 237 ~~~~ 240 (289)
T PRK13645 237 EIFS 240 (289)
T ss_pred HHhc
Confidence 8865
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=366.92 Aligned_cols=220 Identities=26% Similarity=0.458 Sum_probs=183.2
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC--C---CccEEEECCeecCCC--C
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD--P---VEGEVLLDGYKIRRL--H 415 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~--~---~~G~i~~~g~~~~~~--~ 415 (1255)
+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++... .
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56999999999973 359999999999999999999999999999999999986 4 689999999998643 3
Q ss_pred HHHHhcccEEeccCCccCc-ccHHHHhccCCCC---CCHH----HHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChH
Q 000846 416 LKWLRSQMGLVNQEPVLFA-TSITENILFGKDG---ASMD----DVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGG 487 (1255)
Q Consensus 416 ~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 487 (1255)
...+|+.++|++|++.+|. .|++||+.++... ...+ ++.++++..++.+. +....+..+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDE-------VKDRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhHHhhCCcCcCCHH
Confidence 4567889999999999998 4999999865311 1111 12222333332211 122345667899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChh
Q 000846 488 QKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHN 566 (1255)
Q Consensus 488 qrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~ 566 (1255)
||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999877899999999999985 59999999999999999999
Q ss_pred HHhccC
Q 000846 567 ELMNRG 572 (1255)
Q Consensus 567 ~l~~~~ 572 (1255)
++...+
T Consensus 233 ~~~~~~ 238 (252)
T PRK14256 233 KIFTTP 238 (252)
T ss_pred HHHhCC
Confidence 987653
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=368.46 Aligned_cols=220 Identities=31% Similarity=0.496 Sum_probs=182.6
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcc---cCC--CccEEEECCeecCCC--CH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRF---YDP--VEGEVLLDGYKIRRL--HL 416 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~---~~~--~~G~i~~~g~~~~~~--~~ 416 (1255)
.|+++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5899999999963 3599999999999999999999999999999999997 454 589999999998754 34
Q ss_pred HHHhcccEEeccCCccCcccHHHHhccCCCC--CC-HHHHHHHHHHhchHHHHhcC--CCcccchhcCCCCCCChHHHHH
Q 000846 417 KWLRSQMGLVNQEPVLFATSITENILFGKDG--AS-MDDVISAAKAANAHDFITKL--PDGYETQVGQLGFQMSGGQKQR 491 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~-~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqrqr 491 (1255)
..++++++|+||++.+|..|++||+.++... .. .+...+ .+.+.++.+ ++.+.+.....+.+||||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQ-----RVEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHH-----HHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 5678899999999999988999999875321 11 111111 112223322 1122345567788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 492 IAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 492 i~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999999999877899999999999985 599999999999999999999976
Q ss_pred c
Q 000846 571 R 571 (1255)
Q Consensus 571 ~ 571 (1255)
+
T Consensus 235 ~ 235 (250)
T PRK14245 235 N 235 (250)
T ss_pred C
Confidence 4
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=332.54 Aligned_cols=215 Identities=29% Similarity=0.464 Sum_probs=182.6
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
+++.+++.+|++ ...+++||||+++.||.+||.|+|||||||+++.|..|+.|++|+|+|||.|+.. ++...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 678999999974 3458999999999999999999999999999999999999999999999999988 5678899999
Q ss_pred EEccCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHcc--ccccccccCCCCCCCChHHHHHHHHHHHHc
Q 000846 1089 LVSQEPTLFA-GTIRENIAYGKA--DARESEIKKAAVLANAHEFISGM--KDGYDTYCGERGVQLSGGQKQRIALARAIL 1163 (1255)
Q Consensus 1089 ~V~Qdp~LF~-gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~i~~l--p~gldt~vge~G~~LSgGQkQrlalARALl 1163 (1255)
+++-+.-|+. .|.||||.|... +.+..++. +.+.+....| .+-+|..+ .+||-|+|||++|||||+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~k-----ari~~l~k~l~l~~~~~rRv----~~~S~G~kqkV~iARAlv 149 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIK-----ARIAELSKRLQLLEYLDRRV----GEFSTGMKQKVAIARALV 149 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHH-----HHHHHHHHHhChHHHHHHHH----hhhchhhHHHHHHHHHHh
Confidence 9997777775 599999987532 23333331 2222333322 12244444 459999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1164 KNPSILLLDEATSALDSVSESLVQEALEKMMM-GRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1164 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
++|+|++||||||+||.-+.+.+++-|.+... |++||+-||-++.++ -||+|+++.+|+++..|+++++.+.
T Consensus 150 h~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 150 HDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred cCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999999999999875 999999999999998 5999999999999999999999764
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=348.51 Aligned_cols=178 Identities=40% Similarity=0.661 Sum_probs=165.0
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 4789999999743 23699999999999999999999999999999999999999999999999988765 566788999
Q ss_pred EeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 000846 425 LVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKI 504 (1255)
Q Consensus 425 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~i 504 (1255)
|++|+|.+|+.|++||+ +.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 458999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 000846 505 LLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESG 563 (1255)
Q Consensus 505 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g 563 (1255)
|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887789999999999999889999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=378.15 Aligned_cols=216 Identities=27% Similarity=0.462 Sum_probs=181.6
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 5899999999963 3599999999999999999999999999999999999999999999999998653 35668899
Q ss_pred EEeccCCccCc-ccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhcc
Q 000846 424 GLVNQEPVLFA-TSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIR 500 (1255)
Q Consensus 424 ~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~ 500 (1255)
||+||++.++. .|++||+.+... ..+..+..+.+ .+.++.+ |+.........+||||||||++|||||+.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 99999999886 599999974211 12222222211 2233333 44444555667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 501 DPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 501 ~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
+|++|||||||++||+.++..+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999874 4899999999999986 599999999999999999999865
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=369.34 Aligned_cols=212 Identities=27% Similarity=0.423 Sum_probs=183.4
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCC--------CceEEECCeecCCCCH
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL--------KGSVFMDEQDIRNYNL 1080 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~--------~G~I~idG~di~~i~~ 1080 (1255)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999953 46999999999999999999999999999999999999998 9999999999988888
Q ss_pred HHHhcceEEEccCCC-CCcccHHHHHhcCCC-C------CC---HHHHHHHHHHhcHHHHHHccccccccccCCCCCCCC
Q 000846 1081 KQLRSHIALVSQEPT-LFAGTIRENIAYGKA-D------AR---ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLS 1149 (1255)
Q Consensus 1081 ~~lR~~i~~V~Qdp~-LF~gTIreNl~~g~~-~------~~---~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 1149 (1255)
..+|+.++|+||++. +|..|++||+.++.. . .+ .+.+.++++.. |+++.++....+||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA-----------GATALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc-----------CcHhhhcCCcccCC
Confidence 888889999999986 678899999987531 1 01 11233333333 44455566678899
Q ss_pred hHHHHHHHHHHHHc---------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEE
Q 000846 1150 GGQKQRIALARAIL---------KNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQ-KSDTIAV 1217 (1255)
Q Consensus 1150 gGQkQrlalARALl---------r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~V 1217 (1255)
||||||++|||||+ .+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+. .||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998753 789999999999986 5999999
Q ss_pred EeCCEEEEecCHHHHHh
Q 000846 1218 IKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1218 l~~G~ive~G~~~eLl~ 1234 (1255)
|++|++++.|+++++++
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999999865
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=378.82 Aligned_cols=226 Identities=20% Similarity=0.329 Sum_probs=185.3
Q ss_pred EEEEEEEEECCCCC-CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC----CCCceEEECCeecCCCCHHHH
Q 000846 1009 IELKNVFFAYPTRP-DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD----PLKGSVFMDEQDIRNYNLKQL 1083 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~-~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~----p~~G~I~idG~di~~i~~~~l 1083 (1255)
|+++|++++|+.+. +..+|+||||+|++||++||||+||||||||+++|+|+.+ |++|+|.+||.++.+++...+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 89999999996421 2469999999999999999999999999999999999986 589999999999998887655
Q ss_pred h----cceEEEccCCC--CC-cccHHHHHhcCCC----------C--CCHHHHHHHHHHhcHHHHHHccccccccccCCC
Q 000846 1084 R----SHIALVSQEPT--LF-AGTIRENIAYGKA----------D--ARESEIKKAAVLANAHEFISGMKDGYDTYCGER 1144 (1255)
Q Consensus 1084 R----~~i~~V~Qdp~--LF-~gTIreNl~~g~~----------~--~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~ 1144 (1255)
+ ++|+||||+|. ++ ..||.+|+..... . ...+++.++++..++.+.- ......
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~~ 155 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRSF 155 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhCC
Confidence 3 47999999996 33 3589999853210 0 0123344555555553210 112344
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCC
Q 000846 1145 GVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNG 1221 (1255)
Q Consensus 1145 G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G 1221 (1255)
..+||||||||++|||||+.+|+|||||||||+||+.+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 568999999999999999999999999999999999999999999998763 7999999999999965 9999999999
Q ss_pred EEEEecCHHHHHhhhcCchhHH
Q 000846 1222 RVVEQGSHNELVALSRGGAYYS 1243 (1255)
Q Consensus 1222 ~ive~G~~~eLl~~~~~g~y~~ 1243 (1255)
+|+|.|+++++++. +...|.+
T Consensus 236 ~ive~g~~~~i~~~-p~~~y~~ 256 (330)
T PRK15093 236 QTVETAPSKELVTT-PHHPYTQ 256 (330)
T ss_pred EEEEECCHHHHHhC-CCCHHHH
Confidence 99999999999875 5566765
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=379.97 Aligned_cols=217 Identities=28% Similarity=0.480 Sum_probs=182.3
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+ ...++.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999973 35999999999999999999999999999999999999999999999999987654 4678899
Q ss_pred EEeccCCccCc-ccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhcc
Q 000846 424 GLVNQEPVLFA-TSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIR 500 (1255)
Q Consensus 424 ~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~ 500 (1255)
||+||++.++. .|++||+.+... .....+..+. +.++++.+ |++........+||||||||++|||||+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~--~L~~~~~~~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEFA--RLESKADARVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhCCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999875 599999975221 1122222211 12233322 44444455567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhcc
Q 000846 501 DPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 501 ~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999875 4899999999999986 4999999999999999999998753
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=378.63 Aligned_cols=229 Identities=26% Similarity=0.465 Sum_probs=185.1
Q ss_pred eEEEEeEEEEcCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCC---ccEEEECCeecCCCCHHHH
Q 000846 344 EIEFRDVYFCYPSRP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV---EGEVLLDGYKIRRLHLKWL 419 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~ 419 (1255)
-++++|++++|+... ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 589999999996422 246999999999999999999999999999999999999996 9999999999998876654
Q ss_pred ---h-cccEEeccCC--ccCcc-cHHHHhccCC---CCCCHHHHHHHHHHhchHHHHh--cCCCcccchhcCCCCCCChH
Q 000846 420 ---R-SQMGLVNQEP--VLFAT-SITENILFGK---DGASMDDVISAAKAANAHDFIT--KLPDGYETQVGQLGFQMSGG 487 (1255)
Q Consensus 420 ---r-~~i~~v~Q~~--~l~~~-ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~t~~~~~g~~LSgG 487 (1255)
| ++|+||+|+| .+++. |+.+|+.... ...+.++..+. +.+.++ .+|++. ..++..+.+||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~-----~~~~L~~vgL~~~~-~~~~~~p~~LSgG 165 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEE-----SVRMLDAVKMPEAR-KRMKMYPHEFSGG 165 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHcCCCChH-HHhcCCcccCCHH
Confidence 3 4799999999 45553 8888775321 11222222111 112222 234332 3357788999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecC
Q 000846 488 QKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGS 564 (1255)
Q Consensus 488 qrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~ 564 (1255)
||||++|||||+.+|++||+|||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+. .||+|+||++|+|+|.|+
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999998854 899999999999986 599999999999999999
Q ss_pred hhHHhccCCCChhHH
Q 000846 565 HNELMNRGEGGEYYQ 579 (1255)
Q Consensus 565 ~~~l~~~~~~~~~~~ 579 (1255)
++++.+++. ..|.+
T Consensus 246 ~~~i~~~p~-~pyt~ 259 (330)
T PRK09473 246 ARDVFYQPS-HPYSI 259 (330)
T ss_pred HHHHHhCCC-CHHHH
Confidence 999987643 33443
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=337.75 Aligned_cols=219 Identities=30% Similarity=0.468 Sum_probs=187.2
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHH-Hhcce
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ-LRSHI 1087 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~i 1087 (1255)
++++|++..|.. ..+|++|||++++||.++++||||+||||++++|+|+.+|.+|+|.++|.||...+++. .|..|
T Consensus 4 L~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 4 LEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred eeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 789999999963 46999999999999999999999999999999999999999999999999999999876 58889
Q ss_pred EEEccCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 000846 1088 ALVSQEPTLFA-GTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNP 1166 (1255)
Q Consensus 1088 ~~V~Qdp~LF~-gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p 1166 (1255)
+||||...+|. -||.|||.+|.-...+++-++ ..+++.-+-+| -|.......+.+|||||+|.+||||||+.+|
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~P 155 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSRP 155 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcCC
Confidence 99999999997 599999987742212111111 01222223344 3555566778899999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1167 SILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1167 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
++|+|||||.+|-|.--+.|.++|+++.+ +.||++|-++..... -+||.+||++|+|+..|+.+||.++
T Consensus 156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999999874 569999999999875 5999999999999999999999874
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=363.18 Aligned_cols=214 Identities=25% Similarity=0.422 Sum_probs=171.8
Q ss_pred EEEEEEEEECCCCC-CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCeecCCCCHHHHh
Q 000846 1009 IELKNVFFAYPTRP-DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD---PLKGSVFMDEQDIRNYNLKQLR 1084 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~-~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~~~~lR 1084 (1255)
++|+||+|+|++.. .+++|+|+||+|++||++||+||||||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999998542 3579999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cceEEEccCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHH-HHHccccccccccCCCCCCCChHHHHHHHHHHHH
Q 000846 1085 SHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHE-FISGMKDGYDTYCGERGVQLSGGQKQRIALARAI 1162 (1255)
Q Consensus 1085 ~~i~~V~Qdp~LF~g-TIreNl~~g~~~~~~~ei~~al~~a~l~~-~i~~lp~gldt~vge~G~~LSgGQkQrlalARAL 1162 (1255)
++++|+||++.+|.+ |++||+.++..........++......++ .+..+ +++........+||||||||++|||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 899999999999987 99999986421110000001111111111 22221 333333445678999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCc-hhh-hhcCEEEEEeCCEEEEec
Q 000846 1163 LKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRL-STI-QKSDTIAVIKNGRVVEQG 1227 (1255)
Q Consensus 1163 lr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl-~ti-~~~D~I~Vl~~G~ive~G 1227 (1255)
+++|+||||||||++||+.+.+.+.+.|++.. +++|+|++||++ +.+ ..||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999875 478999999998 355 569999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=359.89 Aligned_cols=207 Identities=29% Similarity=0.513 Sum_probs=173.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 478999999974 3599999999999999999999999999999999999999999999999998765432 46899
Q ss_pred EeccCCccCc-ccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccC
Q 000846 425 LVNQEPVLFA-TSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501 (1255)
Q Consensus 425 ~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~ 501 (1255)
|++|++.+|. .|++||+.++.. ....++..+ .+.+.++.+ |++........+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999986 599999987532 112222111 122334444 555555666789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 000846 502 PKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESG 563 (1255)
Q Consensus 502 ~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g 563 (1255)
|+++||||||++||+++.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999874 38999999999998865 9999999999999875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=382.41 Aligned_cols=210 Identities=29% Similarity=0.449 Sum_probs=181.6
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCC----CHHHHh
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNY----NLKQLR 1084 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~~~~lR 1084 (1255)
|++ |++++|++ . .+ |+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +....|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999953 2 23 89999999999999999999999999999999999999999999998653 244568
Q ss_pred cceEEEccCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHc
Q 000846 1085 SHIALVSQEPTLFA-GTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAIL 1163 (1255)
Q Consensus 1085 ~~i~~V~Qdp~LF~-gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALl 1163 (1255)
++++||||++.+|. .|++||+.++......+++.+.++..++.++. .....+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLL-----------DRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHHHHHH
Confidence 89999999999996 59999999875433445566666666554433 3345689999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1164 KNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1164 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
++|++||||||||+||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 99999999999999999999999999998754 7899999999998865 999999999999999999999875
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=364.73 Aligned_cols=212 Identities=30% Similarity=0.498 Sum_probs=179.9
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHH-Hhccc
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW-LRSQM 423 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 423 (1255)
|+++||++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 478999999973 36999999999999999999999999999999999999999999999999998776544 46789
Q ss_pred EEeccCCccCcc-cHHHHhccCCCCC--CHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhcc
Q 000846 424 GLVNQEPVLFAT-SITENILFGKDGA--SMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIR 500 (1255)
Q Consensus 424 ~~v~Q~~~l~~~-ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~ 500 (1255)
+|++|++.+|.. |++||+.++.... ..++. ..+.+..+ ++++........+||||||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~--------~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKI--------PDEIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHH--------HHHHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 9999998754221 11111 11222222 123444566778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 000846 501 DPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 501 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l 568 (1255)
+|+++||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999988753 7999999999999875 999999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=366.79 Aligned_cols=218 Identities=28% Similarity=0.469 Sum_probs=184.1
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeecCC--CCH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKIRR--LHL 416 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 416 (1255)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999963 359999999999999999999999999999999999986 489999999998853 345
Q ss_pred HHHhcccEEeccCCccCcccHHHHhccCCCCC--C---HHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHH
Q 000846 417 KWLRSQMGLVNQEPVLFATSITENILFGKDGA--S---MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQR 491 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqr 491 (1255)
..++++++|++|++.+|+.|++||+.++.... . .+++.++++.+++.+.+ +...+..+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV-------KDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhH-------HHHhcCCcccCCHHHHHH
Confidence 67788999999999999889999998764211 1 12233333444433322 223466778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEe---------CCEEEE
Q 000846 492 IAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLK---------AGKVVE 561 (1255)
Q Consensus 492 i~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~---------~G~i~~ 561 (1255)
++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999999999999998877789999999999885 599999998 899999
Q ss_pred ecChhHHhcc
Q 000846 562 SGSHNELMNR 571 (1255)
Q Consensus 562 ~g~~~~l~~~ 571 (1255)
.|+++++.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999999764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=357.11 Aligned_cols=202 Identities=32% Similarity=0.544 Sum_probs=174.3
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
++++||+++|+. .++|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ .+|+.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999952 468999999999999999999999999999999999999999999999987643 4678899
Q ss_pred EEccCCCCCcc-cHHHHHhcCC-CC-----CCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHH
Q 000846 1089 LVSQEPTLFAG-TIRENIAYGK-AD-----ARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161 (1255)
Q Consensus 1089 ~V~Qdp~LF~g-TIreNl~~g~-~~-----~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARA 1161 (1255)
||||+|.+|.+ |++||+.++. +. ..++++.++++..++.+..... ..+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRL-----------PEQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCC-----------cccCCHHHHHHHHHHHH
Confidence 99999999874 9999997642 11 1234556666666665554443 34799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 000846 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGS 1228 (1255)
Q Consensus 1162 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~ 1228 (1255)
++++|+|+||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999998753 7899999999999865 99999999999999875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=367.06 Aligned_cols=216 Identities=23% Similarity=0.370 Sum_probs=175.4
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc--cCCCCceEEECCeecCCCCHHHH-hc
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERF--YDPLKGSVFMDEQDIRNYNLKQL-RS 1085 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl--~~p~~G~I~idG~di~~i~~~~l-R~ 1085 (1255)
|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|.|+ ++|++|+|.+||.++...+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999963 4699999999999999999999999999999999999 47999999999999988877664 45
Q ss_pred ceEEEccCCCCCcc-cHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHccccccccc-cCCCCC-CCChHHH
Q 000846 1086 HIALVSQEPTLFAG-TIRENIAYGKAD---------ARESEIKKAAVLANAHEFISGMKDGYDTY-CGERGV-QLSGGQK 1153 (1255)
Q Consensus 1086 ~i~~V~Qdp~LF~g-TIreNl~~g~~~---------~~~~ei~~al~~a~l~~~i~~lp~gldt~-vge~G~-~LSgGQk 1153 (1255)
.++||||+|.+|.+ |++||+.+.... .+.++.. ..+.+.+..+ |++.. ...... .||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLALL--GMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHHc--CCchhhcccccccCcCHHHH
Confidence 69999999998875 899999653210 0111111 1122222222 23211 122233 5999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh--cCEEEEEeCCEEEEecCHH
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK--SDTIAVIKNGRVVEQGSHN 1230 (1255)
Q Consensus 1154 QrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~--~D~I~Vl~~G~ive~G~~~ 1230 (1255)
||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999999875 47899999999999976 7999999999999999998
Q ss_pred HHHh
Q 000846 1231 ELVA 1234 (1255)
Q Consensus 1231 eLl~ 1234 (1255)
++-.
T Consensus 231 ~~~~ 234 (243)
T TIGR01978 231 LAKE 234 (243)
T ss_pred Hhcc
Confidence 7643
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=362.33 Aligned_cols=209 Identities=33% Similarity=0.518 Sum_probs=173.5
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 345 IEFRDVYFCYPSRP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 345 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999997411 1469999999999999999999999999999999999999999999999998863 35789
Q ss_pred EEeccCCccCc-ccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhcc
Q 000846 424 GLVNQEPVLFA-TSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIR 500 (1255)
Q Consensus 424 ~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~ 500 (1255)
+||+|+|.+|. .|++||+.++.. ....++. ...+.+.++.+ |++........+||||||||++|||||+.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEA-----RERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999987 599999987532 1111111 11223344444 55555566667999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-hcCEEEEEe--CCEEEEecCh
Q 000846 501 DPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIR-TANLIMVLK--AGKVVESGSH 565 (1255)
Q Consensus 501 ~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~vl~--~G~i~~~g~~ 565 (1255)
+|+++||||||++||+.++..+.+.|+++. .|+|+|++||+++.+. .||++++|+ +|++++.++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999998873 3799999999999875 599999999 7999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=364.62 Aligned_cols=204 Identities=33% Similarity=0.490 Sum_probs=175.1
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++++
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 5999999999963 35999999999999999999999999999999999999999999999998753 457789
Q ss_pred EEeccCCccCc-ccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 000846 424 GLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDP 502 (1255)
Q Consensus 424 ~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~ 502 (1255)
+|++|++.+|+ .|++||+.++......+++.++ ++.+ |+.........+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~---------l~~~--gl~~~~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQA---------LAAV--GLADRANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHH---------HHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 5999999876432112233333 3333 4544556667899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChh
Q 000846 503 KILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHN 566 (1255)
Q Consensus 503 ~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~ 566 (1255)
++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+++++|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998873 3799999999999875 59999999999999988754
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=366.83 Aligned_cols=221 Identities=26% Similarity=0.449 Sum_probs=184.2
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeecCC--CCH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKIRR--LHL 416 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 416 (1255)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999973 359999999999999999999999999999999999987 699999999999853 345
Q ss_pred HHHhcccEEeccCCccCcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcC--CCcccchhcCCCCCCChHHHHHH
Q 000846 417 KWLRSQMGLVNQEPVLFATSITENILFGKD--GASMDDVISAAKAANAHDFITKL--PDGYETQVGQLGFQMSGGQKQRI 492 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqrqri 492 (1255)
..++++++|++|+|.+|..|++||+.++.. ...+++..+ ..+.+.+..+ .+++.......+.+||||||||+
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv 176 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLD----EIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL 176 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHH----HHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH
Confidence 567889999999999998999999987531 111111111 0111112211 12344456677889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhcc
Q 000846 493 AIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 493 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 256 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN 256 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 999999999999999999999999999999999999877899999999999986 5999999999999999999998764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=363.36 Aligned_cols=213 Identities=32% Similarity=0.518 Sum_probs=175.8
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCH---HHHh
Q 000846 345 IEFRDVYFCYPSRP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHL---KWLR 420 (1255)
Q Consensus 345 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r 420 (1255)
|+++||+++|++.. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996421 1269999999999999999999999999999999999999999999999999987763 5678
Q ss_pred cccEEeccCC--ccC-cccHHHHhccCCCC---CCHHHHHHHHHHhchHHHHhcCCCccc-chhcCCCCCCChHHHHHHH
Q 000846 421 SQMGLVNQEP--VLF-ATSITENILFGKDG---ASMDDVISAAKAANAHDFITKLPDGYE-TQVGQLGFQMSGGQKQRIA 493 (1255)
Q Consensus 421 ~~i~~v~Q~~--~l~-~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqrqri~ 493 (1255)
++++|++|+| .++ ..|++||+.++... ...++..+.+ +.+.+..+ |+. ........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH----HHHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence 8999999999 344 46999999764211 1111111100 12344444 553 4567778899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 000846 494 IARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESG 563 (1255)
Q Consensus 494 lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g 563 (1255)
|||||+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+. .||+|++|++|++++.|
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998753 899999999999987 59999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=367.28 Aligned_cols=213 Identities=26% Similarity=0.428 Sum_probs=183.5
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++++.+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 3789999999973 4699999999999999999999999999999999999999999999999999887777888899
Q ss_pred EEeccCCccCcc-cHHHHhccCCCCC-------C---HHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHH
Q 000846 424 GLVNQEPVLFAT-SITENILFGKDGA-------S---MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRI 492 (1255)
Q Consensus 424 ~~v~Q~~~l~~~-ti~~ni~~~~~~~-------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri 492 (1255)
+|++|++.++.+ |+.||+.++.... . .+++.++ +..+ |++.........||||||||+
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LS~G~~qrv 147 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQA---------MEQT--RINHLADRRLTDLSGGQRQRA 147 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHH---------HHHc--CCHHHHcCCcccCCHHHHHHH
Confidence 999999998876 9999998763210 1 1122222 3332 444445566789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 493 AIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 493 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
+||||++.+|++|||||||++||+++.+.+.+.|+++. +|+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 99999999999999999999999999999999998875 4899999999999985 599999999999999999988864
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=366.66 Aligned_cols=226 Identities=26% Similarity=0.397 Sum_probs=184.2
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCC----CCceEEECCeecCCCCHHHH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP----LKGSVFMDEQDIRNYNLKQL 1083 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p----~~G~I~idG~di~~i~~~~l 1083 (1255)
.|+++||+++| + .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.+++.. +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 2 3599999999999999999999999999999999999999 999999999998632 223
Q ss_pred hcceEEEccCCC-CCc--ccHHHHHhcC----CCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHH
Q 000846 1084 RSHIALVSQEPT-LFA--GTIRENIAYG----KADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRI 1156 (1255)
Q Consensus 1084 R~~i~~V~Qdp~-LF~--gTIreNl~~g----~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrl 1156 (1255)
++.|+||||+|. .|. .|+.+|+.+. .....++++.++++..++.++ ++.++....+||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999985 443 5888887431 112233455566665554321 1234556778999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHH
Q 000846 1157 ALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1157 alARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl 1233 (1255)
+|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.+ ||++++|++|++++.|++++++
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999999864 9999999999999999999998
Q ss_pred hhhcCc-hhHHHHhhh
Q 000846 1234 ALSRGG-AYYSLIKPQ 1248 (1255)
Q Consensus 1234 ~~~~~g-~y~~l~~~~ 1248 (1255)
+. +.. .++.++..+
T Consensus 230 ~~-~~~~~~~~~~~~~ 244 (254)
T PRK10418 230 NA-PKHAVTRSLVSAH 244 (254)
T ss_pred hC-CCCHHHHHHHHhh
Confidence 64 333 444455544
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=368.67 Aligned_cols=219 Identities=29% Similarity=0.494 Sum_probs=184.8
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999743 24599999999999999999999999999999999999999999999999999888877888999
Q ss_pred EEeccCCc-cC-cccHHHHhccCCCC--CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhc
Q 000846 424 GLVNQEPV-LF-ATSITENILFGKDG--ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALI 499 (1255)
Q Consensus 424 ~~v~Q~~~-l~-~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~ 499 (1255)
+|++|+|. +| ..|+++|+.++... ...++..+ .+.+.++.+ |+.........+||||||||++||||++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR-----RVSEALKQV--DMLERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999995 44 45899999876421 12222111 112223333 4444455667899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhc
Q 000846 500 RDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 500 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
.+|+++||||||++||+.+.+.+.+.|+++.+ |+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 159 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999988743 799999999999987799999999999999999999865
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=375.96 Aligned_cols=215 Identities=25% Similarity=0.441 Sum_probs=186.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+++++|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 459999999999999999999999999999999999999999999999999876 3456788999
Q ss_pred EeccCCccCcc-cHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccC
Q 000846 425 LVNQEPVLFAT-SITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501 (1255)
Q Consensus 425 ~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~ 501 (1255)
|+||+|.+|.. |++||+.+... ....++..+ .+++.+..+ |++........+||||||||++|||||+++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 99999975321 111122111 123445555 676667777889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhc
Q 000846 502 PKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 502 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
|++|||||||++||+.+.+.+++.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999998778999999999998865 99999999999999999999865
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=367.87 Aligned_cols=217 Identities=28% Similarity=0.520 Sum_probs=180.8
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeecCCCC--HH
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKIRRLH--LK 417 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~~--~~ 417 (1255)
-+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999963 469999999999999999999999999999999999986 47999999999886543 33
Q ss_pred HHhcccEEeccCCccCcccHHHHhccCCC--CC--CH----HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHH
Q 000846 418 WLRSQMGLVNQEPVLFATSITENILFGKD--GA--SM----DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQK 489 (1255)
Q Consensus 418 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqr 489 (1255)
.+|++++|++|++.+|+.|++||+.++.. .. .. +++.++++..++.+. +.+.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-------LGDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhcChhhCCHHHH
Confidence 56889999999999998999999987521 11 11 112222232222111 12345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 000846 490 QRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 490 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l 568 (1255)
||++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999986 5999999999999999999998
Q ss_pred hcc
Q 000846 569 MNR 571 (1255)
Q Consensus 569 ~~~ 571 (1255)
.+.
T Consensus 236 ~~~ 238 (251)
T PRK14244 236 FKN 238 (251)
T ss_pred hcC
Confidence 764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=366.93 Aligned_cols=222 Identities=25% Similarity=0.429 Sum_probs=187.2
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHH-Hhcc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW-LRSQ 422 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 422 (1255)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998776544 3556
Q ss_pred cEEeccCCccCcc-cHHHHhccCCCCCCH----------HHH--HHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHH
Q 000846 423 MGLVNQEPVLFAT-SITENILFGKDGASM----------DDV--ISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQK 489 (1255)
Q Consensus 423 i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~----------~~~--~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqr 489 (1255)
++|++|+|.+|.. |++||+.++...... ... ........+.++++.+ |++........+||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence 9999999999986 999999975321000 000 0001112234556666 777778888899999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChh
Q 000846 490 QRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHN 566 (1255)
Q Consensus 490 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~ 566 (1255)
||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ |+|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 999999999999999999999999999999999999988743 7899999999999854 9999999999999999998
Q ss_pred HHhc
Q 000846 567 ELMN 570 (1255)
Q Consensus 567 ~l~~ 570 (1255)
++..
T Consensus 240 ~~~~ 243 (255)
T PRK11300 240 EIRN 243 (255)
T ss_pred HHhh
Confidence 8764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=368.02 Aligned_cols=231 Identities=32% Similarity=0.506 Sum_probs=188.8
Q ss_pred EEEEEEEEECCCC------CCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCH--
Q 000846 1009 IELKNVFFAYPTR------PDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNL-- 1080 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~------~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~-- 1080 (1255)
|+++||+++|+.. .++++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++..++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8999999999631 13569999999999999999999999999999999999999999999999999988765
Q ss_pred -HHHhcceEEEccCCC--CC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHcccccccc-ccCCCCCCCChHHHHH
Q 000846 1081 -KQLRSHIALVSQEPT--LF-AGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDT-YCGERGVQLSGGQKQR 1155 (1255)
Q Consensus 1081 -~~lR~~i~~V~Qdp~--LF-~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt-~vge~G~~LSgGQkQr 1155 (1255)
..+|+.++|+||++. ++ ..|+++|+.+...... .+..+.....+.+.+..+ |+++ ........||||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge~qr 159 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAV--DLDDSVLDKRPPQLSGGQLQR 159 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHc--CCChhHhhCCCccCChHHHHH
Confidence 347889999999983 44 4699999864211000 000111222344555544 5653 4566778999999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHH
Q 000846 1156 IALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232 (1255)
Q Consensus 1156 lalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eL 1232 (1255)
++|||||+.+|+||||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 160 l~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 239 (268)
T PRK10419 160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDK 239 (268)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhc
Confidence 9999999999999999999999999999999999998753 7899999999999975 999999999999999999999
Q ss_pred HhhhcCchhHHHH
Q 000846 1233 VALSRGGAYYSLI 1245 (1255)
Q Consensus 1233 l~~~~~g~y~~l~ 1245 (1255)
... ++.|..-+
T Consensus 240 ~~~--~~~~~~~~ 250 (268)
T PRK10419 240 LTF--SSPAGRVL 250 (268)
T ss_pred cCC--CCHHHHHH
Confidence 864 55555443
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=364.74 Aligned_cols=218 Identities=31% Similarity=0.470 Sum_probs=183.4
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeecCCC--CH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP-----VEGEVLLDGYKIRRL--HL 416 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 416 (1255)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999963 3599999999999999999999999999999999999875 799999999998653 34
Q ss_pred HHHhcccEEeccCCccCcccHHHHhccCCCC--C-CH----HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHH
Q 000846 417 KWLRSQMGLVNQEPVLFATSITENILFGKDG--A-SM----DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQK 489 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqr 489 (1255)
...++.++|++|++.+|+.|++||+.++... . .. +++.++++..++.+ ++..........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWD-------EVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHHH
Confidence 5678899999999999999999999875321 1 11 12223333333211 222345567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 000846 490 QRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 490 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l 568 (1255)
||++||||++++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999999864 999999999999999999998
Q ss_pred hcc
Q 000846 569 MNR 571 (1255)
Q Consensus 569 ~~~ 571 (1255)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=366.24 Aligned_cols=218 Identities=32% Similarity=0.482 Sum_probs=181.6
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeecCC--CCH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKIRR--LHL 416 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 416 (1255)
.|+++|++|+|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 359999999999999999999999999999999999997 479999999999854 344
Q ss_pred HHHhcccEEeccCCccCcccHHHHhccCCCC--CC-HH----HHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHH
Q 000846 417 KWLRSQMGLVNQEPVLFATSITENILFGKDG--AS-MD----DVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQK 489 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~-~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqr 489 (1255)
..+++.++|++|++.+|+.|++||+.++... .. .+ ++.++++..++++ .........+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK-------ETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCc-------chHHHhccChhhCCHHHH
Confidence 5678899999999999999999999875321 11 11 1222222222210 112334567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 000846 490 QRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 490 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l 568 (1255)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999754 999999999999999999998
Q ss_pred hcc
Q 000846 569 MNR 571 (1255)
Q Consensus 569 ~~~ 571 (1255)
...
T Consensus 234 ~~~ 236 (251)
T PRK14251 234 FIA 236 (251)
T ss_pred HhC
Confidence 754
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=363.70 Aligned_cols=217 Identities=27% Similarity=0.415 Sum_probs=183.5
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 3789999999973 3599999999999999999999999999999999999999999999999999887777778899
Q ss_pred EEeccCCcc-CcccHHHHhccCCCCC--CHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhc-
Q 000846 424 GLVNQEPVL-FATSITENILFGKDGA--SMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALI- 499 (1255)
Q Consensus 424 ~~v~Q~~~l-~~~ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~- 499 (1255)
+|++|++.+ +..|++||+.++.... ..++.. ..+.+.++.+ |++........+||||||||++|||||+
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGe~qrv~la~al~~ 151 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDD-----ALVAAALAQV--DLAHLAGRDYPQLSGGEQQRVQLARVLAQ 151 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHH-----HHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 999999987 5669999998753211 111110 1112333333 4554556667899999999999999999
Q ss_pred -----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 500 -----RDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 500 -----~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 152 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 152 LWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred ccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 5999999999999999999999999999875 4899999999999986 599999999999999999988864
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=358.96 Aligned_cols=201 Identities=31% Similarity=0.539 Sum_probs=169.2
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHH---HHhc
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLK---WLRS 421 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r~ 421 (1255)
|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 24699999999999999999999999999999999999999999999999999876543 4678
Q ss_pred ccEEeccCCccCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHH
Q 000846 422 QMGLVNQEPVLFA-TSITENILFGKD--GAS----MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAI 494 (1255)
Q Consensus 422 ~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~l 494 (1255)
.++|++|+|.+|. .|++||+.++.. ... .+++.++++..+ +.........+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVG-----------LEHKADAFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHHHH
Confidence 8999999999986 599999987521 111 122333333333 3333344456899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCE
Q 000846 495 ARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIRT-ANLIMVLKAGK 558 (1255)
Q Consensus 495 ARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~ 558 (1255)
||||+.+|++|||||||++||+.++..+.+.|+++. +|+|+|++||+++.+.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999874 48999999999999875 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=367.59 Aligned_cols=222 Identities=24% Similarity=0.396 Sum_probs=183.2
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCeecCCC-----C
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL---KGSVFMDEQDIRNY-----N 1079 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~idG~di~~i-----~ 1079 (1255)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999963 46999999999999999999999999999999999999986 49999999998653 3
Q ss_pred HHHHhcceEEEccCCCCCc-ccHHHHHhcCCCCC--------------CHHHHHHHHHHhcHHHHHHccccccccccCCC
Q 000846 1080 LKQLRSHIALVSQEPTLFA-GTIRENIAYGKADA--------------RESEIKKAAVLANAHEFISGMKDGYDTYCGER 1144 (1255)
Q Consensus 1080 ~~~lR~~i~~V~Qdp~LF~-gTIreNl~~g~~~~--------------~~~ei~~al~~a~l~~~i~~lp~gldt~vge~ 1144 (1255)
...+|++++|+||++.+|. .|++||+.++.... ..+++.++++..++.+ .....
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVH-----------FAHQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHH-----------HHhCC
Confidence 4567889999999999887 59999998753210 1123333444444332 23345
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCC
Q 000846 1145 GVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQ-KSDTIAVIKNG 1221 (1255)
Q Consensus 1145 G~~LSgGQkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~Vl~~G 1221 (1255)
..+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 56799999999999999999999999999999999999999999999875 3799999999999864 59999999999
Q ss_pred EEEEecCHHHHHhhhcCchhHHHHhh
Q 000846 1222 RVVEQGSHNELVALSRGGAYYSLIKP 1247 (1255)
Q Consensus 1222 ~ive~G~~~eLl~~~~~g~y~~l~~~ 1247 (1255)
++++.|+++++ . .....+++..
T Consensus 230 ~i~~~g~~~~~-~---~~~~~~~~~~ 251 (262)
T PRK09984 230 HVFYDGSSQQF-D---NERFDHLYRS 251 (262)
T ss_pred EEEEeCCHHHh-c---cHHHHHHHhh
Confidence 99999999997 2 2344555543
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=364.68 Aligned_cols=217 Identities=29% Similarity=0.515 Sum_probs=183.3
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecC------CCCHH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIR------RLHLK 417 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~------~~~~~ 417 (1255)
.++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .....
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999963 35999999999999999999999999999999999999999999999999873 12345
Q ss_pred HHhcccEEeccCCccCcc-cHHHHhccCCC---CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHH
Q 000846 418 WLRSQMGLVNQEPVLFAT-SITENILFGKD---GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIA 493 (1255)
Q Consensus 418 ~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~ 493 (1255)
.+|++++|++|++.+|.+ |++||+.++.. ....++.. ..+.+.++.+ |++........+||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHH
Confidence 678899999999999975 99999974211 11111111 1234455555 6666677777899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 494 IARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 494 lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
||||++.+|+++||||||++||+++...+.+.|+++. +|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 9999999999999999999999999999999999875 4899999999999986 499999999999999999887643
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=358.65 Aligned_cols=205 Identities=38% Similarity=0.639 Sum_probs=172.4
Q ss_pred EEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccEE
Q 000846 346 EFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGL 425 (1255)
Q Consensus 346 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 425 (1255)
+++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999742 1469999999999999999999999999999999999999999999999999987777778889999
Q ss_pred eccCCc--cCcccHHHHhccCCCC--CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccC
Q 000846 426 VNQEPV--LFATSITENILFGKDG--ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501 (1255)
Q Consensus 426 v~Q~~~--l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~ 501 (1255)
++|++. ++..|++||+.++... ....+..+ .+.+.++.+ |++........+||||||||++|||||+++
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999984 5678999999875321 11111111 123344444 555556667789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCE
Q 000846 502 PKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIRT-ANLIMVLKAGK 558 (1255)
Q Consensus 502 ~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~ 558 (1255)
|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999998875 48999999999999876 99999999984
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=371.53 Aligned_cols=213 Identities=33% Similarity=0.562 Sum_probs=182.8
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.++++|++++|+. +..+|+||||+|++|+++|++||||||||||+++|+|++.|++|+|.++|.+...- ....+++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999973 24699999999999999999999999999999999999999999999999998765 66788899
Q ss_pred EEeccCCccCcc-cHHHHhccCCC-----C-CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHH
Q 000846 424 GLVNQEPVLFAT-SITENILFGKD-----G-ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIAR 496 (1255)
Q Consensus 424 ~~v~Q~~~l~~~-ti~~ni~~~~~-----~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lAR 496 (1255)
||+||+|.+++. |++||+.|... . ...+.+.+.++.. |++........+||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELF-----------GLEDKANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHc-----------CCchhhCcchhhcCHHHHHHHHHHH
Confidence 999999998876 99999987321 1 1122343344333 3333224556799999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhc
Q 000846 497 ALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK-G-RTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 497 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~-~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
||+.+|++|||||||++|||.++..+.+.|+++.+ | +||+++||.++.+.. ||+|++|++|+++.+|+++++..
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999865 5 799999999999976 99999999999999999998765
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=367.00 Aligned_cols=216 Identities=31% Similarity=0.484 Sum_probs=179.7
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecC--CCCHHHHhcc
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIR--RLHLKWLRSQ 422 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 422 (1255)
|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999963 35999999999999999999999999999999999999999999999999985 2344567889
Q ss_pred cEEeccCCc--cCcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHh
Q 000846 423 MGLVNQEPV--LFATSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARAL 498 (1255)
Q Consensus 423 i~~v~Q~~~--l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal 498 (1255)
++||+|+|. ++..|+.+|+.++.. ....++..+ .+.+.++.+ |++........+||||||||++|||||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITR-----RVDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 999999985 566799999987421 112222211 112233333 343334556679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 499 IRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 499 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
+.+|++|||||||++||+.++..+.+.|+++. +|+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999998874 4899999999999985 599999999999999999998865
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=365.95 Aligned_cols=217 Identities=27% Similarity=0.411 Sum_probs=184.4
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcc
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ 422 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 422 (1255)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 36999999999973 359999999999999999999999999999999999999999999999999988887778889
Q ss_pred cEEeccCCccCc-ccHHHHhccCCCCC-------CHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHH
Q 000846 423 MGLVNQEPVLFA-TSITENILFGKDGA-------SMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAI 494 (1255)
Q Consensus 423 i~~v~Q~~~l~~-~ti~~ni~~~~~~~-------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~l 494 (1255)
++|++|++.+|. .|++||+.++.... .... ...+.+.++.+ |++......+.+||||||||++|
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~l 154 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKED------EEAVTKAMQAT--GITHLADQSVDTLSGGQRQRAWI 154 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHH------HHHHHHHHHHc--CCHHHhcCCcccCChHHHHHHHH
Confidence 999999998875 59999998753110 1110 11122333333 44444566678999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 495 ARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 495 ARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
|||++.+|++|||||||++||+.+.+.+.+.|+++.+ |+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 155 aral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 9999999999999999999999999999999998743 789999999999875 599999999999999999988764
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=367.88 Aligned_cols=220 Identities=29% Similarity=0.506 Sum_probs=182.6
Q ss_pred cceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeecCC--C
Q 000846 342 RGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKIRR--L 414 (1255)
Q Consensus 342 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~ 414 (1255)
+..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 37 ~~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 37 ETVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 346999999999963 359999999999999999999999999999999999997 689999999999864 3
Q ss_pred CHHHHhcccEEeccCCccCcccHHHHhccCCCC--CC---HHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHH
Q 000846 415 HLKWLRSQMGLVNQEPVLFATSITENILFGKDG--AS---MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQK 489 (1255)
Q Consensus 415 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqr 489 (1255)
+...++++++|++|++.+|..|++||+.++... .. .+++.++++..++.+ .+....+..+.+||||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LSgGe~ 186 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWD-------EVKDQLDSSGLDLSGGQQ 186 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCc-------hhHHHHhCCcccCCHHHH
Confidence 455678899999999999988999999865311 11 122233333322211 112345677789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEE-EEeCCEEEEecChhH
Q 000846 490 QRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRT-ANLIM-VLKAGKVVESGSHNE 567 (1255)
Q Consensus 490 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~-vl~~G~i~~~g~~~~ 567 (1255)
||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+++ +|++|++++.|++++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~ 266 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDK 266 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998767899999999999865 99975 579999999999999
Q ss_pred Hhcc
Q 000846 568 LMNR 571 (1255)
Q Consensus 568 l~~~ 571 (1255)
+..+
T Consensus 267 ~~~~ 270 (285)
T PRK14254 267 IFEN 270 (285)
T ss_pred HHhC
Confidence 8754
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=375.69 Aligned_cols=200 Identities=24% Similarity=0.421 Sum_probs=171.3
Q ss_pred CccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceEEEccCCCCCcc-cHH
Q 000846 1024 QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIR 1102 (1255)
Q Consensus 1024 ~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIr 1102 (1255)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ....+|++|+|+||++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999976 445678999999999999875 999
Q ss_pred HHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCC
Q 000846 1103 ENIAYGKA--DARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATS 1176 (1255)
Q Consensus 1103 eNl~~g~~--~~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~ILlLDEaTS 1176 (1255)
||+.+... ..+. +++.++++..++. ........+||||||||++|||||+++|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELG-----------EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99976421 1121 2333444444332 22334456799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1177 ALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1177 aLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
+||+.+.+.+++.|++.. +|+|+|++||+++.+.+ ||+|++|++|++++.|+++++.+.
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999875 57999999999999875 999999999999999999999764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=364.32 Aligned_cols=218 Identities=28% Similarity=0.475 Sum_probs=184.0
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeecCCC--CH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP-----VEGEVLLDGYKIRRL--HL 416 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 416 (1255)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 5899999999963 4599999999999999999999999999999999999763 489999999998765 44
Q ss_pred HHHhcccEEeccCCccCcccHHHHhccCCCC--C-CHH----HHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHH
Q 000846 417 KWLRSQMGLVNQEPVLFATSITENILFGKDG--A-SMD----DVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQK 489 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqr 489 (1255)
...++.++|++|++.+|+.|++||+.++... . ... .+.++++..+ +.+++.+..+..+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAA-------LWDEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhc-------CchhhHHHhhcChhhCCHHHH
Confidence 5678899999999999989999999876321 1 111 1222222222 222334456778889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 000846 490 QRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 490 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l 568 (1255)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 999999999999999999999999999999999999998877799999999999986 5999999999999999999998
Q ss_pred hcc
Q 000846 569 MNR 571 (1255)
Q Consensus 569 ~~~ 571 (1255)
..+
T Consensus 236 ~~~ 238 (253)
T PRK14261 236 FEN 238 (253)
T ss_pred HhC
Confidence 754
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=360.11 Aligned_cols=211 Identities=27% Similarity=0.425 Sum_probs=181.2
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhccc
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5999999999963 4599999999999999999999999999999999999999999999999999888877788899
Q ss_pred EEeccCCccCcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCccc-chhcCCCCCCChHHHHHHHHHHHhcc
Q 000846 424 GLVNQEPVLFATSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYE-TQVGQLGFQMSGGQKQRIAIARALIR 500 (1255)
Q Consensus 424 ~~v~Q~~~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqrqri~lARal~~ 500 (1255)
+|++|++.+|+.|++||+.++.. ....++ ..+.+.++.+ |+. +.....+.+||||||||++|||||++
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~-------~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP-------AIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHH-------HHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999998899999986421 111110 1123445555 553 45677888999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEe-CCEEEEecChh
Q 000846 501 DPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIRTANLIMVLK-AGKVVESGSHN 566 (1255)
Q Consensus 501 ~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~-~G~i~~~g~~~ 566 (1255)
+|+++||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+..||++++|+ ++..+++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999999874 3889999999999998899999995 66677888775
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=357.82 Aligned_cols=206 Identities=32% Similarity=0.532 Sum_probs=171.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCH---HHHhc
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHL---KWLRS 421 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r~ 421 (1255)
|+++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999642 359999999999999999999999999999999999999999999999999987654 34678
Q ss_pred ccEEeccCCccCcc-cHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHh
Q 000846 422 QMGLVNQEPVLFAT-SITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARAL 498 (1255)
Q Consensus 422 ~i~~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal 498 (1255)
.++|++|+|.+|.. |++||+.++.. ....++..+ .+.+.++.+ |++........+||||||||++|||||
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK-----RVPAALELV--GLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 89999999999985 99999987532 112221111 112333333 444444555679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 000846 499 IRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIRT-ANLIMVLKAGKV 559 (1255)
Q Consensus 499 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i 559 (1255)
+.+|+++||||||++||+++++.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999874 58999999999999875 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=366.91 Aligned_cols=220 Identities=29% Similarity=0.477 Sum_probs=185.7
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeecCCCC-HH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP-----VEGEVLLDGYKIRRLH-LK 417 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~-~~ 417 (1255)
.++++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999973 4699999999999999999999999999999999999986 7999999999987653 45
Q ss_pred HHhcccEEeccCCccCcccHHHHhccCCC---CCCHHHHHHHHHHhchHHHHhcC--CCcccchhcCCCCCCChHHHHHH
Q 000846 418 WLRSQMGLVNQEPVLFATSITENILFGKD---GASMDDVISAAKAANAHDFITKL--PDGYETQVGQLGFQMSGGQKQRI 492 (1255)
Q Consensus 418 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqrqri 492 (1255)
.++++++|++|+|.+|+.|++||+.++.. ..+.++..+.+ .+.+..+ +..+.+.....+.+||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 67889999999999999999999987532 12333322211 1222322 22223456677889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhcc
Q 000846 493 AIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 493 ~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
+|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999998866789999999999986 5999999999999999999999764
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=342.86 Aligned_cols=220 Identities=30% Similarity=0.478 Sum_probs=191.2
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHH-Hhccc
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW-LRSQM 423 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 423 (1255)
++++|++++|++ ..+++||||++++||+++|+|||||||||++|+|+|+|+|++|+|.++|++|..+++.. .|..|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 678999999974 46999999999999999999999999999999999999999999999999999998765 46689
Q ss_pred EEeccCCccCcc-cHHHHhccCCCCC-----------CHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHH
Q 000846 424 GLVNQEPVLFAT-SITENILFGKDGA-----------SMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQR 491 (1255)
Q Consensus 424 ~~v~Q~~~l~~~-ti~~ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqr 491 (1255)
+--+|.+.+|++ ||.||+..+.... ...+..++ ...+.+.++.+ |+....++...+||+|||.|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~--~e~A~~~Le~v--gL~~~a~~~A~~LsyG~qR~ 157 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREA--RERARELLEFV--GLGELADRPAGNLSYGQQRR 157 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHH--HHHHHHHHHHc--CCchhhcchhhcCChhHhHH
Confidence 999999999987 9999998763211 00111111 12234555555 88888888899999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 000846 492 IAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 492 i~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l 568 (1255)
+.|||||..+|++|+||||.++|.+.....+.+.|+++++ |.|+++|.||++.+.. ||||+||+.|+++.+|+|+|+
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHH
Confidence 9999999999999999999999999999999999999875 5999999999999864 999999999999999999999
Q ss_pred hcc
Q 000846 569 MNR 571 (1255)
Q Consensus 569 ~~~ 571 (1255)
.++
T Consensus 238 ~~d 240 (250)
T COG0411 238 RNN 240 (250)
T ss_pred hcC
Confidence 875
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=362.66 Aligned_cols=218 Identities=29% Similarity=0.512 Sum_probs=183.9
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeecC-CCCHH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP-----VEGEVLLDGYKIR-RLHLK 417 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~-~~~~~ 417 (1255)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999973 4599999999999999999999999999999999999986 5999999999985 34566
Q ss_pred HHhcccEEeccCCccCcccHHHHhccCCCC--CC-H----HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHH
Q 000846 418 WLRSQMGLVNQEPVLFATSITENILFGKDG--AS-M----DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQ 490 (1255)
Q Consensus 418 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~-~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrq 490 (1255)
.+|+.++|++|++.+|..|++||+.++... .. . +++.++++..++. +++.+.....+.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALW-------DEVKDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCc-------hhhhHHhhcCcccCCHHHHH
Confidence 778899999999999989999999875321 11 1 1122223333222 12234456677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000846 491 RIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELM 569 (1255)
Q Consensus 491 ri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 569 (1255)
|++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777999999999999865 9999999999999999998886
Q ss_pred cc
Q 000846 570 NR 571 (1255)
Q Consensus 570 ~~ 571 (1255)
.+
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 53
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=364.89 Aligned_cols=232 Identities=22% Similarity=0.388 Sum_probs=185.2
Q ss_pred eEEEEeEEEEcCCC------CCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHH
Q 000846 344 EIEFRDVYFCYPSR------PDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLK 417 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~ 417 (1255)
.|+++||+++|+.. .+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 124699999999999999999999999999999999999999999999999998765555
Q ss_pred HHhcccEEeccCCc--cCcc-cHHHHhccCCC---CCCHHHHHHHHHHhchHHHHhcCCCccc-chhcCCCCCCChHHHH
Q 000846 418 WLRSQMGLVNQEPV--LFAT-SITENILFGKD---GASMDDVISAAKAANAHDFITKLPDGYE-TQVGQLGFQMSGGQKQ 490 (1255)
Q Consensus 418 ~~r~~i~~v~Q~~~--l~~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqrq 490 (1255)
..++.++|++|+|. ++.. |+.+|+.++.. .....+..+ .+.+.++.+ |++ ........+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G~~q 156 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREK-----QIIETLRQV--GLLPDHASYYPHMLAPGQKQ 156 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc--CCChHHHhcCchhcCHHHHH
Confidence 66678999999985 4544 89999875321 111111111 112333333 332 2233455789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 000846 491 RIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNE 567 (1255)
Q Consensus 491 ri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~ 567 (1255)
|++||||++.+|+||||||||++||+++.+.+.+.|+++. .|+|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 236 (267)
T PRK15112 157 RLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTAD 236 (267)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999999999999999999874 38999999999999875 99999999999999999999
Q ss_pred HhccCCCChhHHHHH
Q 000846 568 LMNRGEGGEYYQMVE 582 (1255)
Q Consensus 568 l~~~~~~~~~~~~~~ 582 (1255)
+...+....+.+++.
T Consensus 237 ~~~~~~~~~~~~~~~ 251 (267)
T PRK15112 237 VLASPLHELTKRLIA 251 (267)
T ss_pred HhcCCCCHHHHHHHH
Confidence 987543444555554
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=364.92 Aligned_cols=219 Identities=32% Similarity=0.497 Sum_probs=183.8
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeecCC--CC
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP-----VEGEVLLDGYKIRR--LH 415 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 415 (1255)
+.|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36999999999963 3599999999999999999999999999999999999985 48999999998854 34
Q ss_pred HHHHhcccEEeccCCccCcccHHHHhccCCCC---CCH----HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHH
Q 000846 416 LKWLRSQMGLVNQEPVLFATSITENILFGKDG---ASM----DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQ 488 (1255)
Q Consensus 416 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 488 (1255)
...++++++|++|++.+|+.|++||+.++... ... +.+.++++..++.+.+ .......+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV-------KDKLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHH
Confidence 56678899999999999999999999875311 111 1233344444433222 223456678999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEe-----CCEEEEe
Q 000846 489 KQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLK-----AGKVVES 562 (1255)
Q Consensus 489 rqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~-----~G~i~~~ 562 (1255)
|||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 9999999999999999999999999999999999999998877899999999999986 599999998 5999999
Q ss_pred cChhHHhcc
Q 000846 563 GSHNELMNR 571 (1255)
Q Consensus 563 g~~~~l~~~ 571 (1255)
|+++++.+.
