Citrus Sinensis ID: 000853
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1252 | 2.2.26 [Sep-21-2011] | |||||||
| Q5W274 | 1447 | Pleiotropic drug resistan | N/A | no | 0.994 | 0.860 | 0.692 | 0.0 | |
| Q9LFH0 | 1450 | ABC transporter G family | yes | no | 0.997 | 0.861 | 0.666 | 0.0 | |
| Q9ZUT8 | 1413 | ABC transporter G family | no | no | 0.996 | 0.882 | 0.650 | 0.0 | |
| Q7PC83 | 1397 | ABC transporter G family | no | no | 0.984 | 0.881 | 0.651 | 0.0 | |
| Q8GZ52 | 1400 | ABC transporter G family | no | no | 0.984 | 0.88 | 0.648 | 0.0 | |
| Q7PC81 | 1390 | ABC transporter G family | no | no | 0.978 | 0.881 | 0.643 | 0.0 | |
| Q7PC82 | 1392 | ABC transporter G family | no | no | 0.978 | 0.880 | 0.638 | 0.0 | |
| Q9XIE2 | 1469 | ABC transporter G family | no | no | 0.999 | 0.851 | 0.573 | 0.0 | |
| Q5Z9S8 | 1500 | Pleiotropic drug resistan | yes | no | 0.999 | 0.834 | 0.552 | 0.0 | |
| Q7FMW4 | 1509 | Pleiotropic drug resistan | yes | no | 0.996 | 0.826 | 0.550 | 0.0 |
| >sp|Q5W274|PDR3_TOBAC Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1861 bits (4821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1255 (69%), Positives = 1041/1255 (82%), Gaps = 10/1255 (0%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG PGCGKT+LL ALSG L SLKVSGE+SYNGY+L+EFVPQKTSAY+SQ DLHI
Sbjct: 200 MTLLLGPPGCGKTSLLKALSGNLDKSLKVSGEISYNGYKLEEFVPQKTSAYVSQNDLHIP 259
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMTVRET+D+S+R QG G RA+ M ++ + EK AG+ PDPD+D YMKAIS+EG +KNLQT
Sbjct: 260 EMTVRETLDYSSRFQGVGSRAEIMTDLSRREKEAGVVPDPDIDTYMKAISIEGQKKNLQT 319
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYILKILGLDICADT+VGD MRRG+SGGQKKRLTTGELIVGP +ALFMDEISNGLDSSTT
Sbjct: 320 DYILKILGLDICADTLVGDAMRRGISGGQKKRLTTGELIVGPIKALFMDEISNGLDSSTT 379
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
+QIV+ L+ L HITDAT L+SLLQPAPETFDLFDD++LMAEGKI+YHGPR+ +FFE C
Sbjct: 380 YQIVACLQQLAHITDATILVSLLQPAPETFDLFDDIILMAEGKILYHGPRNSALEFFESC 439
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GF+CPERKGVADFLQEV S+KDQ QYWH Y +VS+D KFK S KL EEL+
Sbjct: 440 GFKCPERKGVADFLQEVTSKKDQAQYWHGTKETYKFVSVDMLSRKFKESPYRKKLNEELS 499
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
++ S +H+ +++F+ YSL KWEL +AC +REFLLMKRNSFIY+FK+ QL IIASITMT
Sbjct: 500 VPYDNSRSHRNSITFRDYSLPKWELFRACMSREFLLMKRNSFIYIFKTVQLAIIASITMT 559
Query: 361 AFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAY 420
FLR+++ D++HAN YLGALFYAL+IL+V+GFPEL+MT +RLAVFYKQ +LCFYPAWAY
Sbjct: 560 VFLRTRMDTDLVHANYYLGALFYALIILLVDGFPELSMTITRLAVFYKQSELCFYPAWAY 619
Query: 421 AIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480
IPA+ILK+PLSLLES +W S+TYYVIG+SPE GRFFRQ LLLF VH+TSIS+FR +AS+
Sbjct: 620 TIPATILKIPLSLLESVIWASMTYYVIGFSPEAGRFFRQLLLLFAVHMTSISMFRFLASV 679
Query: 481 FRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPR 540
RT+ S G ++IL +L F GFIIP+ SMP WLKWGFW+ PLTYGEIGL VNEFLAPR
Sbjct: 680 CRTIVASTAAGGLSILFVLCFSGFIIPRPSMPIWLKWGFWISPLTYGEIGLAVNEFLAPR 739
Query: 541 WEKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSR 600
W+K NT++G + LESRGLNFD FYWIS+ AL GFT+LFN+ FTLALTFLK+PG SR
Sbjct: 740 WQKTLPTNTSIGNEVLESRGLNFDGYFYWISVCALFGFTILFNIGFTLALTFLKAPG-SR 798
Query: 601 TIIAYEKYSKLQ---DQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDV 657
II+ +KYS+++ D D + ++ K +D+ + G+MVLPFEPL+L F+DV
Sbjct: 799 AIISTDKYSQIEGSSDSIDKADAAENSKATMDS------HERAGRMVLPFEPLSLVFQDV 852
Query: 658 QYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG 717
QYYVDTP+AM + GF QK+LQLLSDITG RPGILTALMGVSGAGKTTL+DVL+GRKT G
Sbjct: 853 QYYVDTPAAMTELGFTQKRLQLLSDITGALRPGILTALMGVSGAGKTTLLDVLAGRKTTG 912
Query: 718 IIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAE 777
+EG+I++GGYPKVQ TFAR+SGYCEQ DIHSP ITVEESVIFSAWLRL P+ID KTK E
Sbjct: 913 YVEGEIKVGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLHPQIDSKTKYE 972
Query: 778 FVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837
FV EV++TIELDGIK LVG+PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT+GLDAR
Sbjct: 973 FVKEVIETIELDGIKGMLVGMPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1032
Query: 838 AAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVI 897
+AAIVMRAVKNV +TGRT+VCTIHQPSIDIFEAFD+LIL+K GGR+IY G LG++SCK+I
Sbjct: 1033 SAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELILLKTGGRMIYWGHLGRNSCKMI 1092
Query: 898 DYFESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSS 957
+YFE I V KIK+N+NPATWMLEV+S+S E ++ +DF ++Y+ S LH+ N+EL K+LS
Sbjct: 1093 EYFEGISCVPKIKNNHNPATWMLEVTSTSSEADISIDFAEVYKNSALHKNNEELVKKLSF 1152
Query: 958 PSPGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQ 1017
P GSKDLHFPT F QNGW QFK C WKQ SYWR+PSYNL R + SL+ G+LFW
Sbjct: 1153 PPAGSKDLHFPTRFSQNGWGQFKTCFWKQYWSYWRSPSYNLMRSLHMLFASLVSGLLFWD 1212
Query: 1018 QGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSF 1077
+GKK+ QQ VF++FGAM++A IF GINN SSV+P V TER+VLYRERFAGMY+ WAY+
Sbjct: 1213 KGKKLDNQQSVFSVFGAMFTAVIFCGINNSSSVLPYVTTERSVLYRERFAGMYASWAYAL 1272
Query: 1078 AQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTP 1137
AQV +E+PYL QA+ + +ITYPMIGYYWSAYK+FW + FC LLYF Y+GM++VS+TP
Sbjct: 1273 AQVAIEIPYLLAQALAFTVITYPMIGYYWSAYKVFWYFYSMFCTLLYFTYLGMMLVSMTP 1332
Query: 1138 NVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKE 1197
+ +A+IL SS Y+M NLF G+ + K QIPKWWIW YYL PTSW LNGML+SQYGDIEKE
Sbjct: 1333 SFPVAAILQSSFYTMFNLFAGFLMPKAQIPKWWIWFYYLTPTSWTLNGMLTSQYGDIEKE 1392
Query: 1198 ISAFGETKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252
I+ F E KTV+ FL DYFGF+H+ L +V VL+ +P+VFASLFA+FIGKLNFQRR
Sbjct: 1393 ITVFQEKKTVAAFLGDYFGFHHNQLPIVAFVLIAYPLVFASLFAFFIGKLNFQRR 1447
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9LFH0|AB37G_ARATH ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1815 bits (4700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 835/1252 (66%), Positives = 1023/1252 (81%), Gaps = 3/1252 (0%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
+TLLLG P CGKTTLL ALSG L ++LK SGE+SYNG+RLDEFVPQKTSAYISQYDLHIA
Sbjct: 202 LTLLLGPPSCGKTTLLKALSGNLENNLKCSGEISYNGHRLDEFVPQKTSAYISQYDLHIA 261
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMTVRET+DFSARCQG G R D M EV K EK GI PD +VDAYMKAISVEGL+++LQT
Sbjct: 262 EMTVRETVDFSARCQGVGSRTDIMMEVSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQT 321
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYILKILGLDICA+ ++GD MRRG+SGGQKKRLTT E+IVGPT+ALFMDEI+NGLDSST
Sbjct: 322 DYILKILGLDICAEILIGDVMRRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTA 381
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQIV L+ HI+ AT L+SLLQPAPE++DLFDD+MLMA+G+IVYHGPR + FFEDC
Sbjct: 382 FQIVKSLQQFAHISSATVLVSLLQPAPESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDC 441
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GFRCPERKGVADFLQEVIS+KDQ QYW +D PY +VS++ KFK +G K+E+ L+
Sbjct: 442 GFRCPERKGVADFLQEVISKKDQAQYWWHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLS 501
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
+++S++HK ALSF YSL WEL AC +RE+LLMKRN F+Y+FK+ QLV+ A ITMT
Sbjct: 502 KPYDRSKSHKDALSFSVYSLPNWELFIACISREYLLMKRNYFVYIFKTAQLVMAAFITMT 561
Query: 361 AFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAY 420
F+R+++ +D++H N+Y+ ALF+AL+IL+V+GFPEL+MTA RLAVFYKQ+ LCFYPAWAY
Sbjct: 562 VFIRTRMGIDIIHGNSYMSALFFALIILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWAY 621
Query: 421 AIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480
AIPA++LKVPLS ES VWT L+YYVIGY+PE RFF+QF+LLF VH TSIS+FR +A++
Sbjct: 622 AIPATVLKVPLSFFESLVWTCLSYYVIGYTPEASRFFKQFILLFAVHFTSISMFRCLAAI 681
Query: 481 FRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPR 540
F+TV S+ G+ IL +F GF+IP SMP+WLKWGFW PL+YGEIGL+VNEFLAPR
Sbjct: 682 FQTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAPR 741
Query: 541 WEKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSR 600
W ++ N T+GR L++RG++++ YW+S+ AL+GFTVLFN++FTLALTFLKSP SR
Sbjct: 742 WNQMQPNNFTLGRTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTFLKSPTSSR 801
Query: 601 TIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYY 660
+I+ +K S+LQ + + S KK D+P+KT + KMVLPF+PLT+TF+D+ Y+
Sbjct: 802 AMISQDKLSELQGTEKSTEDSSVRKKTTDSPVKTE---EEDKMVLPFKPLTVTFQDLNYF 858
Query: 661 VDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE 720
VD P M+ +G++QKKLQLLSDITG FRPGILTALMGVSGAGKTTL+DVL+GRKT G IE
Sbjct: 859 VDMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSGYIE 918
Query: 721 GDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
GDIRI G+PKVQ TFAR+SGYCEQ DIHSPNITVEESVI+SAWLRL+PEID TK +FV
Sbjct: 919 GDIRISGFPKVQETFARVSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDATTKTKFVK 978
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
+VL+TIELD IK SLVG+ GVSGLSTEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAA
Sbjct: 979 QVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 1038
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900
IVMRAVKNV +TGRT+VCTIHQPSIDIFEAFD+L+L+K GGR+IY+GPLGQHS +I+YF
Sbjct: 1039 IVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELVLLKRGGRMIYTGPLGQHSRHIIEYF 1098
Query: 901 ESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSP 960
ES+P + KIKDN+NPATWML+VSS S+E ELGVDF +IY +S L++ N EL KQLS P
Sbjct: 1099 ESVPEIPKIKDNHNPATWMLDVSSQSVEIELGVDFAKIYHDSALYKRNSELVKQLSQPDS 1158
Query: 961 GSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGK 1020
GS D+ F F Q+ W QFK+ LWK NLSYWR+PSYNL R++ T SL++G LFW+QG+
Sbjct: 1159 GSSDIQFKRTFAQSWWGQFKSILWKMNLSYWRSPSYNLMRMMHTLVSSLIFGALFWKQGQ 1218
Query: 1021 KIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQV 1080
+ TQQ +F +FGA+Y +F GINNC+S + TER V+YRERFAGMYS AY+ QV
Sbjct: 1219 NLDTQQSMFTVFGAIYGLVLFLGINNCASALQYFETERNVMYRERFAGMYSATAYALGQV 1278
Query: 1081 LVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQ 1140
+ E+PY+FIQA +VI+TYPMIG+Y SAYK+FWSL+ FC+LL FNY+ M +VS+TPN
Sbjct: 1279 VTEIPYIFIQAAEFVIVTYPMIGFYPSAYKVFWSLYSMFCSLLTFNYLAMFLVSITPNFM 1338
Query: 1141 LASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISA 1200
+A+IL S Y NLF G+ I + Q+P WWIW YYL PTSW LNG +SSQYGDI +EI+
Sbjct: 1339 VAAILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTPTSWTLNGFISSQYGDIHEEINV 1398
Query: 1201 FGETKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252
FG++ TV+ FL DYFGF+HDLL V +V + FPI AS+FA+F+GKLNFQRR
Sbjct: 1399 FGQSTTVARFLKDYFGFHHDLLAVTAVVQIAFPIALASMFAFFVGKLNFQRR 1450
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUT8|AB33G_ARATH ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1770 bits (4585), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 815/1252 (65%), Positives = 1018/1252 (81%), Gaps = 5/1252 (0%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
+TLLLG PGCGKTTLL ALSG L ++LK GE+SYNG+ L+E VPQKTSAYISQ+DLHIA
Sbjct: 167 LTLLLGPPGCGKTTLLKALSGNLENNLKCYGEISYNGHGLNEVVPQKTSAYISQHDLHIA 226
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMT RETIDFSARCQG G R D M EV K EK GI PDP++DAYMKAISV+GL+++LQT
Sbjct: 227 EMTTRETIDFSARCQGVGSRTDIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQT 286
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYILKILGLDICA+T+VG+ M+RG+SGGQKKRLTT E+IVGPT+ALFMDEI+NGLDSST
Sbjct: 287 DYILKILGLDICAETLVGNAMKRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTA 346
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQI+ L+ + HIT+AT +SLLQPAPE++DLFDD++LMAEGKIVYHGPR + KFFE+C
Sbjct: 347 FQIIKSLQQVAHITNATVFVSLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEEC 406
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GF+CPERKGVADFLQEVIS+KDQ QYW ++ P+ +VS+D +FK +G K+EE L+
Sbjct: 407 GFQCPERKGVADFLQEVISKKDQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALS 466
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
++ S+THK ALSF YSL KWEL +AC +REFLLMKRN F+Y+FK+ QLV+ A ITMT
Sbjct: 467 KPYDISKTHKDALSFNVYSLPKWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIITMT 526
Query: 361 AFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAY 420
F+R+++ +D++H N+Y+ LF+A ++L+V+G PEL+MT RL+VFYKQ+ LCFYPAWAY
Sbjct: 527 VFIRTRMDIDIIHGNSYMSCLFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAY 586
Query: 421 AIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480
AIPA++LK+PLS ES VWT LTYYVIGY+PE RFFRQF++LF VH TSIS+FR IA++
Sbjct: 587 AIPATVLKIPLSFFESLVWTCLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAAI 646
Query: 481 FRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPR 540
F+T ++ G+ +L+ +F GF IP MP WLKWGFWV P++Y EIGL+VNEFLAPR
Sbjct: 647 FQTGVAAMTAGSFVMLITFVFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLAPR 706
Query: 541 WEKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSR 600
W+K+ N T+GR LESRGLN+D YW+S++AL+G T++FN +FTLAL+FLKSP SR
Sbjct: 707 WQKMQPTNVTLGRTILESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSR 766
Query: 601 TIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYY 660
+I+ +K S+LQ KD S + K +D+ +KT P GKM+LPF+PLT+TF+D+ YY
Sbjct: 767 PMISQDKLSELQGTKDSSV---KKNKPLDSSIKTNEDP--GKMILPFKPLTITFQDLNYY 821
Query: 661 VDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE 720
VD P MK +G+N+KKLQLLS+ITG FRPG+LTALMG+SGAGKTTL+DVL+GRKT G IE
Sbjct: 822 VDVPVEMKGQGYNEKKLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIE 881
Query: 721 GDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
G+IRI G+ KVQ TFAR+SGYCEQ DIHSP+ITVEES+I+SAWLRL PEI+ +TK FV
Sbjct: 882 GEIRISGFLKVQETFARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFVK 941
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
+VL+TIEL+ IK +LVG+ GVSGLSTEQRKRLT+AVELVANPSIIFMDEPT+GLDARAAA
Sbjct: 942 QVLETIELEEIKDALVGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAA 1001
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900
IVMRAVKNV ETGRT+VCTIHQPSI IFEAFD+L+L+K GGR+IYSGPLGQHS VI+YF
Sbjct: 1002 IVMRAVKNVAETGRTIVCTIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYF 1061
Query: 901 ESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSP 960
++IPGV KI+D YNPATWMLEV+S S+ETEL +DF +IY ES L++ N EL K+LS P
Sbjct: 1062 QNIPGVAKIRDKYNPATWMLEVTSESVETELDMDFAKIYNESDLYKNNSELVKELSKPDH 1121
Query: 961 GSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGK 1020
GS DLHF F QN WEQFK+CLWK +LSYWR+PSYNL RI T S ++G+LFW QGK
Sbjct: 1122 GSSDLHFKRTFAQNWWEQFKSCLWKMSLSYWRSPSYNLMRIGHTFISSFIFGLLFWNQGK 1181
Query: 1021 KIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQV 1080
KI TQQ +F + GA+Y +F GINNC+S + TER V+YRERFAGMYS +AY+ AQV
Sbjct: 1182 KIDTQQNLFTVLGAIYGLVLFVGINNCTSALQYFETERNVMYRERFAGMYSAFAYALAQV 1241
Query: 1081 LVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQ 1140
+ E+PY+FIQ+ +VI+ YPMIG+Y S K+FWSL+ FCNLL FNY+ M ++S+TPN
Sbjct: 1242 VTEIPYIFIQSAEFVIVIYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFM 1301
Query: 1141 LASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISA 1200
+A+IL S ++ N+F G+ I K QIPKWW+W YY+ PTSW LN SSQYGDI ++I+A
Sbjct: 1302 VAAILQSLFFTTFNIFAGFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKINA 1361
Query: 1201 FGETKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252
FGETKTV+ FL+DYFGF+HD L + I+L+ FPI A+++A+F+ KLNFQ+R
Sbjct: 1362 FGETKTVASFLEDYFGFHHDRLMITAIILIAFPIALATMYAFFVAKLNFQKR 1413
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC83|AB41G_ARATH ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1721 bits (4458), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 816/1252 (65%), Positives = 998/1252 (79%), Gaps = 20/1252 (1%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG PGCGKTTLL ALSG+LSHS+KV G+VSYNG L EF+P+KTS+YISQ DLHI
Sbjct: 166 MTLLLGPPGCGKTTLLQALSGRLSHSVKVGGKVSYNGCLLSEFIPEKTSSYISQNDLHIP 225
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
E++VRET+DFSA CQG G R + MKE+ + EKL I PDPD+DAYMKAISVEGL+ ++QT
Sbjct: 226 ELSVRETLDFSACCQGIGSRMEIMKEISRREKLKEIVPDPDIDAYMKAISVEGLKNSMQT 285
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYILKILGLDICADT GD R G+SGGQK+RLTTGE++VGP L MDEISNGLDSSTT
Sbjct: 286 DYILKILGLDICADTRAGDATRPGISGGQKRRLTTGEIVVGPATTLLMDEISNGLDSSTT 345
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQIVS L+ L HI AT LISLLQPAPETF+LFDDV+L+ EGKI+YH PR+ ICKFFE C