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 999998764
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=355.01 Aligned_cols=210 Identities=29% Similarity=0.473 Sum_probs=184.4
Q ss_pred EEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCH----HHHhc
Q 000846 346 EFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHL----KWLRS 421 (1255)
Q Consensus 346 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~r~ 421 (1255)
.+.|++|+|+.+ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999743 469999999999999999999999999999999999999999999999998866542 24567
Q ss_pred ccEEeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccC
Q 000846 422 QMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501 (1255)
Q Consensus 422 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~ 501 (1255)
.++|++|+|.+|+.|++||+.++.+ ...++..++++..++.+.+..+|.|+++..+....+||||||||++||||++.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999998899999998643 234455667777788888888999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHH--HHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCE
Q 000846 502 PKILLLDEATSALDAQSERIVQE--AIDKVS-KGRTTLIIAHRLSTIRTANLIMVLKAGK 558 (1255)
Q Consensus 502 ~~illlDEpts~lD~~~~~~i~~--~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~ 558 (1255)
|++|||||||++||+.+...+.+ .++.+. +|.|+|++||+++.+..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988887 455543 3799999999999988899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=368.64 Aligned_cols=214 Identities=30% Similarity=0.542 Sum_probs=186.4
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcce
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1087 (1255)
.|+++||+.+|.. +..+|+||||+|++||.+|++||||||||||+++|+|+..|++|+|.++|.|...- ...+|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999962 24699999999999999999999999999999999999999999999999998764 67889999
Q ss_pred EEEccCCCCCcc-cHHHHHhcCC-----C-CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHH
Q 000846 1088 ALVSQEPTLFAG-TIRENIAYGK-----A-DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALAR 1160 (1255)
Q Consensus 1088 ~~V~Qdp~LF~g-TIreNl~~g~-----~-~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalAR 1160 (1255)
|||||+|.++.. |++|||.|.. + ...++.+.+.++..++.+. -......||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDK-----------ANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchh-----------hCcchhhcCHHHHHHHHHHH
Confidence 999999998865 9999997632 2 1224566666666665441 13345679999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhh
Q 000846 1161 AILKNPSILLLDEATSALDSVSESLVQEALEKMMM-G-RTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1161 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~-~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~ 1235 (1255)
||+.+|+||||||||++|||.+...+.+.|++..+ + +||+++||.++.+.. ||+|++|++|+++..|+++++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999875 4 799999999999987 999999999999999999998653
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=358.21 Aligned_cols=202 Identities=28% Similarity=0.493 Sum_probs=166.2
Q ss_pred EEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccEE
Q 000846 346 EFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGL 425 (1255)
Q Consensus 346 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 425 (1255)
+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .++++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999963 35999999999999999999999999999999999999999999999998764 46778999
Q ss_pred eccCCcc---CcccHHHHhccCCCCC------CHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHH
Q 000846 426 VNQEPVL---FATSITENILFGKDGA------SMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIAR 496 (1255)
Q Consensus 426 v~Q~~~l---~~~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lAR 496 (1255)
++|++.+ ++.|++||+.++.... ..++. ...+.+.++.+ |++........+||||||||++|||
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 145 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKAD-----KAKVDEALERV--GLSELADRQIGELSGGQQQRVLLAR 145 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHH-----HHHHHHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHH
Confidence 9999976 5679999998764311 00110 11122333433 4444455566799999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 000846 497 ALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESG 563 (1255)
Q Consensus 497 al~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g 563 (1255)
||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999875 58999999999999864 9999999986 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=342.49 Aligned_cols=172 Identities=41% Similarity=0.689 Sum_probs=161.4
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
|+++|++++|++. ..++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999742 246999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EeccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 000846 425 LVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKI 504 (1255)
Q Consensus 425 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~i 504 (1255)
|++|+|.+|+.|++||+ ||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEE
Q 000846 505 LLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIRTANLIMVLKAGKV 559 (1255)
Q Consensus 505 lllDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i 559 (1255)
|||||||++||+.++..+.+.|+++. +|+|+|++||+++.+..||++++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998875 48999999999999888999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=365.14 Aligned_cols=221 Identities=27% Similarity=0.415 Sum_probs=184.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999963 36999999999999999999999999999999999999999999999999998888878888999
Q ss_pred EeccCCcc-CcccHHHHhccCCCCCCH-HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 000846 425 LVNQEPVL-FATSITENILFGKDGASM-DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDP 502 (1255)
Q Consensus 425 ~v~Q~~~l-~~~ti~~ni~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~ 502 (1255)
|++|++.+ +..|++||+.++...... ...........+.+.+..+ |+.......+..||||||||++||||++.+|
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999865 456999999876321100 0000000111233444444 4555556677899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 503 KILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 503 ~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
+++||||||++||+.+...+.+.|+++. +|.|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999875 4789999999999995 599999999999999999988754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=363.22 Aligned_cols=218 Identities=30% Similarity=0.499 Sum_probs=182.6
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeecCCC--CH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP-----VEGEVLLDGYKIRRL--HL 416 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 416 (1255)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 4699999999999999999999999999999999999984 899999999988653 33
Q ss_pred HHHhcccEEeccCCccCcccHHHHhccCCCC--C-CHH----HHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHH
Q 000846 417 KWLRSQMGLVNQEPVLFATSITENILFGKDG--A-SMD----DVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQK 489 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqr 489 (1255)
..+++.++|++|+|.+|..|++||+.++... . ..+ ++.++++..++.+. +++..+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDE-------VKSELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCch-------hHHHHhCChhhcCHHHH
Confidence 4667899999999999999999999875311 1 111 12223333332211 12345677789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 000846 490 QRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 490 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l 568 (1255)
||++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999998877899999999999875 5999999999999999999998
Q ss_pred hcc
Q 000846 569 MNR 571 (1255)
Q Consensus 569 ~~~ 571 (1255)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14262 233 VER 235 (250)
T ss_pred HhC
Confidence 753
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=354.94 Aligned_cols=208 Identities=30% Similarity=0.487 Sum_probs=173.1
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHH---HHhc
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLK---WLRS 421 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r~ 421 (1255)
|+++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 24699999999999999999999999999999999999999999999999999876543 3678
Q ss_pred ccEEeccCCccC-cccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHh
Q 000846 422 QMGLVNQEPVLF-ATSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARAL 498 (1255)
Q Consensus 422 ~i~~v~Q~~~l~-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal 498 (1255)
.++|++|+|.++ ..|++||+.++.. ....++..+. +.+.++.+ |++........+||||||||++||||+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR-----VSAALDKV--GLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHH-----HHHHHHHc--CChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 999999999875 5699999987531 1222222211 12233333 444445556679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEE
Q 000846 499 IRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVE 561 (1255)
Q Consensus 499 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 561 (1255)
+.+|++|||||||++||+.+.+.+.+.|+++. ++.|+|++||+++.+.. ||+|++|++|+++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999874 47999999999999865 99999999999864
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=356.82 Aligned_cols=205 Identities=24% Similarity=0.487 Sum_probs=173.9
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
++++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999963 359999999999999999999999999999999999999999999999988753 4577899
Q ss_pred EeccCCccCcc-cHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccC
Q 000846 425 LVNQEPVLFAT-SITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501 (1255)
Q Consensus 425 ~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~ 501 (1255)
|++|++.++.+ |++||+.+... .....+. ...+.++++.+ |++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHH-----HHHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 99999999875 99999986421 1111111 11234455555 666666777789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 000846 502 PKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESG 563 (1255)
Q Consensus 502 ~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g 563 (1255)
|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998874 4789999999999885 49999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=378.20 Aligned_cols=211 Identities=27% Similarity=0.448 Sum_probs=179.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCC----CHHHHh
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL----HLKWLR 420 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~~~r 420 (1255)
|++ |++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+. +....+
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 89999963 2 23 89999999999999999999999999999999999999999999998653 234457
Q ss_pred cccEEeccCCccCcc-cHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhc
Q 000846 421 SQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALI 499 (1255)
Q Consensus 421 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~ 499 (1255)
++++||+|++.+|+. |++||+.++......+++.+.+ +.+ |++........+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l---------~~~--gl~~~~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIV---------ALL--GIEPLLDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHH---------HHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 899999999999975 9999999875432233333333 333 4554555666799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhccC
Q 000846 500 RDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNRG 572 (1255)
Q Consensus 500 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~ 572 (1255)
.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|+|||+++.+. .||+|++|++|++++.|+++++..++
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999988753 789999999999875 59999999999999999999998764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=357.46 Aligned_cols=212 Identities=29% Similarity=0.442 Sum_probs=175.0
Q ss_pred eEEEEeEEEEcCCCCC-CccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHH---H
Q 000846 344 EIEFRDVYFCYPSRPD-TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW---L 419 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 419 (1255)
.|+++|++++|++... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999974221 25999999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hcccEEeccCCccCcc-cHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHH
Q 000846 420 -RSQMGLVNQEPVLFAT-SITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIA 495 (1255)
Q Consensus 420 -r~~i~~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lA 495 (1255)
++.++|++|+|.+|.. |++||+.++.. .....+. ...+.+.++.+ |++........+||||||||++||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS-----RNGAKALLEQL--GLGKRLDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHH
Confidence 3679999999999875 99999986421 1111111 11123334444 444444555679999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 000846 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-K-GRTTLIIAHRLSTIRTANLIMVLKAGKVVES 562 (1255)
Q Consensus 496 Ral~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 562 (1255)
|||+.+|++|||||||++||+.+.+.+.+.|+++. + |+|+|++||+++.+..||++++|++|++++.
T Consensus 159 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999998874 3 7899999999999878999999999999764
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=364.36 Aligned_cols=221 Identities=25% Similarity=0.377 Sum_probs=185.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCC--------ccEEEECCeecCCCCH
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV--------EGEVLLDGYKIRRLHL 416 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~--------~G~i~~~g~~~~~~~~ 416 (1255)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999963 35999999999999999999999999999999999999998 9999999999988777
Q ss_pred HHHhcccEEeccCCc-cCcccHHHHhccCCCCC-CHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHH
Q 000846 417 KWLRSQMGLVNQEPV-LFATSITENILFGKDGA-SMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAI 494 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~-l~~~ti~~ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~l 494 (1255)
..+++.++|++|++. +|..|++||+.++.... .............+.+.++.+ |+++..+....+||||||||++|
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA--GATALVGRDVTTLSGGELARVQF 156 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHH
Confidence 778888999999986 56789999998753211 000000000111223445555 67777788889999999999999
Q ss_pred HHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEe
Q 000846 495 ARALI---------RDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVES 562 (1255)
Q Consensus 495 ARal~---------~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~ 562 (1255)
||||+ .+|++|||||||++||+.+.+.+.+.|+++.+ |+|+|+|||+++.+. .||++++|++|++++.
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence 99999 59999999999999999999999999998743 799999999999985 5999999999999999
Q ss_pred cChhHHhc
Q 000846 563 GSHNELMN 570 (1255)
Q Consensus 563 g~~~~l~~ 570 (1255)
|+++++..
T Consensus 237 g~~~~~~~ 244 (272)
T PRK13547 237 GAPADVLT 244 (272)
T ss_pred cCHHHHcC
Confidence 99988864
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=363.32 Aligned_cols=221 Identities=32% Similarity=0.508 Sum_probs=186.1
Q ss_pred ccceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeecCC--
Q 000846 341 VRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP-----VEGEVLLDGYKIRR-- 413 (1255)
Q Consensus 341 ~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~-- 413 (1255)
..+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 13 ~~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 13 TQQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 3467999999999973 3599999999999999999999999999999999999875 79999999987742
Q ss_pred --CCHHHHhcccEEeccCCccCcccHHHHhccCCC--CCC-----HHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCC
Q 000846 414 --LHLKWLRSQMGLVNQEPVLFATSITENILFGKD--GAS-----MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQM 484 (1255)
Q Consensus 414 --~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 484 (1255)
.....+++.++|++|++.+|.+|++||+.++.. ... .+++.++++.+++. +++.+..+....+|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~L 162 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALW-------DEVKDRLGDLAFNL 162 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCc-------hhhhHHHhCCcccC
Confidence 334567889999999999999999999987531 111 12233333333322 13344566778899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 000846 485 SGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESG 563 (1255)
Q Consensus 485 SgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g 563 (1255)
|||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||++++|++|++++.|
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999998877899999999999985 59999999999999999
Q ss_pred ChhHHhcc
Q 000846 564 SHNELMNR 571 (1255)
Q Consensus 564 ~~~~l~~~ 571 (1255)
+++++...
T Consensus 243 ~~~~~~~~ 250 (265)
T PRK14252 243 ATDTIFIK 250 (265)
T ss_pred CHHHHHhC
Confidence 99998754
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=403.61 Aligned_cols=100 Identities=31% Similarity=0.520 Sum_probs=92.2
Q ss_pred cccc-ccCCCCCCCChHHHHHHHHHHHHccCC---CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh
Q 000846 1136 GYDT-YCGERGVQLSGGQKQRIALARAILKNP---SILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQ 1210 (1255)
Q Consensus 1136 gldt-~vge~G~~LSgGQkQrlalARALlr~p---~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~ 1210 (1255)
|++. .++.....||||||||++|||||+++| +++||||||++||+.+.+.+.+.|+++. +|.|+|+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5544 367778899999999999999999999 9999999999999999999999999875 5899999999999999
Q ss_pred hcCEEEEE------eCCEEEEecCHHHHHhh
Q 000846 1211 KSDTIAVI------KNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1211 ~~D~I~Vl------~~G~ive~G~~~eLl~~ 1235 (1255)
.||+|++| ++|+|++.|+++++.+.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~ 928 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKV 928 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhC
Confidence 99999999 69999999999999875
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=363.22 Aligned_cols=202 Identities=27% Similarity=0.477 Sum_probs=170.6
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999963 4699999999999999999999999999999999999999999999999998642 34699
Q ss_pred EEccCCCCCc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHH
Q 000846 1089 LVSQEPTLFA-GTIRENIAYGKA--DARE----SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161 (1255)
Q Consensus 1089 ~V~Qdp~LF~-gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARA 1161 (1255)
|+||++.+|. .|++||+.++.. .... +++.+.++..+ ++........+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVG-----------LEGAEKRYIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcC-----------ChhHhhCChhhCCHHHHHHHHHHHH
Confidence 9999999887 699999976421 1122 22333333333 3333344567899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEe--CCEEEEecCH
Q 000846 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIK--NGRVVEQGSH 1229 (1255)
Q Consensus 1162 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~--~G~ive~G~~ 1229 (1255)
|+++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|++++.++.
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999999873 48999999999999865 99999998 5999998764
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=366.69 Aligned_cols=217 Identities=33% Similarity=0.570 Sum_probs=181.2
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCC--CCHHHHhcc
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRR--LHLKWLRSQ 422 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 422 (1255)
|+++|++++|+. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...++++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999963 2359999999999999999999999999999999999999999999999999852 234567889
Q ss_pred cEEeccCC--ccCcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHh
Q 000846 423 MGLVNQEP--VLFATSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARAL 498 (1255)
Q Consensus 423 i~~v~Q~~--~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal 498 (1255)
|+|++|+| .+|..|++||+.++.. ..+.++..+ .+.+.++.+ |++........+||||||||++||||+
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK-----RVKEALKAV--GMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999998 4778899999987532 112222111 112333333 444444555679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 499 IRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 499 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
+.+|+++||||||++||+.+...+.+.|+++. +|+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999875 4899999999999986 599999999999999999999865
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=356.58 Aligned_cols=205 Identities=33% Similarity=0.557 Sum_probs=173.5
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCC--CCHHHHhcc
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRR--LHLKWLRSQ 422 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 422 (1255)
|+++|++++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999974 359999999999999999999999999999999999999999999999998853 344567889
Q ss_pred cEEeccCCccCc-ccHHHHhccCCC---CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHh
Q 000846 423 MGLVNQEPVLFA-TSITENILFGKD---GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARAL 498 (1255)
Q Consensus 423 i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal 498 (1255)
++|++|++.+|. .|++||+.++.. ....++.. ..+.+.++.+ |++........+||||||||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAE-----ERALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999987 599999987531 11222211 1123445555 666666777789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEE
Q 000846 499 IRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKV 559 (1255)
Q Consensus 499 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i 559 (1255)
+++|++|||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+. .||+|++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999875 4899999999999986 4999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=378.86 Aligned_cols=232 Identities=29% Similarity=0.487 Sum_probs=185.2
Q ss_pred ceEEEEeEEEEcCCC--------CCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCee--cC
Q 000846 343 GEIEFRDVYFCYPSR--------PDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYK--IR 412 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~--------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~--~~ 412 (1255)
.-++++|++++|..+ ....+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.+ ++
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 357899999999742 13568999999999999999999999999999999999999999999999987 23
Q ss_pred CCCHHHHhcccEEeccCCc--cCc-ccHHHHhccCCCCCCHHHHHHHHHHhchHHHHhcCCCcccc-hhcCCCCCCChHH
Q 000846 413 RLHLKWLRSQMGLVNQEPV--LFA-TSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYET-QVGQLGFQMSGGQ 488 (1255)
Q Consensus 413 ~~~~~~~r~~i~~v~Q~~~--l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGq 488 (1255)
.-+....|+++-+|+|||+ |-+ .||+++|.-......... .+.+.+.+.+.++.. |+.. .......+|||||
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~--~~~~~~rv~~ll~~V--gL~~~~l~ryP~elSGGQ 434 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGS--GAERRARVAELLELV--GLPPEFLDRYPHELSGGQ 434 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccc--hHHHHHHHHHHHHHc--CCCHHHHhcCchhcCcch
Confidence 2234567889999999996 444 499999974321110000 111111222333322 3333 4567778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecCh
Q 000846 489 KQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSH 565 (1255)
Q Consensus 489 rqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~ 565 (1255)
||||||||||..+|+++++|||||+||+.+...+.+.|+++.+ |.|.|+||||++.++. ||||+||++|+|||.|+.
T Consensus 435 rQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~ 514 (539)
T COG1123 435 RQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPT 514 (539)
T ss_pred hHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999999999864 8999999999999976 999999999999999999
Q ss_pred hHHhccCCCChhHH
Q 000846 566 NELMNRGEGGEYYQ 579 (1255)
Q Consensus 566 ~~l~~~~~~~~~~~ 579 (1255)
+++.+.+. ..|.+
T Consensus 515 ~~v~~~p~-h~Ytr 527 (539)
T COG1123 515 EKVFENPQ-HPYTR 527 (539)
T ss_pred HHHhcCCC-ChHHH
Confidence 99988743 44443
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=363.31 Aligned_cols=218 Identities=30% Similarity=0.494 Sum_probs=181.3
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeecCC--CCH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP-----VEGEVLLDGYKIRR--LHL 416 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 416 (1255)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999974 3599999999999999999999999999999999999974 79999999999853 345
Q ss_pred HHHhcccEEeccCCccCcc-cHHHHhccCCCC---CCHH----HHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHH
Q 000846 417 KWLRSQMGLVNQEPVLFAT-SITENILFGKDG---ASMD----DVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQ 488 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 488 (1255)
..+|+.++|++|++.+|.. |++||+.++... ...+ .+.++++..++.+ +..........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWN-------EVKDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHH
Confidence 5678899999999999875 999999865311 1111 1222222222211 11234566778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEe------CCEEEE
Q 000846 489 KQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLK------AGKVVE 561 (1255)
Q Consensus 489 rqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~------~G~i~~ 561 (1255)
|||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|++++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999999998877899999999999985 599999997 899999
Q ss_pred ecChhHHhcc
Q 000846 562 SGSHNELMNR 571 (1255)
Q Consensus 562 ~g~~~~l~~~ 571 (1255)
.|+++++...
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999998754
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=320.19 Aligned_cols=227 Identities=31% Similarity=0.538 Sum_probs=190.1
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCC---------
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL--------- 414 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~--------- 414 (1255)
.++++|++++|+.. .+|++|||+.++|+.+.|+|.|||||||+++||.=+-.|+.|+|.++|..+.-.
T Consensus 6 ~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 58999999999743 499999999999999999999999999999999999999999999999887421
Q ss_pred ----CHHHHhcccEEeccCCccCcc-cHHHHhccCCC---CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCCh
Q 000846 415 ----HLKWLRSQMGLVNQEPVLFAT-SITENILFGKD---GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSG 486 (1255)
Q Consensus 415 ----~~~~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 486 (1255)
..+.+|.+.++|+|+..|++. ||.||+.-+.- ..+..+..+ .+..++.+. |+.......+..|||
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e-----~Ae~~L~kV--Gi~ek~~~YP~~LSG 155 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIE-----RAEKYLAKV--GIAEKADAYPAHLSG 155 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHH-----HHHHHHHHh--CchhhhhcCccccCc
Confidence 134688999999999999976 99999864311 112222221 123445554 666666677789999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 000846 487 GQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGS 564 (1255)
Q Consensus 487 Gqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~ 564 (1255)
||+||+||||||..+|+++++|||||+|||+-...+.+.++++. +|+|.++|||.+.+.+. +.+|+.+++|.|-|+|+
T Consensus 156 GQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~ 235 (256)
T COG4598 156 GQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGP 235 (256)
T ss_pred hHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCC
Confidence 99999999999999999999999999999999999999998885 59999999999999987 89999999999999999
Q ss_pred hhHHhccCCCChhHHH
Q 000846 565 HNELMNRGEGGEYYQM 580 (1255)
Q Consensus 565 ~~~l~~~~~~~~~~~~ 580 (1255)
|+++..++......++
T Consensus 236 P~qvf~nP~S~RlkqF 251 (256)
T COG4598 236 PEQVFGNPQSPRLKQF 251 (256)
T ss_pred hHHHhcCCCCHHHHHH
Confidence 9999987655444433
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=362.82 Aligned_cols=219 Identities=32% Similarity=0.469 Sum_probs=183.7
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CccEEEECCeecCC--CC
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDP-----VEGEVLLDGYKIRR--LH 415 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 415 (1255)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 36999999999973 3599999999999999999999999999999999999863 69999999999864 33
Q ss_pred HHHHhcccEEeccCCccCcccHHHHhccCCCCC-----CHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHH
Q 000846 416 LKWLRSQMGLVNQEPVLFATSITENILFGKDGA-----SMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQ 490 (1255)
Q Consensus 416 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrq 490 (1255)
...+|++|+|++|++.+|+.|+.||+.++.... ..+.+.++++.+++.+. +.......+.+|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEE-------VKDKLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchh-------hHHHhcCCcccCCHHHHH
Confidence 456788999999999999889999998753211 11222333333333222 223345667899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEe---------CCEEE
Q 000846 491 RIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLK---------AGKVV 560 (1255)
Q Consensus 491 ri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~---------~G~i~ 560 (1255)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 99999999999999999999999999999999999999877899999999999985 599999997 89999
Q ss_pred EecChhHHhcc
Q 000846 561 ESGSHNELMNR 571 (1255)
Q Consensus 561 ~~g~~~~l~~~ 571 (1255)
+.|+++++...
T Consensus 249 ~~g~~~~~~~~ 259 (274)
T PRK14265 249 EFSPTEQMFGS 259 (274)
T ss_pred EeCCHHHHHhC
Confidence 99999998764
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=362.22 Aligned_cols=220 Identities=31% Similarity=0.494 Sum_probs=181.2
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCC-----ccEEEECCeecCC--CCH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV-----EGEVLLDGYKIRR--LHL 416 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~-----~G~i~~~g~~~~~--~~~ 416 (1255)
-++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999963 46999999999999999999999999999999999999874 8999999999865 334
Q ss_pred HHHhcccEEeccCCccCcc-cHHHHhccCCC--CC-CHHHHHHHHHHhchHHHHhcC--CCcccchhcCCCCCCChHHHH
Q 000846 417 KWLRSQMGLVNQEPVLFAT-SITENILFGKD--GA-SMDDVISAAKAANAHDFITKL--PDGYETQVGQLGFQMSGGQKQ 490 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~--~~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqrq 490 (1255)
..+|+.++|++|++.+|.. |++||+.++.. .. ..++..+.+. +.+..+ ..++.........+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 155 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE-----RSLRGAALWDEVKDRLKTPATGLSGGQQQ 155 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHH-----HHHHHcCcchhhhhhhcCCcccCCHHHHH
Confidence 5678899999999999885 99999986532 11 2222222211 111111 111222334556799999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 000846 491 RIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELM 569 (1255)
Q Consensus 491 ri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 569 (1255)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++++
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988778999999999999875 9999999999999999999987
Q ss_pred cc
Q 000846 570 NR 571 (1255)
Q Consensus 570 ~~ 571 (1255)
..
T Consensus 236 ~~ 237 (252)
T PRK14272 236 TN 237 (252)
T ss_pred hC
Confidence 64
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=355.32 Aligned_cols=208 Identities=31% Similarity=0.461 Sum_probs=173.0
Q ss_pred EEEEEEEEECCCCC-CCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHH---HHh
Q 000846 1009 IELKNVFFAYPTRP-DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLK---QLR 1084 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~-~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR 1084 (1255)
++++||+++|+... +.++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996321 24699999999999999999999999999999999999999999999999999877643 468
Q ss_pred cceEEEccCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHH
Q 000846 1085 SHIALVSQEPTLFA-GTIRENIAYGKA---DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALAR 1160 (1255)
Q Consensus 1085 ~~i~~V~Qdp~LF~-gTIreNl~~g~~---~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalAR 1160 (1255)
+.++|+||+|.+|. .|+.||+.++.. ..+.++..+ .+.+.++.+ |++........+||+|||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE-----RARAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 89999999999987 699999986532 122222211 122233332 3333344455689999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEE
Q 000846 1161 AILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQKSDTIAVIKNGRV 1223 (1255)
Q Consensus 1161 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~i 1223 (1255)
|++++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++....||+|++|++|++
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999998763 7999999999998778999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=352.13 Aligned_cols=201 Identities=27% Similarity=0.451 Sum_probs=169.2
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 4789999999632 2 39999999999999999999999999999999999999999999999876654 357899
Q ss_pred EeccCCccCcc-cHHHHhccCCCC-C-----CHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHH
Q 000846 425 LVNQEPVLFAT-SITENILFGKDG-A-----SMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARA 497 (1255)
Q Consensus 425 ~v~Q~~~l~~~-ti~~ni~~~~~~-~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARa 497 (1255)
|++|++.+|.+ |++||+.++... . ..+++.++++..++ +........+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGL-----------AGLEKRLPGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCC-----------HHHHhCCcccCCHHHHHHHHHHHH
Confidence 99999999976 999999876421 1 11233334444444 333444556899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 000846 498 LIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESG 563 (1255)
Q Consensus 498 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g 563 (1255)
++.+|+++||||||++||++++..+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999874 38999999999999865 9999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=377.74 Aligned_cols=216 Identities=29% Similarity=0.452 Sum_probs=178.5
Q ss_pred EEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCC----HHHHhcceE
Q 000846 1013 NVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN----LKQLRSHIA 1088 (1255)
Q Consensus 1013 ~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----~~~lR~~i~ 1088 (1255)
|++++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|++|+
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999963 23 4 999999999999999999999999999999999999999999999986532 345688999
Q ss_pred EEccCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 000846 1089 LVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPS 1167 (1255)
Q Consensus 1089 ~V~Qdp~LF~g-TIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~ 1167 (1255)
||||++.+|.. |++||+.++.......+. ...+.++++.+ |++........+||||||||++|||||+++|+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~-----~~~~~~~l~~~--gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSER-----RISFERVIELL--GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHH-----HHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999975 999999886432221111 11122233322 44444455567899999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCHHHHHhhhcCchh
Q 000846 1168 ILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVALSRGGAY 1241 (1255)
Q Consensus 1168 ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~~~eLl~~~~~g~y 1241 (1255)
+|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++... ++..|
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~ 227 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS-PDLPW 227 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC-cCccc
Confidence 9999999999999999999999998753 7899999999999865 999999999999999999999875 44344
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=373.66 Aligned_cols=228 Identities=22% Similarity=0.368 Sum_probs=182.9
Q ss_pred eEEEEeEEEEcCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC----CCccEEEECCeecCCCCHHH
Q 000846 344 EIEFRDVYFCYPSRP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD----PVEGEVLLDGYKIRRLHLKW 418 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~----~~~G~i~~~g~~~~~~~~~~ 418 (1255)
-|+++|++++|+.+. ...+|+||||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 378999999996421 2469999999999999999999999999999999999986 58999999999998877654
Q ss_pred H----hcccEEeccCCc--cCc-ccHHHHhccCCC-----C---CCHHHHHHHHHHhchHHHHhcCCCccc---chhcCC
Q 000846 419 L----RSQMGLVNQEPV--LFA-TSITENILFGKD-----G---ASMDDVISAAKAANAHDFITKLPDGYE---TQVGQL 480 (1255)
Q Consensus 419 ~----r~~i~~v~Q~~~--l~~-~ti~~ni~~~~~-----~---~~~~~~~~~~~~~~~~~~i~~l~~g~~---t~~~~~ 480 (1255)
+ ++.|+||+|+|. ++. .||.+|+..... . ....+. ...+.+.++.+ |++ ......
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~~--gL~~~~~~~~~~ 155 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWR-----KRRAIELLHRV--GIKDHKDAMRSF 155 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHH-----HHHHHHHHHHC--CCCChHHHHhCC
Confidence 4 347999999996 343 489999864210 0 000111 11223344444 443 234566
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCC
Q 000846 481 GFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAG 557 (1255)
Q Consensus 481 g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G 557 (1255)
..+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++.+ |.|+|+|||+++.+. .||+|++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 789999999999999999999999999999999999999999999998754 899999999999996 49999999999
Q ss_pred EEEEecChhHHhccCCCChhHH
Q 000846 558 KVVESGSHNELMNRGEGGEYYQ 579 (1255)
Q Consensus 558 ~i~~~g~~~~l~~~~~~~~~~~ 579 (1255)
+|++.|+++++.+++ ...|.+
T Consensus 236 ~ive~g~~~~i~~~p-~~~y~~ 256 (330)
T PRK15093 236 QTVETAPSKELVTTP-HHPYTQ 256 (330)
T ss_pred EEEEECCHHHHHhCC-CCHHHH
Confidence 999999999998753 334543
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=362.39 Aligned_cols=219 Identities=31% Similarity=0.492 Sum_probs=183.2
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCC-----ccEEEECCeecCC--CC
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV-----EGEVLLDGYKIRR--LH 415 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~-----~G~i~~~g~~~~~--~~ 415 (1255)
+.|+++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999963 35999999999999999999999999999999999999985 8999999998753 34
Q ss_pred HHHHhcccEEeccCCccCcccHHHHhccCCCC--C-CH----HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHH
Q 000846 416 LKWLRSQMGLVNQEPVLFATSITENILFGKDG--A-SM----DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQ 488 (1255)
Q Consensus 416 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 488 (1255)
...+|+.++|++|++.+|..|++||+.++... . +. +.+.++++..++.++ ++...+..+.+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDE-------IKHKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcch-------hhhHhcCCcccCCHHH
Confidence 45678899999999999999999999864211 0 11 122333333333222 2234566778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-hcCEEEEEeC-----CEEE
Q 000846 489 KQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIR-TANLIMVLKA-----GKVV 560 (1255)
Q Consensus 489 rqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~vl~~-----G~i~ 560 (1255)
|||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999998863 4899999999999986 5999999999 9999
Q ss_pred EecChhHHhcc
Q 000846 561 ESGSHNELMNR 571 (1255)
Q Consensus 561 ~~g~~~~l~~~ 571 (1255)
+.|+++++...
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999999764
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=361.96 Aligned_cols=218 Identities=28% Similarity=0.455 Sum_probs=183.2
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCee-----cCCCCHHH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYK-----IRRLHLKW 418 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~-----~~~~~~~~ 418 (1255)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999974 359999999999999999999999999999999999999999999999998 77665543
Q ss_pred ----HhcccEEeccCCc--cCc-ccHHHHhccCC---CCCCHHHHHHHHHHhchHHHHhcCCCccc-chhcCCCCCCChH
Q 000846 419 ----LRSQMGLVNQEPV--LFA-TSITENILFGK---DGASMDDVISAAKAANAHDFITKLPDGYE-TQVGQLGFQMSGG 487 (1255)
Q Consensus 419 ----~r~~i~~v~Q~~~--l~~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgG 487 (1255)
.++.++|++|++. ++. .|+.+|+.+.. ......+.. ..+.++++.+ |++ +..+..+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 444 48899986421 111112221 1234566666 554 4677888999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecC
Q 000846 488 QKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGS 564 (1255)
Q Consensus 488 qrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~ 564 (1255)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ |.|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988743 889999999999996 599999999999999999
Q ss_pred hhHHhcc
Q 000846 565 HNELMNR 571 (1255)
Q Consensus 565 ~~~l~~~ 571 (1255)
++++..+
T Consensus 236 ~~~~~~~ 242 (258)
T PRK11701 236 TDQVLDD 242 (258)
T ss_pred HHHHhcC
Confidence 9998764
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=365.70 Aligned_cols=219 Identities=28% Similarity=0.456 Sum_probs=182.1
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeecCCC--C
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKIRRL--H 415 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~--~ 415 (1255)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||+++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 46899999999963 359999999999999999999999999999999999864 4999999999998643 3
Q ss_pred HHHHhcccEEeccCCccCcccHHHHhccCCC--CC-CHH----HHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHH
Q 000846 416 LKWLRSQMGLVNQEPVLFATSITENILFGKD--GA-SMD----DVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQ 488 (1255)
Q Consensus 416 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~-~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 488 (1255)
...+|++++||+|+|.+|..|++||+.++.. .. ... .+.++++..++.+ ++.......+..|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-------EVSDRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCcc-------chhhHhhCChhhCCHHH
Confidence 3457889999999999998899999987532 11 111 1222222222211 12233456778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhH
Q 000846 489 KQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNE 567 (1255)
Q Consensus 489 rqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~ 567 (1255)
|||++|||||+.+|++|||||||++||+++.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998877789999999999985 599999999999999999999
Q ss_pred Hhcc
Q 000846 568 LMNR 571 (1255)
Q Consensus 568 l~~~ 571 (1255)
+.++
T Consensus 268 ~~~~ 271 (286)
T PRK14275 268 LFTN 271 (286)
T ss_pred HHhC
Confidence 8764
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=348.60 Aligned_cols=191 Identities=24% Similarity=0.377 Sum_probs=164.1
Q ss_pred cEEEEEEEEECCCC-CCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCeecCCCCHHHH
Q 000846 1008 RIELKNVFFAYPTR-PDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYD---PLKGSVFMDEQDIRNYNLKQL 1083 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~-~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~~~~l 1083 (1255)
.+.++||+|.|+.. .++++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999843 35679999999999999999999999999999999999999 89999999999998765 457
Q ss_pred hcceEEEccCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHH
Q 000846 1084 RSHIALVSQEPTLFA-GTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAI 1162 (1255)
Q Consensus 1084 R~~i~~V~Qdp~LF~-gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARAL 1162 (1255)
|++++|+||++.+|. .|++||+.++.. . . ..+....||||||||++|||||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~------~----~------------------~~~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR------C----K------------------GNEFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh------h----c------------------cccchhhCCHHHHHHHHHHHHH
Confidence 889999999998886 599999965421 0 0 1234467999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEc-cCchhh-hhcCEEEEEeCCEEEEec
Q 000846 1163 LKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVA-HRLSTI-QKSDTIAVIKNGRVVEQG 1227 (1255)
Q Consensus 1163 lr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~Ia-Hrl~ti-~~~D~I~Vl~~G~ive~G 1227 (1255)
+++|+||||||||++||+++++.+.+.|++..+ ++|+|+++ |+++.+ ..||++++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998754 56766665 555666 569999999999998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=359.75 Aligned_cols=218 Identities=31% Similarity=0.524 Sum_probs=184.4
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeecCCC--CH
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKIRRL--HL 416 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~--~~ 416 (1255)
.++++||++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||+++... +.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 459999999999999999999999999999999999864 4899999999998653 45
Q ss_pred HHHhcccEEeccCCccCcccHHHHhccCCC--CC-CH----HHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHH
Q 000846 417 KWLRSQMGLVNQEPVLFATSITENILFGKD--GA-SM----DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQK 489 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqr 489 (1255)
..++++++|+||+|.+|+.|++||+.++.. .. .. +++.++++.+++.+++. ...+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-------DKLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-------HHHhCCcccCCHHHH
Confidence 567889999999999999999999987532 11 11 12334444444433332 234566789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 000846 490 QRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNEL 568 (1255)
Q Consensus 490 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l 568 (1255)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. +|++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998865 999999999999999999998
Q ss_pred hcc
Q 000846 569 MNR 571 (1255)
Q Consensus 569 ~~~ 571 (1255)
...
T Consensus 233 ~~~ 235 (250)
T PRK14266 233 FIN 235 (250)
T ss_pred HhC
Confidence 754
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=354.80 Aligned_cols=208 Identities=30% Similarity=0.497 Sum_probs=176.6
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
|+++||+++|+. . ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 789999999963 2 2399999999999999999999999999999999999999999999998765442 56899
Q ss_pred EeccCCccCcc-cHHHHhccCCCCC---C---HHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHH
Q 000846 425 LVNQEPVLFAT-SITENILFGKDGA---S---MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARA 497 (1255)
Q Consensus 425 ~v~Q~~~l~~~-ti~~ni~~~~~~~---~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARa 497 (1255)
|++|++.+|.+ |++||+.++.... . ++++.++++..+ ++..+......||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMG-----------IEDLLARLPGQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcC-----------cHHHHhCCcccCCHHHHHHHHHHHH
Confidence 99999999986 9999998753211 1 122344444444 4444445556899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhc
Q 000846 498 LIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 498 l~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
++++|+++||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999988743 8899999999999864 99999999999999999999875
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=361.91 Aligned_cols=220 Identities=29% Similarity=0.438 Sum_probs=181.9
Q ss_pred eEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCC---ccEEEECCeecCCC-----C
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV---EGEVLLDGYKIRRL-----H 415 (1255)
Q Consensus 344 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~---~G~i~~~g~~~~~~-----~ 415 (1255)
-|+++||++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999963 46999999999999999999999999999999999999986 49999999988653 2
Q ss_pred HHHHhcccEEeccCCccCcc-cHHHHhccCCCCCCH--H---HHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHH
Q 000846 416 LKWLRSQMGLVNQEPVLFAT-SITENILFGKDGASM--D---DVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQK 489 (1255)
Q Consensus 416 ~~~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~--~---~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqr 489 (1255)
...++++++|++|++.+|.. |++||+.++...... . ..........+.+.++.+ |++........+||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHH
Confidence 34567889999999998875 999999876421100 0 000001112234455555 555556667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChh
Q 000846 490 QRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHN 566 (1255)
Q Consensus 490 qri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~-~~~d~i~vl~~G~i~~~g~~~ 566 (1255)
||++||||++.+|++|||||||++||+++.+.+.+.|+++. +|+|+|++||+++.+ ..||+|++|++|++++.|+++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999875 389999999999987 459999999999999999999
Q ss_pred HH
Q 000846 567 EL 568 (1255)
Q Consensus 567 ~l 568 (1255)
++
T Consensus 239 ~~ 240 (262)
T PRK09984 239 QF 240 (262)
T ss_pred Hh
Confidence 86
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=372.02 Aligned_cols=204 Identities=27% Similarity=0.489 Sum_probs=173.5
Q ss_pred CccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccEEeccCCccCcc-cHH
Q 000846 360 TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFAT-SIT 438 (1255)
Q Consensus 360 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~ 438 (1255)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+++||+||++.++.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999875 345678899999999999876 999
Q ss_pred HHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 000846 439 ENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDA 516 (1255)
Q Consensus 439 ~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~~~illlDEpts~lD~ 516 (1255)
||+.+... ..+..+.. ..+.+.++.+ |++........+||||||||++|||||+++|++|||||||++||+
T Consensus 85 e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAE-----ERAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred HHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 99986421 11111111 1123444544 555555666789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhcc
Q 000846 517 QSERIVQEAIDKVS-KGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 517 ~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999999875 48999999999999864 999999999999999999998653
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=357.02 Aligned_cols=215 Identities=33% Similarity=0.512 Sum_probs=181.6
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
|+++|++++|+. +++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 478999999973 359999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EeccCCccCcc-cHHHHhccCCCC--CCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccC
Q 000846 425 LVNQEPVLFAT-SITENILFGKDG--ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501 (1255)
Q Consensus 425 ~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~ 501 (1255)
|+||+|.+|.+ |++||+.++... .+..+. ...+.+.++.+ |+.........+||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKI-----KARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHH-----HHHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 999999875421 111111 11223445554 444445556679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhcc
Q 000846 502 PKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 502 ~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 571 (1255)
|+++||||||++||+++++.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999998754 7999999999998754 999999999999999999998753
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=360.28 Aligned_cols=226 Identities=24% Similarity=0.419 Sum_probs=184.6
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCee-----cCCCCHHH
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQD-----IRNYNLKQ 1082 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~d-----i~~i~~~~ 1082 (1255)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +..++...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999963 358999999999999999999999999999999999999999999999988 77766543
Q ss_pred ----HhcceEEEccCCC--C-CcccHHHHHhcCC--CC-CCHHHHHHHHHHhcHHHHHHccccccc-cccCCCCCCCChH
Q 000846 1083 ----LRSHIALVSQEPT--L-FAGTIRENIAYGK--AD-ARESEIKKAAVLANAHEFISGMKDGYD-TYCGERGVQLSGG 1151 (1255)
Q Consensus 1083 ----lR~~i~~V~Qdp~--L-F~gTIreNl~~g~--~~-~~~~ei~~al~~a~l~~~i~~lp~gld-t~vge~G~~LSgG 1151 (1255)
+++.++|++|+|. + +..|+.+|+.+.. .. ....+. ...+.++++.+ |++ +........||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHH
Confidence 3467999999985 2 3458888985321 00 011111 12344566655 343 3556677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 000846 1152 QKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGS 1228 (1255)
Q Consensus 1152 QkQrlalARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G~ 1228 (1255)
||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. .+.|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999864 37899999999999975 99999999999999999
Q ss_pred HHHHHhhhcCchhHHH
Q 000846 1229 HNELVALSRGGAYYSL 1244 (1255)
Q Consensus 1229 ~~eLl~~~~~g~y~~l 1244 (1255)
++++... +...|.++
T Consensus 233 ~~~~~~~-~~~~~~~~ 247 (253)
T TIGR02323 233 TDQVLDD-PQHPYTQL 247 (253)
T ss_pred HHHHhcC-CCCHHHHH
Confidence 9999864 34445543
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=338.04 Aligned_cols=171 Identities=57% Similarity=0.923 Sum_probs=161.7
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCCHHHHhcceE
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1088 (1255)
|+++|++++|++. +.++++|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999743 236999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 000846 1089 LVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSI 1168 (1255)
Q Consensus 1089 ~V~Qdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~p~I 1168 (1255)
|+||+|.+|+.|++||+ ||||||||++||||++++|++
T Consensus 80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCE
Q 000846 1169 LLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGR 1222 (1255)
Q Consensus 1169 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ 1222 (1255)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999998877899999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=357.12 Aligned_cols=214 Identities=33% Similarity=0.512 Sum_probs=179.9
Q ss_pred EEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccCCCccEEEECCeecCCCCHHHHhcccE
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 424 (1255)
|+++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 468999999973 359999999999999999999999999999999999999999999999999876654 267899
Q ss_pred EeccCCccCcc-cHHHHhccCCC--CCCHHHHHHHHHHhchHHHHhcCCCcccchhcCCCCCCChHHHHHHHHHHHhccC
Q 000846 425 LVNQEPVLFAT-SITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRD 501 (1255)
Q Consensus 425 ~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal~~~ 501 (1255)
|++|++.+|.+ |++||+.++.. ..+..... ..+.+.++.+ |++........+||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIK-----ERVAEALDLV--QLEGYANRKPSQLSGGQQQRVAIARALVNE 148 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 99999986532 11111111 1112233333 455455556679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhc
Q 000846 502 PKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 502 ~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 570 (1255)
|+++||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 999999999999999999999999998753 899999999999985 599999999999999999988865
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=366.85 Aligned_cols=226 Identities=29% Similarity=0.489 Sum_probs=184.7
Q ss_pred ceEEEEeEEEEcCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCccEEEECCeecCCC--C
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD-----PVEGEVLLDGYKIRRL--H 415 (1255)
Q Consensus 343 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~--~ 415 (1255)
..|+++|++++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 36999999999974 359999999999999999999999999999999999986 6899999999998643 3
Q ss_pred HHHHhcccEEeccCCccCcccHHHHhccCCCCCCH-H--------HHH-HHHHHhchHHHHhc--CCCcccchhcCCCCC
Q 000846 416 LKWLRSQMGLVNQEPVLFATSITENILFGKDGASM-D--------DVI-SAAKAANAHDFITK--LPDGYETQVGQLGFQ 483 (1255)
Q Consensus 416 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~-~--------~~~-~~~~~~~~~~~i~~--l~~g~~t~~~~~g~~ 483 (1255)
...+|+.++||+|++.+|+.||+||+.++...... + ... .......+.+.+.. ++.++++..+..+.+
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 200 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALG 200 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcccc
Confidence 55678899999999999999999999976321000 0 000 00001111222222 233445667788899
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEE-EEEeCCEEEE
Q 000846 484 MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR-TANLI-MVLKAGKVVE 561 (1255)
Q Consensus 484 LSgGqrqri~lARal~~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i-~vl~~G~i~~ 561 (1255)
||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++ ++|++|++++
T Consensus 201 LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~ 280 (305)
T PRK14264 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVE 280 (305)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEE
Confidence 999999999999999999999999999999999999999999999877789999999999985 59997 5789999999
Q ss_pred ecChhHHhcc
Q 000846 562 SGSHNELMNR 571 (1255)
Q Consensus 562 ~g~~~~l~~~ 571 (1255)
.|+++++.+.
T Consensus 281 ~g~~~~~~~~ 290 (305)
T PRK14264 281 YDDTDKIFEN 290 (305)
T ss_pred eCCHHHHHhC
Confidence 9999998754
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=341.05 Aligned_cols=172 Identities=44% Similarity=0.702 Sum_probs=159.5
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCeecCCCC--HHHHhcc
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN--LKQLRSH 1086 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~vs~~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--~~~lR~~ 1086 (1255)
|+++|++++|+. .++++|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 578999999963 46999999999999999999999999999999999999999999999999998876 5678899
Q ss_pred eEEEccCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHccccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 000846 1087 IALVSQEPTLFA-GTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKN 1165 (1255)
Q Consensus 1087 i~~V~Qdp~LF~-gTIreNl~~g~~~~~~~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQkQrlalARALlr~ 1165 (1255)
++|+||+|.+|. .|++||+.+. ||||||||++|||||+++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 999999999886 5999999643 999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCE
Q 000846 1166 PSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNGR 1222 (1255)
Q Consensus 1166 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ 1222 (1255)
|+++||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.+ ||+|++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999998764 6899999999999985 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=355.47 Aligned_cols=214 Identities=25% Similarity=0.427 Sum_probs=173.5
Q ss_pred EEEEeEEEEcCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHhcccC---CCccEEEECCeecCCCCHHHHh
Q 000846 345 IEFRDVYFCYPSRP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD---PVEGEVLLDGYKIRRLHLKWLR 420 (1255)
Q Consensus 345 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~r 420 (1255)
+.++||+++|++.+ .+++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999997542 3579999999999999999999999999999999999999 99999999999875 24568
Q ss_pred cccEEeccCCccCcc-cHHHHhccCCCCCCHHHHHHHHHHhchHH-HHhcCCCcccchhcCCCCCCChHHHHHHHHHHHh
Q 000846 421 SQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAHD-FITKLPDGYETQVGQLGFQMSGGQKQRIAIARAL 498 (1255)
Q Consensus 421 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~~~g~~LSgGqrqri~lARal 498 (1255)
++++|++|++.+|++ |++||+.++..................++ .+..+ ++.........+||||||||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 899999999999987 99999987521110000000111111122 33333 454455667789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCc-hhh-hhcCEEEEEeCCEEEEec
Q 000846 499 IRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRL-STI-RTANLIMVLKAGKVVESG 563 (1255)
Q Consensus 499 ~~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~-~~~-~~~d~i~vl~~G~i~~~g 563 (1255)
+++|++|||||||++||+.+...+.+.++++. +++|+|++||++ +.+ ..||++++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998874 488999999998 455 569999999999999875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1255 | ||||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 0.0 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 8e-79 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-77 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 6e-78 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 4e-77 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 9e-76 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-75 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-67 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-66 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-65 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-58 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-55 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-54 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-53 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-53 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 6e-50 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-53 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-49 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-53 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 6e-50 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-53 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 6e-50 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 5e-53 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-49 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-52 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-52 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-48 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-52 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-48 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-51 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-50 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 9e-50 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 1e-26 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-24 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-24 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-23 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-22 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-21 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 6e-21 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-20 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-20 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 7e-20 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 3e-19 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 3e-19 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-19 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-19 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 5e-19 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 5e-19 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-18 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-18 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-18 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-18 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-18 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-18 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-18 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 3e-18 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 5e-18 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 6e-18 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-18 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-17 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-17 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 3e-17 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 3e-17 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-17 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-16 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 3e-16 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-16 | ||
| 1g29_1 | 372 | Malk Length = 372 | 7e-16 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-15 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-15 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 3e-15 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-15 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 6e-15 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 7e-15 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 8e-15 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-14 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-14 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 2e-14 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-14 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 3e-14 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-13 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 8e-13 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-12 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 4e-12 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 3e-10 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 5e-10 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 2e-09 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 3e-09 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 3e-08 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 8e-08 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 8e-08 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-07 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 2e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 7e-07 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 1e-06 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 2e-05 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 2e-05 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 2e-05 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 7e-05 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 9e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 2e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 2e-04 | ||
| 3uwx_A | 972 | Crystal Structure Of Uvra-Uvrb Complex Length = 972 | 2e-04 | ||
| 2r6f_A | 972 | Crystal Structure Of Bacillus Stearothermophilus Uv | 2e-04 | ||
| 3zqj_A | 993 | Mycobacterium Tuberculosis Uvra Length = 993 | 3e-04 | ||
| 3ux8_A | 670 | Crystal Structure Of Uvra Length = 670 | 3e-04 |
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex Length = 972 | Back alignment and structure |
|
| >pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra Length = 972 | Back alignment and structure |
|
| >pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra Length = 993 | Back alignment and structure |
|
| >pdb|3UX8|A Chain A, Crystal Structure Of Uvra Length = 670 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1255 | |||
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 0.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 0.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-176 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-161 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-174 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-157 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-170 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-156 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-160 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-157 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-147 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-141 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-137 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-135 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-137 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-130 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-133 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-132 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-125 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-124 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-106 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-101 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 5e-62 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-61 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-48 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 3e-46 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-46 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 6e-45 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 4e-45 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 3e-43 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 6e-44 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 5e-39 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 1e-42 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-39 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-40 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-37 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-38 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 9e-38 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-37 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-35 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 3e-35 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 2e-25 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 4e-34 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-27 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-33 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-28 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 3e-32 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-28 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-32 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-31 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-28 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-27 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-31 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-27 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 2e-31 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 8e-28 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 3e-31 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 9e-27 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 4e-31 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 5e-29 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-31 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 6e-31 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-25 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-25 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 6e-31 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 9e-25 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 7e-31 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 7e-30 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 7e-27 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 7e-26 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-30 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-25 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 4e-30 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 9e-26 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-29 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 6e-29 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-29 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-28 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-26 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 6e-26 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-25 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-22 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-21 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 7e-18 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 6e-20 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 8e-16 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 1e-19 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 9e-16 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-19 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 7e-17 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 2e-19 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 4e-15 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 4e-19 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 6e-16 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 5e-17 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 3e-12 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-14 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 8e-14 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 6e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-04 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 5e-12 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 3e-09 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 2e-11 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 1e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 2e-07 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 3e-06 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 5e-07 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 9e-07 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 7e-05 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 1e-04 |