Sbjct: 346 FQIVSCLQQLAHIAGATILISLLQPAPETFELFDDVILLGEGKIIYHAPRADICKFFEGC 405
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GF+CPERKGVADFLQEV+SRKDQEQYW + PY Y+S+D FI KF S+LG L+EEL+
Sbjct: 406 GFKCPERKGVADFLQEVMSRKDQEQYWCHRSKPYSYISVDSFIKKFNESNLGFLLKEELS 465
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
F+KS+T K +L F+KYSL+KWE+LKAC+ RE LLMKRNSFIY+FKS LV A +TMT
Sbjct: 466 KPFDKSQTRKDSLCFRKYSLSKWEMLKACSRREILLMKRNSFIYLFKSGLLVFNALVTMT 525
Query: 361 AFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAY 420
FL++ D H N +G++F AL L+ +G PEL +T SRL VF KQ+DL FYPAWAY
Sbjct: 526 VFLQAGATRDARHGNYLMGSMFTALFRLLADGLPELTLTISRLGVFCKQKDLYFYPAWAY 585
Query: 421 AIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480
AIP+ IL++PLS+L+SF+WT LTYYVIGYSPEVGRFFR F++L T HL+ IS+FRAIAS+
Sbjct: 586 AIPSIILRIPLSVLDSFIWTVLTYYVIGYSPEVGRFFRHFIILLTFHLSCISMFRAIASI 645
Query: 481 FRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPR 540
RT + G +++L+L LFGGF+IPK SMP+WL WGFW+ PL+Y EIGLT NEF +PR
Sbjct: 646 CRTFVACSITGAISVLLLALFGGFVIPKSSMPTWLGWGFWLSPLSYAEIGLTANEFFSPR 705
Query: 541 WEKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSR 600
W K+TSGN T G Q L+ RGLNF YW + AL+GF + FN ++TLALT+ +P +SR
Sbjct: 706 WRKLTSGNITAGEQVLDVRGLNFGRHSYWTAFGALVGFVLFFNALYTLALTYRNNPQRSR 765
Query: 601 TIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYY 660
I+++ K S+ S+ D K + T+ K GK++LPF+PLT+TF++VQYY
Sbjct: 766 AIVSHGKNSQC---------SEEDFKPCP---EITSRAKTGKVILPFKPLTVTFQNVQYY 813
Query: 661 VDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE 720
++TP K QLL DITG +PG+LT+LMGVSGAGKTTL+DVLSGRKT GII+
Sbjct: 814 IETPQG--------KTRQLLFDITGALKPGVLTSLMGVSGAGKTTLLDVLSGRKTRGIIK 865
Query: 721 GDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
G+IR+GGYPKVQ TFAR+SGYCEQ DIHSPNITVEES+ +SAWLRL ID KTK E V
Sbjct: 866 GEIRVGGYPKVQETFARVSGYCEQFDIHSPNITVEESLKYSAWLRLPYNIDAKTKNELVK 925
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
EVL+T+EL+ IK S+VGLPG+SGLSTEQRKRLTIAVELV+NPSIIF+DEPT+GLDARAAA
Sbjct: 926 EVLETVELEDIKDSMVGLPGISGLSTEQRKRLTIAVELVSNPSIIFLDEPTTGLDARAAA 985
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900
IVMRAVKNV ETGRTVVCTIHQPSIDIFE FD+LILMK+GG+++Y GPLG+HS KVI YF
Sbjct: 986 IVMRAVKNVAETGRTVVCTIHQPSIDIFETFDELILMKDGGQLVYYGPLGKHSSKVIKYF 1045
Query: 901 ESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSP 960
ESIPGV K++ N NPATWML+++ S E LG+DF Q Y++STL++ENK + +QLSS S
Sbjct: 1046 ESIPGVPKVQKNCNPATWMLDITCKSAEHRLGMDFAQAYKDSTLYKENKMVVEQLSSASL 1105
Query: 961 GSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGK 1020
GS+ L FP+ + Q GW Q KACLWKQ+ SYWRNPS+NL RIVF SLL +LFWQ+ K
Sbjct: 1106 GSEALSFPSRYSQTGWGQLKACLWKQHCSYWRNPSHNLTRIVFILLNSLLCSLLFWQKAK 1165
Query: 1021 KIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQV 1080
I QQ++F++FG+MY+ IF GINNC++V+ +ATER V YRERFA MYS WAYSF+QV
Sbjct: 1166 DINNQQDLFSIFGSMYTIVIFSGINNCATVMNFIATERNVFYRERFARMYSSWAYSFSQV 1225
Query: 1081 LVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQ 1140
LVEVPY +Q+++ II YPMIGY+ S YK+FWSL+ FC+LL FNY GMLMV+LTPN+
Sbjct: 1226 LVEVPYSLLQSLLCTIIVYPMIGYHMSVYKMFWSLYSIFCSLLIFNYCGMLMVALTPNIH 1285
Query: 1141 LASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISA 1200
+A L S+ +SM+NLF G+ + K++IPKWWIW YYL PTSWVL G+LSSQYGD+EKEI+
Sbjct: 1286 MALTLRSTFFSMVNLFAGFVMPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVEKEITV 1345
Query: 1201 FGETKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252
FGE K+VS FL+DYFG+ HD L VV VL+ FPI+ ASLFA+F+ KLNFQ++
Sbjct: 1346 FGEKKSVSAFLEDYFGYKHDSLAVVAFVLIAFPIIVASLFAFFMSKLNFQKK 1397
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GZ52|AB30G_ARATH ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1714 bits (4438), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 812/1252 (64%), Positives = 994/1252 (79%), Gaps = 20/1252 (1%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG PGCGKTTLL ALSGK S S+KV GEV YNG L EF+P+KTS+YISQ DLHI
Sbjct: 169 MTLLLGPPGCGKTTLLQALSGKFSDSVKVGGEVCYNGCSLSEFIPEKTSSYISQNDLHIP 228
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
E++VRET+DFSA CQG G R + MKE+ ++EKL I PDP VDAYMKA SVEGL+ NLQT
Sbjct: 229 ELSVRETLDFSACCQGIGSRMEIMKEISRMEKLQEIIPDPAVDAYMKATSVEGLKNNLQT 288
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYILKILGLDICADT VGD R G+SGG+K+RLTTGEL+VGP LFMDEISNGLDSSTT
Sbjct: 289 DYILKILGLDICADTRVGDATRPGISGGEKRRLTTGELVVGPATTLFMDEISNGLDSSTT 348
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQIVS L+ L HI +AT LISLLQPAPETF+LFDDV+LM EGKI+YH PR+ IC+FFE+
Sbjct: 349 FQIVSCLQQLAHIAEATILISLLQPAPETFELFDDVILMGEGKIIYHAPRADICRFFEEF 408
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GF+CPERKGVADFLQE++S+KDQEQYW +D PY Y+S+D FI KFK S+LGL L+EEL+
Sbjct: 409 GFKCPERKGVADFLQEIMSKKDQEQYWCHRDKPYSYISVDSFINKFKESNLGLLLKEELS 468
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
FNKS+T K L +KKYSL KWE+LKAC+ REFLLMKRNSFIY+FKS LV A +TMT
Sbjct: 469 KPFNKSQTRKDGLCYKKYSLGKWEMLKACSRREFLLMKRNSFIYLFKSALLVFNALVTMT 528
Query: 361 AFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAY 420
FL+ D LH N +G+LF AL L+ +G PEL +T SRL VF KQ+DL FYPAWAY
Sbjct: 529 VFLQVGATTDSLHGNYLMGSLFTALFRLLADGLPELTLTISRLGVFCKQKDLYFYPAWAY 588
Query: 421 AIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480
AIP+ ILK+PLS+L+SF+WT LTYYVIGYSPEV RFF QFL+L T +L+ +S+FRAIA++
Sbjct: 589 AIPSIILKIPLSVLDSFIWTLLTYYVIGYSPEVKRFFLQFLILSTFNLSCVSMFRAIAAI 648
Query: 481 FRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPR 540
FRT+ S + G ++IL+L LFGGF+IPK SMP+WL WGFW+ PL+Y EIGLT NEF +PR
Sbjct: 649 FRTIIASTITGAISILVLSLFGGFVIPKSSMPAWLGWGFWLSPLSYAEIGLTANEFFSPR 708
Query: 541 WEKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSR 600
W K+ S TT G Q L+ RGLNF YW + AL+GF + FN ++ LALT+ +P +SR
Sbjct: 709 WSKVISSKTTAGEQMLDIRGLNFGRHSYWTAFGALVGFVLFFNALYVLALTYQNNPQRSR 768
Query: 601 TIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYY 660
II++EKYS+ ++ D K K T+ K GK++LPF+PLT+TF++VQYY
Sbjct: 769 AIISHEKYSRPIEE---------DFKPCP---KITSRAKTGKIILPFKPLTVTFQNVQYY 816
Query: 661 VDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE 720
++TP K QLLSDITG +PG+LT+LMGVSGAGKTTL+DVLSGRKT GII+
Sbjct: 817 IETPQG--------KTRQLLSDITGALKPGVLTSLMGVSGAGKTTLLDVLSGRKTRGIIK 868
Query: 721 GDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
G+I++GGYPKVQ TFAR+SGYCEQ DIHSPNITVEES+ +SAWLRL ID KTK E V
Sbjct: 869 GEIKVGGYPKVQETFARVSGYCEQFDIHSPNITVEESLKYSAWLRLPYNIDSKTKNELVK 928
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
EVL+T+ELD IK S+VGLPG+SGLS EQRKRLTIAVELVANPSIIFMDEPT+GLDARAAA
Sbjct: 929 EVLETVELDDIKDSVVGLPGISGLSIEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 988
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900
IVMRAVKNV ETGRTVVCTIHQPSIDIFE FD+LILMKNGG+++Y GP GQ+S KVI+YF
Sbjct: 989 IVMRAVKNVAETGRTVVCTIHQPSIDIFETFDELILMKNGGQLVYYGPPGQNSSKVIEYF 1048
Query: 901 ESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSP 960
ES G+ KI+ N NPATW+L+++S S E +LG+DF Q Y++STL+++NK + +QLSS S
Sbjct: 1049 ESFSGLPKIQKNCNPATWILDITSKSAEEKLGIDFSQSYKDSTLYKQNKMVVEQLSSASL 1108
Query: 961 GSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGK 1020
GS+ L FP+ F Q W Q KACLWKQ+ SYWRNPS+N+ RIVF S L G+LFWQ+ +
Sbjct: 1109 GSEALRFPSQFSQTAWVQLKACLWKQHYSYWRNPSHNITRIVFILLDSTLCGLLFWQKAE 1168
Query: 1021 KIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQV 1080
I QQ++ ++FG+MY+ +F G+NNC++V+ +A ER V YRERFA MYS WAYSF+QV
Sbjct: 1169 DINNQQDLISIFGSMYTLVVFPGMNNCAAVINFIAAERNVFYRERFARMYSSWAYSFSQV 1228
Query: 1081 LVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQ 1140
L+EVPY +Q+++ II YP IGY+ S YK+FWSL+ FC+LL FNY GMLMV+LTPN+
Sbjct: 1229 LIEVPYSLLQSLLCTIIVYPTIGYHMSVYKMFWSLYSIFCSLLIFNYSGMLMVALTPNIH 1288
Query: 1141 LASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISA 1200
+A L SS +SMLNLF G+ I K++IPKWWIW YYL PTSWVL G+LSSQYGD++KEI
Sbjct: 1289 MAVTLRSSFFSMLNLFAGFVIPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVDKEILV 1348
Query: 1201 FGETKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252
FGE K VS FL+DYFG+ H+ L VV VL+ +PI+ A+LFA+F+ KL+FQ++