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 1599 bits (4142), Expect = 0.0
Identities = 465/1266 (36%), Positives = 748/1266 (59%), Gaps = 49/1266 (3%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSN--------- 57
+FRYA D+L ML GT+ +I G+ PLM+ + + + + + + S ++
Sbjct: 38 MFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKR 97
Query: 58 -------DTVDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVG 110
+ + Y + GV + A+++ W A RQ ++R ++ +++ QE+G
Sbjct: 98 AMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIG 157
Query: 111 FFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSL 170
+FD + G ++ + +++D + I I +KI ++TFF + F W+L+L
Sbjct: 158 WFDVHDVG-----ELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTL 212
Query: 171 AALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIR 230
L ++ + + ++ K++ K + +Y AG +AE+ +++IRTV ++ + + L R
Sbjct: 213 VILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELER 272
Query: 231 FSNALQKTMELGIKQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGV 289
++N L++ LGIK+ + MG+ +IY +A W G+ LV K G +
Sbjct: 273 YNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFF 332
Query: 290 SIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRD 349
S+++G SV A PN+ A A+ AA +F+++D P+ID+ K G ++G +EF++
Sbjct: 333 SVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKN 392
Query: 350 VYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGY 409
++F YPSR + +L+GLNL+V +G++V LVG SG GKSTT+ L+QR YDP++G V +DG
Sbjct: 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQ 452
Query: 410 KIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKL 469
IR +++++LR +G+V+QEPVLFAT+I ENI +G++ +MD++ A K ANA+DFI KL
Sbjct: 453 DIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL 512
Query: 470 PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV 529
P ++T VG+ G Q+SGGQKQRIAIARAL+R+PKILLLDEATSALD +SE +VQ A+DK
Sbjct: 513 PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA 572
Query: 530 SKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASE 589
+GRTT++IAHRLST+R A++I G +VE G+H+ELM G Y+++V Q +E
Sbjct: 573 REGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE--KGIYFKLVMTQTAGNE 630
Query: 590 NDTSNDTFNDFSHQMDAINLYKRTIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQ 649
+ N+ K + M S + + + S T S
Sbjct: 631 IELGNEAC-------------KSKDEIDNLDMSSKDSGSSLIRRRS------TRKSICGP 671
Query: 650 YDPDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSL 709
+D D S WR+LK+N EW ++G +I +G +QP + +
Sbjct: 672 HDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKV 731
Query: 710 ISIYFRTDKSE-IKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGK 768
+ ++ E + S SL FL + +++FI+ LQ ++F GE LTKR+R +
Sbjct: 732 VGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKS 791
Query: 769 LMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSW 828
++ ++ WFD NT+ A+ RLA +A V+ G R++++ Q I I+ L+ W
Sbjct: 792 MLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGW 851
Query: 829 RLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKR 888
+LTL+++A+ P++ + ++ A K +K + ++A+EA+ N RT+ + + +++
Sbjct: 852 QLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQK 911
Query: 889 ILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLF 948
++ ++L+ P ++K + GI +Q S A A+ +G L+TQ+L+T E++
Sbjct: 912 FETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVL 971
Query: 949 QAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGR 1008
F ++F A + + S D +K + + + I+++ EID S QG + G
Sbjct: 972 LVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNM-LEGN 1030
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
++ V F YPTRP +L+GLSL+++ G+T+ALVG SGCGKST++ LLERFYDP+ GSV
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGK--ADARESEIKKAAVLANA 1126
F+D ++I+ N++ LR+ + +VSQEP LF +I ENIAYG EI +AA AN
Sbjct: 1091 FLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANI 1150
Query: 1127 HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
H+FI + D Y+T G++G QLSGGQKQRIA+ARA+++ P ILLLDEATSALD+ SE +V
Sbjct: 1151 HQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210
Query: 1187 QEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIK 1246
QEAL+K GRTC+V+AHRLSTIQ +D I VI+NG+V E G+H +L+A + G Y+S++
Sbjct: 1211 QEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA--QKGIYFSMVS 1268
Query: 1247 PQGGSS 1252
Q G+
Sbjct: 1269 VQAGAK 1274
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 681 bits (1759), Expect = 0.0
Identities = 208/592 (35%), Positives = 343/592 (57%), Gaps = 9/592 (1%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLR 66
+ + + + G +I +G P + S V+ + N + ++L
Sbjct: 696 ILKLN-STEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLL 754
Query: 67 LLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVV 126
L + I ++ F++G + + E T R+R KS+LRQ+V +FD + + +
Sbjct: 755 FLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGA---LT 811
Query: 127 STISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLF 186
+ ++ND+ ++ A +++ ++ ++ S I W+L+L L + + + G++
Sbjct: 812 TRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVE 871
Query: 187 GKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQG 246
K++ G +K + +G IA +A+ + RTV S E + ++ +LQ +K+
Sbjct: 872 MKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKA 931
Query: 247 FIKGLLMG-SMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNL 305
+ G+ + M+Y +A G+YLVT++ ++ + +I+ G ++V
Sbjct: 932 HVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFA 991
Query: 306 TAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQG 365
+A V+A+ I ++++TP ID+ G + + G ++F V F YP+RP VLQG
Sbjct: 992 PDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQG 1051
Query: 366 LNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGL 425
L+L V G+++ LVG SG GKST + LL+RFYDP+ G V LDG +I++L+++WLR+Q+G+
Sbjct: 1052 LSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGI 1111
Query: 426 VNQEPVLFATSITENILFGKDG--ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQ 483
V+QEP+LF SI ENI +G + S ++++ AAK AN H FI LPD Y T+VG G Q
Sbjct: 1112 VSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ 1171
Query: 484 MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLS 543
+SGGQKQRIAIARAL+R P ILLLDEATSALD +SE++VQEA+DK +GRT ++IAHRLS
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLS 1231
Query: 544 TIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASENDTSND 595
TI+ A+LI+V++ GKV E G+H +L+ + G Y+ MV +Q A + +
Sbjct: 1232 TIQNADLIVVIQNGKVKEHGTHQQLLAQK--GIYFSMVSVQAGAKRSYVHHH 1281
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 531 bits (1369), Expect = e-176
Identities = 179/579 (30%), Positives = 303/579 (52%), Gaps = 15/579 (2%)
Query: 672 WRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLF 731
RL P ++ IA I + A + L+ F + + L
Sbjct: 14 RRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV---LLWMPLV 70
Query: 732 FLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARL 791
+G+ +L I+S + Y S + K+ +R +L G +M + +FD+ ++ + +R+
Sbjct: 71 VIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRI 128
Query: 792 ATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVL 851
++ V S + +V+ + +I+ SW+L+++++ + P+V + +
Sbjct: 129 TYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKR 188
Query: 852 MKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYS 911
+S++ + + + A + + H+ + F Q+ F + + + +K S
Sbjct: 189 FRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 248
Query: 912 GIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYV-IAEAGSMTSD 970
I Q + + A + + +T + + ++ +
Sbjct: 249 SISDPIIQLIASLALAFVLYAASFPSVMDSLTAGT-ITVVFSSMIALMRPLKSLTNVNAQ 307
Query: 971 ISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGL 1030
+G A +++FAILD E D +G+ + + G +E +NV F YP R + L+ +
Sbjct: 308 FQRGMAACQTLFAILDSEQEKD----EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNI 362
Query: 1031 SLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALV 1090
+LKI AGKTVALVG+SG GKSTI L+ RFYD +G + MD D+R Y L LR+ +ALV
Sbjct: 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALV 422
Query: 1091 SQEPTLFAGTIRENIAYGKADAR-ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLS 1149
SQ LF T+ NIAY + + +I++AA +A A +FI+ M +G DT GE GV LS
Sbjct: 423 SQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 482
Query: 1150 GGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTI 1209
GGQ+QRIA+ARA+L++ IL+LDEATSALD+ SE +Q AL+++ RT +V+AHRLSTI
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI 542
Query: 1210 QKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
+++D I V+++G +VE+G+H+EL+A + G Y L K Q
Sbjct: 543 EQADEIVVVEDGIIVERGTHSELLA--QHGVYAQLHKMQ 579
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 492 bits (1269), Expect = e-161
Identities = 175/582 (30%), Positives = 293/582 (50%), Gaps = 22/582 (3%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLR 66
L+ K ++ I I + M+ +L +++D + S+ + L
Sbjct: 16 LWPTI-APFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV----LLWMPLV 70
Query: 67 LLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVV 126
++ + I G+++++ C + + + MR ++ V FFD Q G ++
Sbjct: 71 VIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTG-----TLL 125
Query: 127 STISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLF 186
S I+ DS + + + + ++ + F SW+LS+ + L + + +
Sbjct: 126 SRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVV 185
Query: 187 GKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQG 246
K + M + G AEQ + + V + + RF K G+K
Sbjct: 186 SKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 245
Query: 247 FIKGLLMGSMGMI-YVGWAFQAWVGSYLVTEKGEKGGSI--FVAGVSIIMGGLSVLGALP 303
+ + +I + AF + S+ G+I + + +M L L +
Sbjct: 246 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVN 305
Query: 304 NLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVL 363
A +F ++D D + + G++EFR+V F YP R + L
Sbjct: 306 A--QFQRGMAACQTLFAILDSEQEKDEGKR---VIDRATGDLEFRNVTFTYPGR-EVPAL 359
Query: 364 QGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423
+ +NL++PAGK+V LVG SGSGKST +L+ RFYD EG +L+DG+ +R L LR+Q+
Sbjct: 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419
Query: 424 GLVNQEPVLFATSITENILFGK-DGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGF 482
LV+Q LF ++ NI + + + S + + AA+ A A DFI K+ +G +T +G+ G
Sbjct: 420 ALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGV 479
Query: 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRL 542
+SGGQ+QRIAIARAL+RD IL+LDEATSALD +SER +Q A+D++ K RT+L+IAHRL
Sbjct: 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL 539
Query: 543 STIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQ 584
STI A+ I+V++ G +VE G+H+EL+ + G Y Q+ ++Q
Sbjct: 540 STIEQADEIVVVEDGIIVERGTHSELLAQ--HGVYAQLHKMQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 525 bits (1356), Expect = e-174
Identities = 171/578 (29%), Positives = 289/578 (50%), Gaps = 15/578 (2%)
Query: 673 RLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFF 732
RL ++ IA + + A + L+ F +S R L
Sbjct: 15 RLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNF---LRILPFMI 71
Query: 733 LGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLA 792
LG+ + +S Y S + + ++R +L M + +FDQ ++ + +R+
Sbjct: 72 LGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTGGLLSRIT 129
Query: 793 TEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLM 852
++ V + +V+ + + SW+L+LV+I V P+V + +
Sbjct: 130 YDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRF 189
Query: 853 KSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSG 912
+ ++ + A + A + + H+ + ++ Q+ F + +++++K
Sbjct: 190 RKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQS 249
Query: 913 IGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYV-IAEAGSMTSDI 971
I Q + + + + +TP F +F + S+TS+
Sbjct: 250 IADPVIQMIASLALFAVLFLASVDSIRAELTPGT-FTVVFSAMFGLMRPLKALTSVTSEF 308
Query: 972 SKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLS 1031
+G A +++F ++D +E D + +R + G +++K+V F Y + ++ L +S
Sbjct: 309 QRGMAACQTLFGLMDLETERDNGK---YEAER-VNGEVDVKDVTFTYQGK-EKPALSHVS 363
Query: 1032 LKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVS 1091
I GKTVALVG+SG GKSTI L RFYD GS+ +D D+R+Y L LR H ALVS
Sbjct: 364 FSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVS 423
Query: 1092 QEPTLFAGTIRENIAYG-KADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSG 1150
Q LF TI NIAY + + +I++AA A+A EFI M G DT GE G LSG
Sbjct: 424 QNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSG 483
Query: 1151 GQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQ 1210
GQ+QR+A+ARA+L++ +L+LDEATSALD+ SE +Q AL+++ +T +V+AHRLSTI+
Sbjct: 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE 543
Query: 1211 KSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
++D I V+ G ++E+G H +L L++ GAY L + Q
Sbjct: 544 QADEILVVDEGEIIERGRHADL--LAQDGAYAQLHRIQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 482 bits (1242), Expect = e-157
Identities = 164/582 (28%), Positives = 271/582 (46%), Gaps = 22/582 (3%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLR 66
L+ Y K ++ TI + + M+ +L ++++ + S+ +
Sbjct: 16 LWTYI-RLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNF----LRILPFM 70
Query: 67 LLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVV 126
+L + GLS F C + + +MR + V FFD + G ++
Sbjct: 71 ILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTG-----GLL 125
Query: 127 STISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLF 186
S I+ DS + A + + + ++ L F SW+LSL + + +
Sbjct: 126 SRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFV 185
Query: 187 GKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQG 246
K + M + G AEQ + + V SY + RF + +K
Sbjct: 186 SKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLV 245
Query: 247 FIKGLLMGSMGMI-YVGWAFQAWVGSYLVTEKGEKGGSI--FVAGVSIIMGGLSVLGALP 303
+ + + MI + ++ S G+ + + +M L L ++
Sbjct: 246 SAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVT 305
Query: 304 NLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVL 363
+ A +F ++D D V GE++ +DV F Y + + L
Sbjct: 306 S--EFQRGMAACQTLFGLMDLETERDNGKY---EAERVNGEVDVKDVTFTYQGK-EKPAL 359
Query: 364 QGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423
++ +P GK+V LVG SGSGKST L RFYD G + LDG+ +R L LR
Sbjct: 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419
Query: 424 GLVNQEPVLFATSITENILFGKDG-ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGF 482
LV+Q LF +I NI + +G + + + AA+ A+A +FI +P G +T +G+ G
Sbjct: 420 ALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGT 479
Query: 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRL 542
+SGGQ+QR+AIARAL+RD +L+LDEATSALD +SER +Q A+D++ K +T L+IAHRL
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRL 539
Query: 543 STIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQ 584
STI A+ I+V+ G+++E G H +L+ + G Y Q+ +Q
Sbjct: 540 STIEQADEILVVDEGEIIERGRHADLLAQ--DGAYAQLHRIQ 579
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 515 bits (1329), Expect = e-170
Identities = 168/581 (28%), Positives = 275/581 (47%), Gaps = 13/581 (2%)
Query: 673 RLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTL---- 728
R L+ P I I + + + I K L
Sbjct: 4 RYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAI 63
Query: 729 SLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAIC 788
+ ++ ++ Y K+ +R+KL L ++ N +
Sbjct: 64 GIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQVI 121
Query: 789 ARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSR 848
+R+ + + + + + + + + L +LTL + + P I + Y
Sbjct: 122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 849 NVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHS 908
++ + + +A E E V + +F+ + F + +LKH+
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241
Query: 909 WYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYV-IAEAGSM 967
++ + + G L IT L AF+ L + + +
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLA-AFVGYLELLFGPLRRLVAS 300
Query: 968 TSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMIL 1027
+ +++ ++ VF ++D +I + + I+ +GRI++ +V F Y + IL
Sbjct: 301 FTTLTQSFASMDRVFQLIDEDYDI-KNGVGAQPIEI-KQGRIDIDHVSFQYNDN-EAPIL 357
Query: 1028 KGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087
K ++L IE G+TVA VG SG GKST+I L+ RFYD G + +D +I+++ LR+ I
Sbjct: 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417
Query: 1088 ALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQ 1147
LV Q+ LF+ T++ENI G+ A + E+ +AA +ANAH+FI + GYDT GERGV+
Sbjct: 418 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477
Query: 1148 LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLS 1207
LSGGQKQR+++AR L NP IL+LDEATSALD SES++QEAL+ + RT ++VAHRLS
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 537
Query: 1208 TIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
TI +D I VI+NG +VE G+H EL +++ GAY L Q
Sbjct: 538 TITHADKIVVIENGHIVETGTHREL--IAKQGAYEHLYSIQ 576
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 480 bits (1237), Expect = e-156
Identities = 174/573 (30%), Positives = 285/573 (49%), Gaps = 14/573 (2%)
Query: 17 LLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGL 76
+ I G M PL++ + + ++ + + L I
Sbjct: 17 FATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPP 76
Query: 77 SAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSI 136
F+ T+ + +R + + F+ + G QV+S + ND
Sbjct: 77 IEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVG-----QVISRVINDVEQT 131
Query: 137 QVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMK 196
+ I + N T L F L +L+LAAL + +I+ +F + + +
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191
Query: 197 MIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSM 256
++ G + V I V S+ E F + +K ++
Sbjct: 192 RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAI 251
Query: 257 GMI-YVGWAFQAWVGSYLVTEKGEKGGSI--FVAGVSIIMGGLSVLGALPNLTAITEAKV 313
+ +G VG+YL G++ FV + ++ G L L A +T++
Sbjct: 252 NTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTT--LTQSFA 309
Query: 314 AATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAG 373
+ R+F+++D I + + + +G I+ V F Y + +L+ +NL + G
Sbjct: 310 SMDRVFQLIDEDYDI-KNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKG 367
Query: 374 KSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLF 433
++V VG SG GKST I L+ RFYD G++L+DG+ I+ LR+Q+GLV Q+ +LF
Sbjct: 368 ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF 427
Query: 434 ATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIA 493
+ ++ ENIL G+ A+ ++V+ AAK ANAHDFI LP GY+T+VG+ G ++SGGQKQR++
Sbjct: 428 SDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLS 487
Query: 494 IARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMV 553
IAR + +P IL+LDEATSALD +SE I+QEA+D +SK RTTLI+AHRLSTI A+ I+V
Sbjct: 488 IARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVV 547
Query: 554 LKAGKVVESGSHNELMNRGEGGEYYQMVELQQM 586
++ G +VE+G+H EL+ + G Y + +Q +
Sbjct: 548 IENGHIVETGTHRELIAK--QGAYEHLYSIQNL 578
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 478 bits (1233), Expect = e-160
Identities = 115/271 (42%), Positives = 163/271 (60%), Gaps = 6/271 (2%)
Query: 328 IDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKS 387
+ A ++G ++F+DV F YP+ P+ VLQGL + GK LVG +GSGKS
Sbjct: 1 MSPLSG-SLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59
Query: 388 TTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDG 447
T ALLQ Y P G+VLLDG + + +L +Q+ V QEP+LF S ENI +G
Sbjct: 60 TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119
Query: 448 -ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILL 506
+M+++ + A + AHDFI+ P GY+T+VG+ G Q+SGGQ+Q +A+ARALIR P++L+
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 507 LDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKVVESGS 564
LD ATSALDA ++ VQ + + + RT L+I +LS A+ I+ LK G V E G+
Sbjct: 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239
Query: 565 HNELMNRGEGGEYYQMVELQQMASENDTSND 595
H +LM R GG Y MVE S+ +
Sbjct: 240 HLQLMER--GGCYRSMVEALAAPSDAAAHHH 268
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 469 bits (1209), Expect = e-157
Identities = 108/265 (40%), Positives = 157/265 (59%), Gaps = 7/265 (2%)
Query: 991 IDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGK 1050
+ P S G M+G ++ ++V FAYP P+ +L+GL+ + GK ALVG +G GK
Sbjct: 1 MSPLS--GSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGK 58
Query: 1051 STIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKA 1110
ST+ LL+ Y P G V +D + + Y+ L + +A V QEP LF + RENIAYG
Sbjct: 59 STVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLT 118
Query: 1111 D-ARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSIL 1169
EI A+ + AH+FISG GYDT GE G QLSGGQ+Q +ALARA+++ P +L
Sbjct: 119 RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLL 178
Query: 1170 LLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQG 1227
+LD ATSALD+ ++ VQ L + RT +++ +LS +++ I +K G V EQG
Sbjct: 179 ILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQG 238
Query: 1228 SHNELVALSRGGAYYSLIKPQGGSS 1252
+H +L+ RGG Y S+++ S
Sbjct: 239 THLQLME--RGGCYRSMVEALAAPS 261
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 442 bits (1140), Expect = e-147
Identities = 117/245 (47%), Positives = 163/245 (66%), Gaps = 2/245 (0%)
Query: 341 VRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV 400
+I FR++ F Y +L +NL + G+ +G+VG SGSGKST L+QRFY P
Sbjct: 4 HHHDITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 62
Query: 401 EGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAA 460
G+VL+DG+ + WLR Q+G+V Q+ VL SI +NI G S++ VI AAK A
Sbjct: 63 NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLA 122
Query: 461 NAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER 520
AHDFI++L +GY T VG+ G +SGGQ+QRIAIARAL+ +PKIL+ DEATSALD +SE
Sbjct: 123 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 521 IVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQM 580
++ + K+ KGRT +IIAHRLST++ A+ I+V++ GK+VE G H EL++ Y +
Sbjct: 183 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYL 241
Query: 581 VELQQ 585
+LQ
Sbjct: 242 YQLQS 246
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 427 bits (1101), Expect = e-141
Identities = 99/245 (40%), Positives = 151/245 (61%), Gaps = 2/245 (0%)
Query: 1004 QMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP 1063
I +N+ F Y +IL ++L I+ G+ + +VG+SG GKST+ L++RFY P
Sbjct: 3 HHHHDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61
Query: 1064 LKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVL 1123
G V +D D+ + LR + +V Q+ L +I +NI+ ++ AA L
Sbjct: 62 ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL 121
Query: 1124 ANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183
A AH+FIS +++GY+T GE+G LSGGQ+QRIA+ARA++ NP IL+ DEATSALD SE
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 1184 SLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYS 1243
++ + K+ GRT +++AHRLST++ +D I V++ G++VEQG H EL++ Y
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSY 240
Query: 1244 LIKPQ 1248
L + Q
Sbjct: 241 LYQLQ 245
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 417 bits (1074), Expect = e-137
Identities = 112/241 (46%), Positives = 154/241 (63%), Gaps = 5/241 (2%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+ ++V FAY IL+ +S + + +A G SG GKSTI LLERFY P G +
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYG-KADARESEIKKAAVLANAH 1127
+D Q I N +L+ RS I VSQ+ + AGTIREN+ YG + D + ++ + LA A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
F+ M D +T GERGV++SGGQ+QR+A+ARA L+NP IL+LDEAT++LDS SES+VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1188 EALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKP 1247
+AL+ +M GRT +V+AHRLSTI +D I I+ G++ G HNELVA Y +
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA--THPLYAKYVSE 237
Query: 1248 Q 1248
Q
Sbjct: 238 Q 238
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 412 bits (1061), Expect = e-135
Identities = 101/246 (41%), Positives = 152/246 (61%), Gaps = 5/246 (2%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+ R V F Y +L+ ++ + G SG GKST +LL+RFY P GE+
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDG-ASMDDVISAAKAANAH 463
+DG I + L+ RSQ+G V+Q+ + A +I EN+ +G +G + +D+ A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 464 DFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQ 523
F+ +PD T+VG+ G ++SGGQ+QR+AIARA +R+PKIL+LDEAT++LD++SE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 524 EAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVEL 583
+A+D + KGRTTL+IAHRLSTI A+ I ++ G++ SG HNEL+ Y + V
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT--HPLYAKYVSE 237
Query: 584 QQMASE 589
Q +
Sbjct: 238 QLTVGQ 243
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 430 bits (1108), Expect = e-137
Identities = 170/594 (28%), Positives = 296/594 (49%), Gaps = 40/594 (6%)
Query: 669 PSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRT-DKSEIKSKSRT 727
+ RLL P + ++ + S + ++ Y +G I + F +
Sbjct: 23 ATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPR---- 78
Query: 728 LSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAI 787
L + L + LQ + + + R+R++L KL +G+FD+ I
Sbjct: 79 YMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR--TPHGDI 136
Query: 788 CARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYS 847
+R+ + + + +++G+ + I + I+ ++ L+LV +++ PL +
Sbjct: 137 ISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTV----- 191
Query: 848 RNVLMKSMAGKARKA----QKEGSQLAS---EAVINHRTITAFSSQKRILGLFKETLRGP 900
++ + ++ + RK Q+ QL E + I F+ +++ + F
Sbjct: 192 --LITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESL 249
Query: 901 KEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYV 960
++ K +SG+ N AL +GG L +++IT + F+ Y
Sbjct: 250 RKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTI-ATFIG-----YS 303
Query: 961 ------IAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNV 1014
+ E + + I + +F ILD E D P +++ ++RG IE KNV
Sbjct: 304 RQFTRPLNELSNQFNMIQMALASAERIFEILDLEEE--KDDPDAVELR-EVRGEIEFKNV 360
Query: 1015 FFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQD 1074
+F+Y + +LK ++ I+ G+ VALVG +G GK+TI+ LL RFYD +G + +D D
Sbjct: 361 WFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418
Query: 1075 IRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMK 1134
IR LRS I +V Q+ LF+ T++EN+ YG A + EIK+AA L ++ FI +
Sbjct: 419 IRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLP 478
Query: 1135 DGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM 1194
+GY+T + G LS GQ+Q +A+ RA L NP IL+LDEATS +D+ +E +Q A+ K+M
Sbjct: 479 EGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM 538
Query: 1195 MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
G+T +++AHRL+TI+ +D I V+++G +VE G H+EL + + G YY L Q
Sbjct: 539 EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDEL--IQKRGFYYELFTSQ 590
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 411 bits (1058), Expect = e-130
Identities = 178/598 (29%), Positives = 303/598 (50%), Gaps = 40/598 (6%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLR 66
L Y ++ + + L +++ I+ P D + +Y L
Sbjct: 28 LLGYL-RPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF----DLLPRYMLI 82
Query: 67 LLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVV 126
L + L +++G ++ R+R E + + R VGFFD G ++
Sbjct: 83 LGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGD-----II 137
Query: 127 STISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLT-LMFIVPGLL 185
S + ND ++I + I + + T ++ F ++ LSL L + L ++
Sbjct: 138 SRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLI---- 193
Query: 186 FGKLMMGVIMKMIESY--------GVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQK 237
++ Y G GI E+ +S + + + E + + +F +
Sbjct: 194 -----TQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNES 248
Query: 238 TMELGIKQGFIKGLLMGSMGMI-YVGWAFQAWVGSYLVTEKGEKGGSI--FVAGVSIIMG 294
++G K G+L M M+ +G+A + G +L + G+I F+
Sbjct: 249 LRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTR 308
Query: 295 GLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCY 354
L+ L N+ I A +A RIFE++D + DD L VRGEIEF++V+F Y
Sbjct: 309 PLNELSNQFNM--IQMALASAERIFEILDLEE--EKDDPDAVELREVRGEIEFKNVWFSY 364
Query: 355 PSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL 414
VL+ + + G+ V LVG +GSGK+T + LL RFYD G++L+DG IR++
Sbjct: 365 --DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKI 422
Query: 415 HLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYE 474
LRS +G+V Q+ +LF+T++ EN+ +G GA+ +++ AAK ++ FI LP+GYE
Sbjct: 423 KRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYE 482
Query: 475 TQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRT 534
T + G +S GQ+Q +AI RA + +PKIL+LDEATS +D ++E+ +Q A+ K+ +G+T
Sbjct: 483 TVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKT 542
Query: 535 TLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQ-QMASEND 591
++IIAHRL+TI+ A+LI+VL+ G++VE G H+EL+ + G YY++ Q + E +
Sbjct: 543 SIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK--RGFYYELFTSQYGLVVEKE 598
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 406 bits (1046), Expect = e-133
Identities = 110/263 (41%), Positives = 170/263 (64%), Gaps = 4/263 (1%)
Query: 327 AIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGK 386
+++ IEF DV F YP + + L+ +N +P+G + LVG +GSGK
Sbjct: 1 GLESFSLTSH-EKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGK 59
Query: 387 STTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKD 446
ST LL RFYD EG++ + G + + + +RS +G+V Q+ +LF +I NIL+GK
Sbjct: 60 STIAKLLYRFYD-AEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL 118
Query: 447 GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILL 506
A+ ++VI A K+A +DFI LP ++T VG G ++SGG++QRIAIAR L++DPKI++
Sbjct: 119 DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVI 178
Query: 507 LDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHN 566
DEATS+LD+++E + Q+A++ + K RT +IIAHRLSTI +A I++L GK+VE G+H
Sbjct: 179 FDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHK 238
Query: 567 ELMNRGEGGEYYQMVELQQMASE 589
+L+ GEY +M +Q ++
Sbjct: 239 DLLKL--NGEYAEMWNMQSGGND 259
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 405 bits (1043), Expect = e-132
Identities = 105/259 (40%), Positives = 163/259 (62%), Gaps = 3/259 (1%)
Query: 994 DSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTI 1053
+S +++ IE +V F+YP + + LK ++ I +G T ALVG +G GKSTI
Sbjct: 3 ESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTI 62
Query: 1054 IGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADAR 1113
LL RFYD +G + + +++ YN +RS I +V Q+ LF TI+ NI YGK DA
Sbjct: 63 AKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDAT 121
Query: 1114 ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDE 1173
+ E+ KA A ++FI + +DT G +G++LSGG++QRIA+AR +LK+P I++ DE
Sbjct: 122 DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDE 181
Query: 1174 ATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELV 1233
ATS+LDS +E L Q+A+E + RT +++AHRLSTI +++I ++ G++VE+G+H +L
Sbjct: 182 ATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDL- 240
Query: 1234 ALSRGGAYYSLIKPQGGSS 1252
L G Y + Q G +
Sbjct: 241 -LKLNGEYAEMWNMQSGGN 258
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 387 bits (997), Expect = e-125
Identities = 126/268 (47%), Positives = 171/268 (63%), Gaps = 6/268 (2%)
Query: 981 VFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTV 1040
+F +L +E+ D P ++ Q +GRIE +NV F+Y + L+ +S + G+T+
Sbjct: 28 MFDLLKEETEV-KDLPGAGPLRFQ-KGRIEFENVHFSY--ADGRETLQDVSFTVMPGQTL 83
Query: 1041 ALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGT 1100
ALVG SG GKSTI+ LL RFYD G + +D QDI LRSHI +V Q+ LF T
Sbjct: 84 ALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDT 143
Query: 1101 IRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALAR 1160
I +NI YG+ A E++ AA A H+ I +GY T GERG++LSGG+KQR+A+AR
Sbjct: 144 IADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIAR 203
Query: 1161 AILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKN 1220
ILK P I+LLDEATSALD+ +E +Q +L K+ RT +VVAHRLST+ +D I VIK+
Sbjct: 204 TILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKD 263
Query: 1221 GRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
G +VE+G H L LSRGG Y + + Q
Sbjct: 264 GCIVERGRHEAL--LSRGGVYADMWQLQ 289
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 383 bits (987), Expect = e-124
Identities = 120/285 (42%), Positives = 177/285 (62%), Gaps = 7/285 (2%)
Query: 308 ITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCY-PSRPDTLVLQGL 366
+ + +F+++ + D L + +G IEF +V+F Y R LQ +
Sbjct: 18 GSHMFIDMENMFDLLKEETEV-KDLPGAGPLRFQKGRIEFENVHFSYADGRE---TLQDV 73
Query: 367 NLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLV 426
+ V G+++ LVG SG+GKST + LL RFYD G + +DG I ++ LRS +G+V
Sbjct: 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVV 133
Query: 427 NQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSG 486
Q+ VLF +I +NI +G+ A D+V +AA+AA HD I P+GY TQVG+ G ++SG
Sbjct: 134 PQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSG 193
Query: 487 GQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR 546
G+KQR+AIAR +++ P I+LLDEATSALD +ER +Q ++ KV RTT+++AHRLST+
Sbjct: 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVV 253
Query: 547 TANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASEND 591
A+ I+V+K G +VE G H L++R GG Y M +LQQ E
Sbjct: 254 NADQILVIKDGCIVERGRHEALLSR--GGVYADMWQLQQGQEETS 296
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 346 bits (890), Expect = e-106
Identities = 150/542 (27%), Positives = 262/542 (48%), Gaps = 24/542 (4%)
Query: 58 DTVDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQ 117
V K + +L VA+ + + + ++ + +R + + V +
Sbjct: 60 SLVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKV--LSFSISNVNRF 117
Query: 118 GSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLS--TFFFCLLFSFILSWRLS---LAA 172
+S+ +++ ++ND +Q + + + + F ++ + ++ +LS +
Sbjct: 118 HTSS---LITRLTNDVTQLQNLV--MMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFL 172
Query: 173 LPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFS 232
+P ++ V K + K+ ES + + + +R V ++ E F
Sbjct: 173 IPPIVLLFV---WLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFR 229
Query: 233 NALQKTMELGIKQGFIKGLLMGSMGMI-YVGWAFQAWVGSYLVTEKGEKGGSI--FVAGV 289
A + I + + I +G W G LV + GSI + +
Sbjct: 230 KANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYL 289
Query: 290 SIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRD 349
IM L ++G + L I A +A R+ E+++ PAI + AL V G + F +
Sbjct: 290 MQIMFSLMMIGNI--LNFIVRASASAKRVLEVLNEKPAI-EEADNALALPNVEGSVSFEN 346
Query: 350 VYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGY 409
V F Y VL G+N V G V ++G +GSGKST + L+ R DP G V +D
Sbjct: 347 VEFRYFE-NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL 405
Query: 410 KIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKL 469
+R + LK LR + V QE VLF+ +I EN+ +G++ A+ D+++ AAK A HDFI L
Sbjct: 406 DVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISL 465
Query: 470 PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV 529
P+GY+++V + G SGGQKQR++IARAL++ PK+L+LD+ TS++D +E+ + + + +
Sbjct: 466 PEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY 525
Query: 530 SKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASE 589
+KG TT II ++ T A+ I+VL GKV G+H EL+ + Y ++ E Q
Sbjct: 526 TKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCK--PYREIYESQFGNGV 583
Query: 590 ND 591
+
Sbjct: 584 MN 585
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 333 bits (856), Expect = e-101
Identities = 135/513 (26%), Positives = 254/513 (49%), Gaps = 27/513 (5%)
Query: 733 LGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLA 792
L VA++ + + S + +R L K+++F I ++ ++++ RL
Sbjct: 70 LIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNR--FHTSSLITRLT 127
Query: 793 TEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLM 852
+ +++LV + ++V+A V ++ + ++ +L+ V+I + P ++ + L
Sbjct: 128 NDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFV---WLT 184
Query: 853 KSMAGKARKAQK---EGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSW 909
K RK Q+ E +++ E ++ R + AF ++ F++ + +
Sbjct: 185 KKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFS 244
Query: 910 YSGIGLFSSQFFNTASTALAYWYGGRLLTQELITP-------EHLFQAFLILLFTAYVIA 962
L F W+GG L+ + +L Q L+ ++
Sbjct: 245 LIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNIL- 303
Query: 963 EAGSMTSDISKGSNAVRSVFAILDRRSEI-DPDSPQGRDIKRQMRGRIELKNVFFAYPTR 1021
I + S + + V +L+ + I + D+ + G + +NV F Y
Sbjct: 304 ----NF--IVRASASAKRVLEVLNEKPAIEEADNALALP---NVEGSVSFENVEFRYFE- 353
Query: 1022 PDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLK 1081
+L G++ ++ G VA++G++G GKST++ L+ R DP +G V +DE D+R LK
Sbjct: 354 NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLK 413
Query: 1082 QLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYC 1141
LR HI+ V QE LF+GTI+EN+ +G+ DA + EI +AA +A H+FI + +GYD+
Sbjct: 414 DLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRV 473
Query: 1142 GERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVV 1201
G SGGQKQR+++ARA++K P +L+LD+ TS++D ++E + + L++ G T +
Sbjct: 474 ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFI 533
Query: 1202 VAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVA 1234
+ ++ T +D I V+ G+V G+H EL+
Sbjct: 534 ITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 5e-62
Identities = 64/249 (25%), Positives = 114/249 (45%), Gaps = 6/249 (2%)
Query: 1006 RGRIELKNVFFAYPTRPDQ-MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
G++ +K++ Y IL+ +S I G+ V L+G++G GKST++ R +
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT- 73
Query: 1065 KGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLA 1124
+G + +D + L+Q R ++ Q+ +F+GT R+N+ A + EI K A
Sbjct: 74 EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVADEV 132
Query: 1125 NAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSES 1184
I D + G LS G KQ + LAR++L ILLLDE ++ LD V+
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 1185 LVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSL 1244
+++ L++ T ++ R+ + + D VI+ +V + S EL + +
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYH-YPADRFVAG 251
Query: 1245 IKPQGGSSP 1253
+
Sbjct: 252 FIGSPKMNF 260
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 1e-61
Identities = 59/245 (24%), Positives = 114/245 (46%), Gaps = 12/245 (4%)
Query: 342 RGEIEFRDVYFCYPSRPDT-LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV 400
G++ +D+ Y +L+ ++ + G+ VGL+G +GSGKST ++ R +
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT- 73
Query: 401 EGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKD--GASMDDVI-SAA 457
EGE+ +DG + L+ R G++ Q+ +F+ + +N+ D A D I A
Sbjct: 74 EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNL----DPNAAHSDQEIWKVA 129
Query: 458 KAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ 517
I + P + + G +S G KQ + +AR+++ KILLLDE ++ LD
Sbjct: 130 DEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189
Query: 518 SERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEY 577
+ +I++ + + T ++ R+ + + +V++ KV + S EL + +
Sbjct: 190 TYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY-PADRF 248
Query: 578 YQMVE 582
Sbjct: 249 VAGFI 253
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 1e-48
Identities = 64/244 (26%), Positives = 120/244 (49%), Gaps = 22/244 (9%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
+ ++NV + +LK ++ KIE G+ +A+ G +G GK++++ ++ +P
Sbjct: 3 TTTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61
Query: 1065 KGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKA--DARESEIKKAAV 1122
+G + + I+ SQ + GTI+ENI +G + + R + KA
Sbjct: 62 EGKI-------------KHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQ 108
Query: 1123 LANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS-V 1181
L E IS + + GE G+ LSGGQ+ RI+LARA+ K+ + LLD LD
Sbjct: 109 L---EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165
Query: 1182 SESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAY 1241
+ + + + K+M +T ++V ++ ++K+D I ++ G G+ +EL + +
Sbjct: 166 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL--QNLQPDF 223
Query: 1242 YSLI 1245
S +
Sbjct: 224 SSKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 3e-46
Identities = 57/242 (23%), Positives = 114/242 (47%), Gaps = 22/242 (9%)
Query: 342 RGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVE 401
E+ +V + T VL+ +N ++ G+ + + G +G+GK++ + ++ +P E
Sbjct: 4 TTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 402 GEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGK--DGASMDDVISAAKA 459
G++ G ++ +Q + +I ENI+FG D VI A
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKAC-- 107
Query: 460 ANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE 519
D +K + +G+ G +SGGQ+ RI++ARA+ +D + LLD LD +E
Sbjct: 108 QLEEDI-SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166
Query: 520 R-IVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYY 578
+ I + + K+ +T +++ ++ ++ A+ I++L G G+ +EL N ++
Sbjct: 167 KEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL--QPDFS 224
Query: 579 QM 580
Sbjct: 225 SK 226
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 2e-46
Identities = 77/251 (30%), Positives = 128/251 (50%), Gaps = 24/251 (9%)
Query: 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
I ++N F + R D L G++ I G VA+VGQ GCGKS+++ L D ++G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 1067 SVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKA--DARESEIKKAAVLA 1124
V ++ +A V Q+ + ++RENI +G + + +A L
Sbjct: 61 HV-------------AIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALL 107
Query: 1125 NAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS-VSE 1183
+ + G T GE+GV LSGGQKQR++LARA+ N I L D+ SA+D+ V +
Sbjct: 108 ---PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164
Query: 1184 SLVQEAL--EKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAY 1241
+ + + + M+ +T ++V H +S + + D I V+ G++ E GS+ EL L+R GA+
Sbjct: 165 HIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQEL--LARDGAF 222
Query: 1242 YSLIKPQGGSS 1252
++
Sbjct: 223 AEFLRTYASHH 233
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 6e-45
Identities = 77/245 (31%), Positives = 122/245 (49%), Gaps = 24/245 (9%)
Query: 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402
I R+ F + +R D L G+ +P G V +VG G GKS+ ++ L D VEG
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGK--DGASMDDVISAAKAA 460
V + G + V Q+ + S+ ENILFG + VI A A
Sbjct: 61 HVAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQAC--A 105
Query: 461 NAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ-SE 519
D LP G T++G+ G +SGGQKQR+++ARA+ + I L D+ SA+DA +
Sbjct: 106 LLPDL-EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164
Query: 520 RIVQEAI--DKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEY 577
I + I + K +T +++ H +S + ++I+V+ GK+ E GS+ EL+ R G +
Sbjct: 165 HIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR--DGAF 222
Query: 578 YQMVE 582
+ +
Sbjct: 223 AEFLR 227
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 4e-45
Identities = 63/271 (23%), Positives = 123/271 (45%), Gaps = 25/271 (9%)
Query: 979 RSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGK 1038
+ E+ + Q + ++ ++ F+ + +LK ++ KIE G+
Sbjct: 9 NVTAFWEEGFGELFEKAKQNNNNRKT---SNGDDSLSFSNFSLLGTPVLKDINFKIERGQ 65
Query: 1039 TVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFA 1098
+A+ G +G GK++++ ++ +P +G + + I+ SQ +
Sbjct: 66 LLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSGRISFCSQNSWIMP 112
Query: 1099 GTIRENIAYGKADAR--ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRI 1156
GTI+ENI D S IK + + IS + + GE G+ LSGGQ+ RI
Sbjct: 113 GTIKENIIGVSYDEYRYRSVIKACQLEED----ISKFAEKDNIVLGEGGITLSGGQRARI 168
Query: 1157 ALARAILKNPSILLLDEATSALDS-VSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTI 1215
+LARA+ K+ + LLD LD + + + + K+M +T ++V ++ ++K+D I
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 228
Query: 1216 AVIKNGRVVEQGSHNELVALSRGGAYYSLIK 1246
++ G G+ +EL + + S +
Sbjct: 229 LILHEGSSYFYGTFSEL--QNLRPDFSSKLM 257
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 3e-43
Identities = 63/306 (20%), Positives = 132/306 (43%), Gaps = 27/306 (8%)
Query: 309 TEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNL 368
+ +V + + + +K + + + + F S T VL+ +N
Sbjct: 1 STTEVVMENVTAFWEEGFG-ELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINF 59
Query: 369 RVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQ 428
++ G+ + + G +G+GK++ + ++ +P EG++ G ++ +Q
Sbjct: 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQ 106
Query: 429 EPVLFATSITENILFGK-DGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGG 487
+ +I ENI+ D VI A D +K + +G+ G +SGG
Sbjct: 107 NSWIMPGTIKENIIGVSYDEYRYRSVIKAC--QLEEDI-SKFAEKDNIVLGEGGITLSGG 163
Query: 488 QKQRIAIARALIRDPKILLLDEATSALDAQSER-IVQEAIDKVSKGRTTLIIAHRLSTIR 546
Q+ RI++ARA+ +D + LLD LD +E+ I + + K+ +T +++ ++ ++
Sbjct: 164 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 223
Query: 547 TANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMV------ELQQMASENDTSNDTFNDF 600
A+ I++L G G+ +EL N ++ + + N +T + F
Sbjct: 224 KADKILILHEGSSYFYGTFSELQNL--RPDFSSKLMGCDSFDQFSAERRNSILTETLHRF 281
Query: 601 SHQMDA 606
S + DA
Sbjct: 282 SLEGDA 287
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 6e-44
Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 26/242 (10%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
++ ++ + Y T L+G+N+ + G+ ++GG+G GKST P G +
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 405 LLDGYKI--RRLHLKWLRSQMGLVNQEPV--LFATSITENILFG-----KDGASMDD-VI 454
L D I R + LR +G+V Q+P LF+ S+ +++ FG + V
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 455 SAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSAL 514
+A K K +S GQK+R+AIA L+ +PK+L+LDE T+ L
Sbjct: 126 NALKRTGIEHLKDKPT-----------HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 515 DAQSERIVQEAIDKVSK--GRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNR 571
D + + + ++ K G T +I H + + + + V+K G+V+ G+ E+
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
Query: 572 GE 573
E
Sbjct: 235 KE 236
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 5e-39
Identities = 65/234 (27%), Positives = 121/234 (51%), Gaps = 20/234 (8%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
++++ + + Y LKG+++ I+ G+ A++G +G GKST+ P G +
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 1069 FMDEQDI--RNYNLKQLRSHIALVSQEPT--LFAGTIRENIAYG--KADARESEIKKAAV 1122
D + I + +LR I +V Q+P LF+ ++ +++++G E EI+K
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRV- 124
Query: 1123 LANAHEFISGMKDGYDTYCGERGV-QLSGGQKQRIALARAILKNPSILLLDEATSALDSV 1181
NA + G++ D + LS GQK+R+A+A ++ P +L+LDE T+ LD +
Sbjct: 125 -DNALKRT-GIEHLKD-----KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPM 177
Query: 1182 SESLVQEALEKMM--MGRTCVVVAHRLSTI-QKSDTIAVIKNGRVVEQGSHNEL 1232
S + + L +M +G T ++ H + + D + V+K GRV+ QG+ E+
Sbjct: 178 GVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 1e-42
Identities = 44/234 (18%), Positives = 99/234 (42%), Gaps = 32/234 (13%)
Query: 1009 IELKNVFFAYPTRP-DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
I+LKNV + ++ L+ ++L++ G+ V ++G +G GK+T++ + P G+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPTLFAG--TIRENIAYG----KADARESEIKKAA 1121
+F++ ++R +R++I + P + T+ + + D +
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLD--RDLFLEML 112
Query: 1122 VLANAHEFISGMKDGYDTYCGERGV-QLSGGQKQRIALARAILKNPSILLLDEATSALDS 1180
+ + R + +LS GQ + + A+ P I+ LDE +D+
Sbjct: 113 KAL-------KLGEEI----LRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDA 161
Query: 1181 VSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQ-GSHNEL 1232
++ +++ G+ ++V H L + + A G ++ S +EL
Sbjct: 162 ARRHVISRYIKE--YGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSEL 213
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 2e-39
Identities = 46/234 (19%), Positives = 97/234 (41%), Gaps = 26/234 (11%)
Query: 345 IEFRDVYFCYPSRP-DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403
I+ ++V + + L+ +NL V G+ V ++G +GSGK+T + + P G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 404 VLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSIT--ENILFGKD--GASMDDVISAAKA 459
+ ++G ++R++ R+ + P + +T + + ++ G D + K
Sbjct: 60 IFINGMEVRKI-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLK- 113
Query: 460 ANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE 519
KL + + +++S GQ + + AL P+I+ LDE +DA
Sbjct: 114 ------ALKLGEEIL---RRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARR 164
Query: 520 RIVQEAIDKVSKGRTTLIIAHRLST-IRTANLIMVLKAGKVVE-SGSHNELMNR 571
++ I + G+ +++ H L G ++ S +EL+
Sbjct: 165 HVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 2e-40
Identities = 62/242 (25%), Positives = 116/242 (47%), Gaps = 27/242 (11%)
Query: 345 IEFRDVYFCYPSRP--DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402
IE +V + + L+ ++L + G+ + + G +GSGKST + ++ +P G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPV--LFATSITENILFGKD--GASMDDVISAAK 458
+VL DG + +R +G+ Q P FA + + + F D V K
Sbjct: 63 DVLYDGERK---KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKK 119
Query: 459 AA-----NAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSA 513
A + F ++P F +SGG+K+R+AIA ++ +P IL+LDE
Sbjct: 120 AMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168
Query: 514 LDAQSERIVQEAIDKV-SKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNR 571
LD + + + ++K + G+T ++I+H + T+ + ++VL+ GK V G+ E + +
Sbjct: 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
Query: 572 GE 573
+
Sbjct: 229 YD 230
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 1e-37
Identities = 61/232 (26%), Positives = 114/232 (49%), Gaps = 17/232 (7%)
Query: 1009 IELKNVFFAYP--TRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
IE+ NV + T ++ L+ +SL I G+ + + G +G GKST++ ++ +P G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1067 SVFMDEQDIRNYNLKQLRSHIALVSQEPT--LFAGTIRENIAYG--KADARESEIKKAAV 1122
V D + ++R +I + Q P FA + + +A+ +
Sbjct: 63 DVLYDGERK---KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLV-- 117
Query: 1123 LANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVS 1182
A EF+ G+ +D++ LSGG+K+R+A+A I+ P IL+LDE LD
Sbjct: 118 -KKAMEFV-GLD--FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 1183 ESLVQEALEKM-MMGRTCVVVAHRLSTI-QKSDTIAVIKNGRVVEQGSHNEL 1232
++ + +EK +G+T ++++H + T+ D + V++ G+ V G+ E
Sbjct: 174 KTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 3e-38
Identities = 56/237 (23%), Positives = 104/237 (43%), Gaps = 21/237 (8%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
I+L + + ILK +S +I G L G +G GK+T++ +L + G+V
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 1069 FMDEQDI--RNYNLKQLRSHIALVSQEPTL---FAGTIRENIAYGKADA--RESEIKKAA 1121
+ + Y+ + +R HI VS + + + G + +I
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 1122 VLANAHEFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALD 1179
AH+ + GM Y G LS G+KQR+ +ARA++ P +L+LDE + LD
Sbjct: 139 -RNEAHQLLKLVGMSAKAQQYIG----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLD 193
Query: 1180 SVSESLVQEALEKMM---MGRTCVVVAHRLSTI-QKSDTIAVIKNGRVVEQGSHNEL 1232
++ + L+ + + V H + I I ++K+G+ ++QG+ ++
Sbjct: 194 FIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 9e-38
Identities = 52/252 (20%), Positives = 111/252 (44%), Gaps = 16/252 (6%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
I+ + + +L+ ++ ++ G L G +G+GK+T + +L + G V
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 405 LLDGYKIRRL--HLKWLRSQMGLVNQE---PVLFATSITENILFGKDGAS-MDDVISAAK 458
L G ++ + +R +G V+ + + ++ G + + I
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 459 AANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS 518
AH + + G + Q +S G+KQR+ IARAL+ P++L+LDE + LD +
Sbjct: 139 RNEAHQLLKLV--GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIA 196
Query: 519 ERIVQEAIDKVS---KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNRGEG 574
+ +D +S + + H + I + I++LK G+ ++ G+ +++
Sbjct: 197 RESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENM 256
Query: 575 GEYYQM-VELQQ 585
++Q V +Q+
Sbjct: 257 SRFFQKNVAVQR 268
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 1e-37
Identities = 77/233 (33%), Positives = 124/233 (53%), Gaps = 23/233 (9%)
Query: 1009 IELKNVFFAYPTRPDQMI-LKGLSLKIEAGKTVALVGQSGCGKSTI---IGLLERFYDPL 1064
I+L N+ + + L +SL + AG+ ++G SG GKST+ + LLER P
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PT 81
Query: 1065 KGSVFMDEQDIRNYNLKQL---RSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKA 1120
+GSV +D Q++ + +L R I ++ Q L + T+ N+A K
Sbjct: 82 EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP---LELDNTPKD 138
Query: 1121 AVLANAHEFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSAL 1178
V E +S G+ D +D+Y LSGGQKQR+A+ARA+ NP +LL D+ATSAL
Sbjct: 139 EVKRRVTELLSLVGLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSAL 194
Query: 1179 DSVSESLVQEALEKM--MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGS 1228
D + + E L+ + +G T +++ H + +++ D +AVI NG ++EQ +
Sbjct: 195 DPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 3e-35
Identities = 70/231 (30%), Positives = 121/231 (52%), Gaps = 19/231 (8%)
Query: 345 IEFRDVYFCYPSR-PDTLVLQGLNLRVPAGKSVGLVGGSGSGKST---TIALLQRFYDPV 400
I+ ++ + L ++L VPAG+ G++G SG+GKST + LL+R P
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PT 81
Query: 401 EGEVLLDGYKIRRL---HLKWLRSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISA 456
EG VL+DG ++ L L R Q+G++ Q L ++ ++ N+ + +
Sbjct: 82 EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVK 141
Query: 457 AKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDA 516
+ + L D +++ L SGGQKQR+AIARAL +PK+LL D+ATSALD
Sbjct: 142 RRVTELLSLV-GLGDKHDSYPSNL----SGGQKQRVAIARALASNPKVLLCDQATSALDP 196
Query: 517 QSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGS 564
+ R + E + +++ G T L+I H + ++ + + V+ G+++E +
Sbjct: 197 ATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 3e-35
Identities = 67/238 (28%), Positives = 114/238 (47%), Gaps = 34/238 (14%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST---IIGLLERFY 1061
M + +N+ ILKG+SL ++ G+ V+++G SG GKST I+GLL+
Sbjct: 1 MAEILRAENIKKVIRGYE---ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA-- 55
Query: 1062 DPLKGSVFMDEQDIRNYNLKQL----RSHIALVSQE----PTLFAGTIRENIA----YGK 1109
P +G VF++ +++ N K+L + V Q P L T EN+
Sbjct: 56 -PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPEL---TALENVIVPMLKMG 111
Query: 1110 ADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSIL 1169
+E++ + +L+ G+ D + +LSGG++QR+A+ARA+ P +L
Sbjct: 112 KPKKEAKERGEYLLSEL-----GLGDKLS----RKPYELSGGEQQRVAIARALANEPILL 162
Query: 1170 LLDEATSALDSVSESLVQEALEKM-MMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQ 1226
DE T LDS + V + K+ G + V+V H + + +K+G+VV +
Sbjct: 163 FADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 28/230 (12%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKST---TIALLQRFYDPVE 401
+ ++ +L+G++L V G+ V ++G SGSGKST + LL P E
Sbjct: 5 LRAENIKKVIRGYE---ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTE 58
Query: 402 GEVLLDGYKIRRL---HLKWLRSQM-GLVNQEPVLFA-TSITENI----LFGKDGASMDD 452
G+V L+G ++ L LR++ G V Q L + EN+ L G +
Sbjct: 59 GKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM--GKPKKE 116
Query: 453 VISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATS 512
+ +++L G ++ + +++SGG++QR+AIARAL +P +L DE T
Sbjct: 117 AKERGEYL-----LSEL--GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTG 169
Query: 513 ALDAQSERIVQEAIDKV-SKGRTTLIIAHRLSTIRTANLIMVLKAGKVVE 561
LD+ + + V + K+ G + +++ H + + +K GKVV
Sbjct: 170 NLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 4e-34
Identities = 74/238 (31%), Positives = 120/238 (50%), Gaps = 35/238 (14%)
Query: 1009 IELKNVFFAYPTRPDQM-ILKGLSLKIEAGKTVALVGQSGCGKST---IIGLLERFYDPL 1064
++LKNV Y + + LK ++L I+ G+ V+++G SG GKST IIG L++ P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 1065 KGSVFMDEQDIRNYNLKQL----RSHIALVSQE----PTLFAGTIRENIA-------YGK 1109
+G V++D + + +L R I V Q+ P L T EN+ G
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGA 115
Query: 1110 ADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSIL 1169
E + L A +++ + + + QLSGGQ+QR+A+ARA+ NP I+
Sbjct: 116 MSGEERRKRALECLKMA-----ELEERFANH---KPNQLSGGQQQRVAIARALANNPPII 167
Query: 1170 LLDEATSALDSVSESLVQEALEKM--MMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVE 1225
L D+ T ALDS + + + L+K+ G+T VVV H ++ + + I +K+G V
Sbjct: 168 LADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-27
Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 35/238 (14%)
Query: 345 IEFRDVYFCYPS-RPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTT---IALLQRFYDPV 400
++ ++V Y L+ +NL + G+ V ++G SGSGKST I L + P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 401 EGEVLLDGYKIRRL---HLKWLRSQM-GLVNQEPVLFA-TSITEN-----ILFGKDGASM 450
EGEV +D K L L +R G V Q+ L + EN I + S
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118
Query: 451 DDVISAAKAAN-----AHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKIL 505
++ A F P+ Q+SGGQ+QR+AIARAL +P I+
Sbjct: 119 EERRKRALECLKMAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPII 167
Query: 506 LLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKVVE 561
L D+ T ALD+++ + + + K+++ G+T +++ H ++ R I+ LK G+V
Sbjct: 168 LADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 3e-33
Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 32/236 (13%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
M ++L++V + L LS ++ AG+ + LVG +G GKST++ +
Sbjct: 1 MSIVMQLQDV-------AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG 52
Query: 1065 KGSVFMDEQDIRNYNLKQLRSHIALVSQEPTL-FAGTIRENIAYGKAD-ARESEIKKAAV 1122
KGS+ Q + ++ +L H A +SQ+ T FA + + + D R + A
Sbjct: 53 KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAG 112
Query: 1123 LANAHEFISGMKDGYDTYCGERGV-QLSGGQKQRIALARAIL-------KNPSILLLDEA 1174
+ R QLSGG+ QR+ LA +L +LLLDE
Sbjct: 113 ALALDDK------------LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEP 160
Query: 1175 TSALDSVSESLVQEALEKM-MMGRTCVVVAHRLS-TIQKSDTIAVIKNGRVVEQGS 1228
++LD +S + + L + G V+ +H L+ T++ + ++K G+++ G
Sbjct: 161 MNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 21/221 (9%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW 418
++ L L+ V AG+ + LVG +G+GKST +A + +G + G +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATK 70
Query: 419 LRSQMGLVNQEPVL-FATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQV 477
L ++Q+ FAT + + + + ++++ A L D
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA------LALDDKLGRST 124
Query: 478 GQLGFQMSGGQKQRIAIARAL-------IRDPKILLLDEATSALD-AQSERIVQEAIDKV 529
QL SGG+ QR+ +A + ++LLLDE ++LD AQ + +
Sbjct: 125 NQL----SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALS 180
Query: 530 SKGRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELM 569
+G ++ +H L+ T+R A+ +LK GK++ SG E++
Sbjct: 181 QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 3e-32
Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 30/228 (13%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
M + ++N+ F Y + + L+ + G +A++GQ+GCGKST++ LL + P+
Sbjct: 1 MNKALSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI 58
Query: 1065 KGSVFMDEQDIRNYNLKQLRSHIALVSQEPTL-FAGTIRENIAYG-----KADARESEIK 1118
+G + ++ I V Q + FA ++ + + G A+
Sbjct: 59 QGKI-------------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD 105
Query: 1119 KAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSAL 1178
+ A +++ + LSGGQ+Q I +ARAI ++LLDE TSAL
Sbjct: 106 YQVAMQ-ALDYL-NLTHLAKREFTS----LSGGQRQLILIARAIASECKLILLDEPTSAL 159
Query: 1179 DSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRV 1223
D ++ +V L + T V H+ + + ++ ++
Sbjct: 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 1e-28
Identities = 58/238 (24%), Positives = 106/238 (44%), Gaps = 35/238 (14%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+ ++ F Y + + Q LN + G + ++G +G GKST + LL + P++G++
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVL-FATSITENILFGK-------DGASMDDVISA 456
+ +G V Q FA S+ + +L G+ D A
Sbjct: 63 EVYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 457 AKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDA 516
+A + + +T L + L SGGQ+Q I IARA+ + K++LLDE TSALD
Sbjct: 110 MQALDYLN-LTHLAK---REFTSL----SGGQRQLILIARAIASECKLILLDEPTSALDL 161
Query: 517 QSERIVQEAIDKVSK--GRTTLIIAHRLST-IRTANLIMVLKAGKVVESGSHNELMNR 571
++ IV + +++ T + H+ + + AN ++L + + G ++
Sbjct: 162 ANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLN-KQNFKFGETRNILTS 218
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 5e-32
Identities = 48/245 (19%), Positives = 87/245 (35%), Gaps = 32/245 (13%)
Query: 987 RRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQS 1046
R + + + +L + + + ++G++
Sbjct: 330 RTEALQFRIADATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSEILVMMGEN 387
Query: 1047 GCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPT--LFAGTIREN 1104
G GK+T+I LL P +G QDI N+ IA LF IR
Sbjct: 388 GTGKTTLIKLLAGALKPDEG------QDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQ 441
Query: 1105 IAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQ-LSGGQKQRIALARAIL 1163
++++ K L I + D + VQ LSGG+ QR+A+ A+
Sbjct: 442 F---LNPQFQTDVVKP--LR-----IDDIID--------QEVQHLSGGELQRVAIVLALG 483
Query: 1164 KNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKN 1220
I L+DE ++ LDS + + + + ++ +T +V H +D + V +
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEG 543
Query: 1221 GRVVE 1225
Sbjct: 544 IPSKN 548
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 7e-31
Identities = 53/241 (21%), Positives = 89/241 (36%), Gaps = 36/241 (14%)
Query: 344 EIEFRDVYFCYPS---RPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV 400
+ + F YPS VL + + ++G +G+GK+T I LL P
Sbjct: 346 QNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD 405
Query: 401 EGEVLLDGYKIRRLHLKWLRSQMGLVNQEPV--LFATSITENILFGKDGASMDDVISAAK 458
EG+ I +L++ ++ V LF I L + DV+ K
Sbjct: 406 EGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFL---NPQFQTDVV---K 453
Query: 459 AANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS 518
D I + +SGG+ QR+AI AL I L+DE ++ LD++
Sbjct: 454 PLRIDDIIDQEV-----------QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ 502
Query: 519 ERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHN-----ELMN 570
I + I + +T I+ H A+ ++V + + + N
Sbjct: 503 RIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGCN 562
Query: 571 R 571
R
Sbjct: 563 R 563
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 4e-28
Identities = 46/234 (19%), Positives = 84/234 (35%), Gaps = 27/234 (11%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLE----RF 1060
+V Y G+ + LVG +G GKST + G + RF
Sbjct: 78 NLEAHVTHRYS---ANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134
Query: 1061 YDPLKGSVFMDE---QDIRNYNLKQLRSHIALVSQEPT--LFAGTIRENIAY-GKADARE 1114
DP + + +++NY K L I + + I+ + G+
Sbjct: 135 DDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR 194
Query: 1115 SEIKKAAVLANAHEFISGMKDGYDTYCGERGV-QLSGGQKQRIALARAILKNPSILLLDE 1173
E V +++ R + +LSGG+ QR A+ + ++ + + DE
Sbjct: 195 MEKSPEDVKRYIKIL--QLENVLK-----RDIEKLSGGELQRFAIGMSCVQEADVYMFDE 247
Query: 1174 ATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTI-QKSDTIAVIKNGRVVE 1225
+S LD + + ++ + + V H LS + SD + +I V
Sbjct: 248 PSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 3e-27
Identities = 45/239 (18%), Positives = 90/239 (37%), Gaps = 35/239 (14%)
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALL--------QR 395
V Y ++ L L G+ +GLVG +G GKST + +L R
Sbjct: 77 TNLEAHVTHRYS--ANSFKLHRLPT-PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
Query: 396 FYDPVEGEVLLDGYKIRRLH---LKWLRSQMGLVNQEPV--LFATSITENILFG------ 444
F DP E + ++ ++ L K L + + + +I +
Sbjct: 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL 193
Query: 445 KDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKI 504
+ S +DV K + + + ++SGG+ QR AI + +++ +
Sbjct: 194 RMEKSPEDVKRYIKILQLENVLKRDI-----------EKLSGGELQRFAIGMSCVQEADV 242
Query: 505 LLLDEATSALDAQSERIVQEAIDK-VSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVE 561
+ DE +S LD + + I ++ + + + H LS + ++ + ++ V
Sbjct: 243 YMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 1e-31
Identities = 67/237 (28%), Positives = 116/237 (48%), Gaps = 31/237 (13%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IE V YP ++G+S +I G+ V L+G SG GK+TI+ L+ P KG V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYG----KADARESEIKKAAVL 1123
++ + + + L + ++ LV Q LF T+ +N+++G + E + + +L
Sbjct: 73 WIGGKRVTD--LPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 1124 ANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS-VS 1182
+ + + +LSGGQ+QR+ALARA+ P +LL DE +A+D+ +
Sbjct: 131 RFMR--LESYANRFPH-------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIR 181
Query: 1183 ESLVQEALEKM--MMGRTCVVVAHRLSTIQK-----SDTIAVIKNGRVVEQGSHNEL 1232
L + + ++ MG T V V H Q+ +D + V+ G V + G+ E+
Sbjct: 182 REL-RTFVRQVHDEMGVTSVFVTHD----QEEALEVADRVLVLHEGNVEQFGTPEEV 233
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 1e-27
Identities = 57/176 (32%), Positives = 97/176 (55%), Gaps = 14/176 (7%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IEF V YP ++G++ ++ G+ VGL+G SGSGK+T + L+ P +G+V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFA-TSITENILFG--KDGASMDDVISAAKAAN 461
+ G ++ L + + +GLV Q LF ++ +N+ FG + D++ A+
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEM--DARVRE 128
Query: 462 AHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ 517
F+ +L + Y + ++SGGQ+QR+A+ARAL P++LL DE +A+D Q
Sbjct: 129 LLRFM-RL-ESYA---NRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 2e-31
Identities = 70/213 (32%), Positives = 107/213 (50%), Gaps = 19/213 (8%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDI--RNYNLKQL 1083
+LKG+++ I G+ V ++G SG GKST + L D +G + +D ++ ++ NL ++
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 1084 RSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFIS--GMKDGYDTY 1140
R + +V Q LF T+ NI R+ + A A E + G+KD Y
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRK--WPREKAEAKAMELLDKVGLKDKAHAY 156
Query: 1141 CGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM----G 1196
LSGGQ QR+A+ARA+ P I+L DE TSALD +V E L M G
Sbjct: 157 PD----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP---EMVGEVLSVMKQLANEG 209
Query: 1197 RTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGS 1228
T VVV H + ++ D + + G ++E+G
Sbjct: 210 MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGK 242
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 8e-28
Identities = 73/220 (33%), Positives = 111/220 (50%), Gaps = 33/220 (15%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKI--RRLHLKWL 419
VL+G+N+ + G+ V ++G SGSGKST + L D EGE+++DG + + +L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 420 RSQMGLVNQEPVLFA-TSITENILFG-----KDGASMDDVISAAKA-ANAHDFITK--LP 470
R ++G+V Q LF ++ NI K KA A A + + K L
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRK--------WPREKAEAKAMELLDKVGLK 150
Query: 471 DGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS 530
D L SGGQ QR+AIARAL +PKI+L DE TSALD + +V E + V
Sbjct: 151 DKAHAYPDSL----SGGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLS-VM 202
Query: 531 K-----GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGS 564
K G T +++ H + R + ++ + G ++E G
Sbjct: 203 KQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGK 242
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 3e-31
Identities = 70/228 (30%), Positives = 112/228 (49%), Gaps = 37/228 (16%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTI---IGLLERFYDPLKGSVFMDEQDIR------ 1076
+LKG+SL+ AG ++++G SG GKST I LE P +G++ ++ Q+I
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE---KPSEGAIIVNGQNINLVRDKD 77
Query: 1077 -------NYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHE 1128
L+ LR+ + +V Q L++ T+ EN+ + K A +
Sbjct: 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG--LSKHDARERALK 135
Query: 1129 FIS--GMKDGYD-TYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL 1185
+++ G+ + Y LSGGQ+QR+++ARA+ P +LL DE TSALD E L
Sbjct: 136 YLAKVGIDERAQGKYPV----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALD--PE-L 188
Query: 1186 VQEALEKMMM----GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGS 1228
V E L M G+T VVV H + + S + + G++ E+G
Sbjct: 189 VGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 9e-27
Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 47/239 (19%)
Query: 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL------- 414
VL+G++L+ AG + ++G SGSGKST + + P EG ++++G I +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 415 ------HLKWLRSQMGLVNQEPVLFA-TSITENILFGK---DGASMDDVISAAKAANAHD 464
L+ LR+++ +V Q L++ ++ EN++ G S D A
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALK----- 135
Query: 465 FITKLPDGYETQVGQLGF-------QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ 517
Y +VG +SGGQ+QR++IARAL +P +LL DE TSALD +
Sbjct: 136 --------YLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187
Query: 518 SERIVQEAIDKVSK-----GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMN 570
+V E + + + G+T +++ H + R ++ ++ L GK+ E G ++
Sbjct: 188 ---LVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG 242
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 4e-31
Identities = 53/227 (23%), Positives = 107/227 (47%), Gaps = 21/227 (9%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW 418
+L+G++ + G+ GL+G +G+GK+TT+ ++ P G V + G +
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHE 85
Query: 419 LRSQMGLVNQEPVLFAT-SITENILF-----GKDGASMDDVISAA-KAANAHDFITKLPD 471
+R + + +E + E + F + +++++ A + A + I
Sbjct: 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS 145
Query: 472 GYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK 531
Y S G +++ IARAL+ +P++ +LDE TS LD + R V++ + + S+
Sbjct: 146 TY-----------SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194
Query: 532 -GRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNRGEGGE 576
G T L+ +H + + + I ++ G +VE+G+ EL R +
Sbjct: 195 EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 241
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 5e-29
Identities = 58/240 (24%), Positives = 113/240 (47%), Gaps = 24/240 (10%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+ +K++ + ILKG+S +IE G+ L+G +G GK+T + ++ P G V
Sbjct: 16 VVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIA-----YG-KADARESEIKKAA 1121
+ +++ ++R I+ + +E + E + Y + E +++A
Sbjct: 73 TVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 131
Query: 1122 VLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSV 1181
+A G+ + S G +++ +ARA++ NP + +LDE TS LD +
Sbjct: 132 EIA-------GLGEKIKDRVST----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 180
Query: 1182 SESLVQEALEKM-MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVALSRGG 1239
+ V++ L++ G T +V +H + ++ D IA+I NG +VE G+ EL +
Sbjct: 181 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQ 240
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 5e-31
Identities = 58/260 (22%), Positives = 106/260 (40%), Gaps = 35/260 (13%)
Query: 985 LDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVG 1044
+ R + G ++ + + + Y + L+ +I+ G+ + +VG
Sbjct: 264 VRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVG 319
Query: 1045 QSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTL---FAGTI 1101
+G GK+T + +L +P +G + D + + + + GT+
Sbjct: 320 PNGIGKTTFVKMLAGVEEPTEGKIEWDLT---------------VAYKPQYIKADYEGTV 364
Query: 1102 RENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161
E ++ A S K +L G+ D YD E LSGG+ QR+A+A
Sbjct: 365 YELLSKIDASKLNSNFYKTELLKPL-----GIIDLYDREVNE----LSGGELQRVAIAAT 415
Query: 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVI 1218
+L++ I LLDE ++ LD V A+ +M +T +VV H + I SD + V
Sbjct: 416 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF 475
Query: 1219 KNGRVVEQGSHNELVALSRG 1238
+ G + G + + G
Sbjct: 476 E-GEPGKYGRALPPMGMREG 494
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 6e-31
Identities = 59/260 (22%), Positives = 104/260 (40%), Gaps = 41/260 (15%)
Query: 324 RTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSG 383
R I + + + + Y S L+ + G+ +G+VG +G
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNG 322
Query: 384 SGKSTTIALLQRFYDPVEGEVLLDG---YKIRRLHLKWLRSQMGLVNQEPVLFATSITEN 440
GK+T + +L +P EG++ D YK + + E L +
Sbjct: 323 IGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKAD-----YEGTVYE--LLSKIDASK 375
Query: 441 ILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIR 500
+ +++ + D Y+ +V +L SGG+ QR+AIA L+R
Sbjct: 376 L---NSNFYKTELLKPLG----------IIDLYDREVNEL----SGGELQRVAIAATLLR 418
Query: 501 DPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIR-TANLIMVLKAG 557
D I LLDE ++ LD + V AI + + +T L++ H + I ++ +MV + G