Sbjct: 1349 FGEKKRVSAFLEDYFGYKHESLAVVAFVLIAYPIIVATLFAFFMSKLSFQKK 1400
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC81|AB43G_ARATH ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1711 bits (4430), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 806/1252 (64%), Positives = 993/1252 (79%), Gaps = 27/1252 (2%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG PGCGKTTLL ALSG+L SLK GEVSYNG+ EFVP+KTS+Y+SQ DLHI
Sbjct: 166 MTLLLGPPGCGKTTLLLALSGRLDPSLKTRGEVSYNGHLFSEFVPEKTSSYVSQNDLHIP 225
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
E++VRET+DFS QG G R + MKE+ + EKL GI PDPD+DAYMKA S+EG + NLQT
Sbjct: 226 ELSVRETLDFSGCFQGAGSRLEMMKEISRREKLKGIVPDPDIDAYMKAASIEGSKTNLQT 285
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYILKILGL ICADT VGD R G+SGGQK+RLTTGE+IVGP + LFMDEISNGLDSSTT
Sbjct: 286 DYILKILGLTICADTRVGDASRPGISGGQKRRLTTGEMIVGPIKTLFMDEISNGLDSSTT 345
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQI+S L+ +++ T L+SLLQPAPETF+LFDD++LM EGKI+YHGPR +IC FFEDC
Sbjct: 346 FQILSCLQQFARLSEGTILVSLLQPAPETFELFDDLILMGEGKIIYHGPRDFICSFFEDC 405
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GF+CP+RK VA+FLQEVISRKDQEQYW +D PY YVSID FI KFK S LGL+L++EL+
Sbjct: 406 GFKCPQRKSVAEFLQEVISRKDQEQYWCHRDKPYCYVSIDSFIEKFKKSDLGLQLQDELS 465
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
+++KS+T K L +KYSL+ W++ KAC+ REFLLMKRNSF+YVFKS L+ I SI MT
Sbjct: 466 KTYDKSQTQKDGLCIRKYSLSNWDMFKACSRREFLLMKRNSFVYVFKSGLLIFIGSIAMT 525
Query: 361 AFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAY 420
+LR+ D LHAN +G+LF++L+ L+ +G PEL +T SR+AVF KQ++L FYPAWAY
Sbjct: 526 VYLRTGSTRDSLHANYLMGSLFFSLIKLLADGLPELTLTVSRIAVFCKQKELYFYPAWAY 585
Query: 421 AIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480
AIP++ILK+P+S LESF+WT LTYYVIGYSPE GRF RQ L+LF +HL+ IS+FRAI ++
Sbjct: 586 AIPSAILKIPISFLESFLWTMLTYYVIGYSPEAGRFIRQVLILFALHLSCISMFRAIGAV 645
Query: 481 FRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPR 540
FR V+ IG+++I++L +FGGFI+ K SMPSWL+WGFW+ PL+Y EIGLT NEF AP
Sbjct: 646 FRDFDVATTIGSISIVLLSVFGGFIVRKPSMPSWLEWGFWLSPLSYAEIGLTSNEFFAPM 705
Query: 541 WEKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSR 600
W K+TS N T+G Q L++RGLNF + YW + ALIGFT+ FN VF LALTFLK+ +SR
Sbjct: 706 WRKMTSENRTLGEQVLDARGLNFGNQSYWNAFGALIGFTLFFNTVFALALTFLKTSQRSR 765
Query: 601 TIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYY 660
I++++K + S++D K K LPFEPLT TF+DVQY+
Sbjct: 766 VIVSHDK---------NTQSSEKDSKI----------ASHSKNALPFEPLTFTFQDVQYF 806
Query: 661 VDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE 720
++TP KKLQLLSD+TG F+PG+LTALMGVSGAGKTTL+DVLSGRKT G I+
Sbjct: 807 IETPQG--------KKLQLLSDVTGAFKPGVLTALMGVSGAGKTTLLDVLSGRKTRGDIK 858
Query: 721 GDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
G I +GGY KVQ TF+R+SGYCEQ DIHSPN+TV+ES+ +SAWLRL I +TK+ VN
Sbjct: 859 GQIEVGGYVKVQDTFSRVSGYCEQFDIHSPNLTVQESLKYSAWLRLPCNISSETKSAIVN 918
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
EVL+TIEL+ IK SLVG+PG+SG++ EQRKRLTIAVELV+NPSIIFMDEPT+GLDARAAA
Sbjct: 919 EVLETIELEEIKDSLVGVPGISGVTAEQRKRLTIAVELVSNPSIIFMDEPTTGLDARAAA 978
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900
IVMRAVKN+ ETGRTVVCTIHQPSIDIFEAFD+LILMKNGG+IIY GPLGQHS KVI+YF
Sbjct: 979 IVMRAVKNIAETGRTVVCTIHQPSIDIFEAFDELILMKNGGKIIYYGPLGQHSSKVIEYF 1038
Query: 901 ESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSP 960
SIPGV K+K+N NPATW+L+++S S E +LGVD IY ESTL +ENK + +Q S
Sbjct: 1039 MSIPGVPKLKENSNPATWILDITSKSSEDKLGVDLAHIYEESTLFKENKMVIEQTRCTSL 1098
Query: 961 GSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGK 1020
GS+ L + + Q WEQFKACLWKQ+LSYWRNPSYNL RI+F C +L GILF Q+ K
Sbjct: 1099 GSERLILSSRYAQTSWEQFKACLWKQHLSYWRNPSYNLTRIIFMCFTCMLCGILFLQKAK 1158
Query: 1021 KIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQV 1080
+I QQ++FN+FG+M++ +F GINNCS+V+ VATER V YRERF+ MY+PWAYS AQV
Sbjct: 1159 EINNQQDLFNVFGSMFTVVLFSGINNCSTVIFCVATERNVFYRERFSRMYNPWAYSLAQV 1218
Query: 1081 LVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQ 1140
LVE+PY Q++IYVII YPM+GY+WS YK+FWS + FC+LL FNY GML+V +TPNV
Sbjct: 1219 LVEIPYSLFQSIIYVIIVYPMVGYHWSVYKVFWSFYSIFCSLLIFNYFGMLLVVVTPNVH 1278
Query: 1141 LASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISA 1200
+A L SS Y+++NLF GY + K IP+WWIW YYL PTSWVLNG+L+SQYGD+EKEI A
Sbjct: 1279 IAFTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDMEKEILA 1338
Query: 1201 FGETKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252
FGE K VS FL+DYFG+ +D L +V +VL+ FPI+ ASLFA+FIGKLNFQ++
Sbjct: 1339 FGEKKKVSAFLEDYFGYRYDSLALVAVVLIAFPILLASLFAFFIGKLNFQKK 1390
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC82|AB42G_ARATH ABC transporter G family member 42 OS=Arabidopsis thaliana GN=ABCG42 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1692 bits (4381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 799/1252 (63%), Positives = 988/1252 (78%), Gaps = 27/1252 (2%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG P CGKTTLL ALSG+L SLK G++SYNG+ EFVP+KTS+Y+SQ DLHI
Sbjct: 168 MTLLLGPPSCGKTTLLLALSGRLDPSLKTRGDISYNGHLFSEFVPEKTSSYVSQNDLHIP 227
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
E++VRET+DFS QGTG R + KE+ + EKL GI PDPD+DAYMKA S+EG + NLQT
Sbjct: 228 ELSVRETLDFSGCFQGTGSRLEMTKEISRREKLKGIVPDPDIDAYMKAASIEGSKTNLQT 287
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYILKILGL ICADT VGD R G+SGGQK+RLTTGE+IVGP + LFMDEISNGLDSSTT
Sbjct: 288 DYILKILGLTICADTRVGDASRPGISGGQKRRLTTGEMIVGPIKTLFMDEISNGLDSSTT 347
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQI+S L+ +++ T L+SLLQPAPETF+LFDD++LM EGKI+YHGPR ++C FFEDC
Sbjct: 348 FQILSCLQQFARLSEGTILVSLLQPAPETFELFDDLILMGEGKIIYHGPRDFVCSFFEDC 407
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GF+CP RK VA+FLQEVISRKDQEQYW + Y YVSI+ FI KFK S LGL+L++ L+
Sbjct: 408 GFKCPNRKSVAEFLQEVISRKDQEQYWCHIEKTYCYVSIESFIEKFKKSDLGLELQDRLS 467
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
+++KS+T K L F+KYSL+ W++LKAC+ REFLLMKRNSF+YVFKS L+ I I MT
Sbjct: 468 KTYDKSQTQKDGLCFRKYSLSNWDMLKACSRREFLLMKRNSFVYVFKSGLLIFIGFIAMT 527
Query: 361 AFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAY 420
+LR+ D LHAN +G+LF++L L+ +G PEL +T SR+AVF KQ++L FYPAWAY
Sbjct: 528 VYLRTGSTRDSLHANYLMGSLFFSLFKLLADGLPELTLTISRIAVFCKQKELYFYPAWAY 587
Query: 421 AIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480
AIP++ILK+P+S LESF+WT LTYYVIGYSPE+GRF RQFL+LF +HL+ IS+FRAIA++
Sbjct: 588 AIPSAILKIPISFLESFLWTMLTYYVIGYSPEMGRFIRQFLILFALHLSCISMFRAIAAV 647
Query: 481 FRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPR 540
FR V+ +G+++I++L +FGGFI+ K SMPSWL+WGFW+ PL+Y EIGLT NEF APR
Sbjct: 648 FRDFVVATTVGSISIVLLSVFGGFIVRKPSMPSWLEWGFWLSPLSYAEIGLTANEFFAPR 707
Query: 541 WEKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSR 600
W KITS N T+G Q L++RGLNF + YW + ALIGFT+ FN VF LALTFLK+ +SR
Sbjct: 708 WGKITSENRTLGEQVLDARGLNFGNQSYWNAFGALIGFTLFFNTVFALALTFLKTSQRSR 767
Query: 601 TIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYY 660
I+++EK + S+ D K R K LPFEPLT TF+DVQY
Sbjct: 768 VIVSHEK---------NTQSSENDSKI----------ASRFKNALPFEPLTFTFQDVQYI 808
Query: 661 VDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE 720
++TP KKLQLLS +TG F+PG+LTALMGVSGAGKTTL+DVLSGRKT G I+
Sbjct: 809 IETPQG--------KKLQLLSGVTGAFKPGVLTALMGVSGAGKTTLLDVLSGRKTFGDIK 860
Query: 721 GDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
G I +GGY KVQ TF+R+SGYCEQ DIHSPN+TV+ES+ +SAWLRL+ I +TK VN
Sbjct: 861 GQIEVGGYVKVQDTFSRVSGYCEQFDIHSPNLTVQESLKYSAWLRLTSNISSETKCAIVN 920
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
EVL+TIEL+ IK S+VG+PG+SGL+TEQRKRLTIAVELV+NPSIIFMDEPT+GLDARAAA
Sbjct: 921 EVLETIELEEIKDSIVGIPGISGLTTEQRKRLTIAVELVSNPSIIFMDEPTTGLDARAAA 980
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900
IVMRAVKN+ ETGRTVVCTIHQPSIDIFEAFD+LILMKNGG+IIY GPLGQHS KVI+YF
Sbjct: 981 IVMRAVKNIAETGRTVVCTIHQPSIDIFEAFDELILMKNGGKIIYYGPLGQHSSKVIEYF 1040
Query: 901 ESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSP 960
I GV K+K+N NPATW+L+++S S E +LGVD Q+Y ESTL +ENK + +Q S
Sbjct: 1041 MRIHGVPKLKENSNPATWILDITSKSSEDKLGVDLAQMYEESTLFKENKMVIEQTRCTSL 1100
Query: 961 GSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGK 1020
GS+ L + + Q WEQFKACLWKQ+LSYWRNPSYNL RI+F +L GILFWQ+ K
Sbjct: 1101 GSERLILSSRYAQTSWEQFKACLWKQHLSYWRNPSYNLTRIIFMSFTCMLCGILFWQKAK 1160
Query: 1021 KIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQV 1080
+I QQ++FN+FG+M++ +F GINNCS+V+ VATER V YRERF+ MY+ WAYS AQV
Sbjct: 1161 EINNQQDLFNVFGSMFTVVLFSGINNCSTVLFSVATERNVFYRERFSRMYNSWAYSLAQV 1220
Query: 1081 LVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQ 1140
LVE+PY Q+++YVII YPM+GY+WS +K+FWS + FC LL FNY GML+V +TPNV
Sbjct: 1221 LVEIPYSLFQSIVYVIIVYPMVGYHWSVFKVFWSFYSIFCTLLIFNYFGMLLVVVTPNVH 1280
Query: 1141 LASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISA 1200
+A L SS Y+++NLF GY + K IP+WWIW YYL PTSWVLNG+L+SQYGD+EKEI A
Sbjct: 1281 IAFTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDMEKEILA 1340
Query: 1201 FGETKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252
FGE K VS FL+DYFG+ +D L +V +VL+ FPI+ ASLFA+FIGKLNFQ++
Sbjct: 1341 FGEKKKVSDFLEDYFGYRYDSLALVAVVLIAFPILLASLFAFFIGKLNFQKK 1392
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIE2|AB36G_ARATH ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1488 bits (3853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 730/1272 (57%), Positives = 936/1272 (73%), Gaps = 21/1272 (1%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG P GKTTLL AL+GKL SL+VSG+++YNGY+LDEFVP+KTSAYISQ DLH+
Sbjct: 199 MTLLLGPPSSGKTTLLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVG 258
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
MTV+ET+DFSARCQG G R D + E+ + EK AGIFP+ DVD +MKA + +G++ +L T
Sbjct: 259 IMTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVT 318
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DY LKILGLDIC DTIVGD M RG+SGGQKKR+TTGE+IVGPT+ LFMDEIS GLDSSTT
Sbjct: 319 DYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 378
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQIV L+ +VH+ +AT L+SLLQPAPETFDLFDD++L++EG+IVY GPR I +FFE
Sbjct: 379 FQIVKCLQQIVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESF 438
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GF+CPERKG ADFLQEV S+KDQEQYW + PY Y+ + +F +++K+ H+G K+ ELA
Sbjct: 439 GFKCPERKGTADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELA 498
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
F+KS HK AL F KYS++K ELLK+C +E+LLM+RN+F YVFK+ Q+VIIA+IT T
Sbjct: 499 VPFDKSRGHKAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITST 558
Query: 361 AFLRSQLAV-DVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWA 419
FLR+++ + AN Y+GAL + ++I + NGF E+ M SRL VFYKQRDL FYP+W
Sbjct: 559 LFLRTEMNTRNEGDANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWT 618
Query: 420 YAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIAS 479
+++P +L +P S+LES W +TYY IG++P+ RFF+QFLL+F + + SLFR IAS
Sbjct: 619 FSLPTFLLGIPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIAS 678
Query: 480 LFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAP 539
+ RT+ ++ G + +L++ L GGF++PK +P W W +WV PLTY GL VNE AP
Sbjct: 679 VCRTMMIANTGGALTLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAP 738
Query: 540 RW-EKITSGNTTV--GRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSP 596
RW K+ S N+T+ G L + + ++YWIS+ AL+ FT LFN++FTLALT+L
Sbjct: 739 RWMNKMASSNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPL 798
Query: 597 GKSRTIIAYEKYSKLQDQKD--------------GSSGSDRDKKHIDAPLKTTAGPKRGK 642
GK ++ E+ KD G R + A AG K+G
Sbjct: 799 GKKAGLLPEEENEDADQGKDPMRRSLSTADGNRRGEVAMGRMSRDSAAEASGGAGNKKG- 857
Query: 643 MVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAG 702
MVLPF PL ++F+DV+Y+VD P M+ +G + +LQLL +TG FRPG+LTALMGVSGAG
Sbjct: 858 MVLPFTPLAMSFDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAG 917
Query: 703 KTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSA 762
KTTLMDVL+GRKTGG IEGD+RI G+PKVQ TFARISGYCEQ DIHSP +TV ES+IFSA
Sbjct: 918 KTTLMDVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSA 977
Query: 763 WLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANP 822
+LRL E+ K FV++V++ +ELD ++ S+VGLPGV+GLSTEQRKRLTIAVELVANP
Sbjct: 978 FLRLPKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANP 1037
Query: 823 SIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882
SIIFMDEPTSGLDARAAAIVMRAV+N V+TGRTVVCTIHQPSIDIFEAFD+L+LMK GG+
Sbjct: 1038 SIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQ 1097
Query: 883 IIYSGPLGQHSCKVIDYFESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRES 942
+IY+GPLGQ+S KV++YFES PGV KI + YNPATWMLE SS + E +L VDF ++Y +S
Sbjct: 1098 VIYAGPLGQNSHKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQS 1157
Query: 943 TLHQENKELGKQLSSPSPGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIV 1002
LHQ NK L K+LS P G+ DL+F T F QN W QFK+CLWKQ +YWR+P YNL R +
Sbjct: 1158 ALHQRNKALVKELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFI 1217
Query: 1003 FTCAMSLLYGILFWQQGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLY 1062
FT A SLL G +FWQ G ++ + GA+Y+A IF GINNCS+V P+VA ERTV Y
Sbjct: 1218 FTLATSLLIGTVFWQIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFY 1277
Query: 1063 RERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNL 1122
RER AGMYS Y+ +QV E+PY+ IQ V Y +I Y M+G+ W A K FW + ++ +
Sbjct: 1278 RERAAGMYSAMPYAISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSF 1337
Query: 1123 LYFNYMGMLMVSLTPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWV 1182
LY+ Y GM+ VSLTPN Q+ASI AS+ Y + NLF G+ I + +IPKWWIW Y++CP +W
Sbjct: 1338 LYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWT 1397
Query: 1183 LNGMLSSQYGDIEKEISAFGETK--TVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLF 1240
+ G++ SQYGD+E I G TV +++D++GF D +G V VL+ F + FA +F
Sbjct: 1398 VYGLIVSQYGDVETRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIF 1457
Query: 1241 AYFIGKLNFQRR 1252
A+ I LNFQ R
Sbjct: 1458 AFCIRTLNFQTR 1469
|
Key factor that controls the extent of cell death in the defense response. Neccessary for both callose deposition and glucosinolate activation in response to pathogens. Required for limiting invasion by nonadapted powdery mildews. Confers resistance to cadmium (Cd) and lead (Pb), probably as an efflux pump of Cd2+ or Cd conjugates, and possibly, of chemicals that mediate pathogen resistance. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5Z9S8|PDR12_ORYSJ Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1487 bits (3850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 714/1292 (55%), Positives = 947/1292 (73%), Gaps = 41/1292 (3%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG P GKTTLL AL+GKL SL+ GEV+YNG+ L+EFV QKT+AYISQ D+H+
Sbjct: 210 MTLLLGPPSSGKTTLLLALAGKLDPSLRRGGEVTYNGFELEEFVAQKTAAYISQTDVHVG 269
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMTV+ET+DFSARCQG G + D + E+ + EK AGI P+P+VD +MKA S+EG+E +LQT
Sbjct: 270 EMTVKETLDFSARCQGVGTKYDLLTELARREKEAGIRPEPEVDLFMKATSMEGVESSLQT 329
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DY L+ILGLDICADTIVGD M+RG+SGGQKKR+TTGE+IVGPT+ LFMDEIS GLDSSTT
Sbjct: 330 DYTLRILGLDICADTIVGDQMQRGISGGQKKRVTTGEMIVGPTKVLFMDEISTGLDSSTT 389
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQIV L+ +VH+ +AT L+SLLQPAPETF+LFDD++L++EG+IVY GPR Y+ +FFE C
Sbjct: 390 FQIVKCLQQIVHLGEATILMSLLQPAPETFELFDDIILLSEGQIVYQGPREYVLEFFESC 449
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GFRCPERKG ADFLQEV S+KDQEQYW K PY Y+S+ +F +FK H+GL+LE L+
Sbjct: 450 GFRCPERKGTADFLQEVTSKKDQEQYWADKHRPYRYISVSEFAQRFKRFHVGLQLENHLS 509
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
F+K+ +H+ AL F K S++ ELLKA +E+LL+KRNSF+Y+FK+ QL+I+A + T
Sbjct: 510 VPFDKTRSHQAALVFSKQSVSTTELLKASFAKEWLLIKRNSFVYIFKTIQLIIVALVAST 569
Query: 361 AFLRSQLAVDVLHAN-AYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWA 419
FLR+Q+ L Y+GAL ++L++ + NGF EL++T +RL VF+K RDL FYPAW
Sbjct: 570 VFLRTQMHTRNLDDGFVYIGALLFSLIVNMFNGFAELSLTITRLPVFFKHRDLLFYPAWI 629
Query: 420 YAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIAS 479