Sbjct: 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE-G 477
Query: 558 KVVESG------SHNELMNR 571
+ + G E MNR
Sbjct: 478 EPGKYGRALPPMGMREGMNR 497
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 3e-25
Identities = 51/232 (21%), Positives = 86/232 (37%), Gaps = 34/232 (14%)
Query: 1012 KNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLE-RFYD-PLK 1065
++ Y + ++ G V +VG +G GKST + G L
Sbjct: 25 EDCVHRYGVN---AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDS 81
Query: 1066 GSVF---MDEQDIRNYNLKQLRSHIALVSQE------PTLFAGTIRENIAYGKADARESE 1116
+++NY K I V + P G + E + KAD
Sbjct: 82 WDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLK--KADETGKL 139
Query: 1117 IKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATS 1176
+ L +++ + LSGG+ QR+A+A A+L+N + DE +S
Sbjct: 140 EEVVKAL--------ELENVLEREIQ----HLSGGELQRVAIAAALLRNATFYFFDEPSS 187
Query: 1177 ALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQ 1226
LD A+ ++ G++ +VV H L+ + SD I V+ V
Sbjct: 188 YLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYG 239
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 5e-25
Identities = 48/227 (21%), Positives = 89/227 (39%), Gaps = 26/227 (11%)
Query: 349 DVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQ-----RFYD-PVEG 402
D Y + VL L + V G VG+VG +G+GKST + +L
Sbjct: 26 DCVHRYG--VNAFVLYRLPV-VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSW 82
Query: 403 EVLLDGYKIRRLH---LKWLRSQMGLVNQEPVLFATSITENILFGK--DGASMDDVISAA 457
+ ++ ++ L K ++ V + + + GK + D
Sbjct: 83 DGVIRAFRGNELQNYFEKLKNGEIRPVVKPQY---VDLIPKAVKGKVIELLKKADETGKL 139
Query: 458 KAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ 517
+ + + + +SGG+ QR+AIA AL+R+ DE +S LD +
Sbjct: 140 EEVVKALELENVLEREI-------QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIR 192
Query: 518 SERIVQEAIDK-VSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVES 562
AI + +G++ L++ H L+ + +++I V+ V
Sbjct: 193 QRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYG 239
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 6e-31
Identities = 74/246 (30%), Positives = 121/246 (49%), Gaps = 38/246 (15%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
M + + ++ ++ P +L +SL ++ G+ + ++G SGCGK+T++ L F P
Sbjct: 1 MTAALHIGHLSKSFQNTP---VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD 57
Query: 1065 KGSVFMDEQDI--RNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYG--KADARESEIKK 1119
G + + + I +N NL + + QE LF T+ NIAYG R ++ ++
Sbjct: 58 SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQ 117
Query: 1120 --AAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSA 1177
A+L IS + Y +LSGGQ+QR ALARA+ +P ++LLDE SA
Sbjct: 118 RIEAMLELTG--ISELAGRYPH-------ELSGGQQQRAALARALAPDPELILLDEPFSA 168
Query: 1178 LDS-VSESL------VQEALEKMMMGRTCVVVAH----RLSTIQKSDTIAVIKNGRVVEQ 1226
LD + + A G++ V V+H L +D IAV+K GR+++
Sbjct: 169 LDEQLRRQIREDMIAALRAN-----GKSAVFVSHDREEALQY---ADRIAVMKQGRILQT 220
Query: 1227 GSHNEL 1232
S +EL
Sbjct: 221 ASPHEL 226
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 9e-25
Identities = 64/234 (27%), Positives = 108/234 (46%), Gaps = 41/234 (17%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKI--RRLHL 416
+T VL ++L + G+ + ++G SG GK+T + L F P GE+ L G I + +L
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75
Query: 417 KWLRSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANA------HDFITKL 469
++G + QE VLF ++ NI +G + + +
Sbjct: 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRY 135
Query: 470 PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV 529
P ++SGGQ+QR A+ARAL DP+++LLDE SALD Q R ++E +
Sbjct: 136 PH-----------ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAA 184
Query: 530 SK--GRTTLI----------IAHRLSTIRTANLIMVLKAGKVVESGSHNELMNR 571
+ G++ + A R I V+K G+++++ S +EL +
Sbjct: 185 LRANGKSAVFVSHDREEALQYADR---------IAVMKQGRILQTASPHELYRQ 229
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 7e-31
Identities = 60/260 (23%), Positives = 104/260 (40%), Gaps = 41/260 (15%)
Query: 324 RTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSG 383
R I + +E+ + Y S L+ + G+ +G+VG +G
Sbjct: 337 RPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNG 392
Query: 384 SGKSTTIALLQRFYDPVEGEVLLDG---YKIRRLHLKWLRSQMGLVNQEPVLFATSITEN 440
GK+T + +L +P EG+V D YK + + + E L + +
Sbjct: 393 IGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAE-----YEGTVYE--LLSKIDSSK 445
Query: 441 ILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIR 500
+ +++ + D Y+ V L SGG+ QR+AIA L+R
Sbjct: 446 L---NSNFYKTELLKPLG----------IIDLYDRNVEDL----SGGELQRVAIAATLLR 488
Query: 501 DPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTI-RTANLIMVLKAG 557
D I LLDE ++ LD + V AI + + +T L++ H + I ++ ++V + G
Sbjct: 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE-G 547
Query: 558 KVVESG------SHNELMNR 571
+ G E MNR
Sbjct: 548 EPGRHGRALPPMGMREGMNR 567
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 7e-30
Identities = 58/246 (23%), Positives = 100/246 (40%), Gaps = 29/246 (11%)
Query: 985 LDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVG 1044
+ R + + + +E + Y + L+ +I G+ + +VG
Sbjct: 334 VRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVG 389
Query: 1045 QSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIREN 1104
+G GK+T + +L +P +G V D Q +I + GT+ E
Sbjct: 390 PNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYK---PQ---YIKAEYE------GTVYEL 437
Query: 1105 IAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILK 1164
++ + S K +L G+ D YD + LSGG+ QR+A+A +L+
Sbjct: 438 LSKIDSSKLNSNFYKTELL-----KPLGIIDLYDRNVED----LSGGELQRVAIAATLLR 488
Query: 1165 NPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAVIKNG 1221
+ I LLDE ++ LD V A+ +M +T +VV H + I SD + V + G
Sbjct: 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE-G 547
Query: 1222 RVVEQG 1227
G
Sbjct: 548 EPGRHG 553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 7e-27
Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 16/223 (7%)
Query: 348 RDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQR-----FYD-PVE 401
D Y + VL L + V G VG+VG +G+GK+T + +L +
Sbjct: 95 EDCVHRY--GVNAFVLYRLPI-VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151
Query: 402 GEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAAN 461
+ ++ ++ L + R + G + + + GK +++
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVR----ELLKKVDEVG 207
Query: 462 AHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERI 521
+ + K E + + Q+SGG+ QR+AIA AL+R DE +S LD +
Sbjct: 208 KFEEVVKEL-ELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLK 266
Query: 522 VQEAIDKVSKGRTTLIIA-HRLSTI-RTANLIMVLKAGKVVES 562
V I +++ +++ H L+ + +++I V+ V
Sbjct: 267 VARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYG 309
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 7e-26
Identities = 50/231 (21%), Positives = 86/231 (37%), Gaps = 34/231 (14%)
Query: 1012 KNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTII----GLLE-RFYD-PLK 1065
++ Y + ++ G V +VG +G GK+T + G L +
Sbjct: 95 EDCVHRYGVN---AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151
Query: 1066 GSVFMDE---QDIRNYNLKQLRSHIALVSQE------PTLFAGTIRENIAYGKADARESE 1116
+ +++NY + I V + P G +RE + K D
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLK--KVDEVGKF 209
Query: 1117 IKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATS 1176
+ L +++ D QLSGG+ QR+A+A A+L+ DE +S
Sbjct: 210 EEVVKEL--------ELENVLDRELH----QLSGGELQRVAIAAALLRKAHFYFFDEPSS 257
Query: 1177 ALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVE 1225
LD V + ++ G+ +VV H L+ + SD I V+ V
Sbjct: 258 YLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVY 308
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 2e-30
Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 26/214 (12%)
Query: 1030 LSLKIEAGKT-VALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088
L++ E G+ L+G +G GKS + L+ P +G V ++ DI L R I
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIG 73
Query: 1089 LVSQEPTLFAG-TIRENIAYGKADARESEIKK--AAVLANAHEFISGMKDGYDTYCGERG 1145
V Q+ LF ++ NIAYG + E + + I+ + D
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLG--IAHLLDRKPA------ 125
Query: 1146 VQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKM--MMGRTCVVVA 1203
+LSGG++QR+ALARA++ P +LLLDE SA+D ++ ++ E L + + V
Sbjct: 126 -RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184
Query: 1204 HRLSTIQK-----SDTIAVIKNGRVVEQGSHNEL 1232
H +D +AV+ NGR+VE+G EL
Sbjct: 185 HD----LIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 63/214 (29%), Positives = 104/214 (48%), Gaps = 26/214 (12%)
Query: 366 LNLRVPAGKS-VGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424
LN+ G+ L+G +G+GKS + L+ P GEV L+G I L + R +G
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73
Query: 425 LVNQEPVLFA-TSITENILFGKDGASMDD----VISAAKAANAHDFITKLPDGYETQVGQ 479
V Q+ LF S+ NI +G + V A+ + + P
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-------- 125
Query: 480 LGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLI 537
++SGG++QR+A+ARAL+ P++LLLDE SA+D +++ ++ E + V + L
Sbjct: 126 ---RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182
Query: 538 IAHRLS---TIRTANLIMVLKAGKVVESGSHNEL 568
+ H L + A+ + V+ G++VE G EL
Sbjct: 183 VTHDLIEAAML--ADEVAVMLNGRIVEKGKLKEL 214
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 4e-30
Identities = 67/236 (28%), Positives = 116/236 (49%), Gaps = 34/236 (14%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IE++++ + L LSLK+E+G+ ++G +G GK+ + L+ F+ P G +
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYG----KADARESEIKKAAVL 1123
+D +D+ + L + IA V Q +LF +++N+ +G K + + A
Sbjct: 58 LLDGKDVTD--LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK-RVLDTARD 114
Query: 1124 ANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183
I + D LSGG++QR+ALARA++ NP ILLLDE SALD ++
Sbjct: 115 LK----IEHLLDRNPL-------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQ 163
Query: 1184 SLVQEALEKM--MMGRTCVVVAHRLSTIQK-----SDTIAVIKNGRVVEQGSHNEL 1232
+E L + T + + H Q +D IAV+ +G++++ G E+
Sbjct: 164 ENAREMLSVLHKKNKLTVLHITHD----QTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 9e-26
Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 38/241 (15%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IE + + L L+L+V +G+ ++G +G+GK+ + L+ F+ P G +
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 405 LLDGYKIRRL--HLKWLRSQMGLVNQEPVLFA-TSITENILFG--KDGASMDD-VISAAK 458
LLDG + L + + V Q LF ++ +N+ FG V+ A+
Sbjct: 58 LLDGKDVTDLSPE----KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTAR 113
Query: 459 AANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS 518
+ + P +SGG++QR+A+ARAL+ +PKILLLDE SALD ++
Sbjct: 114 DLKIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT 162
Query: 519 ERIVQEAIDKVSK--GRTTLIIAH------RLSTIRTANLIMVLKAGKVVESGSHNELMN 570
+ +E + + K T L I H ++ R I V+ GK+++ G E+
Sbjct: 163 QENAREMLSVLHKKNKLTVLHITHDQTEARIMAD-R----IAVVMDGKLIQVGKPEEIFE 217
Query: 571 R 571
+
Sbjct: 218 K 218
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 3e-29
Identities = 42/229 (18%), Positives = 96/229 (41%), Gaps = 37/229 (16%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+E RD+ Y D VL+ + + + G V G +G GK+T + + + P++GE+
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFAT-SITENILF-----GKDGA--SMDDVISA 456
+ +G I ++ + ++ + +E ++ S+ + + G + D + +
Sbjct: 67 IYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 457 AKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDA 516
+ + + +L S G +R+ +A L+ + +I +LD+ A+D
Sbjct: 122 VEVLDLKKKLGEL---------------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 517 QSERIVQEAIDKVSKGRTTLIIAHRLST--IRTANLIMVLKAGKVVESG 563
S+ V ++I ++ K + +II S + ++ L
Sbjct: 167 DSKHKVLKSILEILKEKGIVII---SSREELSYCDVNENLHKYSTKIDK 212
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 6e-29
Identities = 44/227 (19%), Positives = 92/227 (40%), Gaps = 33/227 (14%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+E++++ Y D+ +L+ +++ IE G V G +G GK+T++ + + PLKG +
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIA-----YGKADARESEIKKAAV 1122
+ +++ I + +E + ++ + + YG ++EI A
Sbjct: 67 I-----YNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNKNEIMDALE 120
Query: 1123 LANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVS 1182
+ +K LS G +R+ LA +L N I +LD+ A+D S
Sbjct: 121 SVE----VLDLKKKLGE--------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168
Query: 1183 ESLVQEALEKMM--MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQG 1227
+ V +++ +++ G + LS D +
Sbjct: 169 KHKVLKSILEILKEKGIVIISSREELSYC---DVNENLHKYSTKIDK 212
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 4e-29
Identities = 51/225 (22%), Positives = 89/225 (39%), Gaps = 23/225 (10%)
Query: 357 RPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHL 416
+ L N G+ +G++G +G GK+T +L EG V + +
Sbjct: 278 KLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQ 337
Query: 417 KWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQ 476
+ + G V Q + + ++V L E+
Sbjct: 338 RIFPNYDGTVQQ---YLENASKDA--LSTSSWFFEEVTKRLN----------LHRLLESN 382
Query: 477 VGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRT 534
V L SGG+ Q++ IA L ++ + +LD+ +S LD + IV +AI +V++
Sbjct: 383 VNDL----SGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAV 438
Query: 535 TLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNRGEGGEYY 578
T II H LS A+ I+V K G+ ++G + G +
Sbjct: 439 TFIIDHDLSIHDYIADRIIVFK-GEPEKAGLATSPVTLKTGMNEF 482
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 2e-28
Identities = 49/261 (18%), Positives = 99/261 (37%), Gaps = 37/261 (14%)
Query: 987 RRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQS 1046
R EI + D+ + ++K + L + + + G+ + ++G +
Sbjct: 246 RPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIK--KLGDFQLVVDNGEAKEGEIIGILGPN 303
Query: 1047 GCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIA 1106
G GK+T +L +GSV ++Q + Q + GT+++ +
Sbjct: 304 GIGKTTFARILVGEITADEGSVTPEKQILSYK--PQR------IFPNYD---GTVQQYL- 351
Query: 1107 YGKADARESEIKKAAVLANAHEFIS------GMKDGYDTYCGERGVQLSGGQKQRIALAR 1160
E L+ + F + ++ + LSGG+ Q++ +A
Sbjct: 352 ---------ENASKDALSTSSWFFEEVTKRLNLHRLLESNVND----LSGGELQKLYIAA 398
Query: 1161 AILKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQK-SDTIAV 1217
+ K + +LD+ +S LD +V +A++++ ++ H LS +D I V
Sbjct: 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIV 458
Query: 1218 IKNGRVVEQGSHNELVALSRG 1238
K G + G V L G
Sbjct: 459 FK-GEPEKAGLATSPVTLKTG 478
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 4e-26
Identities = 42/223 (18%), Positives = 83/223 (37%), Gaps = 23/223 (10%)
Query: 363 LQGLNLRVP-AGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLR- 420
+ L P +G++G +G GK+T + +L P G+ K L K R
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVL--KRFRG 71
Query: 421 SQMGLVNQEP---------VLFATSITENILFGKDGASMDDVISAAKAANAHDF--ITKL 469
++ +E + L G + + K + +T L
Sbjct: 72 KEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNL 131
Query: 470 PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV 529
+ +SGG QR+ +A +L+R+ + + D+ +S LD + + +AI ++
Sbjct: 132 WNKDA-------NILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL 184
Query: 530 SKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNR 571
K + +++ H L + +LI ++ V R
Sbjct: 185 LKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAAR 227
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 6e-26
Identities = 46/235 (19%), Positives = 90/235 (38%), Gaps = 37/235 (15%)
Query: 1012 KNVFFAYPTRPDQMILKGLSLKI-EAGKTVALVGQSGCGKSTII----GLLERFYDPLKG 1066
V Y K L + + ++G++G GK+T++ G + +
Sbjct: 3 GEVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNS 58
Query: 1067 SVFMDEQ-------DIRNY------NLKQLRSHIALVSQEPTLFAGTIRENIAYGKADAR 1113
V DE +I NY N ++ I V GT+ E + +
Sbjct: 59 KVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGK 118
Query: 1114 ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDE 1173
+ E+K+ + M + ++ LSGG QR+ +A ++L+ + + D+
Sbjct: 119 KDEVKE----------LLNMTNLWNKDAN----ILSGGGLQRLLVAASLLREADVYIFDQ 164
Query: 1174 ATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQG 1227
+S LD + +A+ +++ + +VV H L + +D I +I V
Sbjct: 165 PSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGR 219
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 45/248 (18%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
RI +KNV + + + L +++ IE G+ ++G SG GK+T + ++ P G
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 1068 VFMDEQDIRNYNLKQLRSH---IALVSQEPTLFAG-TIRENIAYG------KADARESEI 1117
++ D++ + + + I +V Q L+ T ENIA+ + +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 1118 KKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSA 1177
++ A + + I + + + +LSG Q+QR+ALARA++K+PS+LLLDE S
Sbjct: 122 EEVAKILD----IHHVLNHFPR-------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 1178 LDS---VS-----ESLVQEALEKMMMGRTCVVVAHRLSTIQK-----SDTIAVIKNGRVV 1224
LD+ S + + +G T +VV+H +D + V+ G++V
Sbjct: 171 LDARMRDSARALVKEVQSR------LGVTLLVVSHD----PADIFAIADRVGVLVKGKLV 220
Query: 1225 EQGSHNEL 1232
+ G +L
Sbjct: 221 QVGKPEDL 228
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 2e-22
Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 25/241 (10%)
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403
I ++V + + L +N+ + G+ G++G SG+GK+T + ++ P GE
Sbjct: 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 404 VLLDGYKIRRLHLKWLRSQ---MGLVNQEPVLFAT-SITENILFGKDGASMDD------V 453
+ D + + + +G+V Q L+ + ENI F M V
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 454 ISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSA 513
AK + H + P ++SG Q+QR+A+ARAL++DP +LLLDE S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 514 LDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMN 570
LDA+ + + +V G T L+++H + I A+ + VL GK+V+ G +L +
Sbjct: 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
Query: 571 R 571
Sbjct: 231 N 231
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 2e-21
Identities = 65/189 (34%), Positives = 94/189 (49%), Gaps = 43/189 (22%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDP 1063
I+L+N+ + + L ++LKI+ G+ +AL+G SG GKST I G+ Y P
Sbjct: 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI----YKP 55
Query: 1064 LKGSVFMDEQDIRNYNLKQLRSHIALVSQE----PTLFAGTIRENIAYG----KADARES 1115
G ++ DE+D+ K R+ + LV Q P + T+ +NIA+ KA
Sbjct: 56 TSGKIYFDEKDVTELPPKD-RN-VGLVFQNWALYPHM---TVYKNIAFPLELRKAP--RE 108
Query: 1116 EIKK-----AAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILL 1170
EI K A +L D QLSGGQ+QR+A+ARA++K P +LL
Sbjct: 109 EIDKKVREVAKML------------HIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLL 156
Query: 1171 LDEATSALD 1179
LDE S LD
Sbjct: 157 LDEPLSNLD 165
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 7e-18
Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 29/184 (15%)
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTT---IALLQRFYDPV 400
EI+ ++ + + L +NL++ G+ + L+G SGSGKST IA + Y P
Sbjct: 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI---YKPT 56
Query: 401 EGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFAT-SITENILFGKDGASMDD------V 453
G++ D + L K R+ +GLV Q L+ ++ +NI F + V
Sbjct: 57 SGKIYFDEKDVTELPPK-DRN-VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKV 114
Query: 454 ISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSA 513
AK + + + P Q+SGGQ+QR+AIARAL+++P++LLLDE S
Sbjct: 115 REVAKMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEVLLLDEPLSN 163
Query: 514 LDAQ 517
LDA
Sbjct: 164 LDAL 167
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 6e-20
Identities = 61/199 (30%), Positives = 98/199 (49%), Gaps = 43/199 (21%)
Query: 998 GRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST----I 1053
G +I+ ++L+N+ + + + L+L I+ G+ + L+G SGCGK+T I
Sbjct: 1 GNNIEVIKMVEVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMI 57
Query: 1054 IGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQE----PTLFAGTIRENIAYG- 1108
GL E +P +G ++ ++D+ K R+ I++V Q P + T+ ENIA+
Sbjct: 58 AGL-E---EPTEGRIYFGDRDVTYLPPKD-RN-ISMVFQSYAVWPHM---TVYENIAFPL 108
Query: 1109 ---KADARESEIKK-----AAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALAR 1160
K + EI K A +L + QLSGGQ+QR+A+AR
Sbjct: 109 KIKKFP--KDEIDKRVRWAAELL------------QIEELLNRYPAQLSGGQRQRVAVAR 154
Query: 1161 AILKNPSILLLDEATSALD 1179
AI+ P +LL+DE S LD
Sbjct: 155 AIVVEPDVLLMDEPLSNLD 173
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 8e-16
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 29/183 (15%)
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTT---IALLQRFYDPV 400
E++ ++ + + + LNL + G+ + L+G SG GK+TT IA L+ +P
Sbjct: 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE---EPT 64
Query: 401 EGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFAT-SITENILFGKDGASMDD------V 453
EG + + L K M V Q ++ ++ ENI F V
Sbjct: 65 EGRIYFGDRDVTYLPPKDRNISM--VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV 122
Query: 454 ISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSA 513
AA+ + + + P Q+SGGQ+QR+A+ARA++ +P +LL+DE S
Sbjct: 123 RWAAELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 171
Query: 514 LDA 516
LDA
Sbjct: 172 LDA 174
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 1e-19
Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 41/191 (21%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDP 1063
+ L +V+ + + ++ +SL+++ G+ + L+G SGCGK+T I GL E +P
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL-E---EP 55
Query: 1064 LKGSVFMDEQDIRNYNLKQLRS----HIALVSQE----PTLFAGTIRENIAYG--KADAR 1113
+G +++ ++ + + IA+V Q P + T+ +NIA+
Sbjct: 56 SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHM---TVYDNIAFPLKLRKVP 112
Query: 1114 ESEIKK-----AAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSI 1168
EI + A +L G + +LSGGQ+QR+AL RAI++ P +
Sbjct: 113 RQEIDQRVREVAELL------------GLTELLNRKPRELSGGQRQRVALGRAIVRKPQV 160
Query: 1169 LLLDEATSALD 1179
L+DE S LD
Sbjct: 161 FLMDEPLSNLD 171
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 9e-16
Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 61/202 (30%)
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTT---IALLQRFYDPV 400
+ DV+ + + ++ ++L V G+ + L+G SG GK+TT IA L+ +P
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE---EPS 56
Query: 401 EGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFAT--------------------SITEN 440
G++ + LV ++ +N
Sbjct: 57 RGQIYIGDK---------------LVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDN 101
Query: 441 ILFGKDGASMDD------VISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAI 494
I F + V A+ + + + P ++SGGQ+QR+A+
Sbjct: 102 IAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR-----------ELSGGQRQRVAL 150
Query: 495 ARALIRDPKILLLDEATSALDA 516
RA++R P++ L+DE S LDA
Sbjct: 151 GRAIVRKPQVFLMDEPLSNLDA 172
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 88.3 bits (220), Expect = 2e-19
Identities = 59/235 (25%), Positives = 115/235 (48%), Gaps = 35/235 (14%)
Query: 361 LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLR 420
++G++L+VP G+ V L+G +G+GK+TT++ + +G+++ +G I +
Sbjct: 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP-AHVI 78
Query: 421 SQMGLVNQEP---VLFAT-SITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYET- 475
++MG+ P +F ++ EN++ G A + L +
Sbjct: 79 NRMGIA-LVPEGRRIFPELTVYENLMMG-----------AYNRKDKEGIKRDLEWIFSLF 126
Query: 476 -----QVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS 530
++ QLG +SGG++Q +AI RAL+ PK+L++DE + L + +V E + +
Sbjct: 127 PRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---APILVSEVFEVIQ 183
Query: 531 K----GRTTLII---AHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYY 578
K G T L++ A ++ A+ VL+ G++V G +EL++ + Y
Sbjct: 184 KINQEGTTILLVEQNALG--ALKVAHYGYVLETGQIVLEGKASELLDNEMVRKAY 236
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 7e-17
Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 35/226 (15%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPLKGSVFMDEQDIRNYNLK 1081
+KG+ LK+ G+ V L+G +G GK+T I GL+ KG + + QDI N
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR----AQKGKIIFNGQDITNKPAH 76
Query: 1082 QL-RSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDT 1139
+ R IALV + +F T+ EN+ G A R+ + L +K
Sbjct: 77 VINRMGIALVPEGRRIFPELTVYENLMMG-AYNRKDKEGIKRDLEWIFSLFPRLK----- 130
Query: 1140 YCGERGVQ----LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM- 1194
ER Q LSGG++Q +A+ RA++ P +L++DE + L + LV E E +
Sbjct: 131 ---ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---APILVSEVFEVIQK 184
Query: 1195 ---MGRTCVVV---AHRLSTIQKSDTIAVIKNGRVVEQGSHNELVA 1234
G T ++V A ++ + V++ G++V +G +EL+
Sbjct: 185 INQEGTTILLVEQNALG--ALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 2e-19
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 39/187 (20%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDP 1063
I + N+ + + G+S +++ G+ VAL+G SGCGK+T + G+ Y P
Sbjct: 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI----YKP 55
Query: 1064 LKGSVFMDEQDIRNYNLKQLRSHIALVSQE----PTLFAGTIRENIAYG------KADAR 1113
G ++ D+ + + K R + +V Q P + T+ ENIA+ D
Sbjct: 56 TSGEIYFDDVLVNDIPPKY-RE-VGMVFQNYALYPHM---TVFENIAFPLRARRISKDEV 110
Query: 1114 ESEIKKAA-VLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLD 1172
E + + A L D + QLSGGQ+QR+ALARA++K P +LL D
Sbjct: 111 EKRVVEIARKL------------LIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFD 158
Query: 1173 EATSALD 1179
E S LD
Sbjct: 159 EPLSNLD 165
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 4e-15
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 29/183 (15%)
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTT---IALLQRFYDPV 400
I ++ + + G++ V G+ V L+G SG GK+TT +A + P
Sbjct: 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY---KPT 56
Query: 401 EGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFAT-SITENILFGKDGASMDD------V 453
GE+ D + + K ++G+V Q L+ ++ ENI F + V
Sbjct: 57 SGEIYFDDVLVNDIPPK--YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRV 114
Query: 454 ISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSA 513
+ A+ + + + P Q+SGGQ+QR+A+ARAL++ PK+LL DE S
Sbjct: 115 VEIARKLLIDNLLDRKPT-----------QLSGGQQQRVALARALVKQPKVLLFDEPLSN 163
Query: 514 LDA 516
LDA
Sbjct: 164 LDA 166
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 4e-19
Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 28/222 (12%)
Query: 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL--HLKWLR 420
L G+++ V G ++G +GSGKST I ++ F EG V + I
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPA---EL 79
Query: 421 SQMGLVN--QEPVLFAT-SITENILFGKDGASMDDVISA-------------AKAANAHD 464
G+V Q P ++ EN+L G+ + S KA +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 465 FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE 524
F+ KL Y+ + G+L SGGQ + + I RAL+ +PK++++DE + + +
Sbjct: 140 FL-KLSHLYDRKAGEL----SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 194
Query: 525 AIDKV-SKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGS 564
+ ++ +KG T LII HRL + + + V+ G+++ G
Sbjct: 195 HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 6e-16
Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 46/231 (19%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
L G+S+ + G ++G +G GKST+I ++ F +G V+ + +DI N
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN-----KEPA 77
Query: 1087 ------IALVSQEPTLFAG-TIRENIA---------------YGKADARESEIKKAA--V 1122
I Q P T+ EN+ Y K +E E+ + A +
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 1123 LANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVS 1182
L EF+ + YD G +LSGGQ + + + RA++ NP ++++DE + V+
Sbjct: 138 L----EFL-KLSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEPIA---GVA 185
Query: 1183 ESLVQEALEKMM----MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGS 1228
L + ++ G T +++ HRL + D + V+ NG+++ +G
Sbjct: 186 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 5e-17
Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 57/195 (29%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPL 1064
++L+NV A+ + ++ K ++L I G+ V VG SGCGKST I GL E
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-E---TIT 56
Query: 1065 KGSVFMDEQDI-------RNYNLKQLRSHIALVSQE----PTLFAGTIRENIAYG----K 1109
G +F+ E+ + R + +V Q P L ++ EN+++G
Sbjct: 57 SGDLFIGEKRMNDTPPAERG---------VGMVFQSYALYPHL---SVAENMSFGLKLAG 104
Query: 1110 ADARESEIKK-----AAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILK 1164
A + I + A VL + LSGGQ+QR+A+ R ++
Sbjct: 105 AK--KEVINQRVNQVAEVL------------QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150
Query: 1165 NPSILLLDEATSALD 1179
PS+ LLDE S LD
Sbjct: 151 EPSVFLLDEPLSNLD 165
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 3e-12
Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 57/197 (28%)
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTT---IALLQRFYDPV 400
++ ++V + + +V + +NL + G+ V VG SG GKST IA L+
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---TIT 56
Query: 401 EGEVLLDGYKIRRLHLKWLRSQMGLVNQEP--------VLFAT-------SITENILFG- 444
G++ + +R +N P V F + S+ EN+ FG
Sbjct: 57 SGDLFIGE---KR------------MNDTPPAERGVGMV-FQSYALYPHLSVAENMSFGL 100
Query: 445 ----KDGASMDD-VISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALI 499
++ V A+ + + P L SGGQ+QR+AI R L+
Sbjct: 101 KLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-------KAL----SGGQRQRVAIGRTLV 149
Query: 500 RDPKILLLDEATSALDA 516
+P + LLDE S LDA
Sbjct: 150 AEPSVFLLDEPLSNLDA 166
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 2e-14
Identities = 43/200 (21%), Positives = 78/200 (39%), Gaps = 31/200 (15%)
Query: 345 IEFRDVYFCYPSRP--DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402
E D+ C S ++L LR+ + G+ G +G GKST + + V+G
Sbjct: 431 DEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--GQVDG 488
Query: 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAA--KAA 460
+ + V + + + +D V +
Sbjct: 489 FPTQEECRT------------VYVEHDIDGTHSDTSV----------LDFVFESGVGTKE 526
Query: 461 NAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER 520
D + + E + +SGG K ++A+ARA++R+ ILLLDE T+ LD +
Sbjct: 527 AIKDKLIEFGFTDEMIAMPIS-ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
Query: 521 IVQEAIDKVSKGRTTLIIAH 540
+ + + G T++ I+H
Sbjct: 586 WLVNYL--NTCGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 75.5 bits (185), Expect = 8e-14
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 29/187 (15%)
Query: 1020 TRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN 1079
+++L L+++ + + G +GCGKST++ + + Q
Sbjct: 444 AYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAI------------ANGQVDGFPT 491
Query: 1080 LKQLRSHIALVSQEPTLFAG--TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGY 1137
++ R V + ++ + + +E+ K F M
Sbjct: 492 QEECR--TVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFG----FTDEM---I 542
Query: 1138 DTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGR 1197
LSGG K ++ALARA+L+N ILLLDE T+ LD+V+ + + L G
Sbjct: 543 AMPISA----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGI 596
Query: 1198 TCVVVAH 1204
T + ++H
Sbjct: 597 TSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 65.1 bits (158), Expect = 1e-10
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 14/133 (10%)
Query: 443 FGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGF-----------QMSGGQKQR 491
+ + M + +A + F E LG +SGGQK +
Sbjct: 850 LVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVK 909
Query: 492 IAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAH-RLSTIRTANL 550
+ +A + P +++LDE T+ LD S + +A+ K +G +II H T
Sbjct: 910 LVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKAL-KEFEG-GVIIITHSAEFTKNLTEE 967
Query: 551 IMVLKAGKVVESG 563
+ +K G++ SG
Sbjct: 968 VWAVKDGRMTPSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 6e-09
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 1147 QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRL 1206
LSGGQK ++ LA + P +++LDE T+ LD S + +AL++ +++ H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIITHSA 958
Query: 1207 STIQK-SDTIAVIKNGRVV 1224
+ ++ + +K+GR+
Sbjct: 959 EFTKNLTEEVWAVKDGRMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 1e-06
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 999 RDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLE 1058
+K + + +++ N+ F YP + + ++ + +A++G +G GKST+I +L
Sbjct: 662 EGVKTKQKAIVKVTNMEFQYPG-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLT 720
Query: 1059 RFYDPLKGSV 1068
P G V
Sbjct: 721 GELLPTSGEV 730
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 2e-04
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
++ ++ F YP + +N + + ++G +G+GKST I +L P GEV
Sbjct: 672 VKVTNMEFQYPG-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 5e-12
Identities = 64/232 (27%), Positives = 103/232 (44%), Gaps = 47/232 (20%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALL--QRFYDPVEGEVLLDGYKIRRLHL 416
+L+G+NL VP G+ L+G +G+GKST +L Y GE+LLDG I L L
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENI--LEL 72
Query: 417 K-WLRSQMG--LVNQEPVLFATSITENILFGKDGASMDDVISAAKAA------NAHDFIT 467
R++ G L Q PV + G ++ + + A A +F T
Sbjct: 73 SPDERARKGLFLAFQYPV----EVP--------GVTIANFLRLALQAKLGREVGVAEFWT 120
Query: 468 KLPDGYETQVGQL-------------GFQMSGGQKQRIAIARALIRDPKILLLDEATSAL 514
K+ + + L GF SGG+K+R I + L+ +P +LDE S L
Sbjct: 121 KV----KKALELLDWDESYLSRYLNEGF--SGGEKKRNEILQLLVLEPTYAVLDETDSGL 174
Query: 515 DAQSERIVQEAIDKV-SKGRTTLIIAH--RLSTIRTANLIMVLKAGKVVESG 563
D + ++V ++ + L+I H R+ + + V+ G+VV +G
Sbjct: 175 DIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 59/223 (26%), Positives = 99/223 (44%), Gaps = 29/223 (13%)
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLL---ERFYDPLKGSVFMDEQDIRNYN 1079
+ ILKG++L + G+ AL+G +G GKST+ +L Y +G + +D ++I +
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE-YTVERGEILLDGENILELS 73
Query: 1080 LKQLRSH--IALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKD- 1135
+ R+ + L Q P G TI + E+ EF + +K
Sbjct: 74 PDE-RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVG-------VAEFWTKVKKA 125
Query: 1136 ----GYDTYCGERGVQ--LSGGQKQR--IALARAILKNPSILLLDEATSALDSVSESLVQ 1187
+D R + SGG+K+R I L +L+ P+ +LDE S LD + +V
Sbjct: 126 LELLDWDESYLSRYLNEGFSGGEKKRNEI-LQLLVLE-PTYAVLDETDSGLDIDALKVVA 183
Query: 1188 EALEKMMM-GRTCVVVAH--RLSTIQKSDTIAVIKNGRVVEQG 1227
+ M +V+ H R+ + D + V+ +GRVV G
Sbjct: 184 RGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 51/236 (21%)
Query: 359 DTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALL--QRFYDPVEGEVLLDGYKIRRLHL 416
D +L+GL+L V G+ ++G +GSGKST A L + Y+ G V G + L L
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL--LAL 89
Query: 417 K-WLRSQMG--LVNQEPVLFATSITENILFGKDGASMDDVISAAKAA----------NAH 463
R+ G + Q PV I G S + A A +
Sbjct: 90 SPEDRAGEGIFMAFQYPV----EIP--------GVSNQFFLQTALNAVRSYRGQETLDRF 137
Query: 464 DFITKLPDGYETQVGQL-------------GFQMSGGQKQRIAIARALIRDPKILLLDEA 510
DF + E ++ L GF SGG+K+R I + + +P++ +LDE+
Sbjct: 138 DFQDLM----EEKIALLKMPEDLLTRSVNVGF--SGGEKKRNDILQMAVLEPELCILDES 191
Query: 511 TSALDAQSERIVQEAIDKV-SKGRTTLIIAH--RLSTIRTANLIMVLKAGKVVESG 563
S LD + ++V + ++ + R+ +I+ H R+ + + VL G++V+SG
Sbjct: 192 DSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 59/223 (26%), Positives = 103/223 (46%), Gaps = 25/223 (11%)
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKST----IIGLLERFYDPLKGSVFMDEQDIRNY 1078
D+ IL+GLSL + G+ A++G +G GKST + G Y+ G+V +D+
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG--REDYEVTGGTVEFKGKDLLAL 89
Query: 1079 NLKQLRSH--IALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKD- 1135
+ + R+ I + Q P G + +A S + + + +F M++
Sbjct: 90 SPED-RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETL--DRFDFQDLMEEK 146
Query: 1136 ----GYDTYCGERGVQ--LSGGQKQR--IALARAILKNPSILLLDEATSALDSVSESLVQ 1187
R V SGG+K+R I L A+L+ P + +LDE+ S LD + +V
Sbjct: 147 IALLKMPEDLLTRSVNVGFSGGEKKRNDI-LQMAVLE-PELCILDESDSGLDIDALKVVA 204
Query: 1188 EALEKMMM-GRTCVVVAH--RLSTIQKSDTIAVIKNGRVVEQG 1227
+ + + R+ ++V H R+ K D + V+ GR+V+ G
Sbjct: 205 DGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 2e-11
Identities = 107/666 (16%), Positives = 191/666 (28%), Gaps = 220/666 (33%)
Query: 273 LVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDD 332
+ K E+ FV V L N + + R P++ T
Sbjct: 70 TLLSKQEEMVQKFVEEV------LR-----INYKFLMSP-------IKTEQRQPSMMTR- 110
Query: 333 KMGKALSYVRGEIEFRDVYF----CYP----SRPDT-LVLQG--LNLRVPAGKSVGLVGG 381
Y IE RD + + SR L L+ L LR K+V + G
Sbjct: 111 ------MY----IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP--AKNVLIDGV 158
Query: 382 SGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRL---HLKWLRSQMGLVNQEPVLFATSIT 438
GSGK+ +V L YK++ + WL + N + +
Sbjct: 159 LGSGKTWVAL-----------DVCLS-YKVQCKMDFKIFWLN--LKNCNSPETVLE--ML 202
Query: 439 ENIL--FGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIAR 496
+ +L + S D S K H +L R
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIK-LRIHSIQAEL--------------------------R 235
Query: 497 ALIRD---PKILL-LDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIM 552
L++ LL L + Q+ + A + K L+ T R +
Sbjct: 236 RLLKSKPYENCLLVLL------NVQNAKAW-NAFNLSCK---ILL------TTRFKQVTD 279
Query: 553 VLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASENDTSNDTFNDFSHQMDAINLYKR 612
L A +H L + ++ L + D D ++ N
Sbjct: 280 FLSAATT----THISLDHHSMTLTPDEVKSL--LLKYLDCRPQ---DLPREVLTTN---- 326
Query: 613 TIAPSPMSMRSSAASTPALNPFSPALSVGTPYSYTIQY--DPDDDSLGDRIDQSSYA--T 668
P +S+ + ++ G T + D L I +SS
Sbjct: 327 ---PRRLSI------------IAESIRDGLA---TWDNWKHVNCDKL-TTIIESSLNVLE 367
Query: 669 PSQWR----LLKI-----NMPE------WGSALLGCIASIGSGAVQPINAYCVGSLI--- 710
P+++R L + ++P W + + + +N SL+
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-------VNKLHKYSLVEKQ 420
Query: 711 ---------SIYFRTDK--SEIKSKSRTLSLFFLGVAVLNFISSLLQH---------YSF 750
SIY + R++ V N + Y +
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSI------VDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 751 SVMGEKLTK--RVREKLLGKLMTFEIGWFDQE-DNTSAAICARLATEANVVRSL------ 801
S +G L L +++ + + +Q+ + S A A + N ++ L
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS-GSILNTLQQLKFYKPY 533
Query: 802 VGD---RMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGK 858
+ D + LV AI + L+ S L+ IA+ + +
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED-EAIFEE---------A 583
Query: 859 ARKAQK 864
++ Q+
Sbjct: 584 HKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 2e-08
Identities = 63/384 (16%), Positives = 117/384 (30%), Gaps = 98/384 (25%)
Query: 921 FNTASTALAYWYGGRLLTQELITPEHLFQAFL-------ILLFTAYVIAEAGSMTSDISK 973
F T Y ++++ AF+ + ++++ I
Sbjct: 9 FETGEHQYQY--------KDIL--SVFEDAFVDNFDCKDVQDMPKSILSKE--EIDHIIM 56
Query: 974 GSNAV---RSVFAILDRRSE----------IDPDSP--------QGRDIKRQMRGRIELK 1012
+AV +F L + E + + + R R IE +
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 1013 N-------VFFAYP-TRPDQMI-LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP 1063
+ VF Y +R + L+ L++ K V + G G GK+ + + Y
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 1064 LK-----------GSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADA 1112
+ E + L++L I + + I+ I +A+
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLE--MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 1113 RE---SEIKKAA--VLANAHEFISGMK--DGYDTYC------GERGV--QLSGGQKQRIA 1157
R S+ + VL N + K + ++ C + V LS I+
Sbjct: 235 RRLLKSKPYENCLLVLLN----VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 1158 LARAILKNPSILLLDEATS----ALDSVSESLVQEALEKM-----MMGRTCVVVAHRLST 1208
L + L DE S LD + L +E L ++ + L+T
Sbjct: 291 LD----HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE---SIRDGLAT 343
Query: 1209 IQKSDTIAVIKNGRVVEQGSHNEL 1232
+ K ++E S N L
Sbjct: 344 WDNWKHVNCDKLTTIIES-SLNVL 366
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 4e-05
Identities = 69/464 (14%), Positives = 131/464 (28%), Gaps = 184/464 (39%)
Query: 704 YCVGSLISIY---FRTD---------------KSEIK-------SKSRTLSLFFL----- 733
Y ++S++ F + K EI + S TL LF+
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 734 GVAVLNFISSLLQ-HYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLA 792
V F+ +L+ +Y F L ++ + M + + +Q D ++
Sbjct: 76 EEMVQKFVEEVLRINYKF------LMSPIKTEQRQPSMMTRM-YIEQRDRLYNDN--QVF 126
Query: 793 TEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLM 852
+ NV R L +L ++ ++P ++NVL+
Sbjct: 127 AKYNVSR------------------------LQPYLKLRQALLELRP-------AKNVLI 155
Query: 853 KSMAG--KARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEES------ 904
+ G K + +A + ++++ +F L+
Sbjct: 156 DGVLGSGK--------TWVALDVCLSYKVQCKMDF-----KIFWLNLKNCNSPETVLEML 202
Query: 905 ------LKHSWYSGIGLFSS--QFFNTASTALAYWYGGRLLTQE------LI-----TPE 945
+ +W S S+ ++ L RLL + L+ +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-----RLLKSKPYENCLLVLLNVQNAK 257
Query: 946 HLFQAFLI---LLFTAYVIAEAGSMTSDIS---KGSNAVRSVFAILDRRSEIDPDSPQGR 999
AF + +L T T S A + ++ + PD
Sbjct: 258 AW-NAFNLSCKILLT----------TRFKQVTDFLSAATTTHISLDHHSMTLTPD----- 301
Query: 1000 DIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKT----VALVG----------- 1044
E+K++ Y Q L E T ++++
Sbjct: 302 ----------EVKSLLLKYLDCRPQ------DLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 1045 ---QSGCGK-STII---------GLLERFYDPLKGSVFMDEQDI 1075
C K +TII + +D L SVF I
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL--SVFPPSAHI 387
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 13/91 (14%)
Query: 1147 QLSGGQKQRIALA------RAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTC 1199
LSGG++ + LA + S+L+LDE T LD + +E+ +
Sbjct: 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116
Query: 1200 VVVAHRLSTIQKSDTI------AVIKNGRVV 1224
++V+H +D + VV
Sbjct: 117 ILVSHDEELKDAADHVIRISLENGSSKVEVV 147
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 3e-06
Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 472 GYETQVGQLGFQMSGGQKQRIAIA------RALIRDPKILLLDEATSALDAQSERIVQEA 525
+E + +SGG++ + +A L + +L+LDE T LD + R +
Sbjct: 47 VWEG-KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITI 105
Query: 526 IDK-VSKGRTTLIIAHRLSTIRTANLI 551
+++ + K ++++H A+ +
Sbjct: 106 MERYLKKIPQVILVSHDEELKDAADHV 132
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 5e-07
Identities = 38/271 (14%), Positives = 79/271 (29%), Gaps = 31/271 (11%)
Query: 972 SKGSNAVRSVFAILDRRSEIDPDSPQG-RDIKRQMRGRIELKNVFFAYPTRPDQMILKGL 1030
+ + + S + ++ N + + D ++
Sbjct: 92 YSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILESDE 151
Query: 1031 SLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALV 1090
+ + + + L K LKG E+ I + + A +
Sbjct: 152 AREKVVREVLNLDKFETAYK---------KLSELKGGSGGTEELIEKVKKYKALAREAAL 202
Query: 1091 SQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSG 1150
S+ L + E + E ++ G + LSG
Sbjct: 203 SKIGELASEIFAEFT---EGKYSEVVVRAEENKVRLFVVWEGKERPLTF--------LSG 251
Query: 1151 GQKQRIALA------RAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVA 1203
G++ + LA + S+L+LDE T LD + +E+ + ++V+
Sbjct: 252 GERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 311
Query: 1204 HRLSTIQKSDTIAVIKNGRVVEQGSHNELVA 1234
H +D + I S E+V+
Sbjct: 312 HDEELKDAADHVIRISLE---NGSSKVEVVS 339
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 9e-07
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 483 QMSGGQKQ------RIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDK-VSKGRTT 535
+SGG++ R+A++ L + +L+LDE T LD + R + +++ + K
Sbjct: 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 307
Query: 536 LIIAHRLSTIRTANLIMVLK 555
++++H A+ ++ +
Sbjct: 308 ILVSHDEELKDAADHVIRIS 327
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 7e-05
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 1147 QLSGGQKQRIALARAI-------LKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTC 1199
LSGG++ +AL+ + ++LDE T LD + + E K+
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 1200 VVVAHRLSTIQKSDTIAVIK 1219
+++ H +D I +K
Sbjct: 340 IIITHHRELEDVADVIINVK 359
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 483 QMSGGQKQRIAIARAL-------IRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTT 535
+SGG++ +A++ L + ++LDE T LD + E KV
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 536 LIIAHR 541
+II H
Sbjct: 340 IIITHH 345
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1255 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-98 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-98 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 8e-95 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 8e-92 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 5e-90 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-88 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-84 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-84 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-84 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-82 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-73 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-71 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-53 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-50 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-46 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 9e-44 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-45 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-41 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-43 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-41 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-42 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-41 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-37 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-36 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-37 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-37 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-37 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-36 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-36 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-35 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-36 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-35 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 7e-36 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-35 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-32 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 5e-30 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-31 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-29 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-30 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-27 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 4e-25 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 6e-23 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 1e-12 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 2e-09 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 3e-12 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 3e-08 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-10 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.002 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 1e-07 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 6e-07 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 0.001 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.003 | |
| d1znwa1 | 182 | c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu | 0.003 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 311 bits (799), Expect = 3e-98
Identities = 119/251 (47%), Positives = 175/251 (69%), Gaps = 3/251 (1%)
Query: 336 KALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQR 395
+ + +G I+ V F Y + +L+ +NL + G++V VG SG GKST I L+ R
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 66
Query: 396 FYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVIS 455
FYD G++L+DG+ I+ LR+Q+GLV Q+ +LF+ ++ ENIL G+ A+ ++V+
Sbjct: 67 FYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVE 126
Query: 456 AAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD 515
AAK ANAHDFI LP GY+T+VG+ G ++SGGQKQR++IAR + +P IL+LDEATSALD
Sbjct: 127 AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 186
Query: 516 AQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGG 575
+SE I+QEA+D +SK RTTLI+AHRLSTI A+ I+V++ G +VE+G+H EL+ + G
Sbjct: 187 LESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK--QG 244
Query: 576 EYYQMVELQQM 586
Y + +Q +
Sbjct: 245 AYEHLYSIQNL 255
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 311 bits (798), Expect = 3e-98
Identities = 124/255 (48%), Positives = 174/255 (68%), Gaps = 4/255 (1%)
Query: 994 DSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTI 1053
+ + I+ + +GRI++ +V F Y + ILK ++L IE G+TVA VG SG GKST+
Sbjct: 3 NGVGAQPIEIK-QGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTL 60
Query: 1054 IGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADAR 1113
I L+ RFYD G + +D +I+++ LR+ I LV Q+ LF+ T++ENI G+ A
Sbjct: 61 INLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTAT 120
Query: 1114 ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDE 1173
+ E+ +AA +ANAH+FI + GYDT GERGV+LSGGQKQR+++AR L NP IL+LDE
Sbjct: 121 DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDE 180
Query: 1174 ATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELV 1233
ATSALD SES++QEAL+ + RT ++VAHRLSTI +D I VI+NG +VE G+H EL
Sbjct: 181 ATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHREL- 239
Query: 1234 ALSRGGAYYSLIKPQ 1248
+++ GAY L Q
Sbjct: 240 -IAKQGAYEHLYSIQ 253
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 302 bits (774), Expect = 8e-95
Identities = 121/254 (47%), Positives = 178/254 (70%), Gaps = 4/254 (1%)
Query: 332 DKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIA 391
D+ + + G++EFR+V F YP R + L+ +NL++PAGK+V LVG SGSGKST +
Sbjct: 1 DEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 59
Query: 392 LLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGK-DGASM 450
L+ RFYD EG +L+DG+ +R L LR+Q+ LV+Q LF ++ NI + + + S
Sbjct: 60 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 119
Query: 451 DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEA 510
+ + AA+ A A DFI K+ +G +T +G+ G +SGGQ+QRIAIARAL+RD IL+LDEA
Sbjct: 120 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 179
Query: 511 TSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570
TSALD +SER +Q A+D++ K RT+L+IAHRLSTI A+ I+V++ G +VE G+H+EL+
Sbjct: 180 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 239
Query: 571 RGEGGEYYQMVELQ 584
+ G Y Q+ ++Q
Sbjct: 240 Q--HGVYAQLHKMQ 251
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 294 bits (753), Expect = 8e-92
Identities = 126/255 (49%), Positives = 178/255 (69%), Gaps = 4/255 (1%)
Query: 997 QGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGL 1056
+G+ + + G +E +NV F YP R + L+ ++LKI AGKTVALVG+SG GKSTI L
Sbjct: 2 EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASL 60
Query: 1057 LERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADAR-ES 1115
+ RFYD +G + MD D+R Y L LR+ +ALVSQ LF T+ NIAY + +
Sbjct: 61 ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 120
Query: 1116 EIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEAT 1175
+I++AA +A A +FI+ M +G DT GE GV LSGGQ+QRIA+ARA+L++ IL+LDEAT
Sbjct: 121 QIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 180
Query: 1176 SALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235
SALD+ SE +Q AL+++ RT +V+AHRLSTI+++D I V+++G +VE+G+H+EL L
Sbjct: 181 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSEL--L 238
Query: 1236 SRGGAYYSLIKPQGG 1250
++ G Y L K Q G
Sbjct: 239 AQHGVYAQLHKMQFG 253
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 288 bits (739), Expect = 5e-90
Identities = 96/246 (39%), Positives = 155/246 (63%), Gaps = 5/246 (2%)
Query: 1004 QMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP 1063
+ G ++ ++V FAYP RPD ++L+GL+ + G+ ALVG +G GKST+ LL+ Y P
Sbjct: 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 66
Query: 1064 LKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYG-KADARESEIKKAAV 1122
G + +D + + Y + L +A V QEP +F +++ENIAYG EI AAV
Sbjct: 67 TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAV 126
Query: 1123 LANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVS 1182
+ AH FISG+ GYDT E G QLSGGQ+Q +ALARA+++ P +L+LD+ATSALD+ S
Sbjct: 127 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 186
Query: 1183 ESLVQEALEKMM--MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGA 1240
+ V++ L + R+ +++ LS ++++D I ++ G + E G+H +L + + G
Sbjct: 187 QLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQL--MEKKGC 244
Query: 1241 YYSLIK 1246
Y+++++
Sbjct: 245 YWAMVQ 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 284 bits (728), Expect = 2e-88
Identities = 107/245 (43%), Positives = 160/245 (65%), Gaps = 5/245 (2%)
Query: 341 VRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV 400
+ G ++F+DV F YP+RPD LVLQGL + G+ LVG +GSGKST ALLQ Y P
Sbjct: 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 67
Query: 401 EGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFG-KDGASMDDVISAAKA 459
G++LLDG + + ++L Q+ V QEP +F S+ ENI +G +M+++ +AA
Sbjct: 68 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 127
Query: 460 ANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE 519
+ AH FI+ LP GY+T+V + G Q+SGGQ+Q +A+ARALIR P +L+LD+ATSALDA S+
Sbjct: 128 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 187
Query: 520 RIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEY 577
V++ + + + R+ L+I LS + A+ I+ L+ G + E G+H +LM + G Y
Sbjct: 188 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK--KGCY 245
Query: 578 YQMVE 582
+ MV+
Sbjct: 246 WAMVQ 250
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 273 bits (700), Expect = 1e-84
Identities = 118/242 (48%), Positives = 165/242 (68%), Gaps = 2/242 (0%)
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403
+I FR++ F Y ++L +NL + G+ +G+VG SGSGKST L+QRFY P G+
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 404 VLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAH 463
VL+DG+ + WLR Q+G+V Q+ VL SI +NI G S++ VI AAK A AH
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 464 DFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQ 523
DFI++L +GY T VG+ G +SGGQ+QRIAIARAL+ +PKIL+ DEATSALD +SE ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 524 EAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVEL 583
+ K+ KGRT +IIAHRLST++ A+ I+V++ GK+VE G H EL++ E Y + +L
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE-SLYSYLYQL 238
Query: 584 QQ 585
Q
Sbjct: 239 QS 240
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 273 bits (699), Expect = 1e-84
Identities = 99/240 (41%), Positives = 151/240 (62%), Gaps = 2/240 (0%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
I +N+ F Y +IL ++L I+ G+ + +VG+SG GKST+ L++RFY P G V
Sbjct: 2 ITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHE 1128
+D D+ + LR + +V Q+ L +I +NI+ ++ AA LA AH+
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 1129 FISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQE 1188
FIS +++GY+T GE+G LSGGQ+QRIA+ARA++ NP IL+ DEATSALD SE ++
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 1189 ALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
+ K+ GRT +++AHRLST++ +D I V++ G++VEQG H EL++ Y L + Q
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS-EPESLYSYLYQLQ 239
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 273 bits (699), Expect = 2e-84
Identities = 110/241 (45%), Positives = 154/241 (63%), Gaps = 5/241 (2%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+ ++V FAY IL+ +S + + +A G SG GKSTI LLERFY P G +
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYG-KADARESEIKKAAVLANAH 1127
+D Q I N +L+ RS I VSQ+ + AGTIREN+ YG + D + ++ + LA A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
F+ M D +T GERGV++SGGQ+QR+A+ARA L+NP IL+LDEAT++LDS SES+VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1188 EALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKP 1247
+AL+ +M GRT +V+AHRLSTI +D I I+ G++ G HNEL ++ Y +
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNEL--VATHPLYAKYVSE 237
Query: 1248 Q 1248
Q
Sbjct: 238 Q 238
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 267 bits (685), Expect = 1e-82
Identities = 101/241 (41%), Positives = 151/241 (62%), Gaps = 5/241 (2%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+ R V F Y +L+ ++ + G SG GKST +LL+RFY P GE+
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDG-ASMDDVISAAKAANAH 463
+DG I + L+ RSQ+G V+Q+ + A +I EN+ +G +G + +D+ A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 464 DFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQ 523
F+ +PD T+VG+ G ++SGGQ+QR+AIARA +R+PKIL+LDEAT++LD++SE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 524 EAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVEL 583
+A+D + KGRTTL+IAHRLSTI A+ I ++ G++ SG HNEL+ Y + V
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT--HPLYAKYVSE 237
Query: 584 Q 584
Q
Sbjct: 238 Q 238
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 242 bits (619), Expect = 4e-73
Identities = 68/271 (25%), Positives = 126/271 (46%), Gaps = 21/271 (7%)
Query: 977 AVRSVFAILDRR-SEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIE 1035
+ +V A + E+ Q ++ + NV F++ +LK ++L IE
Sbjct: 4 IMENVTAFWEEGFGELLEKVQQSNGDRKH---SSDENNVSFSHLCLVGNPVLKNINLNIE 60
Query: 1036 AGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPT 1095
G+ +A+ G +G GK++++ L+ + +G + + ++ SQ
Sbjct: 61 KGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR-------------VSFCSQFSW 107
Query: 1096 LFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQR 1155
+ GTI+ENI +G E K + I+ + +T GE GV LSGGQ+ R
Sbjct: 108 IMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRAR 166
Query: 1156 IALARAILKNPSILLLDEATSALDSVSES-LVQEALEKMMMGRTCVVVAHRLSTIQKSDT 1214
I+LARA+ K+ + LLD LD +E + + + K+M +T ++V ++ ++K+D
Sbjct: 167 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADK 226
Query: 1215 IAVIKNGRVVEQGSHNELVALSRGGAYYSLI 1245
I ++ G G+ +EL S + S +
Sbjct: 227 ILILHQGSSYFYGTFSEL--QSLRPDFSSKL 255
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 237 bits (605), Expect = 4e-71
Identities = 66/288 (22%), Positives = 128/288 (44%), Gaps = 32/288 (11%)
Query: 301 ALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDT 360
+ N+TA E E++++ + D K S + F + P
Sbjct: 4 IMENVTAFWEE-----GFGELLEKVQQSNGDRK----HSSDENNVSFSHLCLVG--NP-- 50
Query: 361 LVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLR 420
VL+ +NL + G+ + + G +GSGK++ + L+ + EG + G
Sbjct: 51 -VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------ 97
Query: 421 SQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQL 480
++ +Q + +I ENI+FG S KA ITK + T +G+
Sbjct: 98 -RVSFCSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 155
Query: 481 GFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS-ERIVQEAIDKVSKGRTTLIIA 539
G +SGGQ+ RI++ARA+ +D + LLD LD + E++ + + K+ +T +++
Sbjct: 156 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 215
Query: 540 HRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYY-QMVELQQM 586
++ +R A+ I++L G G+ +EL + ++ +++
Sbjct: 216 SKMEHLRKADKILILHQGSSYFYGTFSELQSL--RPDFSSKLMGYDTF 261
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 184 bits (468), Expect = 2e-53
Identities = 69/227 (30%), Positives = 114/227 (50%), Gaps = 9/227 (3%)
Query: 1009 IELKNVFFAYPTRPDQ-MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
I+LKNV Y + LK ++L I+ G+ V+++G SG GKST++ ++ P +G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1068 VFMDEQDIRNYNLKQL----RSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAV 1122
V++D + + +L R I V Q+ L T EN+ +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1123 LANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVS 1182
A E M + + + + QLSGGQ+QR+A+ARA+ NP I+L D+ T ALDS +
Sbjct: 122 RKRALE-CLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 1183 ESLVQEALEKM--MMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQG 1227
+ + L+K+ G+T VVV H ++ + + I +K+G V +
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 175 bits (444), Expect = 4e-50
Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 9/227 (3%)
Query: 345 IEFRDVYFCYPSRPDTL-VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403
I+ ++V Y + + L+ +NL + G+ V ++G SGSGKST + ++ P EGE
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 404 VLLDGYKIRRL----HLKWLRSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAK 458
V +D K L K R ++G V Q+ L + EN+ + +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 459 AANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS 518
A + K+ + E Q+SGGQ+QR+AIARAL +P I+L D+ T ALD+++
Sbjct: 122 RKRALE-CLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 519 ERIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKVVESG 563
+ + + K+++ G+T +++ H ++ R I+ LK G+V
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 163 bits (414), Expect = 5e-46
Identities = 60/236 (25%), Positives = 109/236 (46%), Gaps = 28/236 (11%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
++L++V + L LS ++ AG+ + LVG +G GKST++ + KGS+
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSI 55
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTL-FAGTIRENIAYGKADARESEIKKAAVLANAH 1127
Q + ++ +L H A +SQ+ T FA + + + D +E+ A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-- 113
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILK-------NPSILLLDEATSALDS 1180
D G QLSGG+ QR+ LA +L+ +LLLDE ++LD
Sbjct: 114 --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 1181 VSESLVQEALEKMMM-GRTCVVVAHRLS-TIQKSDTIAVIKNGRVVEQGSHNELVA 1234
+S + + L + G V+ +H L+ T++ + ++K G+++ G E++
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 221
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 157 bits (397), Expect = 9e-44
Identities = 52/237 (21%), Positives = 110/237 (46%), Gaps = 28/237 (11%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
++ +DV ++ L L+ V AG+ + LVG +G+GKST +A + +G +
Sbjct: 4 MQLQDVA-------ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEP-VLFATSITENILFGKDGASMDDVISAAKAANAH 463
G + L ++Q+ FAT + + + + ++++ A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-- 113
Query: 464 DFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIR-------DPKILLLDEATSALDA 516
+ ++G+ Q+SGG+ QR+ +A +++ ++LLLDE ++LD
Sbjct: 114 --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 517 QSERIVQEAIDKVSK-GRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELMNR 571
+ + + + + + G ++ +H L+ T+R A+ +LK GK++ SG E++
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 160 bits (407), Expect = 4e-45
Identities = 61/230 (26%), Positives = 117/230 (50%), Gaps = 18/230 (7%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
++L+N+ + + + L+L I+ G+ + L+G SGCGK+T + ++ +P +G +
Sbjct: 7 VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAH 1127
+ ++D+ L +I++V Q ++ T+ ENIA+ + + K +
Sbjct: 64 YFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFP---LKIKKFPKDEIDKRVR 118
Query: 1128 EFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL 1185
+++ + Y QLSGGQ+QR+A+ARAI+ P +LL+DE S LD+
Sbjct: 119 WAAELLQIEELLNRYPA----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA 174
Query: 1186 VQEALEK--MMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
++ ++K + T + V H D IAV+ G++++ GS E+
Sbjct: 175 MRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 224
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 151 bits (382), Expect = 1e-41
Identities = 58/232 (25%), Positives = 109/232 (46%), Gaps = 14/232 (6%)
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403
E++ ++ + + + LNL + G+ + L+G SG GK+TT+ ++ +P EG
Sbjct: 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
Query: 404 VLLDGYKIRRLHLKWLRSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANA 462
+ +L + +V Q ++ ++ ENI F + A
Sbjct: 63 IYFGDR--DVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 120
Query: 463 HDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIV 522
+ + ++ + QL SGGQ+QR+A+ARA++ +P +LL+DE S LDA+ +
Sbjct: 121 AELL-QIEELLNRYPAQL----SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM 175
Query: 523 QEAIDKV--SKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571
+ I K+ TT+ + H T + I V+ G++++ GS E+ R
Sbjct: 176 RAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 154 bits (391), Expect = 6e-43
Identities = 75/234 (32%), Positives = 123/234 (52%), Gaps = 17/234 (7%)
Query: 1009 IELKNVFFAYPTRPDQM-ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
I+L N+ + + L +SL + AG+ ++G SG GKST+I + P +GS
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1068 VFMDEQDIRNYNLKQ---LRSHIALVSQEPTLFA-GTIRENIAYGKADARESEIKKAAVL 1123
V +D Q++ + + R I ++ Q L + T+ N+A K V
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP---LELDNTPKDEVK 118
Query: 1124 ANAHEFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSV 1181
E +S G+ D +D+Y LSGGQKQR+A+ARA+ NP +LL DEATSALD
Sbjct: 119 RRVTELLSLVGLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 1182 SESLVQEALEKM--MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
+ + E L+ + +G T +++ H + +++ D +AVI NG ++EQ + +E+
Sbjct: 175 TTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 150 bits (379), Expect = 3e-41
Identities = 70/235 (29%), Positives = 123/235 (52%), Gaps = 13/235 (5%)
Query: 345 IEFRDVYFCYPSRPDTL-VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403
I+ ++ + T+ L ++L VPAG+ G++G SG+GKST I + P EG
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 404 VLLDGYKIRRLHLKW---LRSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKA 459
VL+DG ++ L R Q+G++ Q L ++ ++ N+ + + +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 460 ANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE 519
+ L D +++ L SGGQKQR+AIARAL +PK+LL DEATSALD +
Sbjct: 122 TELLSLV-GLGDKHDSYPSNL----SGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 520 RIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571
R + E + +++ G T L+I H + ++ + + V+ G+++E + +E+ +
Sbjct: 177 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 154 bits (391), Expect = 1e-42
Identities = 63/243 (25%), Positives = 120/243 (49%), Gaps = 26/243 (10%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
++ + ++ Y +LKG+SL+ AG ++++G SG GKST + + P +G+
Sbjct: 2 KLHVIDLHKRYGGHE---VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
Query: 1068 VFMDEQDIRNYN-------------LKQLRSHIALVSQEPTLFAG-TIRENIAYGKADAR 1113
+ ++ Q+I L+ LR+ + +V Q L++ T+ EN+
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118
Query: 1114 ESEIKKAAVLANAHEFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLL 1171
+ K A ++++ G+ + G+ V LSGGQ+QR+++ARA+ P +LL
Sbjct: 119 --GLSKHDARERALKYLAKVGIDERAQ---GKYPVHLSGGQQQRVSIARALAMEPDVLLF 173
Query: 1172 DEATSALD-SVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSH 1229
DE TSALD + +++ + G+T VVV H + + S + + G++ E+G
Sbjct: 174 DEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP 233
Query: 1230 NEL 1232
++
Sbjct: 234 EQV 236
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 150 bits (381), Expect = 2e-41
Identities = 66/247 (26%), Positives = 123/247 (49%), Gaps = 28/247 (11%)
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403
++ D++ Y VL+G++L+ AG + ++G SGSGKST + + P EG
Sbjct: 2 KLHVIDLHKRYGGHE---VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
Query: 404 VLLDGYKIRRL-------------HLKWLRSQMGLVNQEPVLFAT-SITENILFG---KD 446
++++G I + L+ LR+++ +V Q L++ ++ EN++
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118
Query: 447 GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILL 506
G S D A A + + + G+ +SGGQ+QR++IARAL +P +LL
Sbjct: 119 GLSKHDARERALKYLA---KVGIDERAQ---GKYPVHLSGGQQQRVSIARALAMEPDVLL 172
Query: 507 LDEATSALDAQSERIVQEAIDKVSK-GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGS 564
DE TSALD + V + ++++ G+T +++ H + R ++ ++ L GK+ E G
Sbjct: 173 FDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 232
Query: 565 HNELMNR 571
++
Sbjct: 233 PEQVFGN 239
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 138 bits (350), Expect = 2e-37
Identities = 55/242 (22%), Positives = 110/242 (45%), Gaps = 23/242 (9%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+ +N+ + L G+S+ + G ++G +G GKST+I ++ F +G V
Sbjct: 5 LRTENIVKYFGEFK---ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 1069 FMDEQDIRNYNLKQL-RSHIALVSQEPTLFAG-TIRENIAYGKADARESEI--------- 1117
+ + +DI N +L I Q P T+ EN+ G+ ES +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 1118 -KKAAVLANAHEFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEA 1174
K+ ++ A + + + YD G +LSGGQ + + + RA++ NP ++++DE
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEP 177
Query: 1175 TSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
+ + + + ++ G T +++ HRL + D + V+ NG+++ +G E
Sbjct: 178 IAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEE 237
Query: 1233 VA 1234
+
Sbjct: 238 IK 239
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 136 bits (343), Expect = 2e-36
Identities = 57/244 (23%), Positives = 104/244 (42%), Gaps = 25/244 (10%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+ ++ + + L G+++ V G ++G +GSGKST I ++ F EG V
Sbjct: 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 405 LLDGYKIRRLHLKWL-RSQMGLVNQEPVLFAT-SITENILFG-------------KDGAS 449
+ I L + Q P ++ EN+L G
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 450 MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDE 509
+ KA +F+ KL Y+ + G+L SGGQ + + I RAL+ +PK++++DE
Sbjct: 122 PKEEEMVEKAFKILEFL-KLSHLYDRKAGEL----SGGQMKLVEIGRALMTNPKMIVMDE 176
Query: 510 ATSALDAQSERIVQEAIDKV-SKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNE 567
+ + + + ++ +KG T LII HRL + + + V+ G+++ G E
Sbjct: 177 PIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 236
Query: 568 LMNR 571
+
Sbjct: 237 EIKN 240
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 138 bits (349), Expect = 3e-37
Identities = 60/231 (25%), Positives = 115/231 (49%), Gaps = 12/231 (5%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+E + ++ Y ++G++L+VP G+ V L+G +G+GK+TT++ + +G++
Sbjct: 7 LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 405 LLDGYKIRRL-HLKWLRSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANA 462
+ +G I R + LV + +F ++ EN++ G
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK-----DKEGIKRD 118
Query: 463 HDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIV 522
++I L + ++ QLG +SGG++Q +AI RAL+ PK+L++DE + L V
Sbjct: 119 LEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 523 QEAIDKVSK-GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571
E I K+++ G T L++ A+ VL+ G++V G +EL++
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 138 bits (348), Expect = 3e-37
Identities = 60/230 (26%), Positives = 111/230 (48%), Gaps = 12/230 (5%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+E++++ Y +KG+ LK+ G+ V L+G +G GK+T + + KG +
Sbjct: 7 LEVQSLHVYYGAIH---AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1069 FMDEQDIRNYNLKQLRS-HIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANA 1126
+ QDI N + IALV + +F T+ EN+ G + ++ E K +
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-EWI 122
Query: 1127 HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
+K+ G LSGG++Q +A+ RA++ P +L++DE + L + S V
Sbjct: 123 FSLFPRLKERLKQLGG----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 1187 QEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
E ++K+ G T ++V K + V++ G++V +G +EL+
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 137 bits (347), Expect = 4e-37
Identities = 53/235 (22%), Positives = 112/235 (47%), Gaps = 16/235 (6%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+ DV+ + + ++ ++L V G+ + L+G SG GK+TT+ ++ +P G++
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 405 LLDGYKI----RRLHLKWLRSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKA 459
+ + + + + + +V Q L+ ++ +NI F + +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 460 ANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE 519
+ + L + + +L SGGQ+QR+A+ RA++R P++ L+DE S LDA+
Sbjct: 121 REVAELL-GLTELLNRKPREL----SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175
Query: 520 RIVQEAIDKV--SKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571
++ + K+ G TT+ + H T + I V+ G + + GS +E+ ++
Sbjct: 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 136 bits (343), Expect = 1e-36
Identities = 59/232 (25%), Positives = 116/232 (50%), Gaps = 16/232 (6%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
+ L +V+ + + ++ +SL+++ G+ + L+G SGCGK+T + ++ +P +G +
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1069 FMDEQDIRNYNLKQLR----SHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVL 1123
++ ++ + + IA+V Q L+ T+ +NIA+ + + +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 1124 ANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183
E + G+ + + +LSGGQ+QR+AL RAI++ P + L+DE S LD+
Sbjct: 121 REVAELL-GLTELLNRKPR----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175
Query: 1184 SLVQEALEK--MMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
++ L+K +G T + V H D IAV+ G + + GS +E+
Sbjct: 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 135 bits (341), Expect = 3e-36
Identities = 62/230 (26%), Positives = 111/230 (48%), Gaps = 18/230 (7%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
++L+NV A+ + ++ K ++L I G+ V VG SGCGKST++ ++ G +
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAH 1127
F+ E+ + + + +V Q L+ ++ EN+++G + + KK + +
Sbjct: 58 FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFG---LKLAGAKKEVINQRVN 112
Query: 1128 EFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL 1185
+ + D LSGGQ+QR+A+ R ++ PS+ LLDE S LD+
Sbjct: 113 QVAEVLQLAHLLDRKPK----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 168
Query: 1186 VQEALEK--MMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
++ + + +GRT + V H +D I V+ GRV + G EL
Sbjct: 169 MRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 218
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 132 bits (333), Expect = 3e-35
Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 14/231 (6%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
++ ++V + + +V + +NL + G+ V VG SG GKST + ++ G++
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSIT-ENILFGKDGASMDDVISAAKAANAH 463
+ ++ +G+V Q L+ EN+ FG A + +
Sbjct: 58 FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 464 DFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQ 523
+ + +L + + L SGGQ+QR+AI R L+ +P + LLDE S LDA ++
Sbjct: 116 EVL-QLAHLLDRKPKAL----SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 170
Query: 524 EAIDKV--SKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571
I ++ GRT + + H T A+ I+VL AG+V + G EL +
Sbjct: 171 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 133 bits (337), Expect = 3e-36
Identities = 41/216 (18%), Positives = 96/216 (44%), Gaps = 27/216 (12%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
++E++++ Y D+ +L+ +++ IE G V G +G GK+T++ + + PLKG
Sbjct: 2 KLEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 57
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYG----KADARESEIKKAAV 1122
+ + I +++ I + +E + ++ + + ++EI A
Sbjct: 58 IIYNGVPIT-----KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALE 112
Query: 1123 LANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVS 1182
+ ++ +LS G +R+ LA +L N I +LD+ A+D S
Sbjct: 113 SVEVLD------------LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 160
Query: 1183 ESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVI 1218
+ V +++ +++ + V+++ R + D +
Sbjct: 161 KHKVLKSILEILKEKGIVIISSR-EELSYCDVNENL 195
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 131 bits (331), Expect = 2e-35
Identities = 42/202 (20%), Positives = 96/202 (47%), Gaps = 26/202 (12%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
+E RD+ Y D VL+ + + + G V G +G GK+T + + + P++GE+
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFA-TSITENILFG----KDGASMDDVISAAKA 459
+ +G I + ++ ++ + +E ++ S+ + + + ++++ A ++
Sbjct: 59 IYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 460 ANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE 519
D KL ++S G +R+ +A L+ + +I +LD+ A+D S+
Sbjct: 114 VEVLDLKKKLG------------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 520 RIVQEAIDKVSKGRTTLIIAHR 541
V ++I ++ K + +II+ R
Sbjct: 162 HKVLKSILEILKEKGIVIISSR 183
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 134 bits (338), Expect = 7e-36
Identities = 58/229 (25%), Positives = 110/229 (48%), Gaps = 12/229 (5%)
Query: 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
G + +K++ + ILKG+S +IE G+ L+G +G GK+T + ++ P G
Sbjct: 1 GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 1067 SVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLAN 1125
V + ++ ++R I+ + +E + E + + S + ++
Sbjct: 58 IVTVFGKN-VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 1126 AHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESL 1185
A E G+ + S G +++ +ARA++ NP + +LDE TS LD ++
Sbjct: 117 ATEIA-GLGEKIKDRVS----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171
Query: 1186 VQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
V++ L++ G T +V +H + ++ D IA+I NG +VE G+ EL
Sbjct: 172 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 220
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 131 bits (331), Expect = 6e-35
Identities = 54/232 (23%), Positives = 108/232 (46%), Gaps = 12/232 (5%)
Query: 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG 402
G + +D+ + +L+G++ + G+ GL+G +G+GK+TT+ ++ P G
Sbjct: 1 GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAAN 461
V + G + +R + + +E + E + F +
Sbjct: 58 IVTVFGKNVVEE-PHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 462 AHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERI 521
A + L + + +V S G +++ IARAL+ +P++ +LDE TS LD + R
Sbjct: 117 ATEIA-GLGEKIKDRVSTY----SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171
Query: 522 VQEAIDKVSK-GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571
V++ + + S+ G T L+ +H + + + I ++ G +VE+G+ EL R
Sbjct: 172 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 124 bits (311), Expect = 2e-32
Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 18/228 (7%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IE++++ + L LSLK+E+G+ ++G +G GK+ + L+ F+ P G +
Sbjct: 2 IEIESLSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAH 1127
+ +L + IA V Q +LF +++N+ +G + + K+ A
Sbjct: 58 LL--DGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
++ D + LSGG++QR+ALARA++ NP ILLLDE SALD ++ +
Sbjct: 116 ----KIEHLLDRNP----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167
Query: 1188 EALEKM--MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
E L + T + + H + + +D IAV+ +G++++ G E+
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 117 bits (293), Expect = 5e-30
Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 24/234 (10%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV 404
IE + + L L+L+V +G+ ++G +G+GK+ + L+ F+ P G +
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLF-ATSITENILFGKDGASMDD---VISAAKAA 460
LLDG + L + + V Q LF ++ +N+ FG + D V+ A+
Sbjct: 58 LLDGKDVTDLS--PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 461 NAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER 520
+ + P +SGG++QR+A+ARAL+ +PKILLLDE SALD +++
Sbjct: 116 KIEHLLDRNP-----------LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 521 IVQEAIDKV--SKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571
+E + + T L I H + R A+ I V+ GK+++ G E+ +
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 122 bits (307), Expect = 1e-31
Identities = 63/232 (27%), Positives = 114/232 (49%), Gaps = 13/232 (5%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
RI +KNV + + + L +++ IE G+ ++G SG GK+T + ++ P G
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 1068 VFMDEQDIRNYNLKQLRSH---IALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVL 1123
++ D++ + + + I +V Q L+ T ENIA+ ++ K +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFP---LTNMKMSKEEIR 118
Query: 1124 ANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183
E + +LSG Q+QR+ALARA++K+PS+LLLDE S LD+
Sbjct: 119 KRVEEVAKIL--DIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 1184 SLVQEALEK--MMMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
+ +++ +G T +VV+H + I +D + V+ G++V+ G +L
Sbjct: 177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 115 bits (290), Expect = 2e-29
Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 13/235 (5%)
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE 403
I ++V + + + L +N+ + G+ G++G SG+GK+T + ++ P GE
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 404 VLLDGYKIRRLHLKWLRS---QMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKA 459
+ D + + ++G+V Q L+ + ENI F M +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 460 ANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE 519
+ + ++SG Q+QR+A+ARAL++DP +LLLDE S LDA+
Sbjct: 122 EEVAKIL-----DIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 520 RIVQEAIDKV--SKGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571
+ + +V G T L+++H + I A+ + VL GK+V+ G +L +
Sbjct: 177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 117 bits (294), Expect = 6e-30
Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 14/210 (6%)
Query: 1030 LSLKIEAGK-TVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088
L++ E G+ L+G +G GKS + L+ P +G V ++ DI L R I
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI--TPLPPERRGIG 73
Query: 1089 LVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQ 1147
V Q+ LF ++ NIAYG + E + I+ + D + +
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-------RKPAR 126
Query: 1148 LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEK--MMMGRTCVVVAHR 1205
LSGG++QR+ALARA++ P +LLLDE SA+D ++ ++ E L + V H
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
Query: 1206 LSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234
L +D +AV+ NGR+VE+G EL +
Sbjct: 187 LIEAAMLADEVAVMLNGRIVEKGKLKELFS 216
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 110 bits (276), Expect = 1e-27
Identities = 62/211 (29%), Positives = 99/211 (46%), Gaps = 14/211 (6%)
Query: 366 LNLRVPAGKS-VGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424
LN+ G+ L+G +G+GKS + L+ P GEV L+G I L R +G
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIG 73
Query: 425 LVNQEPVLFATSIT-ENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQ 483
V Q+ LF NI +G + + I L D +
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK-------PAR 126
Query: 484 MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHR 541
+SGG++QR+A+ARAL+ P++LLLDE SA+D +++ ++ E + V + L + H
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
Query: 542 LSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571
L A+ + V+ G++VE G EL +
Sbjct: 187 LIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 101 bits (251), Expect = 4e-25
Identities = 16/191 (8%), Positives = 39/191 (20%), Gaps = 29/191 (15%)
Query: 1040 VALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAG 1099
+ + G+ G GK+T++ + + +E + I ++ +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 1100 TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALA 1159
G + + A
Sbjct: 63 FFTSKKLVG-----------------------------SYGVNVQYFEELAIPILERAYR 93
Query: 1160 RAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIK 1219
A ++++DE + V I +
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 1220 NGRVVEQGSHN 1230
++E N
Sbjct: 154 GAVLIELTPEN 164
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 95.1 bits (235), Expect = 6e-23
Identities = 19/191 (9%), Positives = 43/191 (22%), Gaps = 29/191 (15%)
Query: 376 VGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFAT 435
+ + G G GK+T + + + + + + ++ + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 436 SITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIA 495
T L G G ++ F+ A
Sbjct: 63 FFTSKKLVGSYGVNVQY-----------------------------FEELAIPILERAYR 93
Query: 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLK 555
A K++++DE + + I L
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 556 AGKVVESGSHN 566
++E N
Sbjct: 154 GAVLIELTPEN 164
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 68.0 bits (164), Expect = 1e-12
Identities = 54/319 (16%), Positives = 125/319 (39%), Gaps = 5/319 (1%)
Query: 672 WRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLF 731
RL P ++ IA I + A + L+ F +S + L
Sbjct: 5 RRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGF---GKTDRSVLLWMPLV 61
Query: 732 FLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARL 791
+G+ +L I+S + Y S + K+ +R +L G +M + +FD++ +
Sbjct: 62 VIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRIT- 120
Query: 792 ATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVL 851
++ V S + +V+ + +I+ SW+L+++++ + P+V + +
Sbjct: 121 -YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKR 179
Query: 852 MKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYS 911
+S++ + + + A + + H+ + F Q+ F + + + +K S
Sbjct: 180 FRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 239
Query: 912 GIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDI 971
I Q + + A + + +T + F ++ + ++ +
Sbjct: 240 SISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQF 299
Query: 972 SKGSNAVRSVFAILDRRSE 990
+G A +++FAILD E
Sbjct: 300 QRGMAACQTLFAILDSEQE 318
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 58.0 bits (138), Expect = 2e-09
Identities = 44/321 (13%), Positives = 98/321 (30%), Gaps = 11/321 (3%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLR 66
L+ K ++ I I + M+ +L +++D + S L
Sbjct: 7 LWPTI-APFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRS---------VLL 56
Query: 67 LLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVV 126
+ + + + + S + ++ L + +T ++
Sbjct: 57 WMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLL 116
Query: 127 STISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPGLLF 186
S I+ DS + + + + ++ + F SW+LS+ + L + + +
Sbjct: 117 SRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVV 176
Query: 187 GKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQG 246
K + M + G AEQ + + V + + RF K G+K
Sbjct: 177 SKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 236
Query: 247 FIKGLLMGSMGMIYVGWAFQA-WVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNL 305
+ + +I + S+ G+I V S+I +
Sbjct: 237 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVN 296
Query: 306 TAITEAKVAATRIFEMVDRTP 326
A +F ++D
Sbjct: 297 AQFQRGMAACQTLFAILDSEQ 317
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 67.2 bits (162), Expect = 3e-12
Identities = 40/322 (12%), Positives = 91/322 (28%), Gaps = 6/322 (1%)
Query: 673 RLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTL---- 728
R L+ P I I + + + I K L
Sbjct: 4 RYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAI 63
Query: 729 SLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAIC 788
+ ++ ++ Y K+ +R+KL L ++
Sbjct: 64 GIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISR 123
Query: 789 ARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSR 848
E + + + + + + L +LTL + + P I + Y
Sbjct: 124 VINDVEQTKDF--ILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 849 NVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHS 908
++ + + +A E E V + +F+ + F + +LKH+
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241
Query: 909 WYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMT 968
++ + + G L IT L L + +
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASF 301
Query: 969 SDISKGSNAVRSVFAILDRRSE 990
+ +++ ++ VF ++D +
Sbjct: 302 TTLTQSFASMDRVFQLIDEDYD 323
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 54.9 bits (130), Expect = 3e-08
Identities = 55/326 (16%), Positives = 109/326 (33%), Gaps = 14/326 (4%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVD---KY 63
++ K + I I L+ ++ + I+ N + +
Sbjct: 5 YLQFV-KPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAI 63
Query: 64 TLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTF 123
+ L I F+ T+ + +R + + F+ +
Sbjct: 64 GIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQV-----G 118
Query: 124 QVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSFILSWRLSLAALPLTLMFIVPG 183
QV+S + ND + I + N T L F L +L+LAAL + +I+
Sbjct: 119 QVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTV 178
Query: 184 LLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGI 243
+F + + + ++ G + V I V S+ E F + +
Sbjct: 179 YVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRAL 238
Query: 244 KQGFIKGL-LMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSI--FVAGVSIIMGGLSVLG 300
K + +G VG+YL G++ FV + ++ G L L
Sbjct: 239 KHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLV 298
Query: 301 ALPNLTAITEAKVAATRIFEMVDRTP 326
A T +T++ + R+F+++D
Sbjct: 299 AS--FTTLTQSFASMDRVFQLIDEDY 322
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (121), Expect = 1e-07
Identities = 18/153 (11%), Positives = 38/153 (24%), Gaps = 5/153 (3%)
Query: 1038 KTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLF 1097
+ V L G G GK+T+I V + +++ + +S
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 1098 AGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKD-----GYDTYCGERGVQLSGGQ 1152
+ E + + + D G + ++
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 1153 KQRIALARAILKNPSILLLDEATSALDSVSESL 1185
+ I R L P ++L +
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLALV 154
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 6e-07
Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 5/139 (3%)
Query: 374 KSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLF 433
+ V L G G GK+T I V + R + + + ++
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 434 ATSITENILFGKD---GASMDDVISAAKAANAHDFITKLPD--GYETQVGQLGFQMSGGQ 488
+ E ++ G + D+ S + A G V +M
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 489 KQRIAIARALIRDPKILLL 507
+ I R + P ++L
Sbjct: 122 QLFIQAVRQTLSTPGTIIL 140
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 38.8 bits (89), Expect = 0.001
Identities = 19/106 (17%), Positives = 27/106 (25%), Gaps = 2/106 (1%)
Query: 1036 AGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPT 1095
G + L G G GKSTI L V D+ Y S +
Sbjct: 3 GGNILLLSGHPGSGKSTIAEALANLPG--VPKVHFHSDDLWGYIKHGRIDPWLPQSHQQN 60
Query: 1096 LFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYC 1141
I ++A A I V + + +
Sbjct: 61 RMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIV 106
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.3 bits (90), Expect = 0.003
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 482 FQMSGGQKQRIAI----ARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLI 537
+SGG+K A+ A + +LDE +ALD + + + I + I
Sbjct: 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390
Query: 538 -IAHRLSTIRTAN-LIMVLKAGKVVES 562
I+ + + ++ L+ V + + S
Sbjct: 391 VISLKNTMFEKSDALVGVYRQQQENSS 417
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 37.7 bits (86), Expect = 0.003
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 1037 GKTVALVGQSGCGKSTIIGLLERFYDPLKGSVF 1069
G+ V L G S GKST++ L L SV
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVS 34
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1255 | |||
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 100.0 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.97 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.96 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.95 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.75 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.67 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.53 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.41 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.36 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.28 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.19 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.18 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.02 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.92 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.79 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.55 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.01 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.67 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.48 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.24 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.13 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.08 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.01 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.96 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.83 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.83 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.74 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.71 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.65 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.63 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.56 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.44 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.44 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.43 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.43 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.4 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.33 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.31 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.24 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.18 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.16 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.16 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.07 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.96 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 94.9 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.86 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.84 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.73 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.73 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.72 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.69 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.65 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.64 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.6 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.55 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.5 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.46 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.45 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.42 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.27 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.25 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.25 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.13 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.08 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 93.96 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.89 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.87 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 93.78 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.77 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.75 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.74 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.62 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.61 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 93.6 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.59 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.55 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.51 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.49 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.45 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.4 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.39 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.35 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.33 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.32 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.29 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.18 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.1 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.1 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.09 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.09 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.09 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.01 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.95 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.9 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 92.88 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.83 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.81 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.69 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.67 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.59 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 92.59 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.55 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 92.51 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.4 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.36 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 92.31 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.29 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 92.28 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.19 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.14 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.08 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 92.05 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.03 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.02 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.01 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.01 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 92.0 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 91.94 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.92 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.88 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 91.85 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 91.84 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.84 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 91.79 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.76 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 91.74 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 91.69 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 91.65 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.61 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.56 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.51 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 91.51 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.4 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.25 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.09 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.05 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 91.02 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 90.98 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.98 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 90.96 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.87 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.86 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 90.85 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.85 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 90.85 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 90.85 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.74 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.67 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.65 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.57 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 90.53 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 90.45 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 90.4 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 90.38 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 90.33 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 90.32 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.28 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 90.27 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 90.2 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 90.11 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 90.1 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 90.07 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 89.99 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 89.95 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 89.95 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 89.79 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 89.78 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.78 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 89.76 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.72 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 89.71 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 89.64 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 89.61 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.6 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 89.6 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 89.6 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.59 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.48 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 89.47 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 89.46 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 89.46 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 89.42 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.41 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 89.41 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 89.34 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.33 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 89.32 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 89.32 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.31 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 89.28 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 89.22 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 89.08 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 88.97 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.94 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.89 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 88.88 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 88.87 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 88.83 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 88.82 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 88.79 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 88.79 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 88.7 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.7 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 88.7 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 88.7 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.65 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 88.63 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 88.63 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 88.62 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 88.61 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 88.57 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.56 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 88.41 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.41 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 88.4 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 88.34 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 88.31 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 88.28 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 88.27 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 88.25 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 88.22 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 88.2 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 88.18 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.17 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 88.15 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 88.11 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 88.05 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 88.02 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 87.98 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 87.98 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 87.95 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 87.89 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 87.88 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 87.85 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 87.78 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 87.7 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 87.6 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 87.59 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 87.51 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 87.51 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.48 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.41 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.4 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 87.33 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 87.3 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 87.3 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 87.19 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 87.07 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 87.01 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 87.0 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 86.99 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 86.97 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 86.87 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 86.86 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 86.85 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.82 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 86.77 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 86.64 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 86.64 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 86.57 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 86.53 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.41 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 86.31 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.31 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.29 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 86.24 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 86.21 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 86.2 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 86.17 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 86.14 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 86.08 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 86.08 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 85.97 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 85.9 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 85.81 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 85.8 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 85.77 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 85.76 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 85.67 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 85.67 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 85.64 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 85.61 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 85.61 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 85.55 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 85.55 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 85.53 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 85.4 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 85.38 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 85.37 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 85.37 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 85.36 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 85.36 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 85.34 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 85.3 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 85.28 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 85.25 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 85.16 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 85.15 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 85.07 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 85.05 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 84.94 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 84.93 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 84.91 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 84.6 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 84.55 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 84.55 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 84.44 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 84.43 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 84.38 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 84.36 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 84.36 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 84.33 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 84.26 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 84.25 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 83.96 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 83.9 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 83.81 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 83.78 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 83.73 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.67 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 83.59 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 83.48 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 83.44 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 83.32 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 83.28 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 83.28 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 83.24 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 83.19 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 83.17 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 83.08 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 83.06 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 83.02 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 82.88 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 82.86 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 82.79 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 82.78 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 82.61 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 82.56 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 82.5 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 82.37 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 82.31 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 82.28 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 82.27 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 82.13 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 82.07 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 82.02 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 81.94 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 81.71 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 81.65 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 81.62 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 81.59 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 81.55 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 81.51 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 81.39 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 81.24 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 81.19 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 81.12 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 81.06 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 81.05 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 80.85 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 80.69 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 80.69 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 80.54 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 80.4 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 80.35 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 80.34 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 80.21 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=523.49 Aligned_cols=242 Identities=51% Similarity=0.811 Sum_probs=234.5
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 66528998788988999887541130589728969999959999788999998412689986699899506898988873
Q 000846 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLR 1084 (1255)
Q Consensus 1005 ~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr 1084 (1255)
..|.|+|+||+|+|+.+ ++++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++..++|
T Consensus 13 ~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 78879999889995999-97606443899839989999889998099999999712786300015399875307888863
Q ss_pred CCEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 23088805787873228999823998879889999999961999997050012342389999999479999999999704
Q 000846 1085 SHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILK 1164 (1255)
Q Consensus 1085 ~~i~~V~Q~~~LF~gTIreNl~~g~~~~~~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll~ 1164 (1255)
++++||||+|.+|++||+|||++|++..+++++++|++.+++++++..+|+||||.++++|.+||||||||+|||||+++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHHHCCCHHHHH
Q ss_conf 99888973667898979799999999986099769998159136641287999959899882597789833039655898
Q 000846 1165 NPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSL 1244 (1255)
Q Consensus 1165 ~p~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~~i~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l 1244 (1255)
+|+|||||||||+||++|+..|.+.|+++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||++. ++.|++|
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~--~~~y~~l 249 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK--QGAYEHL 249 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT--TSHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC--CCHHHHH
T ss_conf 99899983765447977999999999987538889999689999985999999989999998899999868--8499999
Q ss_pred HHHHC
Q ss_conf 71113
Q 000846 1245 IKPQG 1249 (1255)
Q Consensus 1245 ~~~~~ 1249 (1255)
|+.|.
T Consensus 250 ~~~Q~ 254 (255)
T d2hyda1 250 YSIQN 254 (255)
T ss_dssp HTTTT
T ss_pred HHHCC
T ss_conf 99747
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=517.65 Aligned_cols=240 Identities=41% Similarity=0.698 Sum_probs=232.3
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 28998788988999887541130589728969999959999788999998412689986699899506898988873230
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i 1087 (1255)
+|+|+||+|+|+.+ ++++|+||||+|++||++||||+||||||||+++|+|+++|++|+|++||.|++.++..++|+++
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 88805787873228999823998879889999999961999997050012342389999999479999999999704998
Q 000846 1088 ALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPS 1167 (1255)
Q Consensus 1088 ~~V~Q~~~LF~gTIreNl~~g~~~~~~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll~~p~ 1167 (1255)
+||||+|.+|++||+|||.++.+..++++++++++.+++.+++..+|+|++|.++++|.+||||||||+|||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHHHCCCHHHHHHHH
Q ss_conf 88973667898979799999999986099769998159136641287999959899882597789833039655898711
Q 000846 1168 ILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKP 1247 (1255)
Q Consensus 1168 ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~~i~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~ 1247 (1255)
|||||||||+||+.+++.|.+.++++.+++|+|+||||++.++.||||+||++|+|+|.|+|++|+++ +++.|++||+.
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~-~~~~y~~l~~~ 238 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQL 238 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCCHHHHHHHH
T ss_conf 35564776555989999999999998589989999788999984999999989999998899999829-98789999998
Q ss_pred HC
Q ss_conf 13
Q 000846 1248 QG 1249 (1255)
Q Consensus 1248 ~~ 1249 (1255)
|.
T Consensus 239 Q~ 240 (241)
T d2pmka1 239 QS 240 (241)
T ss_dssp HC
T ss_pred HC
T ss_conf 13
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=509.64 Aligned_cols=242 Identities=51% Similarity=0.796 Sum_probs=232.6
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 66528998788988999887541130589728969999959999788999998412689986699899506898988873
Q 000846 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLR 1084 (1255)
Q Consensus 1005 ~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr 1084 (1255)
..|.|+|+||+|+|+++ +.++|+||||+|++||++|||||||||||||+++|+|+++|++|+|++||.|+++++...+|
T Consensus 10 ~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r 88 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 88 (253)
T ss_dssp CCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred CCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHH
T ss_conf 83079999889992999-97635332899859999999999998599999998621688846898788012111066542
Q ss_pred CCEEEECCCCCCCCCCHHHHHHCCCC-CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 23088805787873228999823998-87988999999996199999705001234238999999947999999999970
Q 000846 1085 SHIALVSQEPTLFAGTIRENIAYGKA-DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAIL 1163 (1255)
Q Consensus 1085 ~~i~~V~Q~~~LF~gTIreNl~~g~~-~~~~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll 1163 (1255)
++++||||+|.+|++|+++|+.++.+ ..++++++++++.+++.+++..+|+||||.++++|.+|||||||||||||||+
T Consensus 89 ~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred HEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 06879950254478620243320572208999999999998179999735544101434888984999999999999995
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHHHCCCHHHH
Q ss_conf 49988897366789897979999999998609976999815913664128799995989988259778983303965589
Q 000846 1164 KNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYS 1243 (1255)
Q Consensus 1164 ~~p~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~~i~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~ 1243 (1255)
++|+|||||||||+||+.++..|++.|+++.+++|+|+||||++.+..||+|+||++|+|+|.|+|+||++. ++.|++
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~--~~~y~~ 246 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ--HGVYAQ 246 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH--TSSHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC--CCHHHH
T ss_conf 499889951644458988999999999875227889999887999985999999989999998899999868--939999
Q ss_pred HHHHHC
Q ss_conf 871113
Q 000846 1244 LIKPQG 1249 (1255)
Q Consensus 1244 l~~~~~ 1249 (1255)
||+.|-
T Consensus 247 l~~~Q~ 252 (253)
T d3b60a1 247 LHKMQF 252 (253)
T ss_dssp HHHHTC
T ss_pred HHHHCC
T ss_conf 999725
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=506.43 Aligned_cols=242 Identities=40% Similarity=0.738 Sum_probs=230.1
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 56652899878898899988754113058972896999995999978899999841268998669989950689898887
Q 000846 1004 QMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL 1083 (1255)
Q Consensus 1004 ~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l 1083 (1255)
..+|.|+|+||+|+||++++.++|+||||+|++||++|||||||||||||+++|.|+|+|++|+|++||.|+++++...+
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HCCEEEECCCCCCCCCCHHHHHHCCC-CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 32308880578787322899982399-88798899999999619999970500123423899999994799999999997
Q 000846 1084 RSHIALVSQEPTLFAGTIRENIAYGK-ADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAI 1162 (1255)
Q Consensus 1084 r~~i~~V~Q~~~LF~gTIreNl~~g~-~~~~~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAl 1162 (1255)
|++++||||+|.+|++|++||+.++. +..++++++++++.+++.+++..+|+|+++.++++|.+||||||||+|||||+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHHHCCCH
Q ss_conf 049988897366789897979999999998609--976999815913664128799995989988259778983303965
Q 000846 1163 LKNPSILLLDEATSALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGA 1240 (1255)
Q Consensus 1163 l~~p~ILiLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~~i~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~ 1240 (1255)
+++|+|+|||||||+||+.++..|++.|+++.+ ++|+|+||||++.+..||||+||++|+|++.|+|+||++. ++.
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~--~~~ 244 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK--KGC 244 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH--TSH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC--CCH
T ss_conf 568707871675765685368999999999765069899999597999985999999989999998899999859--758
Q ss_pred HHHHHHH
Q ss_conf 5898711
Q 000846 1241 YYSLIKP 1247 (1255)
Q Consensus 1241 y~~l~~~ 1247 (1255)
|++||+.
T Consensus 245 y~~l~~A 251 (251)
T d1jj7a_ 245 YWAMVQA 251 (251)
T ss_dssp HHHHHCC
T ss_pred HHHHHCC
T ss_conf 8999629
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=503.89 Aligned_cols=237 Identities=47% Similarity=0.737 Sum_probs=228.3
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 89987889889998875411305897289699999599997889999984126899866998995068989888732308
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i~ 1088 (1255)
|+++||+|+|++ ++++|+||||+|++||++|||||||||||||+++|+|+++|++|+|++||.|+++++...+|++|+
T Consensus 2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCC--CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 799988998799--984142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCCCCCHHHHHHCCC-CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 880578787322899982399-8879889999999961999997050012342389999999479999999999704998
Q 000846 1089 LVSQEPTLFAGTIRENIAYGK-ADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPS 1167 (1255)
Q Consensus 1089 ~V~Q~~~LF~gTIreNl~~g~-~~~~~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll~~p~ 1167 (1255)
||||+|.+|++|++||+.++. +..++++++++++.+++.+++..+|+++++.++++|.+||||||||+|||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHHHCCCHHHHHHHH
Q ss_conf 88973667898979799999999986099769998159136641287999959899882597789833039655898711
Q 000846 1168 ILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKP 1247 (1255)
Q Consensus 1168 ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~~i~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~ 1247 (1255)
|||||||||+||+.++..|++.|+++.+++|+|+||||++.+..||||+||++|+|++.|+|+||++. ++.|++||+.
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~--~~~y~~l~~~ 237 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT--HPLYAKYVSE 237 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH--CHHHHHHHHC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC--CHHHHHHHHH
T ss_conf 99965886556988999998878887179989999787999984999999989999999999999868--9699999999
Q ss_pred HC
Q ss_conf 13
Q 000846 1248 QG 1249 (1255)
Q Consensus 1248 ~~ 1249 (1255)
|.
T Consensus 238 Q~ 239 (242)
T d1mv5a_ 238 QL 239 (242)
T ss_dssp CC
T ss_pred HH
T ss_conf 85
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=475.10 Aligned_cols=246 Identities=48% Similarity=0.818 Sum_probs=234.0
Q ss_pred CCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH
Q ss_conf 67876530999958998699999965111038861997999985999818999999961667996389999961688898
Q 000846 337 ALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHL 416 (1255)
Q Consensus 337 ~~~~~~~~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~ 416 (1255)
+.....|+|+|+||+|+|++. ..++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.|+++++.
T Consensus 9 pl~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~ 87 (255)
T d2hyda1 9 PIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT 87 (255)
T ss_dssp CCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCH
T ss_pred CCCCCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCH
T ss_conf 777778879999889995999-9760644389983998999988999809999999971278630001539987530788
Q ss_pred HHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 88724238864677667101899860499999999899999993469999609885201003899988948999999999
Q 000846 417 KWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIAR 496 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lAR 496 (1255)
.++|++++||+|+|++|++||+|||.+|.++.++++++++++.+++++++..+|+|++|.++++|.+||||||||++|||
T Consensus 88 ~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iAR 167 (255)
T d2hyda1 88 GSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 167 (255)
T ss_dssp HHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHH
T ss_pred HHHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHH
T ss_conf 88634145651015689987999985158679999999999996979999736242010333888984999999999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCCH
Q ss_conf 86129987898277889998979999999998608983999814920443039899996998988259368860388874
Q 000846 497 ALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGE 576 (1255)
Q Consensus 497 al~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 576 (1255)
|++++|+|+|||||||+||++++..+.+.+..+.+++|+|+||||++.+..||+|++|++|++++.|+|+||+++ ++.
T Consensus 168 al~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~--~~~ 245 (255)
T d2hyda1 168 IFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK--QGA 245 (255)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT--TSH
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC--CCH
T ss_conf 985599899983765447977999999999987538889999689999985999999989999998899999868--849
Q ss_pred HHHHHHHHH
Q ss_conf 599999986
Q 000846 577 YYQMVELQQ 585 (1255)
Q Consensus 577 ~~~~~~~~~ 585 (1255)
|+++++.|.
T Consensus 246 y~~l~~~Q~ 254 (255)
T d2hyda1 246 YEHLYSIQN 254 (255)
T ss_dssp HHHHHTTTT
T ss_pred HHHHHHHCC
T ss_conf 999999747
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=467.31 Aligned_cols=240 Identities=49% Similarity=0.807 Sum_probs=230.3
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCC
Q ss_conf 09999589986999999651110388619979999859998189999999616679963899999616888988872423
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 423 (1255)
+|+|+||+|+|+.. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||.|+..++..++|+++
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 88646776671018998604999999998999999934699996098852010038999889489999999998612998
Q 000846 424 GLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPK 503 (1255)
Q Consensus 424 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~~~~ 503 (1255)
+||+|+|++|++||+|||.++.++.+++++..+++.+++.+++..+|+|++|.++++|.+||||||||++||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCCHHHHHHHH
Q ss_conf 78982778899989799999999986089839998149204430398999969989882593688603888745999999
Q 000846 504 ILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVEL 583 (1255)
Q Consensus 504 ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 583 (1255)
|+|||||||+||+.+++.+.+.+.++.+++|+|+|||+++.+..||+|++|++|+|++.|+|+||+++ .++.|..+++.
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~-~~~~y~~l~~~ 238 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQL 238 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCCHHHHHHHH
T ss_conf 35564776555989999999999998589989999788999984999999989999998899999829-98789999998
Q ss_pred HH
Q ss_conf 86
Q 000846 584 QQ 585 (1255)
Q Consensus 584 ~~ 585 (1255)
|.
T Consensus 239 Q~ 240 (241)
T d2pmka1 239 QS 240 (241)
T ss_dssp HC
T ss_pred HC
T ss_conf 13
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=463.76 Aligned_cols=246 Identities=49% Similarity=0.787 Sum_probs=233.0
Q ss_pred CCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH
Q ss_conf 67876530999958998699999965111038861997999985999818999999961667996389999961688898
Q 000846 337 ALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHL 416 (1255)
Q Consensus 337 ~~~~~~~~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~ 416 (1255)
..+...|.|+|+||+|+|+.+ +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||.++++++.
T Consensus 6 ~~~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~ 84 (253)
T d3b60a1 6 VIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL 84 (253)
T ss_dssp CCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCH
T ss_pred CCCCCCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHH
T ss_conf 067783079999889992999-9763533289985999999999999859999999862168884689878801211106
Q ss_pred HHHHCCCEEECCCCCCCCCCHHHHHCCCCC-CCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHH
Q ss_conf 887242388646776671018998604999-9999989999999346999960988520100389998894899999999
Q 000846 417 KWLRSQMGLVNQEPVLFATSITENILFGKD-GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIA 495 (1255)
Q Consensus 417 ~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lA 495 (1255)
.++|++++||+|+|++|++|+++|+.++.+ ..+++++.++++.++++++++.+|+|++|.++++|.+||||||||++||
T Consensus 85 ~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiA 164 (253)
T d3b60a1 85 ASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 164 (253)
T ss_dssp HHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred HHHHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 65420687995025447862024332057220899999999999817999973554410143488898499999999999
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCC
Q ss_conf 98612998789827788999897999999999860898399981492044303989999699898825936886038887
Q 000846 496 RALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGG 575 (1255)
Q Consensus 496 Ral~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 575 (1255)
||++++|+|+|||||||+||+.++..+.+.|.++.+++|+|+|||+++.+..||+|++|++|+|++.|+|+||+++ ++
T Consensus 165 Ral~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~--~~ 242 (253)
T d3b60a1 165 RALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ--HG 242 (253)
T ss_dssp HHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH--TS
T ss_pred HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC--CC
T ss_conf 9995499889951644458988999999999875227889999887999985999999989999998899999868--93
Q ss_pred HHHHHHHHHH
Q ss_conf 4599999986
Q 000846 576 EYYQMVELQQ 585 (1255)
Q Consensus 576 ~~~~~~~~~~ 585 (1255)
.|+++++.|.
T Consensus 243 ~y~~l~~~Q~ 252 (253)
T d3b60a1 243 VYAQLHKMQF 252 (253)
T ss_dssp SHHHHHHHTC
T ss_pred HHHHHHHHCC
T ss_conf 9999999725
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=457.40 Aligned_cols=241 Identities=44% Similarity=0.775 Sum_probs=227.5
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 76530999958998699999965111038861997999985999818999999961667996389999961688898887
Q 000846 340 YVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL 419 (1255)
Q Consensus 340 ~~~~~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~ 419 (1255)
..+|.|+|+||+|+||++++..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++..++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HCCCEEECCCCCCCCCCHHHHHCCCCC-CCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 242388646776671018998604999-9999989999999346999960988520100389998894899999999986
Q 000846 420 RSQMGLVNQEPVLFATSITENILFGKD-GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARAL 498 (1255)
Q Consensus 420 r~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal 498 (1255)
|++++||+|+|++|++||+||+.++.. ....+++..+++.++++++++.+|+|++|.++++|.+||||||||++||||+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCCH
Q ss_conf 129987898277889998979999999998608--983999814920443039899996998988259368860388874
Q 000846 499 IRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGE 576 (1255)
Q Consensus 499 ~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 576 (1255)
+++|+|+|||||||+||+.++..+++.+.++.+ ++|+|+|||+++.+..||+|++|++|+|+++|+|+||+++ ++.
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~--~~~ 244 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK--KGC 244 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH--TSH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC--CCH
T ss_conf 568707871675765685368999999999765069899999597999985999999989999998899999859--758
Q ss_pred HHHHHH
Q ss_conf 599999
Q 000846 577 YYQMVE 582 (1255)
Q Consensus 577 ~~~~~~ 582 (1255)
|+.|++
T Consensus 245 y~~l~~ 250 (251)
T d1jj7a_ 245 YWAMVQ 250 (251)
T ss_dssp HHHHHC
T ss_pred HHHHHC
T ss_conf 899962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=453.85 Aligned_cols=236 Identities=42% Similarity=0.707 Sum_probs=224.1
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 99995899869999996511103886199799998599981899999996166799638999996168889888724238
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 424 (1255)
|+++||+|+|++. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||.++++++.+.+|++|+
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 7999889987999--84142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCCCCCHHHHHCCCCC-CCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 8646776671018998604999-999998999999934699996098852010038999889489999999998612998
Q 000846 425 LVNQEPVLFATSITENILFGKD-GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPK 503 (1255)
Q Consensus 425 ~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~~~~ 503 (1255)
||+|+|++|++||+||+.++.. ...+++++++++.+.+.+++..+|++++|.++++|.+||||||||++||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCCHHHHHHHH
Q ss_conf 78982778899989799999999986089839998149204430398999969989882593688603888745999999
Q 000846 504 ILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVEL 583 (1255)
Q Consensus 504 ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 583 (1255)
|+|||||||+||+.++..+++.+.++.+++|+|+|||+++.+..||+|++|++|+|++.|+|+||+++ ++.|++++..
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~--~~~y~~l~~~ 237 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT--HPLYAKYVSE 237 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH--CHHHHHHHHC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC--CHHHHHHHHH
T ss_conf 99965886556988999998878887179989999787999984999999989999999999999868--9699999999
Q ss_pred H
Q ss_conf 8
Q 000846 584 Q 584 (1255)
Q Consensus 584 ~ 584 (1255)
|
T Consensus 238 Q 238 (242)
T d1mv5a_ 238 Q 238 (242)
T ss_dssp C
T ss_pred H
T ss_conf 8
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=419.33 Aligned_cols=220 Identities=29% Similarity=0.464 Sum_probs=201.2
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC
Q ss_conf 65289987889889998875411305897289699999599997889999984126899866998995068989888732
Q 000846 1006 RGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS 1085 (1255)
Q Consensus 1006 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~ 1085 (1255)
.+.|.|+|++|.+ +|+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 36 ~~~i~~~~~~~~g-----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------- 97 (281)
T d1r0wa_ 36 ENNVSFSHLCLVG-----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 97 (281)
T ss_dssp ----CHHHHHHTT-----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------
T ss_pred CCCEEEEECCCCC-----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------
T ss_conf 8967999769899-----7677375999859999999989998299999999579747882899999-------------
Q ss_pred CEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 30888057878732289998239988798899999999619999970500123423899999994799999999997049
Q 000846 1086 HIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKN 1165 (1255)
Q Consensus 1086 ~i~~V~Q~~~LF~gTIreNl~~g~~~~~~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll~~ 1165 (1255)
+++|+||++.+|++|++||+.++. ..++.+.+++++.+.+.+++..+|+++++.++++|.+||||||||+||||||+++
T Consensus 98 ~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~ 176 (281)
T d1r0wa_ 98 RVSFCSQFSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD 176 (281)
T ss_dssp CEEEECSSCCCCSEEHHHHHTTTS-CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCCCEEECCCCCCC-CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf 999981643026760321420333-4560579999999776999984612332355554237799999999999999869
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHHHCCCHHHHH
Q ss_conf 988897366789897979999999-9986099769998159136641287999959899882597789833039655898
Q 000846 1166 PSILLLDEATSALDSVSESLVQEA-LEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSL 1244 (1255)
Q Consensus 1166 p~ILiLDEaTS~LD~~te~~I~~~-l~~~~~~~TvI~IaHrl~~i~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l 1244 (1255)
|+|||||||||+||+.++..+.+. +....+++|+|+||||++.++.||||++|++|++++.|+|+||++. ++.|++.
T Consensus 177 p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~--~~~~~~~ 254 (281)
T d1r0wa_ 177 ADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL--RPDFSSK 254 (281)
T ss_dssp CSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH--CHHHHHH
T ss_pred CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCC--CCHHHHH
T ss_conf 63513338554489899999999999886289999999252899985999999989999998789999605--9489998
Q ss_pred HH
Q ss_conf 71
Q 000846 1245 IK 1246 (1255)
Q Consensus 1245 ~~ 1246 (1255)
+.
T Consensus 255 ~~ 256 (281)
T d1r0wa_ 255 LM 256 (281)
T ss_dssp HH
T ss_pred HC
T ss_conf 72
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.4e-45 Score=375.65 Aligned_cols=223 Identities=28% Similarity=0.462 Sum_probs=191.8
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 28998788988999887541130589728969999959999788999998412689986699899506898988873230
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i 1087 (1255)
.|+++|++++|+ +..+|+||||+|++||.+||+||||||||||++++.|+++|++|+|++||.|++..+.. |++|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf 499987999999---99998130678879989999999998299999999758999878799916413547700--0158
Q ss_pred EEECCCCCCCC-CCHHHHHHCCCC--CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 88805787873-228999823998--879889999999961999997050012342389999999479999999999704
Q 000846 1088 ALVSQEPTLFA-GTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILK 1164 (1255)
Q Consensus 1088 ~~V~Q~~~LF~-gTIreNl~~g~~--~~~~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll~ 1164 (1255)
|||||++.+|. .|++||+.++.. ..+.++..+. +.++.+.+ |++.........||||||||++|||||..
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~ 153 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 153 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHH-----HHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHC--CCHHHHCCCHHHCCHHHHHHHHHHHHHCC
T ss_conf 998003353422209999999998739999999999-----99999875--98556609954699999889999766404
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHHHCCCHH
Q ss_conf 998889736678989797999999999860--99769998159136641-287999959899882597789833039655
Q 000846 1165 NPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVALSRGGAY 1241 (1255)
Q Consensus 1165 ~p~ILiLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~~i~~-~DrI~vl~~G~ive~G~~~eLl~~~~~g~y 1241 (1255)
+|+||+||||||+||+.+...+++.++++. .|+|+|+|||+++.+.. ||||++|++|+|++.|+|+++.++ +...|
T Consensus 154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~-P~~~~ 232 (239)
T d1v43a3 154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR-PNSVF 232 (239)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC-CSBHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCCHH
T ss_conf 99824306886668989998999999999873198079994899999986999999989999998599999868-99989
Q ss_pred HH
Q ss_conf 89
Q 000846 1242 YS 1243 (1255)
Q Consensus 1242 ~~ 1243 (1255)
-+
T Consensus 233 ~~ 234 (239)
T d1v43a3 233 VA 234 (239)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=380.29 Aligned_cols=218 Identities=28% Similarity=0.518 Sum_probs=188.4
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 89987889889998875411305897289699999599997889999984126899866998995068989888732308
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i~ 1088 (1255)
|+++||+++|. +..+|+||||+|++||.+||+||||||||||++++.|+++|++|+|++||.++...+. .|++||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEE
T ss_pred CEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEE
T ss_conf 99999999989---9999811177886998999998999829999999965878888889999997788864--443222
Q ss_pred EECCCCCCCCC-CHHHHHHCCCC--CCC----HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88057878732-28999823998--879----889999999961999997050012342389999999479999999999
Q 000846 1089 LVSQEPTLFAG-TIRENIAYGKA--DAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARA 1161 (1255)
Q Consensus 1089 ~V~Q~~~LF~g-TIreNl~~g~~--~~~----~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARA 1161 (1255)
||||+|.+|.. |++||+.++.. ..+ ++++.++++..++.++.. .....||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~-----------~~~~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHH-----------CCHHHCCHHHHHHHHHHHH
T ss_conf 34334202643337889789998759988999999999997578865664-----------8965699999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHHHCC
Q ss_conf 704998889736678989797999999999860--99769998159136641-287999959899882597789833039
Q 000846 1162 ILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVALSRG 1238 (1255)
Q Consensus 1162 ll~~p~ILiLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~~i~~-~DrI~vl~~G~ive~G~~~eLl~~~~~ 1238 (1255)
|+.+|++|+|||||++||+.+...|++.++++. .|+|+|+|||+++.+.. ||||++|++|++++.|+|+++++. +.
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~-P~ 223 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY-PA 223 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS-CS
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC-CC
T ss_conf 70399889975888788988998999999999874298799994899999996999999979999998089999738-99
Q ss_pred CHHHH
Q ss_conf 65589
Q 000846 1239 GAYYS 1243 (1255)
Q Consensus 1239 g~y~~ 1243 (1255)
..|-+
T Consensus 224 ~~~v~ 228 (232)
T d2awna2 224 DRFVA 228 (232)
T ss_dssp BHHHH
T ss_pred CHHHH
T ss_conf 97999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=379.87 Aligned_cols=215 Identities=29% Similarity=0.485 Sum_probs=187.3
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 89987889889998875411305897289699999599997889999984126899866998995068989888732308
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i~ 1088 (1255)
|+++||+++|. + .+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|++||.|+++++.. |++++
T Consensus 2 i~v~nlsk~y~---~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWK---N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECS---S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEEC---C-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf 89998999949---9-788433789879989999989998299999999647688878899956734652165--74056
Q ss_pred EECCCCCCCCC-CHHHHHHCCCC---CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 88057878732-28999823998---879889999999961999997050012342389999999479999999999704
Q 000846 1089 LVSQEPTLFAG-TIRENIAYGKA---DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILK 1164 (1255)
Q Consensus 1089 ~V~Q~~~LF~g-TIreNl~~g~~---~~~~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll~ 1164 (1255)
||||++.||.. |++||+.++.. ....+++.++++..++.+ ........||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH-----------LLDRNPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTT-----------TTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHH-----------HHHCCHHHCCHHHHCCHHHHHHHHC
T ss_conf 15121111746657788888776405538999999999825655-----------5758955479998401403043443
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHHHCCCHH
Q ss_conf 998889736678989797999999999860--99769998159136641-287999959899882597789833039655
Q 000846 1165 NPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVALSRGGAY 1241 (1255)
Q Consensus 1165 ~p~ILiLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~~i~~-~DrI~vl~~G~ive~G~~~eLl~~~~~g~y 1241 (1255)
+|++||||||||+||+.+...+++.++++. .+.|+|+|||+++.+.. ||||++|++|++++.|+|++++++ +...|
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~-P~~~~ 223 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK-PVEGR 223 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS-CCTTH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCCHH
T ss_conf 67714434787679989999999999999864796899974999999996999999979999998699999868-99879
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=384.38 Aligned_cols=217 Identities=27% Similarity=0.459 Sum_probs=195.1
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 30999958998699999965111038861997999985999818999999961667996389999961688898887242
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ 422 (1255)
Q Consensus 343 ~~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~ 422 (1255)
..|.|+|++|. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 37 ~~i~~~~~~~~-----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 37 NNVSFSHLCLV-----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ---CHHHHHHT-----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCEEEEECCCC-----CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 96799976989-----97677375999859999999989998299999999579747882899999-------------9
Q ss_pred CEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 38864677667101899860499999999899999993469999609885201003899988948999999999861299
Q 000846 423 MGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDP 502 (1255)
Q Consensus 423 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~~~ 502 (1255)
++|++|+|++|++||+|||.++.. ....+...+++.+.+.+++..+|+++++.++++|.+||||||||++||||++++|
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p 177 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCCCEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 999816430267603214203334-5605799999997769999846123323555542377999999999999998696
Q ss_pred CEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCCHHHHH
Q ss_conf 87898277889998979999999-9986089839998149204430398999969989882593688603888745999
Q 000846 503 KILLLDEATSALDAQSERIVQEA-IDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQM 580 (1255)
Q Consensus 503 ~ililDe~ts~lD~~~~~~i~~~-i~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 580 (1255)
+|+|||||||+||+.++..+.+. +....+++|+|+|||+++.+..||+|++|++|++++.|+|+||+.. .+.|...
T Consensus 178 ~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~--~~~~~~~ 254 (281)
T d1r0wa_ 178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL--RPDFSSK 254 (281)
T ss_dssp SEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH--CHHHHHH
T ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCC--CCHHHHH
T ss_conf 3513338554489899999999999886289999999252899985999999989999998789999605--9489998
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=380.08 Aligned_cols=220 Identities=27% Similarity=0.485 Sum_probs=187.4
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----H
Q ss_conf 289987889889998875411305897289699999599997889999984126899866998995068989888----7
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ----L 1083 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~----l 1083 (1255)
.|+++||+++|. +..+|+||||+|++||.+||+||||||||||++++.|+++|++|+|.+||.++...+... .