+ +P IL++P S++ES VW +TYY IG++PE RFF+Q LL+F + + LFRA A
Sbjct: 630 FTLPNVILRIPFSIIESIVWVIVTYYTIGFAPEADRFFKQLLLVFLIQQMAGGLFRATAG 689
Query: 480 LFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAP 539
L R++ ++ G +A+L+ + GGF++PK +P W WG+WV PL YG L VNEF +P
Sbjct: 690 LCRSMIIAQTGGALALLIFFVLGGFLLPKAFIPKWWIWGYWVSPLMYGYNALAVNEFYSP 749
Query: 540 RW-EKITSGNTTV----GRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLK 594
RW K N V G +E + D +++WI A L+GFT+ FNV+FTL+L +L
Sbjct: 750 RWMNKFVLDNNGVPKRLGIALMEGANIFTDKNWFWIGAAGLLGFTMFFNVLFTLSLVYLN 809
Query: 595 SPGKSRTIIAYEKYSKLQDQKD-------------GSSGSDRDKKHIDAPLKTT------ 635
GK + +I+ E + + D G + + + + A L +
Sbjct: 810 PLGKPQAVISEETAKEAEGNGDARHTVRNGSTKSNGGNHKEMREMRLSARLSNSSSNGVS 869
Query: 636 ---------AGPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGT 686
AGP+RG MVLPF PL+++F+DV YYVD P+ MK++G +LQLL D+TG+
Sbjct: 870 RLMSIGSNEAGPRRG-MVLPFTPLSMSFDDVNYYVDMPAEMKQQGVVDDRLQLLRDVTGS 928
Query: 687 FRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQND 746
FRP +LTALMGVSGAGKTTLMDVL+GRKTGG IEGD+RI GYPK Q TFARISGYCEQND
Sbjct: 929 FRPAVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDMRISGYPKNQETFARISGYCEQND 988
Query: 747 IHSPNITVEESVIFSAWLRL-----SPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801
IHSP +TV ES+I+SA+LRL EI K +FV+EV++ +ELD +K +LVGLPG+
Sbjct: 989 IHSPQVTVRESLIYSAFLRLPEKIGDQEITDDIKIQFVDEVMELVELDNLKDALVGLPGI 1048
Query: 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIH 861
+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR V+N V+TGRTVVCTIH
Sbjct: 1049 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1108
Query: 862 QPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFESIPGVLKIKDNYNPATWMLE 921
QPSIDIFEAFD+L+L+K GG++IYSG LG++S K+I+YFE+IPGV KIKD YNPATWMLE
Sbjct: 1109 QPSIDIFEAFDELLLLKRGGQVIYSGQLGRNSQKMIEYFEAIPGVPKIKDKYNPATWMLE 1168
Query: 922 VSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSPGSKDLHFPTHFPQNGWEQFKA 981
VSS + E L +DF + Y+ S L+++NK L QLS P PG+ DLHFPT + Q+ QF+A
Sbjct: 1169 VSSVAAEVRLNMDFAEYYKTSDLYKQNKVLVNQLSQPEPGTSDLHFPTKYSQSTIGQFRA 1228
Query: 982 CLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGKKIKTQQEVFNMFGAMYSAAIF 1041
CLWKQ L+YWR+P YNL R FT +LL G +FW+ G K+ + + GAMY+A +F
Sbjct: 1229 CLWKQWLTYWRSPDYNLVRFSFTLFTALLLGTIFWKIGTKMGNANSLRMVIGAMYTAVMF 1288
Query: 1042 FGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPM 1101
GINNC++V P+V+ ERTV YRER AGMYS Y+ AQV++E+PY+F+Q Y +I Y M
Sbjct: 1289 IGINNCATVQPIVSIERTVFYRERAAGMYSAMPYAIAQVVMEIPYVFVQTAYYTLIVYAM 1348
Query: 1102 IGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQLASILASSSYSMLNLFCGYSI 1161
+ + W+A K FW ++ + LYF Y GM+ V+++PN ++A+I A++ YS+ NLF G+ I
Sbjct: 1349 MSFQWTAAKFFWFFFVSYFSFLYFTYYGMMTVAISPNHEVAAIFAAAFYSLFNLFSGFFI 1408
Query: 1162 TKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISAFGET-KTVSGFLDDYFGFNHD 1220
+ +IPKWWIW Y+LCP +W + G++ +QYGD+E+ IS G++ +T+S ++ +FG++
Sbjct: 1409 PRPRIPKWWIWYYWLCPLAWTVYGLIVTQYGDLEQIISVPGQSNQTISYYVTHHFGYHRK 1468
Query: 1221 LLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252
+ VV VL++F + FA ++A I KLNFQ R
Sbjct: 1469 FMPVVAPVLVLFAVFFAFMYAICIKKLNFQHR 1500
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7FMW4|PDR15_ORYSJ Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1485 bits (3844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 711/1291 (55%), Positives = 945/1291 (73%), Gaps = 44/1291 (3%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG P GKTTLL AL+GKL +L+ SGEV+YNGY LDEFVPQKT+AYISQ+D+H
Sbjct: 224 MTLLLGPPSSGKTTLLLALAGKLDPTLETSGEVTYNGYGLDEFVPQKTAAYISQHDVHAG 283
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMTV+ET+DFSA+CQG G R + +KE+ K E+ GI+PDP+VD +MKA SVEG LQT
Sbjct: 284 EMTVKETLDFSAKCQGVGQRYELLKELAKKERQLGIYPDPEVDLFMKATSVEG--STLQT 341
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYIL+ILGLD+CAD IVGD +RRG+SGGQKKRLTT E++VGPT+ LFMDEIS GLDSSTT
Sbjct: 342 DYILRILGLDMCADVIVGDELRRGISGGQKKRLTTAEMLVGPTKVLFMDEISTGLDSSTT 401
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQI+ ++ +VH+ +AT L+SLLQPAPE F+LFDDVML++EG+IVY GPR ++ +FFE C
Sbjct: 402 FQIIRCIQQIVHMGEATVLVSLLQPAPEIFELFDDVMLLSEGQIVYQGPREHVLEFFERC 461
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GFRCPERKGVADFLQEV S+KDQEQYW + + PY YVS+ +F+ KFK H+G L+++L+
Sbjct: 462 GFRCPERKGVADFLQEVTSKKDQEQYWIQSEKPYRYVSVPEFVAKFKKFHMGKSLKKQLS 521
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
FNK + HK AL F K S++ ELLK ++E+LLMKRNSF+Y+FK+ Q +++A I T
Sbjct: 522 VPFNKGKIHKSALVFSKQSVSTLELLKTSCSKEWLLMKRNSFVYIFKTVQGILVALIAST 581
Query: 361 AFLRSQLAV-DVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWA 419
FLR+QL D Y+GAL + ++ + +GF +L++T +RL VFYK RD FY W
Sbjct: 582 VFLRTQLNTRDEDDGQIYIGALIFVMITNMFSGFADLSLTLARLPVFYKHRDFLFYRPWT 641
Query: 420 YAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIAS 479
+A+P ++++P SL ES +W ++TYY +G++PE RFF+ L++F + + LFR A
Sbjct: 642 FALPNVLVRIPSSLFESIIWVAITYYTMGFAPEASRFFKHLLVVFMLQQMAAGLFRVTAG 701
Query: 480 LFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAP 539
L RTV V+ G++A+L++ + GGFI+PK ++P W W +W PLTY I + NE +P
Sbjct: 702 LCRTVVVTNTAGSLAVLIMFVLGGFILPKDAIPKWWVWAYWCSPLTYAYIAFSSNEMHSP 761
Query: 540 RW-EKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGK 598
RW +K +G LE+ G+ + +YWI+ AL+GFT+LFNV+F+L+L +L GK
Sbjct: 762 RWMDKFVPDGKRLGVAVLENSGVFTNKEWYWIATGALLGFTILFNVLFSLSLMYLNPVGK 821
Query: 599 SRTIIAYEKYSK--LQDQKD----------------------------------GSSGSD 622
++I+ E S+ +Q+ K+ ++ SD
Sbjct: 822 PQSILPEETDSQENIQEGKNKAHIKQIITVETPEPVSPNSIITLDKVIQQLRGYSANTSD 881
Query: 623 RDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSD 682
R +I+A +T P RG MVLPFEPL ++F ++ YYVD P MK +G KLQLLS
Sbjct: 882 RSHSYINAAGRT--APGRG-MVLPFEPLYMSFNEINYYVDMPLEMKSQGVTADKLQLLSG 938
Query: 683 ITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYC 742
I+G FRPG+LTALMGVSGAGKTTLMDVLSGRKTGG IEG+I I GYPK Q TFARISGYC
Sbjct: 939 ISGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIEGEIYISGYPKNQATFARISGYC 998
Query: 743 EQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802
EQNDIHSP ITV ES++FSA+LRL E++ + K FV+EV++ +EL G+K ++VGLPGV+
Sbjct: 999 EQNDIHSPQITVRESLLFSAFLRLPKEVNDQEKKIFVDEVMELVELTGLKDAIVGLPGVN 1058
Query: 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQ 862
GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR V+N V TGRTVVCTIHQ
Sbjct: 1059 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQ 1118
Query: 863 PSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFESIPGVLKIKDNYNPATWMLEV 922
PSIDIFEAFD+L+L+K GG++IYSGPLG +S KV++YFE+IPGV KI++N NPATWML+V
Sbjct: 1119 PSIDIFEAFDELLLLKRGGQVIYSGPLGTNSHKVVEYFEAIPGVPKIEENRNPATWMLDV 1178
Query: 923 SSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSPGSKDLHFPTHFPQNGWEQFKAC 982
SS++ E L +DF + YR ST+HQ K L K+LS+P PGS DL+FP+ + Q+ + QFK C
Sbjct: 1179 SSAASEVRLEIDFAEYYRSSTMHQRTKALVKELSNPPPGSDDLYFPSQYSQSTFNQFKLC 1238
Query: 983 LWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGKKIKTQQEVFNMFGAMYSAAIFF 1042
LWKQ +YWR+P YNL RI F +L+ G +FW+ G K+++ +++ + G+MY+A +F
Sbjct: 1239 LWKQWWTYWRSPDYNLVRIFFALFTALMLGTIFWRVGHKMESSKDLLVIIGSMYAAVLFV 1298
Query: 1043 GINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMI 1102
G N +V P+VA ERTV YRER AGMYS Y+ AQV+VE+PY+F++ VIY +I YPM+
Sbjct: 1299 GFENSVTVQPVVAVERTVFYRERAAGMYSAIPYALAQVVVEIPYVFVETVIYTLIVYPMM 1358
Query: 1103 GYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQLASILASSSYSMLNLFCGYSIT 1162
+ W+ K FW + +F LYF Y GM+ VS++PN+Q+ASIL ++ Y++ NLF G+ I
Sbjct: 1359 SFQWTPAKFFWFFYVSFFTFLYFTYYGMMNVSVSPNLQVASILGAAFYTLFNLFSGFFIP 1418
Query: 1163 KRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISAFGET-KTVSGFLDDYFGFNHDL 1221
+ +IPKWW+W Y+LCP +W + G++ SQYGD+E I+ G++ + V F+ DYFG++ D
Sbjct: 1419 RPKIPKWWVWYYWLCPVAWTVYGLIVSQYGDVEDFITVPGQSDQQVRPFIKDYFGYDPDF 1478
Query: 1222 LGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252
+GVV VL F + FA +AY I LNFQ+R
Sbjct: 1479 MGVVAAVLAGFTVFFAFTYAYSIRTLNFQQR 1509
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1252 | ||||||
| 255542838 | 1458 | ATP-binding cassette transporter, putati | 0.929 | 0.798 | 0.765 | 0.0 | |
| 224099040 | 1476 | predicted protein [Populus trichocarpa] | 0.999 | 0.847 | 0.746 | 0.0 | |
| 224112072 | 1455 | predicted protein [Populus trichocarpa] | 1.0 | 0.860 | 0.748 | 0.0 | |
| 356565445 | 1452 | PREDICTED: pleiotropic drug resistance p | 0.999 | 0.861 | 0.753 | 0.0 | |
| 224109722 | 1406 | predicted protein [Populus trichocarpa] | 0.963 | 0.857 | 0.744 | 0.0 | |
| 224132634 | 1250 | predicted protein [Populus trichocarpa] | 0.997 | 0.999 | 0.738 | 0.0 | |
| 296089838 | 1406 | unnamed protein product [Vitis vinifera] | 0.936 | 0.833 | 0.725 | 0.0 | |
| 225450466 | 1448 | PREDICTED: pleiotropic drug resistance p | 0.936 | 0.809 | 0.725 | 0.0 | |
| 224099038 | 1459 | predicted protein [Populus trichocarpa] | 0.936 | 0.803 | 0.741 | 0.0 | |
| 255556558 | 1393 | ATP-binding cassette transporter, putati | 0.949 | 0.853 | 0.735 | 0.0 |
| >gi|255542838|ref|XP_002512482.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223548443|gb|EEF49934.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2045 bits (5298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 958/1252 (76%), Positives = 1101/1252 (87%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG PGCGKTTLL ALSG+LSHSLKV GE+SYNGYRL+EFVPQKTSAYISQYDLHI
Sbjct: 190 MTLLLGPPGCGKTTLLLALSGELSHSLKVRGEISYNGYRLEEFVPQKTSAYISQYDLHIP 249
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMTVRE IDFSA+CQG G RA+ + EV + EK AGI PD DVDAYMKA+S+EGL+ N+QT
Sbjct: 250 EMTVREAIDFSAQCQGIGSRAEIVTEVSRREKQAGIVPDTDVDAYMKAVSIEGLKSNIQT 309
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYILKILGLDICADT+VGD MRRG+SGGQKKRLTTGE+IVGP + LFMDE+SNGLDSSTT
Sbjct: 310 DYILKILGLDICADTMVGDAMRRGISGGQKKRLTTGEMIVGPAKTLFMDEVSNGLDSSTT 369
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQIVS L+HLVHITDATALISLLQPAPETFDLFDDV+LMAEGKIVYHGPR IC FFE+C
Sbjct: 370 FQIVSCLQHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPRPSICSFFEEC 429
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GFRCP+RKGVADFLQEVISRKDQ QYW R D PY YVS+DQF+ KF+ S LG KL EEL+
Sbjct: 430 GFRCPQRKGVADFLQEVISRKDQAQYWCRTDQPYNYVSVDQFVKKFRESQLGQKLTEELS 489
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
F+KSE+HK ALSFK+YSL K E+ KAC+ REFLLMKRNSFIYVFK+ QLVIIA+ITMT
Sbjct: 490 KPFDKSESHKSALSFKQYSLPKLEMFKACSRREFLLMKRNSFIYVFKTVQLVIIAAITMT 549
Query: 361 AFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAY 420
LR++L VDVLHAN Y+GA+FY++++L+V+GFPEL MT SRLAVF+KQ++LCFYPAWAY
Sbjct: 550 VLLRTRLGVDVLHANDYMGAIFYSILLLLVDGFPELQMTVSRLAVFHKQKELCFYPAWAY 609
Query: 421 AIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480
+PA++LK+PLSLLE+ VWTSLTYYVIG+SPE GRFFRQ LLLF +HLTSIS+FR IAS+
Sbjct: 610 VVPATLLKIPLSLLEAVVWTSLTYYVIGFSPEAGRFFRQLLLLFVIHLTSISMFRFIASI 669
Query: 481 FRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPR 540
+T S G++ IL LLFGGFIIPK SMP WL WGFW+ PLTYGEIG+ VNEFLAPR
Sbjct: 670 CQTTVASTTFGSLFILTSLLFGGFIIPKPSMPPWLDWGFWINPLTYGEIGMCVNEFLAPR 729
Query: 541 WEKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSR 600
W+KI S NTT+G+QTLESRGL++D FYWIS+ AL+GFTVLFN+ FTLALT+LK PG++
Sbjct: 730 WQKIMSANTTIGQQTLESRGLHYDGYFYWISVGALLGFTVLFNIGFTLALTYLKPPGRTH 789
Query: 601 TIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYY 660
II+YEKY++LQ++ D ++ D++ + DA + G+MVLPFEPLT+TF+D+QYY
Sbjct: 790 AIISYEKYNQLQEKVDDNNHVDKNNRLADAYFMPDTRTETGRMVLPFEPLTITFQDLQYY 849
Query: 661 VDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE 720
VD P M+KRGF QK LQLL+DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG I+
Sbjct: 850 VDAPLEMRKRGFAQKNLQLLTDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGTIK 909
Query: 721 GDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
GDIRIGGYPKVQH FARISGY EQ DIHSP ITVEES+I+SAWLRL EID KTK+EFVN
Sbjct: 910 GDIRIGGYPKVQHLFARISGYVEQTDIHSPQITVEESLIYSAWLRLPSEIDPKTKSEFVN 969
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
EVL+TIELDGIK SLVGLPG+SGLSTEQRKRLTIAVELV+NPSIIFMDEPT+GLDARAAA
Sbjct: 970 EVLETIELDGIKDSLVGLPGISGLSTEQRKRLTIAVELVSNPSIIFMDEPTTGLDARAAA 1029
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900
IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFD+LIL+K GGRIIYSGPLG+HS +VI+YF
Sbjct: 1030 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDELILLKIGGRIIYSGPLGRHSSRVIEYF 1089
Query: 901 ESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSP 960
E++PGV KI+DNYNPATWMLEV+S S E ELGVDFGQIY ESTL++ENKEL KQLSSP P
Sbjct: 1090 ENVPGVKKIEDNYNPATWMLEVTSKSAEAELGVDFGQIYEESTLYKENKELVKQLSSPMP 1149
Query: 961 GSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGK 1020
GSK+LHF T FPQNGWEQFKAC WK ++SYWR+PSYNL R+V+ A S L+G LFWQ+GK
Sbjct: 1150 GSKELHFSTRFPQNGWEQFKACFWKHHMSYWRSPSYNLTRLVYMVAASFLFGALFWQRGK 1209
Query: 1021 KIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQV 1080
+I QQ++F MFG+MY+A IFFGINNCSSV+P +ATERTVLYRERFAGMYSPWAYS AQV
Sbjct: 1210 EINNQQDLFIMFGSMYTAVIFFGINNCSSVLPYIATERTVLYRERFAGMYSPWAYSLAQV 1269
Query: 1081 LVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQ 1140
LVE+PY FI A+IYV+ITYPM+GY SAYKIFW+ + FC LL FNYMGML+VSLTPN+Q
Sbjct: 1270 LVELPYSFIIAIIYVVITYPMVGYSMSAYKIFWAFYSLFCTLLSFNYMGMLLVSLTPNIQ 1329
Query: 1141 LASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISA 1200
+ASILASS+Y+ML LF G+ + + +IPKWWIW YY+CPTSWVLNGML+SQ+GDI+KEIS
Sbjct: 1330 VASILASSTYTMLILFTGFIVPRPRIPKWWIWLYYMCPTSWVLNGMLTSQFGDIDKEISV 1389
Query: 1201 FGETKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252
FGETKTVS FL+DYFGF+H+ LGVVG VL+IFP VFASLFAYFIGKLNFQRR
Sbjct: 1390 FGETKTVSAFLEDYFGFHHNFLGVVGAVLVIFPFVFASLFAYFIGKLNFQRR 1441
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099040|ref|XP_002311359.1| predicted protein [Populus trichocarpa] gi|222851179|gb|EEE88726.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1983 bits (5137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 935/1252 (74%), Positives = 1082/1252 (86%), Gaps = 1/1252 (0%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG PGCGKTTLL ALSGKLSH+L+VSGE+SYNG+ L+EFVPQK+S YISQ+DLHI
Sbjct: 226 MTLLLGPPGCGKTTLLLALSGKLSHALEVSGEISYNGHSLEEFVPQKSSVYISQHDLHIP 285
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMTVRETIDFSARCQG G RAD M EVI+ EK AGI PDPDVDAYMKAISVEGL+ LQT
Sbjct: 286 EMTVRETIDFSARCQGIGSRADIMMEVIRREKQAGILPDPDVDAYMKAISVEGLKSTLQT 345
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYILKILGLDIC+D +VGD MRRG+SGGQKKRLTTGE+IVGP +ALFMDEISNGLDSSTT
Sbjct: 346 DYILKILGLDICSDIMVGDAMRRGISGGQKKRLTTGEMIVGPVKALFMDEISNGLDSSTT 405
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQI+S ++HL HITDAT LISLLQPAPETFDLFDD++LMAEGKIVYHGPRS I KFFEDC
Sbjct: 406 FQIMSCMQHLAHITDATVLISLLQPAPETFDLFDDIILMAEGKIVYHGPRSTISKFFEDC 465
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GFRCPERKG+ADFLQEVISRKDQ QYWHR + + Y+ +DQF+ KFK S G KL++EL+
Sbjct: 466 GFRCPERKGIADFLQEVISRKDQGQYWHRTEQLHSYIPVDQFVKKFKESQFGEKLDKELS 525
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
F+KS++HK AL+F KYSLTKWEL KAC+ REFL+MKRNSFIYV KS QLVI+ASI MT
Sbjct: 526 RPFDKSKSHKNALTFSKYSLTKWELFKACSMREFLMMKRNSFIYVLKSIQLVIVASICMT 585
Query: 361 AFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAY 420
LR+++ VD +HAN Y+GALFYAL+IL+V+G PEL MT SRLAVFYKQR+L FYPAWAY
Sbjct: 586 VLLRTRMGVDEIHANYYMGALFYALVILVVDGVPELQMTTSRLAVFYKQRELYFYPAWAY 645
Query: 421 AIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480
AIPA+ILKVPLSL+E+FVWT+LTYYVIGYSPE+ RF RQFL+LF +HL S+S+FR +AS+
Sbjct: 646 AIPAAILKVPLSLMEAFVWTALTYYVIGYSPELERFLRQFLILFLLHLASLSMFRFVASI 705
Query: 481 FRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPR 540
F+T S+ G++AI+ LLFGGF+IPK SMP+WL+WGFW+ P+TYGEIGLT NEFLAPR
Sbjct: 706 FQTAVASMTAGSIAIMGCLLFGGFVIPKPSMPAWLQWGFWISPITYGEIGLTTNEFLAPR 765
Query: 541 WEKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSR 600
WEKI SGNTT+G+QTLESRGLNF FYWIS+ AL+G +LFN+ FTLALTFLK PG SR
Sbjct: 766 WEKIVSGNTTIGQQTLESRGLNFHGYFYWISVGALMGLALLFNIGFTLALTFLKPPGNSR 825
Query: 601 TIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYY 660