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 189986999989---99998560668869989999999998099999999648788989899999980356644424532
Q ss_pred HCCEEEECCCCCCCCC-CHHHHHHCCCC--CCCHHH----HHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 3230888057878732-28999823998--879889----9999999619999970500123423899999994799999
Q 000846 1084 RSHIALVSQEPTLFAG-TIRENIAYGKA--DARESE----IKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRI 1156 (1255)
Q Consensus 1084 r~~i~~V~Q~~~LF~g-TIreNl~~g~~--~~~~~~----i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrl 1156 (1255)
|+++++|||+|.||+. |++||+.++.. ..+.++ +.+.++..++. .........||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~-----------~~~~~~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-----------ELLNRKPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-----------GGTTCCGGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-----------HHHCCCHHHCCHHHHHHH
T ss_conf 255120022122231011667633068772999899999999999875996-----------676299334999999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999704998889736678989797999999999860-9-9769998159136641-2879999598998825977898
Q 000846 1157 ALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-M-GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1157 alARAll~~p~ILiLDEaTS~LD~~te~~I~~~l~~~~-~-~~TvI~IaHrl~~i~~-~DrI~vl~~G~ive~G~~~eLl 1233 (1255)
+|||||+.+|+||+|||||++||+.+...|++.++++. + |.|+|+|||+++.+.. ||||++|++|+|++.|+|+|++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999826998898258876569899989999999998636988999959999999969999999899999985999998
Q ss_pred HHHCCCHHH
Q ss_conf 330396558
Q 000846 1234 ALSRGGAYY 1242 (1255)
Q Consensus 1234 ~~~~~g~y~ 1242 (1255)
++ +...|-
T Consensus 229 ~~-P~~~~~ 236 (240)
T d1g2912 229 DK-PANTFV 236 (240)
T ss_dssp HS-CSBHHH
T ss_pred HC-CCCHHH
T ss_conf 28-999898
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.4e-45 Score=376.93 Aligned_cols=222 Identities=28% Similarity=0.441 Sum_probs=189.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHH
Q ss_conf 289987889889998875411305897289699999599997889999984126899866998995068989---88873
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN---LKQLR 1084 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~---~~~lr 1084 (1255)
.|+++||+++|+.+ +..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+...+ ....|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred CCEEEECCCCCCCCC-CHHHHHHCCCC--CCCHHH----HHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 230888057878732-28999823998--879889----99999996199999705001234238999999947999999
Q 000846 1085 SHIALVSQEPTLFAG-TIRENIAYGKA--DARESE----IKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIA 1157 (1255)
Q Consensus 1085 ~~i~~V~Q~~~LF~g-TIreNl~~g~~--~~~~~~----i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrla 1157 (1255)
+++|||+|++.||+. |++||+.++.. ..+.++ +.++++.+ |++.........||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~-----------gL~~~~~~~p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL-----------DIHHVLNHFPRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHT-----------TCGGGTTSCGGGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------CHHHHHHCCHHHCCHHHHHHHH
T ss_conf 45147730433466665777766556761379999999999998665-----------9176664895459999985899
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9999704998889736678989797999999999860--99769998159136641-28799995989988259778983
Q 000846 1158 LARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1158 lARAll~~p~ILiLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~~i~~-~DrI~vl~~G~ive~G~~~eLl~ 1234 (1255)
|||||..+|+||++|||||+||+.+...+++.|+++. .|.|+|+|||+++.+.. ||||++|++|+|++.|+|+++++
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 87577604661454478667998998899899999986359879999799999999699999998999999869999986
Q ss_pred HHCCCHHH
Q ss_conf 30396558
Q 000846 1235 LSRGGAYY 1242 (1255)
Q Consensus 1235 ~~~~g~y~ 1242 (1255)
. +...|-
T Consensus 231 ~-P~~~~~ 237 (242)
T d1oxxk2 231 N-PVSIQV 237 (242)
T ss_dssp S-CSSHHH
T ss_pred C-CCCHHH
T ss_conf 8-999799
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=379.66 Aligned_cols=222 Identities=31% Similarity=0.471 Sum_probs=188.6
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 899878898899988-75411305897289699999599997889999984126899866998995068989888---73
Q 000846 1009 IELKNVFFAYPTRPD-QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQ---LR 1084 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~---lr 1084 (1255)
|+++||++.|+.+.. ..||+||||+|++||.+||+||||||||||++++.|+.+|++|+|.+||.|+...+... +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCEEEECCCCCCCCC-CHHHHHHCCC--CCCC----HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 230888057878732-2899982399--8879----88999999996199999705001234238999999947999999
Q 000846 1085 SHIALVSQEPTLFAG-TIRENIAYGK--ADAR----ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIA 1157 (1255)
Q Consensus 1085 ~~i~~V~Q~~~LF~g-TIreNl~~g~--~~~~----~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrla 1157 (1255)
+++|+|||++.+|.. |++||+.++. ...+ .+++.+.++.+++. .........||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~-----------~~~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-----------DKHDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTT-----------TTTSSCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-----------HHHHCCHHHCCHHHHHHHH
T ss_conf 16643022522279964999999999984999899999999999976990-----------3554894349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9999704998889736678989797999999999860-9-9769998159136641-28799995989988259778983
Q 000846 1158 LARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-M-GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVA 1234 (1255)
Q Consensus 1158 lARAll~~p~ILiLDEaTS~LD~~te~~I~~~l~~~~-~-~~TvI~IaHrl~~i~~-~DrI~vl~~G~ive~G~~~eLl~ 1234 (1255)
|||||..+|++|||||||++||+.+...|++.|+++. + |.|+|+|||+++.+.. ||||++|++|+|++.|+|+++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred HHCCCHHH
Q ss_conf 30396558
Q 000846 1235 LSRGGAYY 1242 (1255)
Q Consensus 1235 ~~~~g~y~ 1242 (1255)
. +...|.
T Consensus 231 ~-P~~~~t 237 (240)
T d3dhwc1 231 H-PKTPLA 237 (240)
T ss_dssp S-SCCTTT
T ss_pred C-CCCHHH
T ss_conf 8-998577
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.8e-45 Score=373.46 Aligned_cols=214 Identities=32% Similarity=0.500 Sum_probs=177.0
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 899878898899988-754113058972896999995999978899999841268998669989950689898887----
Q 000846 1009 IELKNVFFAYPTRPD-QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL---- 1083 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l---- 1083 (1255)
|+++||+++|+.+.. ..+|+|+||+|++||.+||+||||||||||++++.|+++|++|+|++||.++..++...+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCEEEECCCCCCCCC-CHHHHHHCCC-----CCCCHHHHHH-HHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 3230888057878732-2899982399-----8879889999-9999619999970500123423899999994799999
Q 000846 1084 RSHIALVSQEPTLFAG-TIRENIAYGK-----ADARESEIKK-AAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRI 1156 (1255)
Q Consensus 1084 r~~i~~V~Q~~~LF~g-TIreNl~~g~-----~~~~~~~i~~-al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrl 1156 (1255)
|++||||+|+|.+|+. |++||+.++. +..+.++..+ +.+.. +. ..+++. .......+||||||||+
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l---~~-~~L~~~---~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECL---KM-AELEER---FANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHH---HH-TTCCGG---GTTCCGGGSCHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HH-HCHHHH---HHCCCHHHCCHHHHHHH
T ss_conf 555778804124176866888775788872247899999999999988---76-242345---53488023899999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 99999704998889736678989797999999999860--99769998159136641287999959899882597
Q 000846 1157 ALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSH 1229 (1255)
Q Consensus 1157 alARAll~~p~ILiLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~~i~~~DrI~vl~~G~ive~G~~ 1229 (1255)
+|||||..+|+||+||||||+||+.+...|++.++++. .|+|+|+|||+++.++.||||++|++|+|++.|++
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.2e-45 Score=371.18 Aligned_cols=225 Identities=28% Similarity=0.472 Sum_probs=187.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC--------
Q ss_conf 289987889889998875411305897289699999599997889999984126899866998995068989--------
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN-------- 1079 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~-------- 1079 (1255)
.|+++|++++|. +..||+||||+|++||.+||+|+||||||||+++|.|+++|++|+|++||.++...+
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 699997899989---99988150668869979999989998299999999747667899779999993367752000023
Q ss_pred -----HHHHHCCEEEECCCCCCCC-CCHHHHHHCCC---CCCCHH----HHHHHHHHHCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf -----8887323088805787873-22899982399---887988----9999999961999997050012342389999
Q 000846 1080 -----LKQLRSHIALVSQEPTLFA-GTIRENIAYGK---ADARES----EIKKAAVLANAHEFISGMKDGYDTYCGERGV 1146 (1255)
Q Consensus 1080 -----~~~lr~~i~~V~Q~~~LF~-gTIreNl~~g~---~~~~~~----~i~~al~~a~l~~~i~~lp~gldt~ige~G~ 1146 (1255)
...+|+++++|+|+|.+|. -|++||+.++. ...+.+ .+.++++.+++.+... .....
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~p~ 148 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ----------GKYPV 148 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHH----------TSCGG
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH----------CCCCC
T ss_conf 51767999745448998332314110102136565787629998999999999999829952443----------06822
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEE
Q ss_conf 999479999999999704998889736678989797999999999860-99769998159136641-2879999598998
Q 000846 1147 QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVV 1224 (1255)
Q Consensus 1147 ~LSgGQrQrlalARAll~~p~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~~i~~-~DrI~vl~~G~iv 1224 (1255)
.|||||+||++|||||..+|++|||||||++||+.+...|++.|+++. +|+|+|+|||+++.+.. ||||+||.+|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 05677888989999984399878852455568878888998765541036883389948999999869999999799999
Q ss_pred EECCHHHHHHHHCCCHHH-HHHH
Q ss_conf 825977898330396558-9871
Q 000846 1225 EQGSHNELVALSRGGAYY-SLIK 1246 (1255)
Q Consensus 1225 e~G~~~eLl~~~~~g~y~-~l~~ 1246 (1255)
+.|+|++++++ +...|. +++.
T Consensus 229 ~~g~~~ev~~~-P~~~~~~~ll~ 250 (258)
T d1b0ua_ 229 EEGDPEQVFGN-PQSPRLQQFLK 250 (258)
T ss_dssp EEECHHHHHHS-CCSHHHHHHHH
T ss_pred EECCHHHHHHC-CCCHHHHHHHH
T ss_conf 98499999838-99999999881
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.2e-43 Score=357.77 Aligned_cols=227 Identities=26% Similarity=0.411 Sum_probs=190.8
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 52899878898899988754113058972896999995999978899999841268998669989950689898887323
Q 000846 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086 (1255)
Q Consensus 1007 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~ 1086 (1255)
|.|+++|++++|. ++.+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.|+.+ ....+|++
T Consensus 1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCEEEEEEEEEEC---CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHHH
T ss_conf 9789995899999---9999806256884897999999999999999999966988788879998672446-83988721
Q ss_pred EEEECCCCCCCCC-CHHHHHHCCCC--CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 0888057878732-28999823998--87988999999996199999705001234238999999947999999999970
Q 000846 1087 IALVSQEPTLFAG-TIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAIL 1163 (1255)
Q Consensus 1087 i~~V~Q~~~LF~g-TIreNl~~g~~--~~~~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll 1163 (1255)
++||||++.+|.. |++||+.+... ..+..++.+..+.. .+.+ +++....+....||||||||++||||++
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHHC--CCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 86750015468786677888989986179989999999999-----9867--9788885045337998989999999986
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHHHCCCHH
Q ss_conf 4998889736678989797999999999860-99769998159136641-287999959899882597789833039655
Q 000846 1164 KNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVALSRGGAY 1241 (1255)
Q Consensus 1164 ~~p~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~~i~~-~DrI~vl~~G~ive~G~~~eLl~~~~~g~y 1241 (1255)
.+|+||+|||||++||+.+...+++.++++. .|+|+|++||+++.+.. ||||++|++|++++.|+|+++.++.+....
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~~~~~ 229 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNI 229 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTCSSH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCCHH
T ss_conf 59998873379889798999999999999996599899995989999996999999989999999289999865287669
Q ss_pred HHH
Q ss_conf 898
Q 000846 1242 YSL 1244 (1255)
Q Consensus 1242 ~~l 1244 (1255)
.+.
T Consensus 230 ~~~ 232 (238)
T d1vpla_ 230 EEV 232 (238)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.1e-43 Score=360.38 Aligned_cols=219 Identities=27% Similarity=0.431 Sum_probs=185.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-C
Q ss_conf 289987889889998875411305897289699999599997889999984126899866998995068989888732-3
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS-H 1086 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~-~ 1086 (1255)
-|+++|++++|. +..+|+||||+|++||.+||+||||||||||++++.|+++|++|+|++||.|+...+.+..++ .
T Consensus 6 ~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 799961899989---98888302578889979999999998599999999678888803898424434466088888742
Q ss_pred EEEECCCCCCCCC-CHHHHHHCCCC-CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 0888057878732-28999823998-879889999999961999997050012342389999999479999999999704
Q 000846 1087 IALVSQEPTLFAG-TIRENIAYGKA-DARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILK 1164 (1255)
Q Consensus 1087 i~~V~Q~~~LF~g-TIreNl~~g~~-~~~~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll~ 1164 (1255)
++++||++.+|+. |++||+.++.. ....+...+.++.+- +. + .+++.........||||||||++|||||+.
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~--~~---~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF--SL---F-PRLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHH--HH---C-HHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH--HH---H-HCHHHHHHCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 35567655457763699999988873278889999999999--87---4-176888758543389999999999999982
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 998889736678989797999999999860-99769998159136641-287999959899882597789833
Q 000846 1165 NPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1165 ~p~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~~i~~-~DrI~vl~~G~ive~G~~~eLl~~ 1235 (1255)
+|++|+|||||++||+.+...+++.|+++. +|+|+|+++|+++.+.. ||||++|++|++++.|+|++++++
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 9987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7.8e-44 Score=361.38 Aligned_cols=218 Identities=23% Similarity=0.427 Sum_probs=184.3
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC-
Q ss_conf 2899878898899988754113058972896999995999978899999841268998669989950689898887323-
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH- 1086 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~- 1086 (1255)
-++++||+++|. +..||+||||+|++||.+||+||||||||||+++|.|+++|++|+|+++|.|+...+..+.++.
T Consensus 4 iL~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 699977899979---96887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEECCCCCCCC-CCHHHHHHCCCCC---------------CCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf 088805787873-2289998239988---------------798899999999619999970500123423899999994
Q 000846 1087 IALVSQEPTLFA-GTIRENIAYGKAD---------------ARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSG 1150 (1255)
Q Consensus 1087 i~~V~Q~~~LF~-gTIreNl~~g~~~---------------~~~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSg 1150 (1255)
|+++||+|.+|. -|++||+.++... ..+++..+ .+.+.++.+ +++........+|||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE-----KAFKILEFL--KLSHLYDRKAGELSG 153 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHH-----HHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHH-----HHHHHHHHC--CCCHHCCCCHHHCCC
T ss_conf 8725776424788742321430133303450456654213532899999-----999998761--963020595356991
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECC
Q ss_conf 79999999999704998889736678989797999999999860-99769998159136641-28799995989988259
Q 000846 1151 GQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGS 1228 (1255)
Q Consensus 1151 GQrQrlalARAll~~p~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~~i~~-~DrI~vl~~G~ive~G~ 1228 (1255)
|||||++||||+..+|++|||||||++||+.+.+.+++.|+++. +|+|+|+|+|+++.+.. ||||+||++|++++.|+
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 88889999999975927232439765699999999999999999789989999476999998699999996998999966
Q ss_pred HHHHHHH
Q ss_conf 7789833
Q 000846 1229 HNELVAL 1235 (1255)
Q Consensus 1229 ~~eLl~~ 1235 (1255)
|+|+.+.
T Consensus 234 ~~e~~~~ 240 (254)
T d1g6ha_ 234 GEEEIKN 240 (254)
T ss_dssp SHHHHHH
T ss_pred HHHHHHC
T ss_conf 8998654
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=8.5e-42 Score=345.17 Aligned_cols=217 Identities=28% Similarity=0.432 Sum_probs=188.7
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCC
Q ss_conf 09999589986999999651110388619979999859998189999999616679963899999616888988872423
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||++++.|+++|++|+|.++|+++..++.. +++|
T Consensus 6 ~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf 4999879999999---9998130678879989999999998299999999758999878799916413547700--0158
Q ss_pred EEECCCCCCCCC-CHHHHHCCCCC--CCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 886467766710-18998604999--999998999999934699996098852010038999889489999999998612
Q 000846 424 GLVNQEPVLFAT-SITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIR 500 (1255)
Q Consensus 424 ~~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~ 500 (1255)
|||+|+|.+|.. ||+||+.++.. ..+.+++.+. +.+.++.+ |++.........||||||||++|||||..
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~ 153 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 153 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHH-----HHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHC--CCHHHHCCCHHHCCHHHHHHHHHHHHHCC
T ss_conf 998003353422209999999998739999999999-----99999875--98556609954699999889999766404
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHH-HHCCEEEEEECCEEEEECCHHHHHCCC
Q ss_conf 998789827788999897999999999860-8-98399981492044-303989999699898825936886038
Q 000846 501 DPKILLLDEATSALDAQSERIVQEAIDKVS-K-GRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNRG 572 (1255)
Q Consensus 501 ~~~ililDe~ts~lD~~~~~~i~~~i~~~~-~-~~t~i~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 572 (1255)
+|+|++||||||+||+.+...+++.+.++. + |+|+|++||++..+ ..||+|++|++|++++.|+++|+..+.
T Consensus 154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 998243068866689899989999999998731980799948999999869999999899999985999998689
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=6.2e-42 Score=346.23 Aligned_cols=221 Identities=29% Similarity=0.484 Sum_probs=184.9
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 89987889889998875411305897289699999599997889999984126899866998995068989888732308
Q 000846 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088 (1255)
Q Consensus 1009 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i~ 1088 (1255)
+++ ++..+|. + ..+ |+||+++ +|.+||+||||||||||+++|.|+++|++|+|.+||.|+..++.. |++||
T Consensus 3 l~v-~~~k~~g---~-~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLG---N-FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEET---T-EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEEC---C-EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCE
T ss_conf 999-9999989---9-999-9999749-979999979998099999999739998962899999998869989--92852
Q ss_pred EECCCCCCCCC-CHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 88057878732-28999823998879889999999961999997050012342389999999479999999999704998
Q 000846 1089 LVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPS 1167 (1255)
Q Consensus 1089 ~V~Q~~~LF~g-TIreNl~~g~~~~~~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll~~p~ 1167 (1255)
||||++.||+. |++||+.++....+..+..+ .+.+.++.+ |++.........||||||||++||||++.+|+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~-----~v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ 146 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDR-----RVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHH-----HHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EECCCHHHCCCCHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHC--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 25231443522015576665323367788999-----999999863--83756657944489999899999877751677
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHHHCCCHHHHH
Q ss_conf 889736678989797999999999860--99769998159136641-287999959899882597789833039655898
Q 000846 1168 ILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVALSRGGAYYSL 1244 (1255)
Q Consensus 1168 ILiLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~~i~~-~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l 1244 (1255)
+|+||||||+||+.+...+++.++++. .+.|+|+|||+++.+.. ||||++|++|++++.|+|+++++. ++.+.+++
T Consensus 147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~-~~~~v~~f 225 (240)
T d2onka1 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA-KNGEVAEF 225 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS-CCSSHHHH
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCC-CCHHHHHH
T ss_conf 06752865558879999999999999874397699981899999996999999989999999069998329-98899998
Q ss_pred HH
Q ss_conf 71
Q 000846 1245 IK 1246 (1255)
Q Consensus 1245 ~~ 1246 (1255)
+.
T Consensus 226 l~ 227 (240)
T d2onka1 226 LS 227 (240)
T ss_dssp GG
T ss_pred HC
T ss_conf 57
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=3.3e-42 Score=348.41 Aligned_cols=211 Identities=31% Similarity=0.515 Sum_probs=183.9
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 99995899869999996511103886199799998599981899999996166799638999996168889888724238
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 424 (1255)
|+++|++++|++ .+|+|+||++++||+++|+|||||||||++++|.|+.+|++|+|.++|.++.+++.. |+++|
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf 899989999499----788433789879989999989998299999999647688878899956734652165--74056
Q ss_pred EECCCCCCCCC-CHHHHHCCCCC---CCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 86467766710-18998604999---999998999999934699996098852010038999889489999999998612
Q 000846 425 LVNQEPVLFAT-SITENILFGKD---GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIR 500 (1255)
Q Consensus 425 ~v~Q~~~lf~~-ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~ 500 (1255)
||+|++.+|.. ||+||+.++.. ....+++.++++..++ ..........||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI-----------EHLLDRNPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTC-----------TTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-----------HHHHHCCHHHCCHHHHCCHHHHHHHHC
T ss_conf 151211117466577888887764055389999999998256-----------555758955479998401403043443
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHH-HCCEEEEEECCEEEEECCHHHHHCCC
Q ss_conf 998789827788999897999999999860--8983999814920443-03989999699898825936886038
Q 000846 501 DPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNRG 572 (1255)
Q Consensus 501 ~~~ililDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 572 (1255)
+|+++|||||||+||+.+...+++.+.++. .|.|+|++||+++.+. .||+|++|++|++++.|+++|+.++.
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P 219 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 677144347876799899999999999998647968999749999999969999999799999986999998689
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-42 Score=347.79 Aligned_cols=211 Identities=29% Similarity=0.448 Sum_probs=182.0
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 99995899869999996511103886199799998599981899999996166799638999996168889888724238
Q 000846 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 345 i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 424 (1255)
|+++|++++|+. ..+|+|+||++++||+++|+||||||||||++++.|+++|++|+|.++|+++.+.+.. +++||
T Consensus 1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEE
T ss_conf 999999999899---9998111778869989999989998299999999658788888899999977888644--43222
Q ss_pred EECCCCCCCCC-CHHHHHCCCCCC--CC----HHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 86467766710-189986049999--99----998999999934699996098852010038999889489999999998
Q 000846 425 LVNQEPVLFAT-SITENILFGKDG--AS----MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARA 497 (1255)
Q Consensus 425 ~v~Q~~~lf~~-ti~~Ni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARa 497 (1255)
||+|+|.+|.. |++||+.++... .+ .+++.+.++..++.+ ........||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-----------~~~~~~~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-----------LLDRKPKALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-----------HHHCCHHHCCHHHHHHHHHHHH
T ss_conf 34334202643337889789998759988999999999997578865-----------6648965699999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHCC
Q ss_conf 612998789827788999897999999999860--89839998149204430-398999969989882593688603
Q 000846 498 LIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 498 l~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 571 (1255)
|+.+|++++|||||++||+.+...+++.+.++. .|+|+|++||++..+.. ||||++|++|++++.|+++|+.++
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 70399889975888788988998999999999874298799994899999996999999979999998089999738
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1e-41 Score=344.51 Aligned_cols=221 Identities=28% Similarity=0.452 Sum_probs=186.8
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHH
Q ss_conf 099995899869999996511103886199799998599981899999996166799638999996168889---88872
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH---LKWLR 420 (1255)
Q Consensus 344 ~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~---~~~~r 420 (1255)
.|+++|++++|+.. +..+|+|+||++++||.++|+||||||||||+++|.|+++|++|+|.++|.++...+ ....|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred CCCEEECCCCCCCCC-CHHHHHCCCCC--CCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 423886467766710-18998604999--999998999999934699996098852010038999889489999999998
Q 000846 421 SQMGLVNQEPVLFAT-SITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARA 497 (1255)
Q Consensus 421 ~~i~~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARa 497 (1255)
+++|||+|+|.||.. ||+|||.++.. ..+.++..+.+ .+.++.+ |++.........||||||||++||||
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v-----~~~l~~~--gL~~~~~~~p~~LSGGqkQRvaiARa 154 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV-----EEVAKIL--DIHHVLNHFPRELSGAQQQRVALARA 154 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHH-----HHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH-----HHHHHHC--CHHHHHHCCHHHCCHHHHHHHHHHHH
T ss_conf 4514773043346666577776655676137999999999-----9998665--91766648954599999858998757
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHH-HHCCEEEEEECCEEEEECCHHHHHCCC
Q ss_conf 612998789827788999897999999999860-8-98399981492044-303989999699898825936886038
Q 000846 498 LIRDPKILLLDEATSALDAQSERIVQEAIDKVS-K-GRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNRG 572 (1255)
Q Consensus 498 l~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~-~-~~t~i~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 572 (1255)
|..+|+++++|||||+||+.+...+++.++++. + |.|+|++||+++.+ ..||+|++|++|++++.|+++|+..+.
T Consensus 155 L~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P 232 (242)
T d1oxxk2 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (242)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 760466145447866799899889989999998635987999979999999969999999899999986999998689
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.4e-41 Score=343.55 Aligned_cols=215 Identities=25% Similarity=0.431 Sum_probs=183.5
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----H
Q ss_conf 099995899869999996511103886199799998599981899999996166799638999996168889888----7
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW----L 419 (1255)
Q Consensus 344 ~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~----~ 419 (1255)
.|+++|++++|++ ..+++|+||++++||+++|+|||||||||++++|.|+++|++|+|.++|.++...+... .
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 1899869999899---9998560668869989999999998099999999648788989899999980356644424532
Q ss_pred HCCCEEECCCCCCCCC-CHHHHHCCCCC--CCCHHH----HHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHH
Q ss_conf 2423886467766710-18998604999--999998----9999999346999960988520100389998894899999
Q 000846 420 RSQMGLVNQEPVLFAT-SITENILFGKD--GASMDD----VISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRI 492 (1255)
Q Consensus 420 r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~~~----~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri 492 (1255)
|+++|||+|+|.+|.. ||+||+.++.. ..+.++ +.+.++..+ +..........||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~-----------l~~~~~~~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLG-----------LTELLNRKPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-----------CGGGTTCCGGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-----------CHHHHCCCHHHCCHHHHHHH
T ss_conf 2551200221222310116676330687729998999999999998759-----------96676299334999999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 99998612998789827788999897999999999860-8-9839998149204430-3989999699898825936886
Q 000846 493 AIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-K-GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVESGSHNELM 569 (1255)
Q Consensus 493 ~lARal~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~-~-~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 569 (1255)
+|||||..+|++++|||||++||+.+...+++.+.++. + |.|+|++||+++.+.. ||+|++|++|++++.|+++|+.
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999826998898258876569899989999999998636988999959999999969999999899999985999998
Q ss_pred CCC
Q ss_conf 038
Q 000846 570 NRG 572 (1255)
Q Consensus 570 ~~~ 572 (1255)
.+.
T Consensus 229 ~~P 231 (240)
T d1g2912 229 DKP 231 (240)
T ss_dssp HSC
T ss_pred HCC
T ss_conf 289
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.9e-42 Score=345.87 Aligned_cols=216 Identities=31% Similarity=0.516 Sum_probs=183.9
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 999958998699999-96511103886199799998599981899999996166799638999996168889888---72
Q 000846 345 IEFRDVYFCYPSRPD-TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKW---LR 420 (1255)
Q Consensus 345 i~~~~v~f~y~~~~~-~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~---~r 420 (1255)
|+++|++++|+.+.. ..+|+|+||++++||.++|+||||||||||+++|.|+.+|++|+|.++|.++..++.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCCEEECCCCCCCCC-CHHHHHCCCCC--CCC----HHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHH
Q ss_conf 423886467766710-18998604999--999----99899999993469999609885201003899988948999999
Q 000846 421 SQMGLVNQEPVLFAT-SITENILFGKD--GAS----MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIA 493 (1255)
Q Consensus 421 ~~i~~v~Q~~~lf~~-ti~~Ni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~ 493 (1255)
+++|||+|++.+|.. ||+||+.++.. ..+ .+++.+.++..++ ..........||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL-----------~~~~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL-----------GDKHDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHST-----------TTTTSSCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-----------CHHHHCCHHHCCHHHHHHHH
T ss_conf 1664302252227996499999999998499989999999999997699-----------03554894349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHH-HCCEEEEEECCEEEEECCHHHHHC
Q ss_conf 9998612998789827788999897999999999860-8-983999814920443-039899996998988259368860
Q 000846 494 IARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-K-GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMN 570 (1255)
Q Consensus 494 lARal~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~-~-~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 570 (1255)
|||||..+|+++|+||||++||+.+...+++.+.++. + |.|+|++||++..+. .||||++|++|++++.|+++|+.+
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred C
Q ss_conf 3
Q 000846 571 R 571 (1255)
Q Consensus 571 ~ 571 (1255)
+
T Consensus 231 ~ 231 (240)
T d3dhwc1 231 H 231 (240)
T ss_dssp S
T ss_pred C
T ss_conf 8
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.9e-42 Score=346.42 Aligned_cols=214 Identities=31% Similarity=0.467 Sum_probs=176.5
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 999958998699999-965111038861997999985999818999999961667996389999961688898887----
Q 000846 345 IEFRDVYFCYPSRPD-TLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL---- 419 (1255)
Q Consensus 345 i~~~~v~f~y~~~~~-~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~---- 419 (1255)
|+++|++++|+.... ..+|+|+||++++||.++|+||||||||||++++.|+++|++|+|.++|.++..++.+.+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCCEEECCCCCCCCC-CHHHHHCCCC-----CCCCHHHHHHHHHHHCHHHHHHCCCCCCCC-HHCCCCCCCCHHHHHHH
Q ss_conf 2423886467766710-1899860499-----999999899999993469999609885201-00389998894899999
Q 000846 420 RSQMGLVNQEPVLFAT-SITENILFGK-----DGASMDDVISAAKAANAHDFITKLPDGYET-QVGQLGFQMSGGQKQRI 492 (1255)
Q Consensus 420 r~~i~~v~Q~~~lf~~-ti~~Ni~~~~-----~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t-~i~~~g~~LSgGqkqri 492 (1255)
|++||||+|+|.++.. ||+||+.++. ...+.++..+.+ .+.++.+ |+.. .......+||||||||+
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~L~~~~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRA-----LECLKMA--ELEERFANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHH-----HHHHHHT--TCCGGGTTCCGGGSCHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHHHH--CHHHHHHCCCHHHCCHHHHHHH
T ss_conf 55577880412417686688877578887224789999999999-----9988762--4234553488023899999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 99998612998789827788999897999999999860--89839998149204430398999969989882593
Q 000846 493 AIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS--KGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSH 565 (1255)
Q Consensus 493 ~lARal~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~ 565 (1255)
+|||||..+|+++++|||||+||+.++..+++.+.++. .|+|+|+|||+++.+..||||++|++|+|+++|+.
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.5e-40 Score=332.26 Aligned_cols=221 Identities=30% Similarity=0.547 Sum_probs=181.8
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC--------
Q ss_conf 099995899869999996511103886199799998599981899999996166799638999996168889--------
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLH-------- 415 (1255)
Q Consensus 344 ~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~-------- 415 (1255)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 6999978999899---9988150668869979999989998299999999747667899779999993367752000023
Q ss_pred -----HHHHHCCCEEECCCCCCCCC-CHHHHHCCCC---CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCHH-CCCCCCCC
Q ss_conf -----88872423886467766710-1899860499---99999989999999346999960988520100-38999889
Q 000846 416 -----LKWLRSQMGLVNQEPVLFAT-SITENILFGK---DGASMDDVISAAKAANAHDFITKLPDGYETQV-GQLGFQMS 485 (1255)
Q Consensus 416 -----~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i-~~~g~~LS 485 (1255)
...+|+++|||+|+|.+|.. |+.||+.++. ......+..+.. .+.++.+ |+.... .....+||
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~p~~LS 151 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA-----LKYLAKV--GIDERAQGKYPVHLS 151 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHH-----HHHHHHT--TCCHHHHTSCGGGSC
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHC--CCCHHHHCCCCCCCC
T ss_conf 517679997454489983323141101021365657876299989999999-----9999982--995244306822056
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHH-HCCEEEEEECCEEEEEC
Q ss_conf 489999999998612998789827788999897999999999860-8983999814920443-03989999699898825
Q 000846 486 GGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESG 563 (1255)
Q Consensus 486 gGqkqri~lARal~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g 563 (1255)
||||||++||||+..+|+++++||||++||+.+...+++.++++. +|+|+|+|||++..+. .||||++|++|+|++.|
T Consensus 152 GG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g 231 (258)
T d1b0ua_ 152 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 231 (258)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEEEC
T ss_conf 77888989999984399878852455568878888998765541036883389948999999869999999799999984
Q ss_pred CHHHHHCCCCC
Q ss_conf 93688603888
Q 000846 564 SHNELMNRGEG 574 (1255)
Q Consensus 564 ~~~~l~~~~~~ 574 (1255)
+++|++.+..+
T Consensus 232 ~~~ev~~~P~~ 242 (258)
T d1b0ua_ 232 DPEQVFGNPQS 242 (258)
T ss_dssp CHHHHHHSCCS
T ss_pred CHHHHHHCCCC
T ss_conf 99999838999
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.2e-39 Score=327.88 Aligned_cols=217 Identities=24% Similarity=0.381 Sum_probs=183.1
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-C
Q ss_conf 099995899869999996511103886199799998599981899999996166799638999996168889888724-2
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRS-Q 422 (1255)
Q Consensus 344 ~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~-~ 422 (1255)
-++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+....++ .
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 6999778999799---6887121799889979999999998499999999779768873799999966405699999833
Q ss_pred CEEECCCCCCCCC-CHHHHHCCCCCC---------------CCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCH
Q ss_conf 3886467766710-189986049999---------------999989999999346999960988520100389998894
Q 000846 423 MGLVNQEPVLFAT-SITENILFGKDG---------------ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSG 486 (1255)
Q Consensus 423 i~~v~Q~~~lf~~-ti~~Ni~~~~~~---------------~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSg 486 (1255)
|+|++|+|.+|.. |++||+.++... ...++..+ .+.+.++.+ +.+........+|||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE-----KAFKILEFL--KLSHLYDRKAGELSG 153 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHH-----HHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHH-----HHHHHHHHC--CCCHHCCCCHHHCCC
T ss_conf 8725776424788742321430133303450456654213532899999-----999998761--963020595356991
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCHHH-HHCCEEEEEECCEEEEECC
Q ss_conf 8999999999861299878982778899989799999999986-0898399981492044-3039899996998988259
Q 000846 487 GQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV-SKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGS 564 (1255)
Q Consensus 487 Gqkqri~lARal~~~~~ililDe~ts~lD~~~~~~i~~~i~~~-~~~~t~i~ith~~~~~-~~~d~i~~l~~G~i~~~g~ 564 (1255)
|||||++||||+..+|+++||||||++||+.+.+.+++.++++ .+|+|+++++|+++.+ ..||||++|++|+++.+|+
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 88889999999975927232439765699999999999999999789989999476999998699999996998999966
Q ss_pred HHHHHC
Q ss_conf 368860
Q 000846 565 HNELMN 570 (1255)
Q Consensus 565 ~~~l~~ 570 (1255)
++|+.+
T Consensus 234 ~~e~~~ 239 (254)
T d1g6ha_ 234 GEEEIK 239 (254)
T ss_dssp SHHHHH
T ss_pred HHHHHH
T ss_conf 899865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.7e-39 Score=324.11 Aligned_cols=218 Identities=25% Similarity=0.424 Sum_probs=186.7
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 30999958998699999965111038861997999985999818999999961667996389999961688898887242
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ 422 (1255)
Q Consensus 343 ~~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~ 422 (1255)
|.|+++|++++|+. ..+|+|+||++++||+++|+||||||||||+++|.|++.|++|+|.++|.++.. .....|+.
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCEEEEEEEEEECC---EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHHH
T ss_conf 97899958999999---999806256884897999999999999999999966988788879998672446-83988721
Q ss_pred CEEECCCCCCCCC-CHHHHHCCCCC--CCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 3886467766710-18998604999--99999899999993469999609885201003899988948999999999861
Q 000846 423 MGLVNQEPVLFAT-SITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALI 499 (1255)
Q Consensus 423 i~~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~ 499 (1255)
++|+||++.+|.. |++||+.+... ..+..++.+..+.. ++.+ +++........+||||||||++||||+.
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHHC--CCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 86750015468786677888989986179989999999999-----9867--9788885045337998989999999986
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHH-HCCEEEEEECCEEEEECCHHHHHCC
Q ss_conf 2998789827788999897999999999860-8983999814920443-0398999969989882593688603
Q 000846 500 RDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 500 ~~~~ililDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 571 (1255)
.+|+|++|||||++||+.+...+++.++++. +|+|+|++||+++.+. .||||++|++|++++.|+++|+..+
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 59998873379889798999999999999996599899995989999996999999989999999289999865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.3e-39 Score=327.67 Aligned_cols=220 Identities=27% Similarity=0.488 Sum_probs=182.9
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH-HC
Q ss_conf 30999958998699999965111038861997999985999818999999961667996389999961688898887-24
Q 000846 343 GEIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL-RS 421 (1255)
Q Consensus 343 ~~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~-r~ 421 (1255)
.-++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+.... |.
T Consensus 5 ~~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~ 81 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred EEEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 07999618999899---888830257888997999999999859999999967888880389842443446608888874
Q ss_pred CCEEECCCCCCCCC-CHHHHHCCCCCCC-CHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 23886467766710-1899860499999-999899999993469999609885201003899988948999999999861
Q 000846 422 QMGLVNQEPVLFAT-SITENILFGKDGA-SMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALI 499 (1255)
Q Consensus 422 ~i~~v~Q~~~lf~~-ti~~Ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~ 499 (1255)
.++|++|++.+|.. |++||+.++.... ..+...+..... ...++ ++.........+||||||||++||||+.
T Consensus 82 gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~l~~~~~~~~~~LSGG~~Qrv~iAraL~ 155 (240)
T d1ji0a_ 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHH-CHHHHHHCCHHHCCHHHHHHHHHHHHHH
T ss_conf 23556765545776369999998887327888999999999-----98741-7688875854338999999999999998
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHH-HHCCEEEEEECCEEEEECCHHHHHCC
Q ss_conf 2998789827788999897999999999860-898399981492044-30398999969989882593688603
Q 000846 500 RDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 500 ~~~~ililDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 571 (1255)
.+|++++|||||++||+.+...+++.++++. +|+|+|++||++..+ ..||+|++|++|++++.|+++|+.++
T Consensus 156 ~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 29987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4e-38 Score=315.88 Aligned_cols=208 Identities=29% Similarity=0.457 Sum_probs=176.3
Q ss_pred EEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECC
Q ss_conf 58998699999965111038861997999985999818999999961667996389999961688898887242388646
Q 000846 349 DVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQ 428 (1255)
Q Consensus 349 ~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q 428 (1255)
++..+|++ ..+ |+||++. ++.++|+||||||||||+++|.|+++|++|+|.++|.++..++.. |++||||+|
T Consensus 6 ~~~k~~g~----~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~v~Q 77 (240)
T d2onka1 6 RAEKRLGN----FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQ 77 (240)
T ss_dssp EEEEEETT----EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBCCCS
T ss_pred EEEEEECC----EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEEECC
T ss_conf 99999899----999-9999749-979999979998099999999739998962899999998869989--928522523
Q ss_pred CCCCCCC-CHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 7766710-189986049999999989999999346999960988520100389998894899999999986129987898
Q 000846 429 EPVLFAT-SITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLL 507 (1255)
Q Consensus 429 ~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~~~~ilil 507 (1255)
++.+|.. ||+||+.|+.......+..+. +.+.++.+ |+..........||||||||++||||++.+|++++|
T Consensus 78 ~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illl 150 (240)
T d2onka1 78 DYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLL 150 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEE
T ss_pred CHHHCCCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHC--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 14435220155766653233677889999-----99999863--837566579444899998999998777516770675
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHH-HCCEEEEEECCEEEEECCHHHHHCC
Q ss_conf 27788999897999999999860-8-983999814920443-0398999969989882593688603
Q 000846 508 DEATSALDAQSERIVQEAIDKVS-K-GRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 508 De~ts~lD~~~~~~i~~~i~~~~-~-~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 571 (1255)
|||||+||+.+...+++.++++. + |.|+|++||+++.+. .||+|++|++|++++.|+++|+.+.
T Consensus 151 DEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~ 217 (240)
T d2onka1 151 DEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp ESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCC
T ss_conf 2865558879999999999999874397699981899999996999999989999999069998329
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.6e-39 Score=323.40 Aligned_cols=209 Identities=28% Similarity=0.409 Sum_probs=181.5
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 28998788988999887541130589728969999959999788999998412689986699899506898988873230
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i 1087 (1255)
-++++||+.+| +|+||||+|++||.+||+||||||||||+++|.|++ |++|+|.++|.|+...+...++.+.
T Consensus 3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 99998741571-------555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEECCCCC-CCCCCHHHHHHCCCCCCC-HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 88805787-873228999823998879-889999999961999997050012342389999999479999999999704-
Q 000846 1088 ALVSQEPT-LFAGTIRENIAYGKADAR-ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILK- 1164 (1255)
Q Consensus 1088 ~~V~Q~~~-LF~gTIreNl~~g~~~~~-~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll~- 1164 (1255)
++++|+.. .|..++.+|+.++..+.. .+.+.++++.. +++..++....+||||||||+++|||+++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHT-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHC-----------CCHHHHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 245121357744209887641001466899999999865-----------987676768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHH
Q ss_conf ------998889736678989797999999999860-99769998159136641-287999959899882597789833
Q 000846 1165 ------NPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNELVAL 1235 (1255)
Q Consensus 1165 ------~p~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~~i~~-~DrI~vl~~G~ive~G~~~eLl~~ 1235 (1255)
+|+||||||||++||+.+...+.+.++++. .|+|+|+++|+++.+.. ||||++|++|++++.|++++++..
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 7133899889997187777898999999999999986799999996779999997999999979989998899998188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.7e-35 Score=294.95 Aligned_cols=191 Identities=21% Similarity=0.388 Sum_probs=157.1
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 28998788988999887541130589728969999959999788999998412689986699899506898988873230
Q 000846 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i 1087 (1255)
.|+++|++++|. +++|+|+||+|++||.+||+||||||||||+++++|+++|++|+|.+||.++.+ ++.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCE
T ss_conf 599998999939----928842088985998999999999719999999966205677889999896267-----36708
Q ss_pred EEECCCCCCCCC-CHHHHHHCC----CCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 888057878732-289998239----988798899999999619999970500123423899999994799999999997
Q 000846 1088 ALVSQEPTLFAG-TIRENIAYG----KADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAI 1162 (1255)
Q Consensus 1088 ~~V~Q~~~LF~g-TIreNl~~g----~~~~~~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAl 1162 (1255)
+|+||++.++.. |+.+|+.+. ....+++++.++++..++. .++..+ .+||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~----~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL--------DLKKKL----GELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC--------CTTSBG----GGSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC--------CCCCCC----CCCCCCHHHHHHHHHHH
T ss_conf 999501357888289999999997548863799999999874885--------630126----86897188889999988
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEEC
Q ss_conf 0499888973667898979799999999986099769998159136641287999959
Q 000846 1163 LKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKN 1220 (1255)
Q Consensus 1163 l~~p~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~~i~~~DrI~vl~~ 1220 (1255)
+.+|+++||||||++||+.++..+++.+.+..+++++++|+|+- .+..||++.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 64998999868620169999999999999998679999999916-2544161234010
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.5e-35 Score=292.44 Aligned_cols=209 Identities=25% Similarity=0.387 Sum_probs=178.8
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCC
Q ss_conf 09999589986999999651110388619979999859998189999999616679963899999616888988872423
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 423 (1255)
-++++||+++| .|+++||++++||+++|+||||||||||+++|.|+. |.+|+|.++|.++...+...++...
T Consensus 3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 99998741571-------555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEECCCCC-CCCCCHHHHHCCCCCCCC-HHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 88646776-671018998604999999-998999999934699996098852010038999889489999999998612-
Q 000846 424 GLVNQEPV-LFATSITENILFGKDGAS-MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIR- 500 (1255)
Q Consensus 424 ~~v~Q~~~-lf~~ti~~Ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~- 500 (1255)
+|++|+.. .|..++.+++.++..+.. .+.+.+.++.. +++..++....+||||||||++||||+++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHT-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHC-----------CCHHHHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 245121357744209887641001466899999999865-----------987676768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCHHH-HHCCEEEEEECCEEEEECCHHHHHCC
Q ss_conf ------99878982778899989799999999986-0898399981492044-30398999969989882593688603
Q 000846 501 ------DPKILLLDEATSALDAQSERIVQEAIDKV-SKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNR 571 (1255)
Q Consensus 501 ------~~~ililDe~ts~lD~~~~~~i~~~i~~~-~~~~t~i~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 571 (1255)
+|+|++|||||++||+.+...+.+.++++ .+|+|+|++||+++.+ ..||+|++|++|++++.|+++|++..
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 7133899889997187777898999999999999986799999996779999997999999979989998899998188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.9e-32 Score=270.55 Aligned_cols=191 Identities=21% Similarity=0.390 Sum_probs=153.7
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCC
Q ss_conf 09999589986999999651110388619979999859998189999999616679963899999616888988872423
Q 000846 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQM 423 (1255)
Q Consensus 344 ~i~~~~v~f~y~~~~~~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 423 (1255)
.|+++|++|+|+ .++|+|+||++++|+.++|+||||||||||+++|+|+++|++|+|.++|.++.. .+.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCE
T ss_conf 599998999939----928842088985998999999999719999999966205677889999896267-----36708
Q ss_pred EEECCCCCCCCC-CHHHHHCCC----CCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 886467766710-189986049----999999989999999346999960988520100389998894899999999986
Q 000846 424 GLVNQEPVLFAT-SITENILFG----KDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARAL 498 (1255)
Q Consensus 424 ~~v~Q~~~lf~~-ti~~Ni~~~----~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal 498 (1255)
+|++|++.++.. |+.+|+.+. ......+++.++.+...+ + +++. +..+||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~------~--~~~~----~~~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV------L--DLKK----KLGELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC------C--CTTS----BGGGSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC------C--CCCC----CCCCCCCCHHHHHHHHHHH
T ss_conf 99950135788828999999999754886379999999987488------5--6301----2686897188889999988
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEEC
Q ss_conf 1299878982778899989799999999986089839998149204430398999969
Q 000846 499 IRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKA 556 (1255)
Q Consensus 499 ~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~~~~d~i~~l~~ 556 (1255)
+.+|+++||||||++||+++++.+++.+.+..+++++++++|+. .+..||++.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 64998999868620169999999999999998679999999916-2544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=7.2e-27 Score=226.15 Aligned_cols=315 Identities=16% Similarity=0.184 Sum_probs=276.1
Q ss_pred CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 52788730074137899999999999786798999999999863069998886401188999999999999999999999
Q 000846 3 GNDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFVEG 82 (1255)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1255)
.++++++|.+++++ .+++++++.++.++..+..+++++.++|......+. .......+.++++.++..++.+++.
T Consensus 3 ~~krl~~~~~~~k~-~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~l~~~~~~~~~~~~~~~i~~~~~~ 77 (319)
T d3b60a2 3 TFRRLWPTIAPFKA-GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDR----SVLLWMPLVVIGLMILRGITSYISS 77 (319)
T ss_dssp HHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTH----HHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999-999999999999999999999999999987446877----8999999999999997645335466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998199100013667887987999999988999999999999999989999999999999
Q 000846 83 LCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLLFSF 162 (1255)
Q Consensus 83 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~~l~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 162 (1255)
++..+.+.+...++|.+++++++++|+++|++ .++|++++++++|++.+.+.+...+...+..+..+++.++.++
T Consensus 78 ~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~-----~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 152 (319)
T d3b60a2 78 YCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK-----QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMF 152 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHH-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 54434310001100047777650101111023-----3322111112121210000111112001123344566888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99798999999999999999999999999999999999999999999999119999996006999999999999999999
Q 000846 163 ILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELG 242 (1255)
Q Consensus 163 ~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~ 242 (1255)
.++|.++++.++.+|+..++.....++..+..++.++..++..+.+.|.++|++++|+|++|+.+.+++++..++..+..
T Consensus 153 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~ 232 (319)
T d3b60a2 153 YYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQG 232 (319)
T ss_dssp HHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 65200210256689999998876666877878988764456778877762487235311101024566666531356778
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999-99999999999999999960897788899999999999999999999999999999999999998
Q 000846 243 IKQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEM 321 (1255)
Q Consensus 243 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~ 321 (1255)
.+.....+...... .......++++++|++++.+|.++.|.++++..+......|+..+...+..++++.++.+|+.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~el 312 (319)
T d3b60a2 233 MKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAI 312 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88887777406401000000237999999999980997899999999999999999999999999999999999999999
Q ss_pred HCCCCC
Q ss_conf 527999
Q 000846 322 VDRTPA 327 (1255)
Q Consensus 322 l~~~~~ 327 (1255)
+|.+||
T Consensus 313 ld~~~E 318 (319)
T d3b60a2 313 LDSEQE 318 (319)
T ss_dssp HHSCCS
T ss_pred HCCCCC
T ss_conf 669989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.97 E-value=1.8e-26 Score=222.93 Aligned_cols=317 Identities=15% Similarity=0.161 Sum_probs=269.2
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH----HHHHHHHHHHHHHHHHHH
Q ss_conf 2788730074137899999999999786798999999999863069998886401188----999999999999999999
Q 000846 4 NDGLFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDYGNPSSSSLSNDTVD----KYTLRLLYVAIGVGLSAF 79 (1255)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~iid~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 79 (1255)
++++++|.+++++ .++..+++.++.++...+.+++++.++|........... .... ...+.++++.++..++.+
T Consensus 2 lKrl~~~~k~~k~-~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~ 79 (323)
T d2hyda2 2 IKRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTD-EKVHHLTIAIGIALFIFVIVRPPIEF 79 (323)
T ss_dssp HHHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHH-HHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999-999999999999999999999999999998626774215-56899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999998199100013667887987999999988999999999999999989999999999
Q 000846 80 VEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYLSTFFFCLL 159 (1255)
Q Consensus 80 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~g~~~~g~l~~~l~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i 159 (1255)
++.++..+.+.+...++|.+++++++++|+++|++ +++|++++++++|++.+.+.+...+...+..+..++..++
T Consensus 80 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-----~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~ 154 (323)
T d2hyda2 80 IRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN-----NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALS 154 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT-----SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----CCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999999998556778888766540233210001-----2221100011113321001113454201114665334654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 99999798999999999999999999999999999999999999999999999119999996006999999999999999
Q 000846 160 FSFILSWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTM 239 (1255)
Q Consensus 160 ~~~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~ 239 (1255)
+++.++|.++++.++..|+..++...+.++..+..++.++..++..+.+.|.++|+++||+|++|+.+.+++++..++..
T Consensus 155 ~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~ 234 (323)
T d2hyda2 155 IMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFL 234 (323)
T ss_dssp HHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCC
T ss_conf 40000146888999988777777764123332026778989999997878875597023467641110023302231111
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999-99999999999999999960897788899999999999999999999999999999999999
Q 000846 240 ELGIKQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRI 318 (1255)
Q Consensus 240 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri 318 (1255)
+...+.....+...... .+.....++.+++|++++.+|.+++|.++++..+......|+..+...+..+.++.++.+|+
T Consensus 235 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri 314 (323)
T d2hyda2 235 TRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRV 314 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 01567765200001111101205589999999999984998899999999999999999999999999999999999999
Q ss_pred HHHHCCCCC
Q ss_conf 998527999
Q 000846 319 FEMVDRTPA 327 (1255)
Q Consensus 319 ~~~l~~~~~ 327 (1255)
.+++|++||
T Consensus 315 ~elLd~e~e 323 (323)
T d2hyda2 315 FQLIDEDYD 323 (323)
T ss_dssp HHHHTCCCS
T ss_pred HHHHCCCCC
T ss_conf 999779998
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=3.1e-23 Score=197.23 Aligned_cols=318 Identities=17% Similarity=0.248 Sum_probs=280.1
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 38999988721346999999999999977788999999999998832771356543789999999999999999999999
Q 000846 669 PSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHY 748 (1255)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 748 (1255)
+..++++++.++.++.+..++++.++.+++....+++++.++|....... ......+...++++.++..++.+++.+
T Consensus 2 k~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~l~~~~~~~~~~~~~~~i~~~~~~~ 78 (319)
T d3b60a2 2 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD---RSVLLWMPLVVIGLMILRGITSYISSY 78 (319)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT---HHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68999999999999999999999999999999999999999998744687---789999999999999976453354665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999981886554457888689999998339999999998999999999999999999999979
Q 000846 749 SFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSW 828 (1255)
Q Consensus 749 ~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~~~g~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1255)
.....+.++..++|.++++++++.|++||+ ++++|++++++++|++.+...+...+...+..++.+++.++.++..+|
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (319)
T d3b60a2 79 CISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW 156 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHCCCCHHHCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 443431000110004777765010111102--333221111121212100001111120011233445668888876520
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 89999999999999999999999999999999999998789999870269999831289999999999712699999999
Q 000846 829 RLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKHS 908 (1255)
Q Consensus 829 ~lali~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 908 (1255)
.+++++++.+|+.........+...+..++.++..++......|.+.|++++|+++.|+.+.+++++..++..+...+..
T Consensus 157 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 236 (319)
T d3b60a2 157 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 236 (319)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02102566899999988766668778789887644567788777624872353111010245666665313567788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99989999999999999999999999998839999899999999999999999999999999999999999999998036
Q 000846 909 WYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRR 988 (1255)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~ 988 (1255)
+.................++++++|++++.+|.+++|+++++..+......|+..+......++++..+.+|+.+++|.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~ 316 (319)
T d3b60a2 237 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE 316 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 77774064010000002379999999999809978999999999999999999999999999999999999999996699
Q ss_pred CCC
Q ss_conf 888
Q 000846 989 SEI 991 (1255)
Q Consensus 989 ~~~ 991 (1255)
+|+
T Consensus 317 ~E~ 319 (319)
T d3b60a2 317 QEK 319 (319)
T ss_dssp CSC
T ss_pred CCC
T ss_conf 899
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.95 E-value=6.3e-23 Score=194.77 Aligned_cols=318 Identities=13% Similarity=0.136 Sum_probs=272.7
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999988721346999999999999977788999999999998832771356543----7899999999999999999999
Q 000846 671 QWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSK----SRTLSLFFLGVAVLNFISSLLQ 746 (1255)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~ 746 (1255)
.++++++.++.++.+..+++++++.+++....|+..+.++|............. .......+.+..++..++.+.+
T Consensus 2 lKrl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (323)
T d2hyda2 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (323)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999999999999999986267742155689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999818865544578886899999983399999999989999999999999999999999
Q 000846 747 HYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVL 826 (1255)
Q Consensus 747 ~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~~~g~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (1255)
.+...+.+.+...++|.++++++++.|++||+ ++++|++++++++|++.+.+.+...+...+..++.+++.++.++++
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999855677888876654023321000--1222110001111332100111345420111466533465440000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 79899999999999999999999999999999999999987899998702699998312899999999997126999999
Q 000846 827 SWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLK 906 (1255)
Q Consensus 827 ~~~lali~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~tIr~~~~~~~~~~~~~~~~~~~~~~~~~ 906 (1255)
+|.++++.++..|+.........+..++..++..+..++..+...|.+.|+++||+++.++.+.+++.+..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf 14688899998877777776412333202677898999999787887559702346764111002330223111101567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999899999999999999999999999988399998999999999999999999999999999999999999999980
Q 000846 907 HSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILD 986 (1255)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 986 (1255)
..+...........+..+...+++++|++++.+|.+++|+++++..+......++..+.....+++++..+.+|+.+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76520000111110120558999999999998499889999999999999999999999999999999999999999977
Q ss_pred CCCC
Q ss_conf 3688
Q 000846 987 RRSE 990 (1255)
Q Consensus 987 ~~~~ 990 (1255)
.+||
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
T ss_conf 9998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.53 E-value=3e-16 Score=141.46 Aligned_cols=159 Identities=10% Similarity=0.053 Sum_probs=111.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHH
Q ss_conf 99999599997889999984126899866998995068989888732308880578787322899982399887988999
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIK 1118 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~gTIreNl~~g~~~~~~~~i~ 1118 (1255)
|++|+||+|||||||++.++|.+++..|.+.+++.+....+.........+.++.+.++..+..++...++.....+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY-- 79 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHH--
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023037625--
Q ss_pred HHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CC
Q ss_conf 9999961999997050012342389999999479999999999704998889736678989797999999999860--99
Q 000846 1119 KAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MG 1196 (1255)
Q Consensus 1119 ~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll~~p~ILiLDEaTS~LD~~te~~I~~~l~~~~--~~ 1196 (1255)
..+|+|++|+.+++++..++|+++++|||+...+. .....+.+.+.. .+
T Consensus 80 ---------------------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 80 ---------------------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPN 130 (178)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTT
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHHHHHHHHHHCCCC
T ss_conf ---------------------------66532013789999997409974230277731004--5799999998750579
Q ss_pred CEEEEECCCCHHHHHCCEEEEEECCEEEEECC
Q ss_conf 76999815913664128799995989988259
Q 000846 1197 RTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGS 1228 (1255)
Q Consensus 1197 ~TvI~IaHrl~~i~~~DrI~vl~~G~ive~G~ 1228 (1255)
+|+|.++|+......||++..+++|++++.+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 78999974477898636599871999999899
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.36 E-value=3.5e-14 Score=125.04 Aligned_cols=159 Identities=13% Similarity=0.066 Sum_probs=106.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf 99998599981899999996166799638999996168889888724238864677667101899860499999999899
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVI 454 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~ 454 (1255)
+++|+||+|||||||++.++|++++..|.+..++.+.................+.+.++..+...+...+..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY-------- 73 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE--------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023--------
Q ss_pred HHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-C-CC
Q ss_conf 999993469999609885201003899988948999999999861299878982778899989799999999986-0-89
Q 000846 455 SAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV-S-KG 532 (1255)
Q Consensus 455 ~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~~~~ililDe~ts~lD~~~~~~i~~~i~~~-~-~~ 532 (1255)
+.+.. ...+++|+++|.++++++..+|+++++|||....+. . ..+.+.+.+. . .+
T Consensus 74 -----------------~~~~~----~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~-~-~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 74 -----------------GVNVQ----YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF-S-KKFRDLVRQIMHDPN 130 (178)
T ss_dssp -----------------EECHH----HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG-C-HHHHHHHHHHHTCTT
T ss_pred -----------------HCCCC----HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH-H-HHHHHHHHHHHCCCC
T ss_conf -----------------03762----566532013789999997409974230277731004-5-799999998750579
Q ss_pred CEEEEEECCCHHHHHCCEEEEEECCEEEEECC
Q ss_conf 83999814920443039899996998988259
Q 000846 533 RTTLIIAHRLSTIRTANLIMVLKAGKVVESGS 564 (1255)
Q Consensus 533 ~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~ 564 (1255)
+++|+++|+......+|++..+++|++++-+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 78999974477898636599871999999899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=1e-10 Score=97.35 Aligned_cols=72 Identities=25% Similarity=0.353 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHCCEEEEE
Q ss_conf 9994799999999997----04998889736678989797999999999860-997699981591366412879999
Q 000846 1147 QLSGGQKQRIALARAI----LKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHRLSTIQKSDTIAVI 1218 (1255)
Q Consensus 1147 ~LSgGQrQrlalARAl----l~~p~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~~i~~~DrI~vl 1218 (1255)
.+|||||.++++|-.+ ..++|+++||||+++||+.+...+.+.|++.. .+.-+|+|||+...+..+|+++..
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.19 E-value=7.6e-10 Score=90.48 Aligned_cols=75 Identities=27% Similarity=0.397 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEE--EEC
Q ss_conf 9994799999999997----0499888973667898979799999999986099769998159136641287999--959
Q 000846 1147 QLSGGQKQRIALARAI----LKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAV--IKN 1220 (1255)
Q Consensus 1147 ~LSgGQrQrlalARAl----l~~p~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~~i~~~DrI~v--l~~ 1220 (1255)
.+|+|||+.+.++..+ ..+++++++|||-++|+|.....+.+.|++..++.-+|++||+...+..+|+++. |++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 8
Q 000846 1221 G 1221 (1255)
Q Consensus 1221 G 1221 (1255)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.18 E-value=1.7e-09 Score=87.76 Aligned_cols=73 Identities=19% Similarity=0.274 Sum_probs=61.4
Q ss_pred CCCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHHCCEEEEE
Q ss_conf 9889489999999998----612998789827788999897999999999860-898399981492044303989999
Q 000846 482 FQMSGGQKQRIAIARA----LIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHRLSTIRTANLIMVL 554 (1255)
Q Consensus 482 ~~LSgGqkqri~lARa----l~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~ith~~~~~~~~d~i~~l 554 (1255)
..||||||.++++|-. .+.++|+++||||+++||+.....+.+.|.+.. .+..+|++||++.....+|+++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.02 E-value=1.2e-08 Score=80.99 Aligned_cols=76 Identities=25% Similarity=0.367 Sum_probs=65.1
Q ss_pred CCCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEE--EE
Q ss_conf 9889489999999998----61299878982778899989799999999986089839998149204430398999--96
Q 000846 482 FQMSGGQKQRIAIARA----LIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMV--LK 555 (1255)
Q Consensus 482 ~~LSgGqkqri~lARa----l~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~~~~d~i~~--l~ 555 (1255)
..+|+|||+...++.. ...+++++++|||-++|++...+.+.+.+.+..++.-+|++||++..+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEE
T ss_conf 10257776677777665565422674455432033579789999999999855488799998988999732428999996
Q ss_pred CC
Q ss_conf 99
Q 000846 556 AG 557 (1255)
Q Consensus 556 ~G 557 (1255)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
T ss_conf 99
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.01 E-value=0.0056 Score=35.71 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=27.9
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 51110388619979999859998189999999616
Q 000846 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 362 ~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 396 (1255)
.|++..--+.+|+++.|.|++|+||||++.-+..-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 68887469789808999947999799999999972
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.67 E-value=0.0018 Score=39.66 Aligned_cols=35 Identities=37% Similarity=0.539 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99799998599981899999996166799638999
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLL 406 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i 406 (1255)
.+..+.|+|++||||||+++.|.++.++..--+.+
T Consensus 165 ~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 165 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 37888999403566257899986530145623311
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.48 E-value=0.018 Score=31.60 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=81.1
Q ss_pred CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCEECCCCCHHHHHCC-EEEECCCCCCCCCCHH
Q ss_conf 54113058972896999995999978899999841-268998669989950689898887323-0888057878732289
Q 000846 1025 MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLER-FYDPLKGSVFMDEQDIRNYNLKQLRSH-IALVSQEPTLFAGTIR 1102 (1255)
Q Consensus 1025 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~r-l~~p~~G~I~idG~di~~~~~~~lr~~-i~~V~Q~~~LF~gTIr 1102 (1255)
+.|+++..-+.+|+.+.|.|++|+||||++.-++. +..-..-.+.+-.. +.+......+ ++...+-+.--..+.+
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~---E~~~~~~~~r~~~~~~~~~~~~~~~~~ 99 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML---EESVEETAEDLIGLHNRVRLRQSDSLK 99 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES---SSCHHHHHHHHHHHHTTCCGGGCHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE---CCCHHHHHHHHHHHHHCCCCHHHCCCC
T ss_conf 66888746978980899994799979999999997265533663457640---111135776999986458710101222
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCCCEEEEECCCCCCCH
Q ss_conf 998239988798899999999619999970500123423899999994799999999997--049988897366789897
Q 000846 1103 ENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAI--LKNPSILLLDEATSALDS 1180 (1255)
Q Consensus 1103 eNl~~g~~~~~~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAl--l~~p~ILiLDEaTS~LD~ 1180 (1255)
.+ .+....+.++...+...-.-..-+........+ .+...+.. -.+|+++++|=.+ .+++
T Consensus 100 ~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vvID~l~-~l~~ 161 (277)
T d1cr2a_ 100 RE---------------IIENGKFDQWFDELFGNDTFHLYDSFAEAETDR--LLAKLAYMRSGLGCDVIILDHIS-IVVS 161 (277)
T ss_dssp HH---------------HHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHH--HHHHHHHHHHTTCCSEEEEEEEE-C---
T ss_pred CC---------------HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH--HHHHHHHHHHCCCCCEEEECCCC-CCCC
T ss_conf 22---------------145677888988740352146621433106899--99986543213676259970542-1203
Q ss_pred --------HHHHHHHHHHHHHC--CCCEEEEECCCC----------------H------HHH-HCCEEEEEEC
Q ss_conf --------97999999999860--997699981591----------------3------664-1287999959
Q 000846 1181 --------VSESLVQEALEKMM--MGRTCVVVAHRL----------------S------TIQ-KSDTIAVIKN 1220 (1255)
Q Consensus 1181 --------~te~~I~~~l~~~~--~~~TvI~IaHrl----------------~------~i~-~~DrI~vl~~ 1220 (1255)
..-..+.+.++++. .++++++++|=- + .+. .||.++.+..
T Consensus 162 ~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r 234 (277)
T d1cr2a_ 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (277)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEE
T ss_conf 4654430677899999999976501655203103563224445543333211212343001503869999984
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.24 E-value=0.015 Score=32.38 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=27.6
Q ss_pred CCCCEEE-EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 5111038-86199799998599981899999996166
Q 000846 362 VLQGLNL-RVPAGKSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 362 ~l~~~~~-~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
.|+.+-- -+++|+.+.|.|++|||||+++.-++...
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7988456898698499999189999999999999999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.13 E-value=0.0026 Score=38.37 Aligned_cols=34 Identities=29% Similarity=0.285 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9979999859998189999999616679963899
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVL 405 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 405 (1255)
+|++++++|+||.|||||++.|.+......|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.035 Score=29.34 Aligned_cols=30 Identities=37% Similarity=0.409 Sum_probs=24.1
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 5111038861997999985999818999999961
Q 000846 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 362 ~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
++.+ +.||+.+.|.|++|+|||||+.-+.-
T Consensus 22 li~G----~~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 22 VLPN----MVAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EETT----EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHCC----CCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 8689----55895899992899989999999999
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.01 E-value=0.0059 Score=35.53 Aligned_cols=40 Identities=28% Similarity=0.378 Sum_probs=32.8
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 5897289699999599997889999984126899866998
Q 000846 1031 SLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFM 1070 (1255)
Q Consensus 1031 sl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~i 1070 (1255)
..-++.|..+.|+|++||||||++++|+++.++..=-|.|
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 9999837888999403566257899986530145623311
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.04 Score=28.93 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=25.1
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8619979999859998189999999616679
Q 000846 369 RVPAGKSVGLVGGSGSGKSTTIALLQRFYDP 399 (1255)
Q Consensus 369 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 399 (1255)
.+++...+.+.||+|||||++++.+...+..
T Consensus 41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~~ 71 (256)
T d1lv7a_ 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV 71 (256)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 9998886786689988822899999998299
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.83 E-value=0.045 Score=28.54 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=32.7
Q ss_pred CCCCEEEEECCCCCCCHHHHHHH-HHHHHHHC-CCCEEEEEECCCHHHH
Q ss_conf 29987898277889998979999-99999860-8983999814920443
Q 000846 500 RDPKILLLDEATSALDAQSERIV-QEAIDKVS-KGRTTLIIAHRLSTIR 546 (1255)
Q Consensus 500 ~~~~ililDe~ts~lD~~~~~~i-~~~i~~~~-~~~t~i~ith~~~~~~ 546 (1255)
.+..++++||...+=++.....+ ...+..+. .+..++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9772785545456862332002588888888623761378652023332
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.83 E-value=4.5e-05 Score=52.39 Aligned_cols=30 Identities=30% Similarity=0.321 Sum_probs=13.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 999959999788999998412689986699
Q 000846 1040 VALVGQSGCGKSTIIGLLERFYDPLKGSVF 1069 (1255)
Q Consensus 1040 vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~ 1069 (1255)
+.|+||.|+|||||++.+.+.+....+.+.
T Consensus 4 v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~ 33 (189)
T d2i3ba1 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 999889997199999999999997799799
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.74 E-value=0.0046 Score=36.37 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=28.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8969999959999788999998412689986699
Q 000846 1036 AGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVF 1069 (1255)
Q Consensus 1036 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~ 1069 (1255)
+|++.+++|+||.|||||+|.|.+-.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.71 E-value=0.002 Score=39.34 Aligned_cols=26 Identities=38% Similarity=0.448 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97999985999818999999961667
Q 000846 373 GKSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 373 g~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
|+++.|+|||||||||+.+.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.65 E-value=0.045 Score=28.50 Aligned_cols=22 Identities=36% Similarity=0.335 Sum_probs=13.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7999985999818999999961
Q 000846 374 KSVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+.+.++|++||||||+++.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.63 E-value=0.0089 Score=34.11 Aligned_cols=35 Identities=31% Similarity=0.361 Sum_probs=27.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9979999859998189999999616679963899999
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDG 408 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g 408 (1255)
.|+.+.|.|++||||||+.+.|...+... -+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCC--EEEECH
T ss_conf 98599998899998899999999995999--799068
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.56 E-value=0.055 Score=27.81 Aligned_cols=140 Identities=16% Similarity=0.236 Sum_probs=75.0
Q ss_pred CEEEEEEEEECCCC--CCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCCEEEECCEECCC
Q ss_conf 28998788988999--8875411305897289699999599997889999984--------1268998669989950689
Q 000846 1008 RIELKNVFFAYPTR--PDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLE--------RFYDPLKGSVFMDEQDIRN 1077 (1255)
Q Consensus 1008 ~I~~~~Vsf~Y~~~--~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~--------rl~~p~~G~I~idG~di~~ 1077 (1255)
.+++++ .++|-- ....|=+|+.+ . ++.+-|.|||.+||||+++.+. |.+-|.+.
T Consensus 9 ~~~i~~--~rHPlle~~~~~VpNdi~~--~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~----------- 72 (224)
T d1ewqa2 9 RLQIRA--GRHPVVERRTEFVPNDLEM--A-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEE----------- 72 (224)
T ss_dssp SEEEEE--ECCTTGGGTSCCCCEEEEE--S-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSE-----------
T ss_pred CEEEEE--CCCCEECCCCCEECCEEEE--C-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCC-----------
T ss_conf 278985--7188794899754555884--7-86799978873453234556589999985250461375-----------
Q ss_pred CCHHHHHCCEEEECCCCCCCC-CCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 898887323088805787873-2289998239988798899999999619999970500123423899999994799999
Q 000846 1078 YNLKQLRSHIALVSQEPTLFA-GTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRI 1156 (1255)
Q Consensus 1078 ~~~~~lr~~i~~V~Q~~~LF~-gTIreNl~~g~~~~~~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrl 1156 (1255)
+-+|.-..+|. --..+++.-+... -..|+.+ +.+.+.
T Consensus 73 ----------~~i~~~d~I~~~~~~~d~~~~~~St-F~~el~~------~~~il~------------------------- 110 (224)
T d1ewqa2 73 ----------AHLPLFDGIYTRIGASDDLAGGKST-FMVEMEE------VALILK------------------------- 110 (224)
T ss_dssp ----------EEECCCSEEEEECCC------CCSH-HHHHHHH------HHHHHH-------------------------
T ss_pred ----------EEEEECCEEEEEECCCCCCCCCCCH-HHHHHHH------HHHHHC-------------------------
T ss_conf ----------1994011699998777602378307-8986788------987750-------------------------
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHH
Q ss_conf 99999704998889736678989797999999999860--9976999815913664
Q 000846 1157 ALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVAHRLSTIQ 1210 (1255)
Q Consensus 1157 alARAll~~p~ILiLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~~i~ 1210 (1255)
-..+..++|+||.-.+-|+.--..+-.++-+.+ .+++++++||..+...
T Consensus 111 -----~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 111 -----EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp -----HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred -----CCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf -----289772785545456862332002588888888623761378652023332
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.44 E-value=0.06 Score=27.50 Aligned_cols=26 Identities=38% Similarity=0.316 Sum_probs=21.2
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 61997999985999818999999961
Q 000846 370 VPAGKSVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 370 i~~g~~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
-+.-+.+.++|++||||||+++-+..
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 99998999989999989999999997
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.44 E-value=0.06 Score=27.50 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=73.8
Q ss_pred CCCCEEE-EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHH
Q ss_conf 4113058-9728969999959999788999998412689986-6998995068989888732308880578787322899
Q 000846 1026 ILKGLSL-KIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG-SVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRE 1103 (1255)
Q Consensus 1026 vL~~isl-~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G-~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~gTIre 1103 (1255)
-|+.+=- -+++|+.+-|.|++|||||+++.-++.-..-..+ -++++- +.+...++++
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~----e~~~~~~~~~----------------- 72 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY----EESRAQLLRN----------------- 72 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES----SSCHHHHHHH-----------------
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEC----CCCHHHHHHH-----------------
T ss_conf 7988456898698499999189999999999999999872324411212----6799999999-----------------
Q ss_pred HHHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHH
Q ss_conf 982399887988999999996199999705001234238999999947999999999970-4998889736678989797
Q 000846 1104 NIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAIL-KNPSILLLDEATSALDSVS 1182 (1255)
Q Consensus 1104 Nl~~g~~~~~~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll-~~p~ILiLDEaTS~LD~~t 1182 (1255)
--.++ .+.+++.. .+.-............ +...=.+.+++- .+|++++.|-.++.....+
T Consensus 73 ~~~~~---~~~~~~~~---------------~~~~~~~~~~~~~~~~-~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~ 133 (242)
T d1tf7a2 73 AYSWG---MDFEEMER---------------QNLLKIVCAYPESAGL-EDHLQIIKSEINDFKPARIAIDSLSALARGVS 133 (242)
T ss_dssp HHTTS---CCHHHHHH---------------TTSEEECCCCGGGSCH-HHHHHHHHHHHHTTCCSEEEEECHHHHTSSSC
T ss_pred HHHCC---CCHHHHHH---------------CCCEEEEEEECCHHHH-HHHHHHHHHHHHHCCCCEEEEECCHHHHCCCC
T ss_conf 99829---98699854---------------5861799730001017-99999999999840885332204314304899
Q ss_pred HHHHHHHHHH---HC--CCCEEEEECCCC----------HHHHH-CCEEEEEEC
Q ss_conf 9999999998---60--997699981591----------36641-287999959
Q 000846 1183 ESLVQEALEK---MM--MGRTCVVVAHRL----------STIQK-SDTIAVIKN 1220 (1255)
Q Consensus 1183 e~~I~~~l~~---~~--~~~TvI~IaHrl----------~~i~~-~DrI~vl~~ 1220 (1255)
+..+.+.+.. .. .++|++++.|.- ..+.. +|-|+.|+.
T Consensus 134 ~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 134 NNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 999999999999999986983999985675125544577640464216999998
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.43 E-value=0.061 Score=27.48 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=25.4
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 861997999985999818999999961667
Q 000846 369 RVPAGKSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 369 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
.+++...+.+.||+|+|||++++.+.+.+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.43 E-value=0.0096 Score=33.86 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599981899999996166
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
.++++|++|+|||||++.|.|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.40 E-value=0.01 Score=33.56 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=23.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 69999959999788999998412689986699899
Q 000846 1038 KTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDE 1072 (1255)
Q Consensus 1038 e~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG 1072 (1255)
+.+.|+|++||||||+++.|.+-. .|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEECH
T ss_conf 799998999999999999999957---99799603
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.004 Score=36.87 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998599981899999996166799
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFYDPV 400 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~~~~ 400 (1255)
.++|+|++|||||||++-|.+.+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.31 E-value=0.0056 Score=35.72 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=23.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1997999985999818999999961667
Q 000846 371 PAGKSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 371 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
.+|-.+.++|++||||||+.+.|...+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.24 E-value=0.0068 Score=35.04 Aligned_cols=28 Identities=39% Similarity=0.553 Sum_probs=24.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9699999599997889999984126899
Q 000846 1037 GKTVALVGQSGCGKSTIIGLLERFYDPL 1064 (1255)
Q Consensus 1037 Ge~vaIVG~SGSGKSTL~~lL~rl~~p~ 1064 (1255)
|..+.|+||||||||||++.|..-++..
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~ 29 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNL 29 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 7499998999999999999998458997
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.18 E-value=0.071 Score=26.91 Aligned_cols=167 Identities=17% Similarity=0.169 Sum_probs=75.3
Q ss_pred CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHH
Q ss_conf 54113058972896999995999978899999841268998669989950689898887323088805787873228999
Q 000846 1025 MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIREN 1104 (1255)
Q Consensus 1025 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~gTIreN 1104 (1255)
.++.+ +.||+.+-|.|++|+||||++.-|+--. ..|.=..++.... ...+-|+.-|.. ...+.+.
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~i--a~g~~~~~~~~~~-------~~~vl~~~~E~~--~~~~~~R 85 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQI--AGGPDLLEVGELP-------TGPVIYLPAEDP--PTAIHHR 85 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHHHHH--HTCCCTTCCCCCC-------CCCEEEEESSSC--HHHHHHH
T ss_pred HHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHH--HCCCCCCCCCCCC-------CCCEEEEECCCH--HHHHHHH
T ss_conf 98689----5589589999289998999999999999--7699721112357-------873689851234--9999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----C
Q ss_conf 82399887988999999996199999705001234238999999947999999999970499888973667898-----9
Q 000846 1105 IAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSAL-----D 1179 (1255)
Q Consensus 1105 l~~g~~~~~~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll~~p~ILiLDEaTS~L-----D 1179 (1255)
+.--....+.++..... ..+ .+....+.... -.-....-.+ +....+++++++|--++.. |
T Consensus 86 l~~~~~~~~~~~~~~~~---------~~~--~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~lvviD~l~~~~~~~~~~ 151 (274)
T d1nlfa_ 86 LHALGAHLSAEERQAVA---------DGL--LIQPLIGSLPN--IMAPEWFDGL-KRAAEGRRLMVLDTLRRFHIEEENA 151 (274)
T ss_dssp HHHHHTTSCHHHHHHHH---------HHE--EECCCTTSCCC--TTSHHHHHHH-HHHHTTCSEEEEECGGGGCCSCTTC
T ss_pred HHHHHHCCCHHHHHCCC---------CCC--EECCCCCCCCH--HHHHHHHHHH-HHHCCCCCEEECCCHHHHCCCCCCC
T ss_conf 99986236866653123---------332--32145674203--5789999998-8752676589628135422665232
Q ss_pred HHHHHHHHHHHHHHC--CCCEEEEECCCCH------------------HHH-HCCEEEEEEC
Q ss_conf 797999999999860--9976999815913------------------664-1287999959
Q 000846 1180 SVSESLVQEALEKMM--MGRTCVVVAHRLS------------------TIQ-KSDTIAVIKN 1220 (1255)
Q Consensus 1180 ~~te~~I~~~l~~~~--~~~TvI~IaHrl~------------------~i~-~~DrI~vl~~ 1220 (1255)
......+.+.++.+. .++|+++|.|--. .+. .+|.++.|..
T Consensus 152 ~~~~~~~~~~l~~la~~~~~~vi~v~H~~K~~~~~~~~~~~~~~~Gssai~~~a~~v~~l~r 213 (274)
T d1nlfa_ 152 SGPMAQVIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSS 213 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CTGGGCSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEE
T ss_conf 25689999887777644797540131005554446886653356427778742558999983
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.16 E-value=0.072 Score=26.87 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 8999999999861299878982778899
Q 000846 487 GQKQRIAIARALIRDPKILLLDEATSAL 514 (1255)
Q Consensus 487 Gqkqri~lARal~~~~~ililDe~ts~l 514 (1255)
.++-|-.+.+|-...|-|+++||.-+-.
T Consensus 86 ~~~l~~~f~~A~~~~p~il~ideid~l~ 113 (265)
T d1r7ra3 86 EANVREIFDKARQAAPCVLFFDELDSIA 113 (265)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSGGGTC
T ss_pred HHHHHHHHHHHHHCCCCCEEHHHHHHCC
T ss_conf 8999999999986398435687546324
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.00016 Score=48.12 Aligned_cols=35 Identities=26% Similarity=0.103 Sum_probs=27.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 79999859998189999999616679963899999
Q 000846 374 KSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDG 408 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g 408 (1255)
+.+.|+||+|+|||||++.+.+.+....+.+.+.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~ 36 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 69999889997199999999999997799799998
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.07 E-value=0.0079 Score=34.52 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999985999818999999961667
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
+|.++.|+||||+||+||.+.|...++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.96 E-value=0.0028 Score=38.14 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=26.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9979999859998189999999616679963899
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVL 405 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 405 (1255)
+|+.++++|+||.|||||++.|.+......|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.90 E-value=0.084 Score=26.34 Aligned_cols=142 Identities=17% Similarity=0.255 Sum_probs=70.4
Q ss_pred CEEEEEEEEEECCC----CCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCCEEEECCEE
Q ss_conf 30999958998699----99996511103886199799998599981899999996--------1667996389999961
Q 000846 343 GEIEFRDVYFCYPS----RPDTLVLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQ--------RFYDPVEGEVLLDGYK 410 (1255)
Q Consensus 343 ~~i~~~~v~f~y~~----~~~~~~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~--------~~~~~~~G~i~i~g~~ 410 (1255)
+.+++++... |- .++..+=+|+++. +.+....|.||+.+||||+++.+. |.+-|-+- ..+
T Consensus 10 ~~l~i~~~rH--Plle~~~~~~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~-a~~---- 81 (234)
T d1wb9a2 10 PGIRITEGRH--PVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQK-VEI---- 81 (234)
T ss_dssp SCEEEEEECC--TTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSE-EEE----
T ss_pred CCEEEEEEEC--CEEECCCCCCCCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCC-EEC----
T ss_conf 9689997378--7797446998264057988-9953999954673136899998799999987297674176-661----
Q ss_pred CCCCCHHHHHCCCEEECCCCCCCC-CCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHH
Q ss_conf 688898887242388646776671-0189986049999999989999999346999960988520100389998894899
Q 000846 411 IRRLHLKWLRSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQK 489 (1255)
Q Consensus 411 ~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqk 489 (1255)
+--..+|. -...|++.-|.. .-..|+.+. ...++
T Consensus 82 ----------------~~~d~I~~~~~~~d~~~~~~S-~F~~E~~~~------~~il~---------------------- 116 (234)
T d1wb9a2 82 ----------------GPIDRIFTRVGAADDLASGRS-TFMVEMTET------ANILH---------------------- 116 (234)
T ss_dssp ----------------CCCCEEEEEEC------------CHHHHHHH------HHHHH----------------------
T ss_pred ----------------CCCHHHEEEECCCCCCCCCHH-HHHHHHHHH------HHHHH----------------------
T ss_conf ----------------344202348746753436531-899999999------99997----------------------
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHH-CC-CCEEEEEECCCHHH
Q ss_conf 999999986129987898277889998979999-9999986-08-98399981492044
Q 000846 490 QRIAIARALIRDPKILLLDEATSALDAQSERIV-QEAIDKV-SK-GRTTLIIAHRLSTI 545 (1255)
Q Consensus 490 qri~lARal~~~~~ililDe~ts~lD~~~~~~i-~~~i~~~-~~-~~t~i~ith~~~~~ 545 (1255)
-..+..++++||...+=++.....+ ...+..+ .+ +..+++.||.....
T Consensus 117 --------~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 117 --------NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp --------HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred --------HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf --------454660885322235877456667898764543204544289852468776
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.86 E-value=0.0092 Score=34.01 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859998189999999616679
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFYDP 399 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~~~ 399 (1255)
+++|.|++||||||+.+.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.84 E-value=0.087 Score=26.23 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=24.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 9728969999959999788999998412689986699899506
Q 000846 1033 KIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDI 1075 (1255)
Q Consensus 1033 ~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di 1075 (1255)
.+++...+-+.||+|+|||++++.+.+.+... -+.+++-++
T Consensus 41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~l 81 (256)
T d1lv7a_ 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (256)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEHHHH
T ss_conf 99988867866899888228999999982998--799886994
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.73 E-value=0.011 Score=33.41 Aligned_cols=29 Identities=38% Similarity=0.551 Sum_probs=23.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 99998599981899999996166799638
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFYDPVEGE 403 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 403 (1255)
.++|+|++|+|||||++.|.|.-.-.+|.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~ 86 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEGA 86 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 79998999997899999995888677756
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.73 E-value=0.014 Score=32.47 Aligned_cols=35 Identities=31% Similarity=0.442 Sum_probs=27.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8969999959999788999998412689986699899
Q 000846 1036 AGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDE 1072 (1255)
Q Consensus 1036 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG 1072 (1255)
.|+.+.|+|++||||||+++.|.+-+... -+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCC--EEEECH
T ss_conf 98599998899998899999999995999--799068
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.72 E-value=0.0091 Score=34.05 Aligned_cols=26 Identities=23% Similarity=0.088 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 79999859998189999999616679
Q 000846 374 KSVGLVGGSGSGKSTTIALLQRFYDP 399 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~~~~~ 399 (1255)
+.++|+|++|||||||+.-|.+.+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 09999809999899999999999986
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.69 E-value=0.03 Score=29.93 Aligned_cols=45 Identities=22% Similarity=0.410 Sum_probs=31.5
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 2998789827788999897999999999860898399981492044
Q 000846 500 RDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTI 545 (1255)
Q Consensus 500 ~~~~ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~ 545 (1255)
.+..++++||+-. +.......+.+.+.........|++|++.+.+
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 8724999424333-45431112210022135664300010211100
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.65 E-value=0.01 Score=33.69 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859998189999999616
Q 000846 375 SVGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~ 396 (1255)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.64 E-value=0.014 Score=32.63 Aligned_cols=28 Identities=25% Similarity=0.538 Sum_probs=24.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1997999985999818999999961667
Q 000846 371 PAGKSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 371 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
|+|-.++|.|++||||||+.+.|...+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.60 E-value=0.015 Score=32.33 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999985999818999999961667
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
..+.+.|.|++||||||+.+.|...+.
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 985999989999998999999999728
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.55 E-value=0.0047 Score=36.36 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=29.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8969999959999788999998412689986699
Q 000846 1036 AGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVF 1069 (1255)
Q Consensus 1036 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~ 1069 (1255)
+|.+..++|+||.|||||+|.|.+-.....|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.50 E-value=0.012 Score=32.96 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999818999999961667
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
.+||.|++||||||+.+.|...+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989997879999999999964
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.46 E-value=0.011 Score=33.51 Aligned_cols=25 Identities=36% Similarity=0.660 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9799998599981899999996166
Q 000846 373 GKSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 373 g~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
-+.++|.|++|||||||++.|...+
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3289998999998999999999984
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.45 E-value=0.013 Score=32.77 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599981899999996166
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
.++++|.+|+||||+++.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.42 E-value=0.016 Score=32.00 Aligned_cols=52 Identities=21% Similarity=0.232 Sum_probs=35.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE------------ECCEECCCCCHHHHHCCE
Q ss_conf 8969999959999788999998412689986699------------899506898988873230
Q 000846 1036 AGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVF------------MDEQDIRNYNLKQLRSHI 1087 (1255)
Q Consensus 1036 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~------------idG~di~~~~~~~lr~~i 1087 (1255)
.|..+.|+|||||||+||.+.|+.-++...-... .||+|.--++.....+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i 64 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI 64 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEECHHHHHHHH
T ss_conf 9809999999999999999999863986684278887636788655432123343289999875
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.27 E-value=0.021 Score=31.21 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=33.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHH
Q ss_conf 9999859998189999999616679963899999616888988872423886467766710189
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSIT 438 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 438 (1255)
+++|.|++||||||+.+.|...+....+. .++..++++.+......+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~~l 128 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQVL 128 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCC-----------------CCEEEEEEEEEECCCHHH
T ss_conf 99996899998768999999997304689-----------------965999521568984588
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.25 E-value=0.018 Score=31.68 Aligned_cols=114 Identities=22% Similarity=0.310 Sum_probs=67.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf 1997999985999818999999961667996389-999961688898887242388646776671018998604999999
Q 000846 371 PAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEV-LLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGAS 449 (1255)
Q Consensus 371 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i-~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~ 449 (1255)
.++-.+.+.||+||||||.+..++...+.....| .+. +|. -+..+..
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiE---------------------dPi----------E~~~~~~- 203 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE---------------------DPI----------EFDIDGI- 203 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE---------------------SSC----------CSCCSSS-
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEC---------------------CCC----------CCCCCCC-
T ss_conf 41054898767877744779998666257874699962---------------------674----------3456788-
Q ss_pred HHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99899999993469999609885201003899988948999999999861299878982778899989799999999986
Q 000846 450 MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV 529 (1255)
Q Consensus 450 ~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~~~~ililDe~ts~lD~~~~~~i~~~i~~~ 529 (1255)
.++.+.+ ..|+.---++..++-.+|+|++..|.. |.++.....++ .
T Consensus 204 -----------------------~q~~v~~-----~~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~a---a 249 (401)
T d1p9ra_ 204 -----------------------GQTQVNP-----RVDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQA---S 249 (401)
T ss_dssp -----------------------EEEECBG-----GGTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHH---H
T ss_pred -----------------------CEEEECC-----CCCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHH---H
T ss_conf -----------------------7026558-----767799999999984138889845768---75999999999---7
Q ss_pred CCCCEEEEEECCCHHHHHCCE
Q ss_conf 089839998149204430398
Q 000846 530 SKGRTTLIIAHRLSTIRTANL 550 (1255)
Q Consensus 530 ~~~~t~i~ith~~~~~~~~d~ 550 (1255)
..|+.|+..-|--+.....+|
T Consensus 250 ~tGhlV~tTlHa~~a~~~~~R 270 (401)
T d1p9ra_ 250 LTGHLVMSTLHTNTAVGAVTR 270 (401)
T ss_dssp HTTCEEEEEECCSSSHHHHHH
T ss_pred HCCCEEEEEECCCCHHHHHHH
T ss_conf 249858998336766766543
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.25 E-value=0.012 Score=33.17 Aligned_cols=49 Identities=16% Similarity=0.345 Sum_probs=35.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHH
Q ss_conf 999995999978899999841268998669989950689898887323088805787873228999
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIREN 1104 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~gTIreN 1104 (1255)
.+||.|++||||||+.+.|..+..-..+ ...+.+|++|.++.+...++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l~~ 130 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVLKE 130 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHHHH
T ss_conf 9999689999876899999999730468-----------------996599952156898458888
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.13 E-value=0.016 Score=32.02 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=22.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199799998599981899999996166
Q 000846 371 PAGKSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 371 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
..+.++.|+|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.08 E-value=0.012 Score=33.15 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999599997889999984126899
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYDPL 1064 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~p~ 1064 (1255)
.++|+|++|||||||++-|.+.+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.96 E-value=0.021 Score=31.18 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=24.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2896999995999978899999841268
Q 000846 1035 EAGKTVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1035 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
++|-.|.|+|.+||||||+.+.|..-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.89 E-value=0.012 Score=33.02 Aligned_cols=42 Identities=36% Similarity=0.275 Sum_probs=29.6
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCEEEECCE
Q ss_conf 886199799998599981899999996166799--638999996
Q 000846 368 LRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPV--EGEVLLDGY 409 (1255)
Q Consensus 368 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~--~G~i~i~g~ 409 (1255)
+.-.+|..+.+.|.|||||||+.+.|...+... .-.+.+||-
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD 62 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 62 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 85899869999899999989999999988777427508997536
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.87 E-value=0.0096 Score=33.86 Aligned_cols=27 Identities=37% Similarity=0.477 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999985999818999999961667
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
+|-.+.++|++||||||+.+.|...+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.78 E-value=0.14 Score=24.59 Aligned_cols=142 Identities=18% Similarity=0.198 Sum_probs=72.9
Q ss_pred CCEEEEEEEEECCC----CCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCCEEEECCEE
Q ss_conf 52899878898899----98875411305897289699999599997889999984--------1268998669989950
Q 000846 1007 GRIELKNVFFAYPT----RPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLE--------RFYDPLKGSVFMDEQD 1074 (1255)
Q Consensus 1007 g~I~~~~Vsf~Y~~----~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~--------rl~~p~~G~I~idG~d 1074 (1255)
+.+++++. ++|- .++..|=+|+++. +.+..+-|.|||.|||||+++.+. |.+-|.+- -.+
T Consensus 10 ~~l~i~~~--rHPlle~~~~~~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~-a~~---- 81 (234)
T d1wb9a2 10 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQK-VEI---- 81 (234)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSE-EEE----
T ss_pred CCEEEEEE--ECCEEECCCCCCCCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCC-EEC----
T ss_conf 96899973--787797446998264057988-9953999954673136899998799999987297674176-661----
Q ss_pred CCCCCHHHHHCCEEEECCCCCCCC-CCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 689898887323088805787873-2289998239988798899999999619999970500123423899999994799
Q 000846 1075 IRNYNLKQLRSHIALVSQEPTLFA-GTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQK 1153 (1255)
Q Consensus 1075 i~~~~~~~lr~~i~~V~Q~~~LF~-gTIreNl~~g~~~~~~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQr 1153 (1255)
+--..+|. --..|++.-+.. .-..|+.
T Consensus 82 ----------------~~~d~I~~~~~~~d~~~~~~S-~F~~E~~----------------------------------- 109 (234)
T d1wb9a2 82 ----------------GPIDRIFTRVGAADDLASGRS-TFMVEMT----------------------------------- 109 (234)
T ss_dssp ----------------CCCCEEEEEEC------------CHHHHH-----------------------------------
T ss_pred ----------------CCCHHHEEEECCCCCCCCCHH-HHHHHHH-----------------------------------
T ss_conf ----------------344202348746753436531-8999999-----------------------------------
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC--CCCEEEEECCCCHHH
Q ss_conf 999999997049988897366789897979999999-99860--997699981591366
Q 000846 1154 QRIALARAILKNPSILLLDEATSALDSVSESLVQEA-LEKMM--MGRTCVVVAHRLSTI 1209 (1255)
Q Consensus 1154 QrlalARAll~~p~ILiLDEaTS~LD~~te~~I~~~-l~~~~--~~~TvI~IaHrl~~i 1209 (1255)
++.-.---..+..++|+||.-++-++.-...+-.+ ++.+. .++.+++.||.....
T Consensus 110 -~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 110 -ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp -HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred -HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf -9999997454660885322235877456667898764543204544289852468776
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.77 E-value=0.026 Score=30.40 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=19.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9799998599981899999996166
Q 000846 373 GKSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 373 g~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
.+.+.|+||||+||+||.+.|...+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7719999989999999999999709
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.75 E-value=0.02 Score=31.30 Aligned_cols=22 Identities=36% Similarity=0.333 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859998189999999616
Q 000846 375 SVGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~ 396 (1255)
.++++|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.74 E-value=0.026 Score=30.47 Aligned_cols=28 Identities=21% Similarity=0.494 Sum_probs=25.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2896999995999978899999841268
Q 000846 1035 EAGKTVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1035 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
|+|-++.|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.62 E-value=0.023 Score=30.78 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=23.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 97999985999818999999961667996
Q 000846 373 GKSVGLVGGSGSGKSTTIALLQRFYDPVE 401 (1255)
Q Consensus 373 g~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 401 (1255)
++.++|.|++||||||+++.|...+....
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 98899989999898999999999998769
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.61 E-value=0.023 Score=30.81 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999818999999961667
Q 000846 376 VGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 376 ~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
+.|+|||||||+||.+.|....+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.60 E-value=0.017 Score=31.93 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859998189999999616
Q 000846 375 SVGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~ 396 (1255)
-+||+|++++|||||++.|.|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.59 E-value=0.027 Score=30.26 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599981899999996166
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
+++++|++|+|||||++.|.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.55 E-value=0.024 Score=30.71 Aligned_cols=25 Identities=40% Similarity=0.383 Sum_probs=22.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999985999818999999961667
Q 000846 374 KSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
..+.|+||+||||||+++.|.+.+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.51 E-value=0.032 Score=29.74 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=23.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999995999978899999841268
Q 000846 1037 GKTVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1037 Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
...|.|.|++||||||+++.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.49 E-value=0.021 Score=31.09 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599981899999996166
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
.+.|+|++||||||+.+.|...+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=93.45 E-value=0.028 Score=30.16 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 289699999599997889999984126
Q 000846 1035 EAGKTVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1035 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
+.+..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.40 E-value=0.028 Score=30.19 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999959999788999998412689
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYDP 1063 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~p 1063 (1255)
.|||.|++||||||+++.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.39 E-value=0.067 Score=27.12 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=25.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH
Q ss_conf 9988897366789897979999999998609976999815913
Q 000846 1165 NPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLS 1207 (1255)
Q Consensus 1165 ~p~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ 1207 (1255)
+.+++++||+-. |.......+.+.+.+...++..|+++++.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCC
T ss_conf 724999424333-454311122100221356643000102111
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.35 E-value=0.03 Score=29.86 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599981899999996166
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
+++++|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.33 E-value=0.029 Score=30.06 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH-HHHHHHHHHHHHCCCCEEEEEECCCHHHH
Q ss_conf 948999999999861299878982778899989-79999999998608983999814920443
Q 000846 485 SGGQKQRIAIARALIRDPKILLLDEATSALDAQ-SERIVQEAIDKVSKGRTTLIIAHRLSTIR 546 (1255)
Q Consensus 485 SgGqkqri~lARal~~~~~ililDe~ts~lD~~-~~~~i~~~i~~~~~~~t~i~ith~~~~~~ 546 (1255)
...++..+..+...+.++++++++=.-..-+.. ......+.+.....++.+|++....+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~ 126 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITG 126 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHH
T ss_conf 520247899999998741332011025654203455544455542014101020465444335
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.32 E-value=0.037 Score=29.19 Aligned_cols=27 Identities=33% Similarity=0.571 Sum_probs=24.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199799998599981899999996166
Q 000846 371 PAGKSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 371 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
|+|-.+.++||+||||||..+.|...|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.29 E-value=0.025 Score=30.54 Aligned_cols=25 Identities=36% Similarity=0.659 Sum_probs=22.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999995999978899999841268
Q 000846 1038 KTVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1038 e~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
.+|+|+|++|||||||++.|..-+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.18 E-value=0.027 Score=30.27 Aligned_cols=24 Identities=38% Similarity=0.419 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799998599981899999996166
Q 000846 374 KSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
+.+.++||+||||||+.+.|...+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.10 E-value=0.046 Score=28.43 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999818999999961667
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
.++++|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.10 E-value=0.034 Score=29.45 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859998189999999616
Q 000846 375 SVGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~ 396 (1255)
.++++|.+++|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.09 E-value=0.03 Score=29.95 Aligned_cols=31 Identities=23% Similarity=0.172 Sum_probs=24.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 6999995999978899999841268998669
Q 000846 1038 KTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068 (1255)
Q Consensus 1038 e~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I 1068 (1255)
..++|.|+.||||||+++.|...+.....++
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 8899989999898999999999998769986
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.09 E-value=0.03 Score=29.90 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=25.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 69999959999788999998412689986699899
Q 000846 1038 KTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDE 1072 (1255)
Q Consensus 1038 e~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG 1072 (1255)
..+.|+|++||||||+++.|.+-+. +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.09 E-value=0.027 Score=30.34 Aligned_cols=23 Identities=43% Similarity=0.419 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999818999999961667
Q 000846 376 VGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 376 ~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
+.|+|||||||+|+.+.|...++
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.1 Score=25.70 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.95 E-value=0.036 Score=29.31 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999859998189999999616
Q 000846 374 KSVGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~~ 396 (1255)
..++|+|++|+|||||++.|.+.
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89999999998899999999679
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.90 E-value=0.024 Score=30.66 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9979999859998189999999616679
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFYDP 399 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 399 (1255)
..-.++|+|+.|+|||||+.-|.+.+..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8328974389999899999999999975
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=92.88 E-value=0.022 Score=31.05 Aligned_cols=21 Identities=48% Similarity=0.688 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859998189999999616
Q 000846 376 VGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 376 ~~ivG~sGsGKSTl~~ll~~~ 396 (1255)
+||+|++++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.83 E-value=0.051 Score=28.10 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=25.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 289699999599997889999984126899866
Q 000846 1035 EAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067 (1255)
Q Consensus 1035 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~ 1067 (1255)
.++-.+-+.||+||||||.+..+++..+....+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 410548987678777447799986662578746
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.81 E-value=0.038 Score=29.14 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=24.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 289699999599997889999984126
Q 000846 1035 EAGKTVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1035 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
|+|-++.|+||.||||||+.+.|..-|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.69 E-value=0.032 Score=29.66 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=25.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCE
Q ss_conf 699999599997889999984126899---866998995
Q 000846 1038 KTVALVGQSGCGKSTIIGLLERFYDPL---KGSVFMDEQ 1073 (1255)
Q Consensus 1038 e~vaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~idG~ 1073 (1255)
..++|+|++|||||||+.-|.+.+... -|.|.-|+-
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 099998099998999999999999867983799983167
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.67 E-value=0.046 Score=28.45 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999995999978899999841268
Q 000846 1038 KTVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1038 e~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
..+.|+||||+||+||.+.|+.-++
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.59 E-value=0.039 Score=28.99 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=31.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCC
Q ss_conf 999995999978899999841268998669989950689898887323088805787873
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFA 1098 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~ 1098 (1255)
.|||.|++||||||+.+.|...+.-.. . ..-...+.+++||.+...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~-------~-------~~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE-------V-------DYRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG-------S-------CGGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC-------C-------CCCCCCEEEEECCCCCCC
T ss_conf 999989997879999999999964101-------3-------457884399934653224
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.59 E-value=0.087 Score=26.24 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699999599997889999984126
Q 000846 1037 GKTVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1037 Ge~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
+=+|||+|++|+|||||++.|++--
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8889999999999999999997787
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.55 E-value=0.045 Score=28.50 Aligned_cols=26 Identities=38% Similarity=0.509 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99799998599981899999996166
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
+...+.|+||+||||||+.+.|...|
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=92.51 E-value=0.022 Score=30.96 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=13.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999859998189999999616
Q 000846 374 KSVGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~~ 396 (1255)
-.++++|++++|||||++.|.+.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 78999889999899999998589
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.40 E-value=0.047 Score=28.39 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859998189999999616
Q 000846 375 SVGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~ 396 (1255)
+++++|.+|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.36 E-value=0.035 Score=29.42 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=22.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199799998599981899999996166
Q 000846 371 PAGKSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 371 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
++.-+++++|++|+|||||++.+.+-.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.31 E-value=0.027 Score=30.27 Aligned_cols=27 Identities=44% Similarity=0.549 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 896999995999978899999841268
Q 000846 1036 AGKTVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1036 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
+|-.+.|+|++||||||+++.|...+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.29 E-value=0.22 Score=23.02 Aligned_cols=112 Identities=19% Similarity=0.256 Sum_probs=53.5
Q ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHHCCCCC
Q ss_conf 38861997999985999818999999961667996389999961688898887242388646776671018998604999
Q 000846 367 NLRVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKD 446 (1255)
Q Consensus 367 ~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~ 446 (1255)
++.-.+...+++|||+|+||||.+--|...+. ..| ++++++.-+.+ +.
T Consensus 5 ~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~------------------~kV~lit~Dt~-------------R~ 52 (213)
T d1vmaa2 5 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEG------------------KSVVLAAADTF-------------RA 52 (213)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTT------------------CCEEEEEECTT-------------CH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------------------CCEEEEEECCC-------------CC
T ss_conf 67999998999989999988999999999999-779------------------90699960133-------------42
Q ss_pred CCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCHHHHHHHHH
Q ss_conf 99999899999993469999609885201003899988948999999999861299878982778-8999897999999
Q 000846 447 GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEAT-SALDAQSERIVQE 524 (1255)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~~~~ililDe~t-s~lD~~~~~~i~~ 524 (1255)
...|++...+ +.+ |........+..+.- -.+-+.+.+..++.+++|.|=|= +.-|..-...+.+
T Consensus 53 -gA~eQL~~~a---------~~l--~i~~~~~~~~~d~~~--~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~ 117 (213)
T d1vmaa2 53 -AAIEQLKIWG---------ERV--GATVISHSEGADPAA--VAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRK 117 (213)
T ss_dssp -HHHHHHHHHH---------HHH--TCEEECCSTTCCHHH--HHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHH
T ss_pred -CHHHHHHHHH---------HHC--CCCCCCCCCCCCHHH--HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf -0467888776---------432--764103677776899--8788789998769998998245533016888899888
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.28 E-value=0.048 Score=28.30 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=21.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199799998599981899999996166
Q 000846 371 PAGKSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 371 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
++-..+.|+||+||||||+.+.|...|
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997289998999999899999999985
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.19 E-value=0.053 Score=27.97 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999985999818999999961667
Q 000846 374 KSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
.+++++|.+||||||+.+.|.+.+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.14 E-value=0.05 Score=28.16 Aligned_cols=21 Identities=52% Similarity=0.795 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
++||+|++||||||+++.|..
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.08 E-value=0.23 Score=22.83 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999985999818999999961667
Q 000846 374 KSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
.-+.+.||+|||||++++.+.+.+.
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 6488766898883599999998739
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.05 E-value=0.041 Score=28.86 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999985999818999999961667
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
+++.++|-|+.||||||++++|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=92.03 E-value=0.055 Score=27.81 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859998189999999616
Q 000846 375 SVGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~ 396 (1255)
++.++|++|+|||||++-+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.02 E-value=0.083 Score=26.38 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=25.1
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 86199799998599981899999996166
Q 000846 369 RVPAGKSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 369 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
-+++|+.+.|.||+||||||++.-++...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.01 E-value=0.043 Score=28.67 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=25.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 96999995999978899999841268998669989
Q 000846 1037 GKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMD 1071 (1255)
Q Consensus 1037 Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~id 1071 (1255)
...+.|+||.||||||+++.|..-| |-+.++
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 9489998999998899999999997----992672
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.01 E-value=0.059 Score=27.60 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999818999999961667
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
.++|-||+||||||..++|...|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=92.00 E-value=0.045 Score=28.48 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999841268
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
++.|+|++||||||+++.|..-+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 798989999998999999999979
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.94 E-value=0.051 Score=28.09 Aligned_cols=44 Identities=27% Similarity=0.450 Sum_probs=28.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC-------------CCCEEEECCEECCCCCHHHHHC
Q ss_conf 999959999788999998412689-------------9866998995068989888732
Q 000846 1040 VALVGQSGCGKSTIIGLLERFYDP-------------LKGSVFMDEQDIRNYNLKQLRS 1085 (1255)
Q Consensus 1040 vaIVG~SGSGKSTL~~lL~rl~~p-------------~~G~I~idG~di~~~~~~~lr~ 1085 (1255)
+.|+|||||||+||.+.|+.-++. ..|+ .||+|.--++.....+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~~ 60 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKS 60 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTC--CBTTTEEECCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--CCCCCCEECCHHHHHH
T ss_conf 99989999998999999997488662477764268999997--5784324324889999
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.92 E-value=0.058 Score=27.65 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599981899999996166
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
+++++|++|+|||||++.+.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.88 E-value=0.24 Score=22.67 Aligned_cols=88 Identities=18% Similarity=0.130 Sum_probs=50.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCH
Q ss_conf 28969999959999788999998412689986699899506898988873230888057878732289998239988798
Q 000846 1035 EAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARE 1114 (1255)
Q Consensus 1035 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~gTIreNl~~g~~~~~~ 1114 (1255)
+.-+.+-++|+.||||||+++-++.-. |-+.|+. +.++ +.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~~----~~~~i~~--------D~~~----------------------------~~ 51 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNR--------DTLG----------------------------SW 51 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGGG----TCEEEEH--------HHHC----------------------------SH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC----CCEEECH--------HHHH----------------------------HH
T ss_conf 999899998999998999999999765----9789760--------7777----------------------------88
Q ss_pred HHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 89999999961999997050012342389999999479999-99999970499888973
Q 000846 1115 SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQR-IALARAILKNPSILLLD 1172 (1255)
Q Consensus 1115 ~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQr-lalARAll~~p~ILiLD 1172 (1255)
..+.+.++ ..+..|.+..+. ..+++-.+|++ +.+|+..=-+..++.+|
T Consensus 52 ~~~~~~~~--------~~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 52 QRCVSSCQ--------AALRQGKRVVID--NTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHH--------HHHHTTCCEEEE--SCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHH--------HHHHCCCCCEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 89999999--------999779995551--76799999999999998558887999948
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=91.85 E-value=0.053 Score=27.96 Aligned_cols=25 Identities=40% Similarity=0.534 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999995999978899999841268
Q 000846 1038 KTVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1038 e~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
..+.|+|++||||||+.++|..-+.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7499989999999999999999969
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=91.84 E-value=0.054 Score=27.90 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997889999984126
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
+++|+|++|+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.84 E-value=0.14 Score=24.60 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=17.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7999985999818999999961
Q 000846 374 KSVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
-+++++|++|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3899999899298999999971
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=91.79 E-value=0.11 Score=25.32 Aligned_cols=27 Identities=52% Similarity=0.790 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999985999818999999961667
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
++..++++||+|+||||.+--|...+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 977999989999988999999999999
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.76 E-value=0.041 Score=28.83 Aligned_cols=117 Identities=18% Similarity=0.214 Sum_probs=61.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCHH
Q ss_conf 89699999599997889999984126899866998995068989888732308880578787322899982399887988
Q 000846 1036 AGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARES 1115 (1255)
Q Consensus 1036 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~gTIreNl~~g~~~~~~~ 1115 (1255)
+-..+.|+||.||||||+++.|..-| |-+.|+.- +-+|+.+ .+...-....+++-..-+. ...+.
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~g-------dl~R~~~---~~~~~~~~~~i~~~~~~~~-~~~~~ 71 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAG-------DLLRAEQ---GRAGSQYGELIKNCIKEGQ-IVPQE 71 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHH-------HHHHHHH---HSTTCSCHHHHHHHHHTTC-CCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH---HHCCCHHHHHHHHHHHCCC-CCCCH
T ss_conf 97289998999999899999999985----99088535-------8999886---2010178899887640000-23203
Q ss_pred HHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99999999619999970500123423899999994799999999997049988897366
Q 000846 1116 EIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEA 1174 (1255)
Q Consensus 1116 ~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll~~p~ILiLDEa 1174 (1255)
.........-...... .-+..+-++ +-....|...+.+.+.....++.||=+
T Consensus 72 ~~~~~~~~~~~~~~~~----~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 72 ITLALLRNAISDNVKA----NKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHHHHHHHT----TCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHHHCC----CCCCEEEEC---CCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 6789999998864003----777535404---313689999999861545543125798
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=91.74 E-value=0.063 Score=27.37 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859998189999999616
Q 000846 376 VGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 376 ~~ivG~sGsGKSTl~~ll~~~ 396 (1255)
+||+|++.+|||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=91.69 E-value=0.081 Score=26.46 Aligned_cols=24 Identities=38% Similarity=0.780 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999841268
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
.++|+|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=91.65 E-value=0.062 Score=27.42 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599981899999996166
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
.+.++|++||||||+.+.|...+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39998999998899999999983
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.61 E-value=0.065 Score=27.21 Aligned_cols=21 Identities=52% Similarity=0.797 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
++||+|+.||||||+++.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.56 E-value=0.058 Score=27.63 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97999985999818999999961667
Q 000846 373 GKSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 373 g~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
.-+++|-|+.||||||+++.|...+.
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 61999889999888999999998707
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.51 E-value=0.059 Score=27.56 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799998599981899999996166
Q 000846 374 KSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
+.+.++|++||||||+.+.|...+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.51 E-value=0.097 Score=25.87 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=25.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 97289699999599997889999984126
Q 000846 1033 KIEAGKTVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1033 ~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
-+++|+.+-|.|++||||||++.-++.-.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.40 E-value=0.057 Score=27.72 Aligned_cols=28 Identities=36% Similarity=0.535 Sum_probs=24.0
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 6199799998599981899999996166
Q 000846 370 VPAGKSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 370 i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
+..+..+.+.||+||||||+.+.|...|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.25 E-value=0.1 Score=25.65 Aligned_cols=43 Identities=9% Similarity=0.199 Sum_probs=22.6
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 12998789827788999897999999999860898399981492044
Q 000846 499 IRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTI 545 (1255)
Q Consensus 499 ~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~ 545 (1255)
..+.+++|+|-.. .. .+.+..+.+.+.+. ++-+++|-......
T Consensus 133 ~~~~d~~l~~~~~-~~-~~~d~~l~~~l~~~--~k~~~~V~nK~D~~ 175 (400)
T d1tq4a_ 133 FYEYDFFIIISAT-RF-KKNDIDIAKAISMM--KKEFYFVRTKVDSD 175 (400)
T ss_dssp GGGCSEEEEEESS-CC-CHHHHHHHHHHHHT--TCEEEEEECCHHHH
T ss_pred HHCCEEEEEECCC-CC-CHHHHHHHHHHHHC--CCCEEEEEECCCCC
T ss_conf 3226599996588-88-78899999999976--99879997086321
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.09 E-value=0.2 Score=23.41 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|.+|+|||||++-+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=91.05 E-value=0.11 Score=25.30 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599981899999996166
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.02 E-value=0.08 Score=26.51 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997889999984126
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
+++|+|++|+||||++|.|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.98 E-value=0.21 Score=23.20 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|++|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.98 E-value=0.13 Score=24.77 Aligned_cols=33 Identities=39% Similarity=0.426 Sum_probs=25.4
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 5111038861997999985999818999999961
Q 000846 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 362 ~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
.++...+.+ .|.-+.+.|+||+||||+...+..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.96 E-value=0.062 Score=27.40 Aligned_cols=23 Identities=43% Similarity=0.509 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995999978899999841268
Q 000846 1040 VALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1040 vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
+.|+|||||||+||++.|...++
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.87 E-value=0.098 Score=25.80 Aligned_cols=29 Identities=28% Similarity=0.187 Sum_probs=24.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 19979999859998189999999616679
Q 000846 371 PAGKSVGLVGGSGSGKSTTIALLQRFYDP 399 (1255)
Q Consensus 371 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 399 (1255)
++|.+++|.|+-||||||++++|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.86 E-value=0.093 Score=26.01 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599981899999996166
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
.+.|.||+||||||..+.|...|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.85 E-value=0.066 Score=27.17 Aligned_cols=117 Identities=20% Similarity=0.222 Sum_probs=64.0
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 72896999995999978899999841268998669989950689898887323088805787873228999823998879
Q 000846 1034 IEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADAR 1113 (1255)
Q Consensus 1034 I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~gTIreNl~~g~~~~~ 1113 (1255)
++.+..+.|+||.||||||+++.|..-| |-..|+.-+ -+|+.+ ...+ ....++.+.+.-+. ..+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~-------llr~~~---~~~~-~~~~~~~~~~~~~~-~~~ 68 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGD-------LLRAEV---SSGS-ARGKMLSEIMEKGQ-LVP 68 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHH-------HHHHHH---HHTC-HHHHHHHHHHTTTC-CCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCH-------HHHHHH---HHHH-HHHHHHHHHHHHCC-CCC
T ss_conf 4678289998999998799999999986----984683347-------899999---8767-65145677776313-776
Q ss_pred HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 8899999999619999970500123423899999994799999999997049988897366
Q 000846 1114 ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEA 1174 (1255)
Q Consensus 1114 ~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll~~p~ILiLDEa 1174 (1255)
++.+....... +...+...+..+-+ .+..-..|--.+.+.+.....++.+|.+
T Consensus 69 ~~~~~~~~~~~-----l~~~~~~~~g~ild---g~pr~~~qa~~~~~~~~~~~~~~~~~~~ 121 (194)
T d3adka_ 69 LETVLDMLRDA-----MVAKVDTSKGFLID---GYPREVKQGEEFERKIGQPTLLLYVDAG 121 (194)
T ss_dssp HHHHHHHHHHH-----HHTTTTTCSCEEEE---SCCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHEEEEEHHHH-----HHHCCCCCCCCEEE---ECCCHHHHHHHHHHHHCCCCCHHCCCCC
T ss_conf 22244102456-----64032235660243---1110157899999983775200003331
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.85 E-value=0.085 Score=26.33 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=25.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 979999859998189999999616679963899999
Q 000846 373 GKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDG 408 (1255)
Q Consensus 373 g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g 408 (1255)
...+.++||+||||||+++.|.+.+.. +-+.+++
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEC
T ss_conf 979998897998899999999998651--5489832
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.85 E-value=0.1 Score=25.72 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=90.85 E-value=0.065 Score=27.25 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599981899999996166
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
.+.|.||+||||||+.+.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.74 E-value=0.041 Score=28.81 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97999985999818999999961667
Q 000846 373 GKSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 373 g~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
.-+++|.|+|||||||+.+.+...+.
T Consensus 4 ~pIIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 4 HPIISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 88999989997809999999999971
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.67 E-value=0.067 Score=27.14 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599981899999996166
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
+++|.|+.||||||+...|...+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.65 E-value=0.086 Score=26.27 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=25.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9979999859998189999999616679963899999
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDG 408 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g 408 (1255)
|+.-+.++||+|||||.+++.+.+.+.. --+.+++
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~ 82 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEA 82 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCC--CHHCCCC
T ss_conf 9866999899998888999998621322--1000344
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.57 E-value=0.16 Score=24.07 Aligned_cols=33 Identities=33% Similarity=0.404 Sum_probs=24.5
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 5111038861997999985999818999999961
Q 000846 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 362 ~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
.++...+. -.|.-+.++|+||+||||+...+..
T Consensus 4 ~lH~~~v~-~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLVD-IYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEE-ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 28999999-9999999980899998999999998
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.53 E-value=0.1 Score=25.71 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599981899999996166
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
.+.|+||+||||||+.+.|...|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.45 E-value=0.022 Score=31.04 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859998189999999616
Q 000846 375 SVGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~ 396 (1255)
+++++|++++|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.40 E-value=0.073 Score=26.83 Aligned_cols=22 Identities=45% Similarity=0.401 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599981899999996166
Q 000846 376 VGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 376 ~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
+.++|++||||||+.++|...+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=90.38 E-value=0.058 Score=27.62 Aligned_cols=44 Identities=32% Similarity=0.274 Sum_probs=32.5
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC-C-CCCEEEECCEECCC
Q ss_conf 72896999995999978899999841268-9-98669989950689
Q 000846 1034 IEAGKTVALVGQSGCGKSTIIGLLERFYD-P-LKGSVFMDEQDIRN 1077 (1255)
Q Consensus 1034 I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-p-~~G~I~idG~di~~ 1077 (1255)
=++|-.+-+.|.|||||||+.+.|..-+. . .--.+.+||-+++.
T Consensus 21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 8998699998999999899999999887774275089975367887
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=90.33 E-value=0.11 Score=25.34 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997889999984126
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
+|+++|++|+|||||++.|.|-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.32 E-value=0.11 Score=25.50 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999859998189999999616
Q 000846 374 KSVGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~~ 396 (1255)
..++++|+.|+|||||++.+.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.28 E-value=0.066 Score=27.18 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 896999995999978899999841268
Q 000846 1036 AGKTVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1036 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
++..++|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.27 E-value=0.094 Score=25.97 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999998412
Q 000846 1039 TVALVGQSGCGKSTIIGLLERF 1060 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl 1060 (1255)
.|+|||++|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=90.20 E-value=0.11 Score=25.35 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599981899999996166
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
.+.|+||.||||||+.+.|...|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.11 E-value=0.26 Score=22.42 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|..|+|||||++-+..
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=90.10 E-value=0.35 Score=21.46 Aligned_cols=26 Identities=46% Similarity=0.505 Sum_probs=19.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97999985999818999999961667
Q 000846 373 GKSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 373 g~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
...+.++||+|+||||.+--|...+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 86899989999988999999999999
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.07 E-value=0.091 Score=26.09 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999959999788999998412689
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYDP 1063 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~p 1063 (1255)
.++|-||+||||||++++|..-|..
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~ 29 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGF 29 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997899987989999999999699
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=89.99 E-value=0.083 Score=26.41 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999985999818999999961667
Q 000846 374 KSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
+++.|.|++||||||+++.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989899898999999999998
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.95 E-value=0.11 Score=25.27 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999998412
Q 000846 1039 TVALVGQSGCGKSTIIGLLERF 1060 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl 1060 (1255)
+|+|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=89.95 E-value=0.1 Score=25.72 Aligned_cols=31 Identities=32% Similarity=0.565 Sum_probs=23.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 69999959999788999998412689986699899
Q 000846 1038 KTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDE 1072 (1255)
Q Consensus 1038 e~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG 1072 (1255)
+.+-++|++||||||+.+.|..-+. --++|+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg----~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALG----YEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT----CEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHC----CCEEEH
T ss_conf 9889988999988999999999949----987865
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=89.79 E-value=0.0063 Score=35.34 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=28.8
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 511103886199799998599981899999996166
Q 000846 362 VLQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 362 ~l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
.+++.++.+.+| ++.|+|++||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.78 E-value=0.096 Score=25.88 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999841268
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
.+.++|++||||||+++.|.+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=89.78 E-value=0.12 Score=25.15 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9979999859998189999999616
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~ 396 (1255)
+.=+++++|.+|||||||++-+.+-
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8579999999998989999999668
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=89.76 E-value=0.13 Score=24.85 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997889999984126
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
+|+++|++|+|||||++.|+|-.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.72 E-value=0.24 Score=22.65 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|.+|+|||||++-+..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=89.71 E-value=0.13 Score=24.77 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999818999999961667
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
.++|.||+||||+|..+.|...|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.64 E-value=0.1 Score=25.74 Aligned_cols=116 Identities=16% Similarity=0.191 Sum_probs=56.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHH
Q ss_conf 99999599997889999984126899866998995068989888732308880578787322899982399887988999
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIK 1118 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~gTIreNl~~g~~~~~~~~i~ 1118 (1255)
++.|+||.||||||.++.|..-| |=..|+. -+-+|..+ .+....+.-.+.+.+.-+. ..+|+.+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~~-~v~d~~~~ 67 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEGK-IVPVEITI 67 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTTC-CCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECH-------HHHHHHHH---HHHHHHHHHHHHHHHHCCC-CCCCCHHH
T ss_conf 99997999999899999999986----9926768-------89999988---7620468999999970697-21134036
Q ss_pred HHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--CE-EEEECC
Q ss_conf 999996199999705001234238999999947999999999970499--88-897366
Q 000846 1119 KAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNP--SI-LLLDEA 1174 (1255)
Q Consensus 1119 ~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll~~p--~I-LiLDEa 1174 (1255)
..+... +........ .-+..+.. | +.-.+.|...+.+.+-... .+ +++|.+
T Consensus 68 ~~~~~~-~~~~~~~~~-~~~~~~~~-g--~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~ 121 (194)
T d1teva_ 68 SLLKRE-MDQTMAANA-QKNKFLID-G--FPRNQDNLQGWNKTMDGKADVSFVLFFDCN 121 (194)
T ss_dssp HHHHHH-HHHHHHHCT-TCCEEEEE-S--CCCSHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred HHHHHH-HCCCCHHHH-CCCCEEEC-C--CHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 788876-412100011-24511101-1--030489999986442105543389962476
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=89.61 E-value=0.095 Score=25.92 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997889999984126
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
++.|.||.||||||+++.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.60 E-value=0.1 Score=25.75 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=6.0
Q ss_pred CCEEEEECCCCC
Q ss_conf 987898277889
Q 000846 502 PKILLLDEATSA 513 (1255)
Q Consensus 502 ~~ililDe~ts~ 513 (1255)
|.|+++||.=+.
T Consensus 116 ~~IIf~DEIdki 127 (309)
T d1ofha_ 116 NGIVFIDEIDKI 127 (309)
T ss_dssp HCEEEEECGGGG
T ss_pred CCEEEEHHHHHH
T ss_conf 856884246454
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=89.60 E-value=0.12 Score=25.11 Aligned_cols=22 Identities=36% Similarity=0.714 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999998412
Q 000846 1039 TVALVGQSGCGKSTIIGLLERF 1060 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl 1060 (1255)
.+||+|.+||||||+++.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=89.60 E-value=0.13 Score=24.80 Aligned_cols=21 Identities=48% Similarity=0.635 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++|+|..||||||+.+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.59 E-value=0.15 Score=24.43 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=25.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9979999859998189999999616679
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFYDP 399 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 399 (1255)
+|.++++-|+-||||||++++|...+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.48 E-value=0.1 Score=25.76 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=22.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999995999978899999841268
Q 000846 1038 KTVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1038 e~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
-.|+|-|..||||||++++|.+.+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.47 E-value=0.1 Score=25.67 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999841268
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
++.|+|+.||||||+++.|..-|.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988999998999999999879
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.46 E-value=0.15 Score=24.26 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999985999818999999961667
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
+|.++++-|+.||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=89.46 E-value=0.12 Score=25.23 Aligned_cols=29 Identities=34% Similarity=0.581 Sum_probs=23.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 999995999978899999841268998669989
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYDPLKGSVFMD 1071 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~id 1071 (1255)
.+.|+|++||||||+.++|...+ |--++|
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d 30 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLD 30 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEE
T ss_conf 39998999998899999999983----998783
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=89.42 E-value=0.21 Score=23.20 Aligned_cols=32 Identities=38% Similarity=0.425 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 111038861997999985999818999999961
Q 000846 363 LQGLNLRVPAGKSVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 363 l~~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
++...+ --.|.-+.+.|+||+||||+...+..
T Consensus 6 ~H~~~v-~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHGVLV-DVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EESEEE-EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEE-EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 889999-99999999980899999999999998
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.41 E-value=0.18 Score=23.81 Aligned_cols=28 Identities=29% Similarity=0.255 Sum_probs=24.2
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8619979999859998189999999616
Q 000846 369 RVPAGKSVGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 369 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 396 (1255)
-+++|+.+.|.|++||||||++.-++-.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9869969999838999889999999998
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.41 E-value=0.13 Score=24.84 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999818999999961667
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
.+.++||+||||||..+.|...+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899987999998999999999869
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=89.34 E-value=0.11 Score=25.54 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999841268
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
++.|+|+.||||||+++.|..-|.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988999987999999999879
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.33 E-value=0.14 Score=24.66 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|++|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.32 E-value=0.16 Score=24.04 Aligned_cols=28 Identities=29% Similarity=0.237 Sum_probs=24.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2896999995999978899999841268
Q 000846 1035 EAGKTVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1035 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
++|-.++|-|+-||||||++++|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=89.32 E-value=0.14 Score=24.58 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=23.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999985999818999999961667996
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFYDPVE 401 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~~~~~ 401 (1255)
.+.+.||+|+||||+++++...+....
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~ 63 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNI 63 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 489879999738899999985038885
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.31 E-value=0.16 Score=24.13 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=23.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 972896999995999978899999841
Q 000846 1033 KIEAGKTVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1033 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
-+++|+.+-|.|++||||||++.-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=89.28 E-value=0.17 Score=24.01 Aligned_cols=41 Identities=37% Similarity=0.596 Sum_probs=27.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 28969999959999788999998412689986699899506
Q 000846 1035 EAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDI 1075 (1255)
Q Consensus 1035 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di 1075 (1255)
+++..+++|||+|+||||.+.=|...+.-..-++.+=..|.
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt 44 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 44 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 99779999899999889999999999997799079998136
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.22 E-value=0.17 Score=23.92 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 896999995999978899999841268
Q 000846 1036 AGKTVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1036 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
+|..++|-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.08 E-value=0.15 Score=24.44 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799998599981899999996166
Q 000846 374 KSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
-.++|+|+..+|||||++.|.+..
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHC
T ss_conf 879999699854999999998236
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.97 E-value=0.17 Score=23.83 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 79999859998189999999616679
Q 000846 374 KSVGLVGGSGSGKSTTIALLQRFYDP 399 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~~~~~ 399 (1255)
..+.+.||+|+||||+++++++.+..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 44999879999888999999999875
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.94 E-value=0.15 Score=24.30 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999998412
Q 000846 1039 TVALVGQSGCGKSTIIGLLERF 1060 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl 1060 (1255)
.+||+|..||||||+++.|..+
T Consensus 4 iIgITG~igSGKStv~~~l~~~ 25 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTDL 25 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9998888878899999999987
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.89 E-value=0.14 Score=24.46 Aligned_cols=47 Identities=21% Similarity=0.378 Sum_probs=35.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCC
Q ss_conf 7999985999818999999961667996389999961688898887242388646776
Q 000846 374 KSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPV 431 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~ 431 (1255)
+-+.++||||||||-|++.|.++.+.- =+..|...++ ..|||..+..
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT---------eaGYvG~DVe 96 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT---------EVGYVGKEVD 96 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCTH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCEEE---------ECCEEECCHH
T ss_conf 647998999988999999999873898--8986255114---------1111104445
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=88.88 E-value=0.42 Score=20.80 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=32.6
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCE
Q ss_conf 8619979999859998189999999616679963-8999996
Q 000846 369 RVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEG-EVLLDGY 409 (1255)
Q Consensus 369 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~i~i~g~ 409 (1255)
-++.|.++-+.||+||||||+...++...+...| -+++|..
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 866754789805876522799999999997079989999887
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=88.87 E-value=0.13 Score=24.97 Aligned_cols=51 Identities=25% Similarity=0.238 Sum_probs=33.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHCCCEEE
Q ss_conf 999985999818999999961667--9963899999616888988872423886
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFYD--PVEGEVLLDGYKIRRLHLKWLRSQMGLV 426 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~~--~~~G~i~i~g~~~~~~~~~~~r~~i~~v 426 (1255)
.++++|+.|+|||||...|+.... ...|++. +|....++...+..+++++-
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~ 56 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVR 56 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEE
T ss_conf 999994889809999999999709755306622-22113562698887387687
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=88.83 E-value=0.13 Score=24.81 Aligned_cols=27 Identities=41% Similarity=0.539 Sum_probs=21.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999985999818999999961667
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
+-..+++|||+|+||||.+--|...+.
T Consensus 8 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 8 APFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 997999989999998999999999999
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.82 E-value=0.32 Score=21.70 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=18.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7999985999818999999961
Q 000846 374 KSVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
=+++++|.+|+|||||++-+.+
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899789999999971
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=88.79 E-value=0.13 Score=24.80 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999959999788999998412689
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYDP 1063 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~p 1063 (1255)
.++|-||.||||||+.+.|..-|..
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl 29 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQW 29 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8997799988989999999999699
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=88.79 E-value=0.0057 Score=35.69 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=26.9
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 41130589728969999959999788999998412
Q 000846 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERF 1060 (1255)
Q Consensus 1026 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl 1060 (1255)
..++.++.+.+| .+.|+|+|||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 870279974998-0899889999879999999999
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=88.70 E-value=0.11 Score=25.43 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999841268
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
.+.|.|++||||||+++.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989899898999999999998
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.70 E-value=0.16 Score=24.02 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=88.70 E-value=0.094 Score=25.97 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999998412
Q 000846 1039 TVALVGQSGCGKSTIIGLLERF 1060 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl 1060 (1255)
.|||+|++++|||||++.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.70 E-value=0.36 Score=21.35 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=88.65 E-value=0.15 Score=24.43 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7999985999818999999961
Q 000846 374 KSVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
=+++++|++|+|||||++-+.+
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999999899999999964
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=88.63 E-value=0.16 Score=24.04 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999998412
Q 000846 1039 TVALVGQSGCGKSTIIGLLERF 1060 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl 1060 (1255)
|+.++|++|+|||||++-|.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.63 E-value=0.17 Score=23.89 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999998412
Q 000846 1039 TVALVGQSGCGKSTIIGLLERF 1060 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl 1060 (1255)
.|+|+|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.62 E-value=0.18 Score=23.77 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599981899999996166
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
.+.|.||+||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.61 E-value=0.3 Score=21.92 Aligned_cols=21 Identities=33% Similarity=0.446 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=88.57 E-value=0.29 Score=22.07 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 997999985999818999999961667996
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFYDPVE 401 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 401 (1255)
+...+.|.||+|+||||+++.+...+....
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~~~ 71 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKDKT 71 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 888168889899989999999999975446
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=88.56 E-value=0.17 Score=23.98 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999998412
Q 000846 1039 TVALVGQSGCGKSTIIGLLERF 1060 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl 1060 (1255)
+++|||++|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.41 E-value=0.18 Score=23.63 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8969999959999788999998412689
Q 000846 1036 AGKTVALVGQSGCGKSTIIGLLERFYDP 1063 (1255)
Q Consensus 1036 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p 1063 (1255)
+|..++|-|.-||||||++++|......
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.41 E-value=0.16 Score=24.19 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599981899999996166
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
.++++|...||||||++.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.40 E-value=0.16 Score=24.03 Aligned_cols=24 Identities=42% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999841268
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
++.++|++||||||+.++|..-+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 489988999988999999999849
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=88.34 E-value=0.15 Score=24.27 Aligned_cols=120 Identities=11% Similarity=0.052 Sum_probs=56.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCHHHH
Q ss_conf 69999959999788999998412689986699899506898988873230888057878732289998239988798899
Q 000846 1038 KTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEI 1117 (1255)
Q Consensus 1038 e~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~gTIreNl~~g~~~~~~~~i 1117 (1255)
.-+-++||.||||||+++.|.+-... +-+.+++ ..+|+.. +. ..+..+... ....+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~--------d~~~~~~------~~-~~~~~~~~~-----~~~~~~~ 90 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN--------DTFKQQH------PN-FDELVKLYE-----KDVVKHV 90 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT--------HHHHTTS------TT-HHHHHHHHG-----GGCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEC--------HHHHHHH------CC-CCCCCHHHH-----HHHHHHH
T ss_conf 79998897998899999999998651--5489832--------8999985------25-764113306-----7899998
Q ss_pred HHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH
Q ss_conf 999999619999970500123423899999994799999999997049988897366789897979
Q 000846 1118 KKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183 (1255)
Q Consensus 1118 ~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll~~p~ILiLDEaTS~LD~~te 1183 (1255)
...............+..+.+. +.+.+...+--..+.+ +.+......+.+..++...+..-.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~ 152 (273)
T d1gvnb_ 91 TPYSNRMTEAIISRLSDQGYNL-VIEGTGRTTDVPIQTA---TMLQAKGYETKMYVMAVPKINSYL 152 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCE-EECCCCCCSHHHHHHH---HHHHTTTCEEEEEEECCCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHH---HHHHHCCCEEEEEECCCCCHHHHH
T ss_conf 7543212899999998617897-5455556567899999---999876974999744787202222
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.31 E-value=0.19 Score=23.44 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|++|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.28 E-value=0.17 Score=23.84 Aligned_cols=110 Identities=18% Similarity=0.143 Sum_probs=51.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHH
Q ss_conf 99999599997889999984126899866998995068989888732308880578787322899982399887988999
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIK 1118 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~gTIreNl~~g~~~~~~~~i~ 1118 (1255)
++.|+|+.||||||..+.|..-|.. ..++.-+ -+|+... ...-....+++-+.-+.. .+++.+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~----~~i~~~~-------llr~~~~----~~~~~~~~i~~~~~~g~~-~~d~~v~ 65 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGI----PQISTGD-------MLRAAVK----SGSELGKQAKDIMDAGKL-VTDELVI 65 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC----CEEEHHH-------HHHHHHH----HTCTTTGGGHHHHHHTCC-CCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC----CEECHHH-------HHHHHHC----CCCHHHHHHHHHHHCCCC-CCCHHHH
T ss_conf 8999879999989999999998699----5551014-------7677550----398589999999976998-7116399
Q ss_pred HHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE-EEEECC
Q ss_conf 99999619999970500123423899999994799999999997049988-897366
Q 000846 1119 KAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSI-LLLDEA 1174 (1255)
Q Consensus 1119 ~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll~~p~I-LiLDEa 1174 (1255)
..+. +..... +.-+..+-.+. .-+.. |--++... ..+|.+ +.||=|
T Consensus 66 ~~~~-----~~~~~~-~~~~g~i~~g~-pr~~~--~~~~~~~~-~~~~~~vi~L~~~ 112 (179)
T d1e4va1 66 ALVK-----ERIAQE-DCRNGFLLDGF-PRTIP--QADAMKEA-GINVDYVLEFDVP 112 (179)
T ss_dssp HHHH-----HHHTSG-GGGGCEEEESC-CCSHH--HHHHHHHT-TCCCSEEEEEECC
T ss_pred HHHH-----HHHCCC-CCCCCEEECCC-CCCHH--HHHHHHHC-CCCCEEEEEECCC
T ss_conf 9999-----852252-10166342244-53057--76554440-6870399984462
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.27 E-value=0.13 Score=24.72 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=22.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 289699999599997889999984126
Q 000846 1035 EAGKTVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1035 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
++.-|+++||++|+|||||++.|.+-.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.25 E-value=0.26 Score=22.48 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999818999999961667
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
++.++|.+|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.22 E-value=0.18 Score=23.76 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599981899999996166
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
.+++||..+||||||++.|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.20 E-value=0.18 Score=23.69 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.18 E-value=0.18 Score=23.66 Aligned_cols=21 Identities=43% Similarity=0.657 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|+.|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=88.17 E-value=0.18 Score=23.66 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.15 E-value=0.2 Score=23.36 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.8
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 6199799998599981899999996
Q 000846 370 VPAGKSVGLVGGSGSGKSTTIALLQ 394 (1255)
Q Consensus 370 i~~g~~~~ivG~sGsGKSTl~~ll~ 394 (1255)
+++|+.+.|.|++||||||+..-++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 5588799998589898899999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.11 E-value=0.2 Score=23.39 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99799998599981899999996166
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
.+..+.|.||+|+|||||++-++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.05 E-value=0.4 Score=20.90 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
++.++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.02 E-value=0.22 Score=23.09 Aligned_cols=28 Identities=14% Similarity=0.028 Sum_probs=24.6
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8619979999859998189999999616
Q 000846 369 RVPAGKSVGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 369 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 396 (1255)
-+++|+.+.|.|++|||||++..-++..
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9768979999889988788999999999
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.98 E-value=0.21 Score=23.17 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=24.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 972896999995999978899999841
Q 000846 1033 KIEAGKTVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1033 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
-+++|+.+-|.|++|||||++..-++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.98 E-value=0.18 Score=23.79 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|++|+|||||++-+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799899999999980
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=87.95 E-value=0.18 Score=23.67 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=32.8
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEE
Q ss_conf 86199799998599981899999996166799638-9999961
Q 000846 369 RVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE-VLLDGYK 410 (1255)
Q Consensus 369 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~-i~i~g~~ 410 (1255)
-+++|..+.+.||+||||||++..++.......|. +++|...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9667358998057774789999999999870898799986544
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.89 E-value=0.39 Score=21.05 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=87.88 E-value=0.26 Score=22.38 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997889999984126
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
+++++|+.|+|||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=87.85 E-value=0.15 Score=24.30 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=28.9
Q ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1038861997999985999818999999961667
Q 000846 365 GLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 365 ~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
|.=+.+-+|++.+|.|++|+|||+|+..+.+-..
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4125645787556867999887899999999775
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.78 E-value=0.22 Score=23.09 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999841268
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
++.|.|+.||||||+.+.|..-|.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988999997999999999989
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.70 E-value=0.25 Score=22.61 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 97289699999599997889999984
Q 000846 1033 KIEAGKTVALVGQSGCGKSTIIGLLE 1058 (1255)
Q Consensus 1033 ~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1058 (1255)
-+++|+.+-|.|++||||||+..-++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.60 E-value=0.21 Score=23.21 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997889999984126
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
|++++|++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.59 E-value=0.18 Score=23.69 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999818999999961667
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
+++++|.+|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=87.51 E-value=0.12 Score=25.01 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999788999998412
Q 000846 1040 VALVGQSGCGKSTIIGLLERF 1060 (1255)
Q Consensus 1040 vaIVG~SGSGKSTL~~lL~rl 1060 (1255)
|||+|++|+|||||++.|.|-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=87.51 E-value=0.21 Score=23.19 Aligned_cols=25 Identities=24% Similarity=0.561 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999985999818999999961667
Q 000846 374 KSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
=.+.|+||.||||||+.+.|+.-|.
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1699988999987999999999979
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.48 E-value=0.46 Score=20.45 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999995999978899999841-----26899866
Q 000846 1039 TVALVGQSGCGKSTIIGLLER-----FYDPLKGS 1067 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~r-----l~~p~~G~ 1067 (1255)
|++++|.+|+|||||++-+.+ -|.|+-|.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~ 37 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED 37 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 8999998997989999999709998763761331
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.41 E-value=0.28 Score=22.22 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=24.9
Q ss_pred CCCCEEE-EECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 5111038-86199799998599981899999996
Q 000846 362 VLQGLNL-RVPAGKSVGLVGGSGSGKSTTIALLQ 394 (1255)
Q Consensus 362 ~l~~~~~-~i~~g~~~~ivG~sGsGKSTl~~ll~ 394 (1255)
-|+++-- -+++|+.+.|.|++|+|||+++.-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 7988556899698399999479999999999999
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.40 E-value=0.29 Score=22.02 Aligned_cols=162 Identities=14% Similarity=0.083 Sum_probs=74.6
Q ss_pred CCCCCEEE-EEECCCEEEEECCCCCCHHHHHH-HHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHH
Q ss_conf 54113058-97289699999599997889999-98412689986699899506898988873230888057878732289
Q 000846 1025 MILKGLSL-KIEAGKTVALVGQSGCGKSTIIG-LLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIR 1102 (1255)
Q Consensus 1025 ~vL~~isl-~I~~Ge~vaIVG~SGSGKSTL~~-lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~gTIr 1102 (1255)
+-|+++-- -+++|+.+-|.|++|+|||+++. ++..........+.+... +.+.. .++
T Consensus 13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~---e~~~~------------------~~~ 71 (242)
T d1tf7a1 13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF---EETPQ------------------DII 71 (242)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES---SSCHH------------------HHH
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCC---CCCHH------------------HHH
T ss_conf 779885568996983999994799999999999999999856887420126---67999------------------999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHC--CCCCEEEEECCCCCCC
Q ss_conf 9982399887988999999996199999705001234238999999947999-999999970--4998889736678989
Q 000846 1103 ENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQ-RIALARAIL--KNPSILLLDEATSALD 1179 (1255)
Q Consensus 1103 eNl~~g~~~~~~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQ-rlalARAll--~~p~ILiLDEaTS~LD 1179 (1255)
....-. ....++..+. + ....-......+.-..++..... .+.-.+..+ .+|+++++|-.++-.+
T Consensus 72 ~~~~~~--~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~ 139 (242)
T d1tf7a1 72 KNARSF--GWDLAKLVDE----G------KLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQ 139 (242)
T ss_dssp HHHGGG--TCCHHHHHHT----T------SEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTST
T ss_pred HHHHHC--CCCHHHHHHH----C------CHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999984--9984898871----4------302444210335444430245899999999998863122200207889987
Q ss_pred HHH----HHHHHHHH-HHHC-CCCEEEEECCCCH---------HHH-HCCEEEEEE
Q ss_conf 797----99999999-9860-9976999815913---------664-128799995
Q 000846 1180 SVS----ESLVQEAL-EKMM-MGRTCVVVAHRLS---------TIQ-KSDTIAVIK 1219 (1255)
Q Consensus 1180 ~~t----e~~I~~~l-~~~~-~~~TvI~IaHrl~---------~i~-~~DrI~vl~ 1219 (1255)
... .......+ +... .++|+++++|... ... .+|.++.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 140 QYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 60572678999999999998639716884210255422246762335362999988
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.33 E-value=0.23 Score=22.94 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|.+|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.30 E-value=0.22 Score=22.95 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859998189999999616
Q 000846 375 SVGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~ 396 (1255)
.+||||.+.+|||||++.|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.30 E-value=0.24 Score=22.72 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=30.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHH
Q ss_conf 9999959999788999998412689986699899506898988873230888057878732289998
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENI 1105 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~gTIreNl 1105 (1255)
.+||-|+.|||||||...|.....- .......+.++++|.+..+..=|+.|
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~----------------~~~~~~~v~~iS~DdfY~t~~~r~~L 79 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLME----------------KYGGEKSIGYASIDDFYLTHEDQLKL 79 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH----------------HHGGGSCEEEEEGGGGBCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH----------------HHCCCCCEEEECCCCCCCCHHHHHHH
T ss_conf 9983799878899999999999998----------------72778606763567777888999998
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=87.19 E-value=0.3 Score=21.95 Aligned_cols=31 Identities=23% Similarity=0.141 Sum_probs=24.4
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8619979999859998189999999616679
Q 000846 369 RVPAGKSVGLVGGSGSGKSTTIALLQRFYDP 399 (1255)
Q Consensus 369 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 399 (1255)
..++|..+.+.|+-||||||+.+.+.+-+..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=87.07 E-value=0.25 Score=22.57 Aligned_cols=110 Identities=17% Similarity=0.274 Sum_probs=54.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCHHHH
Q ss_conf 69999959999788999998412689986699899506898988873230888057878732289998239988798899
Q 000846 1038 KTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEI 1117 (1255)
Q Consensus 1038 e~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~gTIreNl~~g~~~~~~~~i 1117 (1255)
=++.|+|+-||||||+.+.|..-|. -..|+-- +-+|+.+ ++..-+...+.+.+..+. ..+++.+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~g----~~~is~g-------dllr~~~----~~~~~~~~~~~~~~~~~~-~v~~~~~ 70 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHFE----LKHLSSG-------DLLRDNM----LRGTEIGVLAKTFIDQGK-LIPDDVM 70 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHBC----CEEEEHH-------HHHHHHH----HTTCHHHHHHHHHHHTTC-CCCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC----CEEECHH-------HHHHHHH----HHHHHHHHHHHHHHHHHH-HCCCHHH
T ss_conf 1699988999987999999999979----8687189-------9999998----740156689998763664-1330344
Q ss_pred HHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999999619999970500123423899999994799999999997049988897366
Q 000846 1118 KKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEA 1174 (1255)
Q Consensus 1118 ~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll~~p~ILiLDEa 1174 (1255)
....+ ..+... +...-.+ + | +-.-..|.-.+.+ .+.-..++.||-+
T Consensus 71 ~~l~~-~~~~~~-----~~~~~il-d-G--fPr~~~q~~~l~~-~~~~~~vi~L~v~ 116 (189)
T d2ak3a1 71 TRLVL-HELKNL-----TQYNWLL-D-G--FPRTLPQAEALDR-AYQIDTVINLNVP 116 (189)
T ss_dssp HHHHH-HHHHHH-----TTSCEEE-E-S--CCCSHHHHHHHHT-TCCCCEEEEEECC
T ss_pred HHHHH-HHHHHH-----HHCCCCC-C-C--CCCHHHHHHHHHH-CCCCEEEEEEECC
T ss_conf 54455-544212-----1058424-4-5--2100067887631-5753299997244
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=87.01 E-value=0.26 Score=22.41 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=24.6
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 6199799998599981899999996166
Q 000846 370 VPAGKSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 370 i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
+++|+.+.|.|++|+|||++..-++--.
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6288599999179999899999999999
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.00 E-value=0.27 Score=22.34 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999841268
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
.+-+.||+|+||||+++++++...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.99 E-value=0.24 Score=22.77 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|++|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999399999999962
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=86.97 E-value=0.29 Score=22.07 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=23.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 972896999995999978899999841
Q 000846 1033 KIEAGKTVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1033 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
-+++|+.+-|.|++|+||||++.-++-
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 862885999991799998999999999
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=86.87 E-value=0.54 Score=19.91 Aligned_cols=95 Identities=23% Similarity=0.331 Sum_probs=49.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCCHH
Q ss_conf 99799998599981899999996166799638999996168889888724238864677667101899860499999999
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMD 451 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~ 451 (1255)
....+++|||+|+||||.+-=|...+.. .| .+++++.-+.+ +. ...+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~-~g------------------~kV~lit~Dt~-------------R~-ga~e 57 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYKK-KG------------------FKVGLVGADVY-------------RP-AALE 57 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHHH-TT------------------CCEEEEECCCS-------------SH-HHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH-CC------------------CCEEEEEEECC-------------CC-CHHH
T ss_conf 9989999899999989999999999997-79------------------93699972023-------------55-1567
Q ss_pred HHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 899999993469999609885201003899988948999999999861299878982778899
Q 000846 452 DVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSAL 514 (1255)
Q Consensus 452 ~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~~~~ililDe~ts~l 514 (1255)
++..-++ +. |......+....+..- .+=++..+...+.++++.| |++.
T Consensus 58 QL~~~a~-------~l----~v~~~~~~~~~~~~~~--~~~a~~~~~~~~~d~IlID--TaGr 105 (211)
T d1j8yf2 58 QLQQLGQ-------QI----GVPVYGEPGEKDVVGI--AKRGVEKFLSEKMEIIIVD--TAGR 105 (211)
T ss_dssp HHHHHHH-------HH----TCCEECCTTCCCHHHH--HHHHHHHHHHTTCSEEEEE--CCCS
T ss_pred HHHHHCC-------CC----CCCEEECCCCHHHHHH--HHHHHHHHHCCCCCEEEEE--CCCC
T ss_conf 8987401-------46----8422302441024478--9999987402677369985--3776
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=86.86 E-value=0.26 Score=22.44 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999998412
Q 000846 1039 TVALVGQSGCGKSTIIGLLERF 1060 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl 1060 (1255)
.+||+|..||||||..+.|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.85 E-value=0.24 Score=22.68 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=86.82 E-value=0.23 Score=22.85 Aligned_cols=10 Identities=30% Similarity=0.567 Sum_probs=4.2
Q ss_pred CCCEEEEECC
Q ss_conf 9987898277
Q 000846 501 DPKILLLDEA 510 (1255)
Q Consensus 501 ~~~ililDe~ 510 (1255)
+..+..+||-
T Consensus 249 ~~~~~~~dei 258 (443)
T d1g41a_ 249 QNGIVFIDEI 258 (443)
T ss_dssp HHCEEEEETG
T ss_pred CCCCCCCCHH
T ss_conf 2675554223
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=86.77 E-value=0.24 Score=22.73 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=38.0
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHHCCEEE
Q ss_conf 89728969999959999788999998412689986-69989950689898887323088
Q 000846 1032 LKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG-SVFMDEQDIRNYNLKQLRSHIAL 1089 (1255)
Q Consensus 1032 l~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G-~I~idG~di~~~~~~~lr~~i~~ 1089 (1255)
=-+++|..+-|.|++||||||++.-++.-..-..| -++||...- ++.. +-+.+++
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~--~~~~-~a~~~Gv 104 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA--LDPI-YARKLGV 104 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CCHH-HHHHTTC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC--CCHH-HHHHHCC
T ss_conf 996673589980577747899999999998708987999865445--4899-9998399
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.64 E-value=0.23 Score=22.81 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|.+|+|||||++-+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.64 E-value=0.23 Score=22.81 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=86.57 E-value=0.39 Score=21.01 Aligned_cols=33 Identities=36% Similarity=0.433 Sum_probs=26.2
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4113058972896999995999978899999841
Q 000846 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1026 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
.++.-.+.+ .|.-+.|.|+||+||||++..|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.53 E-value=0.27 Score=22.28 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999959999788999998412
Q 000846 1038 KTVALVGQSGCGKSTIIGLLERF 1060 (1255)
Q Consensus 1038 e~vaIVG~SGSGKSTL~~lL~rl 1060 (1255)
..|+|+|+.|+|||||++.|.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.41 E-value=0.27 Score=22.25 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799998599981899999996166
Q 000846 374 KSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
.+++|.|+-||||||+.+.|...+
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~ 25 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 899997999988999999999868
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=86.31 E-value=0.57 Score=19.70 Aligned_cols=77 Identities=10% Similarity=0.120 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEE
Q ss_conf 947999999999970499888973667898979799999-99998609976999815913664128799995989988
Q 000846 1149 SGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ-EALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVE 1225 (1255)
Q Consensus 1149 SgGQrQrlalARAll~~p~ILiLDEaTS~LD~~te~~I~-~~l~~~~~~~TvI~IaHrl~~i~~~DrI~vl~~G~ive 1225 (1255)
...+......+...++++.+++++=.-..-+...+...+ +.++....++.+|++..+.+........--...-.+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~~~~~~~ 141 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIR 141 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 520247899999998741332011025654203455544455542014101020465444335588798727996799
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.31 E-value=0.39 Score=21.03 Aligned_cols=28 Identities=36% Similarity=0.533 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC
Q ss_conf 99998599981899999996--16679963
Q 000846 375 SVGLVGGSGSGKSTTIALLQ--RFYDPVEG 402 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~--~~~~~~~G 402 (1255)
++.++|.+|+|||||++-+. ..+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 999998999998999998846898887241
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.29 E-value=0.24 Score=22.78 Aligned_cols=26 Identities=27% Similarity=0.147 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99799998599981899999996166
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
|=..++++||.++|||||++.|.|..
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 87999988999997999999980998
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.24 E-value=0.28 Score=22.18 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHH-CCC
Q ss_conf 99998599981899999996-166
Q 000846 375 SVGLVGGSGSGKSTTIALLQ-RFY 397 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~-~~~ 397 (1255)
+++++|.+|+|||||++-+. +.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~ 27 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRF 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999999298999999973999
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.21 E-value=0.46 Score=20.43 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999859998189999999616679963
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFYDPVEG 402 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G 402 (1255)
++.++|..|+|||||++-+....-|+.|
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~ 31 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTG 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 9999999998889999988408979724
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=86.20 E-value=0.24 Score=22.76 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999818999999961667
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
.+.+.||+|+||||+++++.+.+.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 389889799878889999999849
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=86.17 E-value=0.58 Score=19.65 Aligned_cols=28 Identities=39% Similarity=0.618 Sum_probs=20.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2896999995999978899999841268
Q 000846 1035 EAGKTVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1035 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
+....+++|||+|+||||.+.=|...+.
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9998999989999998999999999999
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.14 E-value=0.51 Score=20.13 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
++.++|.+|+|||+|++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=86.08 E-value=0.43 Score=20.70 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=24.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 969999959999788999998412689986
Q 000846 1037 GKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066 (1255)
Q Consensus 1037 Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G 1066 (1255)
...+-|.||.|+||||+++.+.+.+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=86.08 E-value=0.33 Score=21.59 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999841268
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
-+-+.||.|+|||++++.+.+...
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=85.97 E-value=0.24 Score=22.68 Aligned_cols=35 Identities=37% Similarity=0.570 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 89699999599997889999984126899866998
Q 000846 1036 AGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFM 1070 (1255)
Q Consensus 1036 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~i 1070 (1255)
+-..+++|||+|+||||.+.=|...+.-..-+|.+
T Consensus 8 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~l 42 (211)
T d2qy9a2 8 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 42 (211)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99799998999999899999999999977994799
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=85.90 E-value=0.26 Score=22.38 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997889999984126
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
.+||+|+..+|||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=85.81 E-value=0.19 Score=23.58 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=19.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 997999985999818999999961
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+.=+++++|++|+|||||++-+.+
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 668999999999988999988733
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=85.80 E-value=0.15 Score=24.39 Aligned_cols=39 Identities=18% Similarity=0.378 Sum_probs=27.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCC
Q ss_conf 9999959999788999998412689986699899506898988873230888057878
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTL 1096 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~L 1096 (1255)
.+||.|.|||||||+.+.|...+... | -...+|.||.+-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-~------------------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-G------------------VKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-T------------------CCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C------------------CCEEEEECCCCC
T ss_conf 99998999780999999999997156-9------------------976999477787
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=85.77 E-value=0.28 Score=22.13 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=26.6
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 861997999985999818999999961667
Q 000846 369 RVPAGKSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 369 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
.++++..+.++||+|+|||++.+.+++++.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899767699989999888999999999859
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=85.76 E-value=0.28 Score=22.18 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9999599997889999984126899
Q 000846 1040 VALVGQSGCGKSTIIGLLERFYDPL 1064 (1255)
Q Consensus 1040 vaIVG~SGSGKSTL~~lL~rl~~p~ 1064 (1255)
+-+.||.|+||||+++++..-+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 8987999973889999998503888
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.67 E-value=0.24 Score=22.68 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599981899999996166
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
.+.+.||.||||||+.+.|...|
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=85.67 E-value=0.19 Score=23.55 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=19.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 289699999599997889999984126
Q 000846 1035 EAGKTVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1035 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
++...+++|||+|+||||.+.=|...+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999899998999998899999999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.64 E-value=0.61 Score=19.46 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=23.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCEE
Q ss_conf 999995999978899999841-----268998669
Q 000846 1039 TVALVGQSGCGKSTIIGLLER-----FYDPLKGSV 1068 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~r-----l~~p~~G~I 1068 (1255)
|+.++|.+|+|||||++-+.. -|.|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 89999999979999999997399885457664520
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.61 E-value=0.33 Score=21.60 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=23.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999959999788999998412689986699899
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDE 1072 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG 1072 (1255)
++.|+|+-||||||+.+.|.--| |-..|+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~~ 33 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLAT 33 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEEEC
T ss_conf 99998999999899999999996----9945834
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.61 E-value=0.28 Score=22.14 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=18.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7999985999818999999961
Q 000846 374 KSVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
.++.++|.+|+|||||++-+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899388999999971
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.55 E-value=0.33 Score=21.65 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999818999999961667
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.55 E-value=0.31 Score=21.83 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.53 E-value=0.29 Score=22.10 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999818999999961667
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
.+.+.||+|+||||+++.++..+.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 699978999748799999999987
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.40 E-value=0.3 Score=21.93 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|.+|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.38 E-value=0.42 Score=20.79 Aligned_cols=33 Identities=33% Similarity=0.464 Sum_probs=27.5
Q ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 103886199799998599981899999996166
Q 000846 365 GLNLRVPAGKSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 365 ~~~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
|.-+.+-+|++.+|.|++|+|||+|+.-+..-.
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~ 92 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 92 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 102563678877766799989899999999988
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.37 E-value=0.29 Score=22.10 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599981899999996166
Q 000846 376 VGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 376 ~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
+.+.||+|+||||+++.+++.+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.37 E-value=0.35 Score=21.40 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89699999599997889999984126
Q 000846 1036 AGKTVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1036 ~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
.+..+.|+|++|+|||||++-++.-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=85.36 E-value=0.39 Score=21.04 Aligned_cols=32 Identities=25% Similarity=0.211 Sum_probs=28.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 97289699999599997889999984126899
Q 000846 1033 KIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064 (1255)
Q Consensus 1033 ~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~ 1064 (1255)
..+||..+.+.|+=||||||+++.+.+-+...
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~ 60 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 57998299996687765889999987642234
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.36 E-value=0.3 Score=22.00 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999859998189999999616
Q 000846 374 KSVGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~~ 396 (1255)
=.++|||.+.+|||||++.|.+-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 37999789999899999999778
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=85.34 E-value=0.32 Score=21.74 Aligned_cols=26 Identities=27% Similarity=0.357 Sum_probs=21.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 28969999959999788999998412
Q 000846 1035 EAGKTVALVGQSGCGKSTIIGLLERF 1060 (1255)
Q Consensus 1035 ~~Ge~vaIVG~SGSGKSTL~~lL~rl 1060 (1255)
++.=++.+||+.|||||||++.|.+-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=85.30 E-value=0.23 Score=22.86 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999859998189999999616
Q 000846 374 KSVGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~~ 396 (1255)
=+++|||-..+|||||++.|.+-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=85.28 E-value=0.26 Score=22.43 Aligned_cols=26 Identities=42% Similarity=0.565 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99799998599981899999996166
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
..-.++|.|+.|+|||||+.-+...+
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 81598611799888999999999987
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.25 E-value=0.38 Score=21.11 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999985999818999999961667
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
+..-+.+.||+|||||++++.+.+...
T Consensus 37 ~~~giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 37 PPRGILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 886468766998883089999998748
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.16 E-value=0.64 Score=19.30 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=29.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 998789827788999897999999999860898399981492044
Q 000846 501 DPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTI 545 (1255)
Q Consensus 501 ~~~ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~ 545 (1255)
+.+++++||.- .+.......+.+.+.+..+....+++++....+
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CEEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHH
T ss_conf 71899996632-000237899998863112002320126708775
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=85.15 E-value=0.14 Score=24.48 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699999599997889999984126
Q 000846 1037 GKTVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1037 Ge~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
.-+|+|+|++++|||||++.|.+-.
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.07 E-value=0.24 Score=22.69 Aligned_cols=45 Identities=20% Similarity=0.283 Sum_probs=28.8
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf 4998889736678989797999999999860997699981591366
Q 000846 1164 KNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTI 1209 (1255)
Q Consensus 1164 ~~p~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~~i 1209 (1255)
.+..++++||.-. +.......+...+......+..|.++++.+.+
T Consensus 108 ~~~~iilide~d~-~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i 152 (231)
T d1iqpa2 108 ASFKIIFLDEADA-LTQDAQQALRRTMEMFSSNVRFILSCNYSSKI 152 (231)
T ss_dssp CSCEEEEEETGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CCCEEEEEHHHHH-CCHHHHHHHHHHCCCCCCCEEEEECCCCHHHC
T ss_conf 8722886143443-12147898764112477644788614876656
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.05 E-value=0.34 Score=21.53 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|..|+|||||++-+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.94 E-value=0.32 Score=21.74 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|+.|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.93 E-value=0.35 Score=21.41 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.91 E-value=0.31 Score=21.88 Aligned_cols=74 Identities=19% Similarity=0.387 Sum_probs=46.1
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCC
Q ss_conf 86199799998599981899999996166799638-99999616888988872423886467766710189986049999
Q 000846 369 RVPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGE-VLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDG 447 (1255)
Q Consensus 369 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~-i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~ 447 (1255)
-++.|..+.+.||+||||||++..+........|. ++||... .++.++.+ ++|. + -+|+.+..+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~-~~Gv---D--------~d~il~~~~- 120 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAK-KLGV---D--------TDSLLVSQP- 120 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHH-HHTC---C--------GGGCEEECC-
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHH-HHCC---C--------HHHEEEECC-
T ss_conf 8666336999648874889999999998754898899998976--67999999-8099---8--------899589669-
Q ss_pred CCHHHHHHHH
Q ss_conf 9999899999
Q 000846 448 ASMDDVISAA 457 (1255)
Q Consensus 448 ~~~~~~~~~~ 457 (1255)
.+.|++.+.+
T Consensus 121 ~~~E~~~~~~ 130 (269)
T d1mo6a1 121 DTGEQALEIA 130 (269)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
T ss_conf 9899999999
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.60 E-value=0.34 Score=21.55 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=84.55 E-value=0.3 Score=21.96 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHH-CCCCCCCCEEEEC
Q ss_conf 9799998599981899999996-1667996389999
Q 000846 373 GKSVGLVGGSGSGKSTTIALLQ-RFYDPVEGEVLLD 407 (1255)
Q Consensus 373 g~~~~ivG~sGsGKSTl~~ll~-~~~~~~~G~i~i~ 407 (1255)
...+.|+|++|||||++++.+. ..+....+-+.+|
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD 85 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 85 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 265899907999689999999999984799889996
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.55 E-value=0.39 Score=21.05 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999841268
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
.|+|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.44 E-value=0.33 Score=21.60 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 997999985999818999999961667996389999
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLD 407 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~ 407 (1255)
|.....++||+|+|||.|++.|...+.. --+.+|
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d 84 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFD 84 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCC--CEEEEC
T ss_conf 7658999778750069999999863367--706741
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.43 E-value=0.38 Score=21.09 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999841
Q 000846 1039 TVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
|++++|++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.38 E-value=0.5 Score=20.21 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHH-HCCCCCCCC
Q ss_conf 79999859998189999999-616679963
Q 000846 374 KSVGLVGGSGSGKSTTIALL-QRFYDPVEG 402 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll-~~~~~~~~G 402 (1255)
-++.++|.+|+|||||++-+ .+.+.|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 779999899998899999895098278888
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.36 E-value=0.38 Score=21.13 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999841
Q 000846 1039 TVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
|+.++|.+|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.36 E-value=0.38 Score=21.13 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|.+|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.33 E-value=0.27 Score=22.36 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599997889999984126
Q 000846 1040 VALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1040 vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
+-+.||+|+||||+++++.+-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.26 E-value=0.34 Score=21.50 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=29.0
Q ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 99998599981899999996---166799638999996168889888724238
Q 000846 375 SVGLVGGSGSGKSTTIALLQ---RFYDPVEGEVLLDGYKIRRLHLKWLRSQMG 424 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~---~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 424 (1255)
.++|+|+.|||||||...|+ |..+ ..|++. +|....++...+..++++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~s 58 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGIT 58 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCC-CCCCEE-CCCEEEECCHHHHHCCCC
T ss_conf 999995898998999999999648534-023365-184698565888751886
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.25 E-value=0.39 Score=21.07 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHH-CCC
Q ss_conf 99998599981899999996-166
Q 000846 375 SVGLVGGSGSGKSTTIALLQ-RFY 397 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~-~~~ 397 (1255)
+++++|+.|+|||||++-+. +.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~~~ 31 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDGAF 31 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999999299999999971998
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.96 E-value=0.4 Score=20.93 Aligned_cols=21 Identities=19% Similarity=0.291 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|.+|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=83.90 E-value=0.64 Score=19.33 Aligned_cols=29 Identities=34% Similarity=0.280 Sum_probs=22.7
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 58972896999995999978899999841
Q 000846 1031 SLKIEAGKTVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1031 sl~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
++-.-.|.-+.|+|+||+||||++..|..
T Consensus 8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 8 VLVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99999999999980899998999999998
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=83.81 E-value=0.43 Score=20.71 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997889999984126
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
.+++||...||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.78 E-value=0.26 Score=22.48 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|++|+|||||++-+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999088999999984
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.73 E-value=0.43 Score=20.71 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999841
Q 000846 1039 TVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
|++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=83.67 E-value=0.45 Score=20.53 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599981899999996166
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
.+|++|+..+|||||++.|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=83.59 E-value=0.43 Score=20.72 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997889999984126
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
.+||+|+..||||||++.|++-.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.48 E-value=0.24 Score=22.66 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|.+|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=83.44 E-value=0.3 Score=21.98 Aligned_cols=26 Identities=31% Similarity=0.167 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97999985999818999999961667
Q 000846 373 GKSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 373 g~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
-..+.+.||+|||||++++.+.....
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 80799889699988999999862010
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.32 E-value=0.76 Score=18.73 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999841
Q 000846 1039 TVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
|+.++|++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=83.28 E-value=0.4 Score=20.94 Aligned_cols=173 Identities=21% Similarity=0.204 Sum_probs=88.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHCCEEEECCCCCC-CCCCHHHHH--HCCCCCCC
Q ss_conf 999995999978899999841268--9986699899506898988873230888057878-732289998--23998879
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYD--PLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTL-FAGTIRENI--AYGKADAR 1113 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~L-F~gTIreNl--~~g~~~~~ 1113 (1255)
.+||+|+.|||||||+..|+..-. ...|++. +|..+.+....+..+.+++-+.-..+ +.+ .+-|+ +.|..+..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~-~~~n~iDtPGh~dF~ 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLDAPGYGDFV 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEECCCSGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCC-CCEEEECCCCHHHHH
T ss_conf 999994889809999999999709755306622-221135626988873876875102222343-210688068155433
Q ss_pred HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHHH
Q ss_conf 8899999999619999970500123423899999994799999999997049988897---3667898979799999999
Q 000846 1114 ESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLL---DEATSALDSVSESLVQEAL 1190 (1255)
Q Consensus 1114 ~~~i~~al~~a~l~~~i~~lp~gldt~ige~G~~LSgGQrQrlalARAll~~p~ILiL---DEaTS~LD~~te~~I~~~l 1190 (1255)
. ++..++..+. +-=-.|. .......+-++.+-.|+. .+.|.++++ |.+ -|.. . ....+
T Consensus 82 ~-e~~~al~~~D----------~avlvvd-a~~Gv~~~t~~~~~~~~~-~~~p~~i~iNk~D~~---~~~~--~-~l~~~ 142 (267)
T d2dy1a2 82 G-EIRGALEAAD----------AALVAVS-AEAGVQVGTERAWTVAER-LGLPRMVVVTKLDKG---GDYY--A-LLEDL 142 (267)
T ss_dssp H-HHHHHHHHCS----------EEEEEEE-TTTCSCHHHHHHHHHHHH-TTCCEEEEEECGGGC---CCHH--H-HHHHH
T ss_pred H-HHHHHHCCCC----------CEEEEEE-CCCCCCCHHHHHHHHHHH-CCCCCCCCCCCCCCC---CCCH--H-HHHHH
T ss_conf 5-5654312467----------3389842-357742115788776554-044310133320222---2101--2-34468
Q ss_pred HHHCCCCEE-EEECCC----CHHH-H-HCCEEEEEECCEEEEECCHHHHH
Q ss_conf 986099769-998159----1366-4-12879999598998825977898
Q 000846 1191 EKMMMGRTC-VVVAHR----LSTI-Q-KSDTIAVIKNGRVVEQGSHNELV 1233 (1255)
Q Consensus 1191 ~~~~~~~Tv-I~IaHr----l~~i-~-~~DrI~vl~~G~ive~G~~~eLl 1233 (1255)
++.+. +.+ +.+-.. ...+ . ...+.+..++|.-.+..-|.++.
T Consensus 143 ~~~lg-~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~ 191 (267)
T d2dy1a2 143 RSTLG-PILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEER 191 (267)
T ss_dssp HHHHC-SEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGH
T ss_pred HHHHC-CCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECCHHHH
T ss_conf 88746-58676860025883268762476548996189874540777789
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=83.28 E-value=0.39 Score=21.01 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=22.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 6999995999978899999841268998669989
Q 000846 1038 KTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMD 1071 (1255)
Q Consensus 1038 e~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~id 1071 (1255)
..+||.|.-||||||.++.|..-+ |-..+|
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf 899997999988999999999868----985980
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.24 E-value=0.5 Score=20.20 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999841
Q 000846 1039 TVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
|+.++|..|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.19 E-value=0.77 Score=18.69 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=31.1
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 98789827788999897999999999860898399981492044
Q 000846 502 PKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTI 545 (1255)
Q Consensus 502 ~~ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~ 545 (1255)
.+|+++||+=. ++......+.+.+.+...+...|++|++.+.+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 87999978110-89999999999985689886999973885636
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.17 E-value=0.43 Score=20.69 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997889999984126
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
.+++||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=83.08 E-value=0.39 Score=21.00 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=15.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997889999984126
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
.+-+.||.|+|||++++.+..-.
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 79988969998899999986201
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=83.06 E-value=0.4 Score=20.97 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=23.0
Q ss_pred EEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 05897289699999599997889999984126
Q 000846 1030 LSLKIEAGKTVALVGQSGCGKSTIIGLLERFY 1061 (1255)
Q Consensus 1030 isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1061 (1255)
.=+.|-+|++.+|+|++|+|||||+..+.+-.
T Consensus 36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ECCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 12564578755686799988789999999977
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.02 E-value=0.47 Score=20.42 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999841
Q 000846 1039 TVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
|+.++|.+|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.88 E-value=0.48 Score=20.34 Aligned_cols=21 Identities=43% Similarity=0.792 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999841
Q 000846 1039 TVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
|+++||+.|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=82.86 E-value=0.79 Score=18.60 Aligned_cols=44 Identities=7% Similarity=0.181 Sum_probs=28.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 998789827788999897999999999860898399981492044
Q 000846 501 DPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTI 545 (1255)
Q Consensus 501 ~~~ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~ 545 (1255)
+.+|+++||+-. +...+...+.+.+.+-.++...|++|++.+.+
T Consensus 108 ~~kviIide~d~-l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~l 151 (207)
T d1a5ta2 108 GAKVVWVTDAAL-LTDAAANALLKTLEEPPAETWFFLATREPERL 151 (207)
T ss_dssp SCEEEEESCGGG-BCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred CCCEEEECHHHH-HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf 640477313442-00001499999998501111045530686551
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.79 E-value=0.5 Score=20.19 Aligned_cols=74 Identities=14% Similarity=0.258 Sum_probs=47.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCC
Q ss_conf 97289699999599997889999984126899866-99899506898988873230888057878732289998239988
Q 000846 1033 KIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS-VFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKAD 1111 (1255)
Q Consensus 1033 ~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~-I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~gTIreNl~~g~~~ 1111 (1255)
-++.|..+-|.|++||||||++.-+.....-..|. |+||... .++...+ +++++=+ +|+.+..|+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a-~~~GvD~-----------d~il~~~~~ 121 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYA-KKLGVDT-----------DSLLVSQPD 121 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHH-HHHTCCG-----------GGCEEECCS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHH-HHHCCCH-----------HHEEEECCC
T ss_conf 8666336999648874889999999998754898899998976--6799999-9809988-----------995896699
Q ss_pred CCHHHHHHHH
Q ss_conf 7988999999
Q 000846 1112 ARESEIKKAA 1121 (1255)
Q Consensus 1112 ~~~~~i~~al 1121 (1255)
+.|++.+.+
T Consensus 122 -~~E~~~~~~ 130 (269)
T d1mo6a1 122 -TGEQALEIA 130 (269)
T ss_dssp -SHHHHHHHH
T ss_pred -CHHHHHHHH
T ss_conf -899999999
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.78 E-value=0.79 Score=18.57 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999841
Q 000846 1039 TVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
|+.+||.+|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.61 E-value=0.45 Score=20.51 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|.+|+|||||++-+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999699999999971
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=82.56 E-value=0.45 Score=20.53 Aligned_cols=18 Identities=33% Similarity=0.660 Sum_probs=7.5
Q ss_pred EECCCCCCHHHHHHHHHC
Q ss_conf 995999978899999841
Q 000846 1042 LVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1042 IVG~SGSGKSTL~~lL~r 1059 (1255)
+.||.|+||||+++++.+
T Consensus 40 l~GPpG~GKTtla~~la~ 57 (239)
T d1ixsb2 40 LFGPPGLGKTTLAHVIAH 57 (239)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
T ss_conf 889799878889999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=82.50 E-value=0.43 Score=20.72 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6999995999978899999841
Q 000846 1038 KTVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1038 e~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
=++++||+.|+|||||++.+.+
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999999899999999964
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.37 E-value=0.47 Score=20.39 Aligned_cols=28 Identities=36% Similarity=0.535 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCCCCC
Q ss_conf 9999959999788999998412-----689986
Q 000846 1039 TVALVGQSGCGKSTIIGLLERF-----YDPLKG 1066 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl-----~~p~~G 1066 (1255)
|++++|.+|+|||||++-+.+- ++|+.|
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~ 37 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE 37 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999799899999999980988986577410
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=82.31 E-value=0.51 Score=20.08 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999841
Q 000846 1039 TVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
++.++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.28 E-value=0.61 Score=19.51 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=12.1
Q ss_pred HHHHHCCCCCEEEEECCCCCCC
Q ss_conf 9998612998789827788999
Q 000846 494 IARALIRDPKILLLDEATSALD 515 (1255)
Q Consensus 494 lARal~~~~~ililDe~ts~lD 515 (1255)
...|-...|.|+++||.=+-..
T Consensus 90 f~~A~~~~p~il~iDeid~l~~ 111 (258)
T d1e32a2 90 FEEAEKNAPAIIFIDELDAIAP 111 (258)
T ss_dssp HHHHHHTCSEEEEESSGGGTCC
T ss_pred HHHHHHCCCEEEEEHHHHHHCC
T ss_conf 9999864994998521113225
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.27 E-value=0.52 Score=20.05 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999998412
Q 000846 1039 TVALVGQSGCGKSTIIGLLERF 1060 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl 1060 (1255)
|+.+||.+|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.13 E-value=0.53 Score=20.00 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999818999999961
Q 000846 375 SVGLVGGSGSGKSTTIALLQR 395 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~ 395 (1255)
+++++|.+|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999899899999999970
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.07 E-value=0.79 Score=18.59 Aligned_cols=24 Identities=38% Similarity=0.678 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999841268
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
|+.++|.+|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=82.02 E-value=0.84 Score=18.37 Aligned_cols=32 Identities=25% Similarity=0.165 Sum_probs=25.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99998599981899999996166799638999
Q 000846 375 SVGLVGGSGSGKSTTIALLQRFYDPVEGEVLL 406 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i 406 (1255)
.+.+-|+-|+||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99998886678999999999986569976998
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.94 E-value=0.59 Score=19.59 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999841268
Q 000846 1039 TVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
|+.++|.+|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=81.71 E-value=0.53 Score=19.95 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=25.2
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 619979999859998189999999616679963899999
Q 000846 370 VPAGKSVGLVGGSGSGKSTTIALLQRFYDPVEGEVLLDG 408 (1255)
Q Consensus 370 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g 408 (1255)
.+++. +.++||||+|||-+.+.|+.+++. .-+.+|-
T Consensus 66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~~~--~~ir~D~ 101 (364)
T d1um8a_ 66 LSKSN-ILLIGPTGSGKTLMAQTLAKHLDI--PIAISDA 101 (364)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHHHTTC--CEEEEEG
T ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHCCC--CEEEHHH
T ss_conf 78753-244189986378999999864435--3311122
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.65 E-value=0.41 Score=20.90 Aligned_cols=44 Identities=23% Similarity=0.365 Sum_probs=27.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 998789827788999897999999999860898399981492044
Q 000846 501 DPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTI 545 (1255)
Q Consensus 501 ~~~ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~ 545 (1255)
+.+++++||.-. +.......+...+.........+++++..+.+
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHCCCCCCCEEEEECCCCHHHH
T ss_conf 359999824432-32157787752011233333665314743021
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.62 E-value=0.58 Score=19.67 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999841
Q 000846 1039 TVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
|+.+||.+|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=81.59 E-value=0.13 Score=24.74 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999998412
Q 000846 1039 TVALVGQSGCGKSTIIGLLERF 1060 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~rl 1060 (1255)
+++++|++|+|||||++.|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.55 E-value=0.53 Score=20.00 Aligned_cols=38 Identities=24% Similarity=0.446 Sum_probs=26.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCEEC
Q ss_conf 6999995999978899999841-----26899866-----99899506
Q 000846 1038 KTVALVGQSGCGKSTIIGLLER-----FYDPLKGS-----VFMDEQDI 1075 (1255)
Q Consensus 1038 e~vaIVG~SGSGKSTL~~lL~r-----l~~p~~G~-----I~idG~di 1075 (1255)
-|++++|.+|+|||||++.+.. -+.|+.|. +.+||.++
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 52 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY 52 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEEE
T ss_conf 389999989929899999997198885447542113103883176798
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.51 E-value=0.4 Score=20.95 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999818999999961667
Q 000846 376 VGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 376 ~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
+.+.||+|+||||+++++.+.+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=81.39 E-value=0.39 Score=21.01 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799998599981899999996166
Q 000846 374 KSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
=++.++|++|+|||||++-+..-.
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999987899999984488
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=81.24 E-value=0.83 Score=18.41 Aligned_cols=32 Identities=38% Similarity=0.375 Sum_probs=24.7
Q ss_pred CCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 113058972896999995999978899999841
Q 000846 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1027 L~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
++. ++-.-.|.-+.|.|+||+||||++..|..
T Consensus 6 ~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEE-EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 889-99999999999980899999999999998
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=81.19 E-value=0.9 Score=18.16 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999995999978899999841-----26899866
Q 000846 1039 TVALVGQSGCGKSTIIGLLER-----FYDPLKGS 1067 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~r-----l~~p~~G~ 1067 (1255)
|+.++|.+|+|||||++-+.. -|.|+.|.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~ 39 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 39 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 9999998995889999999729998654775343
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=81.12 E-value=0.9 Score=18.14 Aligned_cols=10 Identities=20% Similarity=0.345 Sum_probs=6.1
Q ss_pred CCCCEEEEEC
Q ss_conf 2998789827
Q 000846 500 RDPKILLLDE 509 (1255)
Q Consensus 500 ~~~~ililDe 509 (1255)
.+.+++|+|-
T Consensus 111 ~~~~~vI~DR 120 (333)
T d1p6xa_ 111 QPDLTLVFDR 120 (333)
T ss_dssp CCSEEEEEES
T ss_pred CCCCEEEEEC
T ss_conf 6898699977
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=81.06 E-value=0.54 Score=19.90 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=39.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHHCCEEE
Q ss_conf 9728969999959999788999998412689986-69989950689898887323088
Q 000846 1033 KIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG-SVFMDEQDIRNYNLKQLRSHIAL 1089 (1255)
Q Consensus 1033 ~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G-~I~idG~di~~~~~~~lr~~i~~ 1089 (1255)
-++.|..+-|.|++||||||+...++....-..| -++||... .++.. +.+++|+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~-~a~~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPV-YARALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHH-HHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHH-HHHHHCC
T ss_conf 8667547898058765227999999999970799899998876--58999-9998289
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.05 E-value=0.9 Score=18.12 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999841
Q 000846 1039 TVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
|+.++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=80.85 E-value=0.64 Score=19.32 Aligned_cols=26 Identities=27% Similarity=0.130 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99799998599981899999996166
Q 000846 372 AGKSVGLVGGSGSGKSTTIALLQRFY 397 (1255)
Q Consensus 372 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 397 (1255)
....++|+|..|.|||||++.+....
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~~ 68 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSKS 68 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 84089997799788899999999855
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.69 E-value=0.59 Score=19.62 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999985999818999999961667
Q 000846 374 KSVGLVGGSGSGKSTTIALLQRFYD 398 (1255)
Q Consensus 374 ~~~~ivG~sGsGKSTl~~ll~~~~~ 398 (1255)
+.+++-|.-||||||++++|...+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989988859999999999873
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.69 E-value=0.59 Score=19.62 Aligned_cols=21 Identities=24% Similarity=0.672 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999841
Q 000846 1039 TVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
|+.++|.+|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.54 E-value=0.55 Score=19.87 Aligned_cols=25 Identities=32% Similarity=0.604 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999995999978899999841268
Q 000846 1038 KTVALVGQSGCGKSTIIGLLERFYD 1062 (1255)
Q Consensus 1038 e~vaIVG~SGSGKSTL~~lL~rl~~ 1062 (1255)
..++|-|.-||||||++++|..-+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989988859999999999873
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=80.40 E-value=0.56 Score=19.80 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859998189999999616
Q 000846 375 SVGLVGGSGSGKSTTIALLQRF 396 (1255)
Q Consensus 375 ~~~ivG~sGsGKSTl~~ll~~~ 396 (1255)
.++++|+.++|||||+..|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
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| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=80.35 E-value=0.59 Score=19.58 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=33.1
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE-ECCEECC
Q ss_conf 89728969999959999788999998412689986699-8995068
Q 000846 1032 LKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVF-MDEQDIR 1076 (1255)
Q Consensus 1032 l~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~-idG~di~ 1076 (1255)
-.++++..+-++||.|+|||++++.|+++.. |.+. +++.+.+
T Consensus 149 ~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~r 191 (362)
T d1svma_ 149 YNIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLDR 191 (362)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTTT
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEECCCHH
T ss_conf 2899767699989999888999999999859---978999774201
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.34 E-value=0.66 Score=19.19 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999841
Q 000846 1039 TVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
|+.++|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.21 E-value=0.62 Score=19.42 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999841
Q 000846 1039 TVALVGQSGCGKSTIIGLLER 1059 (1255)
Q Consensus 1039 ~vaIVG~SGSGKSTL~~lL~r 1059 (1255)
|+.++|.+|+|||||++-+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|