II+YE+Y +LQ +KD G D DKK + + +++ GPK+G+MVLPFEPL +TF+DVQYY
Sbjct: 826 AIISYERYYQLQGRKDDVDGFDEDKK-LHSANESSPGPKKGRMVLPFEPLVMTFKDVQYY 884
Query: 661 VDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE 720
VDTP M+KRG QKKLQLLSDITG FRPGILTALMGVSGAGKTTLMDVLSGRKTGG E
Sbjct: 885 VDTPLEMRKRGVLQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGTTE 944
Query: 721 GDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
G+IRIGGYPKVQ TFARISGYCEQ DIHSP IT+EESV+FSAWLRL ID KTK +FVN
Sbjct: 945 GEIRIGGYPKVQDTFARISGYCEQADIHSPQITIEESVVFSAWLRLPSVIDPKTKFDFVN 1004
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
EVL+TIELD IK SLVG+PG+SGLSTEQRKRLTIAVELV+NPS+IFMDEPTSGLDARAAA
Sbjct: 1005 EVLETIELDWIKDSLVGIPGISGLSTEQRKRLTIAVELVSNPSVIFMDEPTSGLDARAAA 1064
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900
IVMRA KN+VETGRTV+CTIHQPSIDIFEAFD+LILMK GGR+IYSG LGQ S +I+YF
Sbjct: 1065 IVMRAAKNIVETGRTVICTIHQPSIDIFEAFDELILMKTGGRLIYSGQLGQRSSALIEYF 1124
Query: 901 ESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSP 960
E IPGV KIKDNYNPATWMLEV+S S E ELGVDFGQIY STL++EN++L +QLSS +P
Sbjct: 1125 EKIPGVPKIKDNYNPATWMLEVTSQSAEAELGVDFGQIYEGSTLYKENRKLVEQLSSKTP 1184
Query: 961 GSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGK 1020
GSKDLHFPT F QNGWEQ KACLWKQNLSYWR+P YNL RI F + +LL+G+LFWQQGK
Sbjct: 1185 GSKDLHFPTQFSQNGWEQLKACLWKQNLSYWRSPPYNLLRISFISSGALLFGVLFWQQGK 1244
Query: 1021 KIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQV 1080
I QQ++F+M GAMY+A +FFGINNCS+V+P V+ +RTVLYRERFAG YS WAYS AQ+
Sbjct: 1245 NINNQQDLFSMLGAMYTAIMFFGINNCSTVLPYVSADRTVLYRERFAGTYSAWAYSLAQL 1304
Query: 1081 LVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQ 1140
LVEVPYLF Q+VIYVI+TYPMIGY SAYKIFWSL+G FC LL FNY+GML++S+TPN Q
Sbjct: 1305 LVEVPYLFAQSVIYVIVTYPMIGYSLSAYKIFWSLYGMFCTLLCFNYLGMLLISVTPNAQ 1364
Query: 1141 LASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISA 1200
+A IL S +++ +N F G+ + K++IP WWIW YY+CPTSW L GM +SQYGD++KEIS
Sbjct: 1365 VAIILCSIAFTTMNFFAGFIVPKKRIPMWWIWLYYICPTSWALEGMFTSQYGDLDKEISV 1424
Query: 1201 FGETKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252
FGETKT S F++DYFG+ D LGVVG+VL+I PIV ASLF YFIGKLNFQRR
Sbjct: 1425 FGETKTASAFIEDYFGYRQDFLGVVGLVLIIIPIVIASLFTYFIGKLNFQRR 1476
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224112072|ref|XP_002316074.1| predicted protein [Populus trichocarpa] gi|222865114|gb|EEF02245.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1966 bits (5093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 939/1255 (74%), Positives = 1079/1255 (85%), Gaps = 3/1255 (0%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG PGCGKTTLL ALSGK S+SLKV+GE+SYNG+RL+EFVPQKT+AY+SQYDLHI
Sbjct: 201 MTLLLGPPGCGKTTLLKALSGKPSNSLKVAGEISYNGHRLEEFVPQKTAAYVSQYDLHIP 260
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMTVRETIDFSARCQG G RA+ M EV + EK AGI PD DVDAYMKAISVEGL+ NLQT
Sbjct: 261 EMTVRETIDFSARCQGAGSRAEIMMEVSRREKQAGILPDSDVDAYMKAISVEGLKSNLQT 320
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYILKILGLDICADT+VGD MRRG+SGGQKKRL+TGE++VGP +ALFMDEISNGLDSSTT
Sbjct: 321 DYILKILGLDICADTMVGDTMRRGISGGQKKRLSTGEMVVGPMKALFMDEISNGLDSSTT 380
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQIVS ++HL HITDAT LISLLQPAPE FDLFDD+MLMAEG +VYHGPRS +C+FFED
Sbjct: 381 FQIVSCMQHLAHITDATVLISLLQPAPEIFDLFDDIMLMAEGMVVYHGPRSSVCRFFEDS 440
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GFRCPERK VADFLQEVISRKDQ QYW+ + P+ YVS++QF+ KFK S LG L+EE+
Sbjct: 441 GFRCPERKEVADFLQEVISRKDQRQYWYCTEQPHSYVSVEQFVKKFKESQLGQMLDEEIM 500
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
F+KS +HK AL F+KYSL+KWEL K C+TREF+LMKRNSFIYVFK TQLVI ASITMT
Sbjct: 501 KPFDKSNSHKTALCFRKYSLSKWELFKVCSTREFVLMKRNSFIYVFKCTQLVITASITMT 560
Query: 361 AFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAY 420
FLR+++AVD +HA+ Y+ ALF+AL IL +G PEL+MT SRLAVFYKQR+LCFYPAWAY
Sbjct: 561 VFLRTRMAVDAIHASYYMSALFFALTILFSDGIPELHMTVSRLAVFYKQRELCFYPAWAY 620
Query: 421 AIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480
+P +ILKVPLSL+E+FVWT+LTYYV+GYSPE GRFFRQFLLLF VH TSIS+FR +ASL
Sbjct: 621 VVPTAILKVPLSLVEAFVWTTLTYYVVGYSPEFGRFFRQFLLLFLVHSTSISMFRFVASL 680
Query: 481 FRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPR 540
F+T+ S+ G +A+L+ LLFGGF+IPK SMP WL WGFW+ PL YGEIGL++NEFL PR
Sbjct: 681 FQTMVASVTAGGLALLITLLFGGFLIPKPSMPVWLGWGFWISPLAYGEIGLSLNEFLTPR 740
Query: 541 WEKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSR 600
W K SGNTT+ +QTLESRGLNF FYWIS+ ALIG TVLFNV F LALTFLKSPG SR
Sbjct: 741 WAKTVSGNTTIQQQTLESRGLNFHGYFYWISVGALIGLTVLFNVGFALALTFLKSPGNSR 800
Query: 601 TIIAYEKYSKLQDQKDGSSGSD--RDKKHID-APLKTTAGPKRGKMVLPFEPLTLTFEDV 657
II+YE+Y + Q + D + D DKK + A K++ G K+G+M LPFEPLT+TF+DV
Sbjct: 801 AIISYERYYQQQGKLDDGASFDINNDKKTLTCACPKSSPGDKKGRMALPFEPLTMTFKDV 860
Query: 658 QYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG 717
+YYVDTP M+KRGF QKKLQLLSDITG FRPGILTALMGVSGAGKTTLMDVLSGRKTGG
Sbjct: 861 RYYVDTPLEMRKRGFPQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGG 920
Query: 718 IIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAE 777
IEG+IRIGGYPKVQH+FAR+SGYCEQ DIHSP ITVEESVI+SAWLRL PEID KTK E
Sbjct: 921 TIEGEIRIGGYPKVQHSFARVSGYCEQTDIHSPQITVEESVIYSAWLRLPPEIDTKTKYE 980
Query: 778 FVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837
FVN+VL+TIELD IK SLVG+PG+SGLS EQRKRLT+AVELVANPSIIFMDEPTSGLDAR
Sbjct: 981 FVNQVLETIELDEIKDSLVGIPGISGLSIEQRKRLTVAVELVANPSIIFMDEPTSGLDAR 1040
Query: 838 AAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVI 897
AAAIVMR VKN+VETGRT+VCTIHQPSIDIFEAFD+LILMK GGRIIYSGPLGQ S KVI
Sbjct: 1041 AAAIVMRVVKNIVETGRTIVCTIHQPSIDIFEAFDELILMKIGGRIIYSGPLGQRSSKVI 1100
Query: 898 DYFESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSS 957
+YFE+IPGV KIK+ YNPATWMLEVSS + E +LGVDFG+ Y STL++ENKEL KQLSS
Sbjct: 1101 EYFENIPGVPKIKNRYNPATWMLEVSSKTAEADLGVDFGEAYEGSTLYEENKELVKQLSS 1160
Query: 958 PSPGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQ 1017
P+PGSKDLHFPT FPQNGWEQ KACLWKQ+LSYWR+PSYNL RIVF +LL+G+LFWQ
Sbjct: 1161 PTPGSKDLHFPTCFPQNGWEQLKACLWKQHLSYWRSPSYNLLRIVFMSFGALLFGLLFWQ 1220
Query: 1018 QGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSF 1077
QG KI QQ++F++ G+MYS IFFGINNCS V+ VA ERTV YRERFAGMYS WAYSF
Sbjct: 1221 QGNKINNQQDLFSIAGSMYSIIIFFGINNCSPVLAFVARERTVFYRERFAGMYSSWAYSF 1280
Query: 1078 AQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTP 1137
AQVLVEVPYL I+ ++YVIITYPMIGY SAYKIFWS + FC LL+FNY+GML+VSLTP
Sbjct: 1281 AQVLVEVPYLLIEGILYVIITYPMIGYSLSAYKIFWSFYSMFCMLLFFNYLGMLLVSLTP 1340
Query: 1138 NVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKE 1197
N+Q+AS LA+ +Y+ LN F G+ + K IPKWW+W YY+CP+SW LN ML+SQYGD+ KE
Sbjct: 1341 NIQVASNLAAFAYTTLNFFSGFIVPKPYIPKWWVWLYYICPSSWTLNAMLTSQYGDVNKE 1400
Query: 1198 ISAFGETKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252
IS FGET TV+ F+ DYFGF+H+ LGVVG+VL+IFPI+ ASLFAYF G+LNFQRR
Sbjct: 1401 ISVFGETMTVADFVGDYFGFHHNFLGVVGVVLIIFPIITASLFAYFFGRLNFQRR 1455
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565445|ref|XP_003550950.1| PREDICTED: pleiotropic drug resistance protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1962 bits (5082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 944/1252 (75%), Positives = 1102/1252 (88%), Gaps = 1/1252 (0%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG P GKTTLL AL+GKL HSLKV GE+SYNG+ L+EF+PQK+SAY+SQYDLHI
Sbjct: 202 MTLLLGPPASGKTTLLLALAGKLGHSLKVQGEISYNGHMLEEFIPQKSSAYVSQYDLHIP 261
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMTVRET+DFSARCQG G R+ + EV + EK GI PDPD+DAYMKA S+ GL+ +LQT
Sbjct: 262 EMTVRETLDFSARCQGVGSRSKLLMEVSRKEKEGGIVPDPDLDAYMKATSINGLKSSLQT 321
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYILKILGLDICADT+VGDP+RRG+SGGQKKRLTTGE+IVGPT+ALFMDEISNGLDSSTT
Sbjct: 322 DYILKILGLDICADTLVGDPIRRGISGGQKKRLTTGEMIVGPTKALFMDEISNGLDSSTT 381
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQI+S L+HLVHITDATALISLLQPAPETFDLFDDV+LMAEGKIVYHGP YI +FFED
Sbjct: 382 FQIISCLQHLVHITDATALISLLQPAPETFDLFDDVILMAEGKIVYHGPCDYILEFFEDS 441
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GF+CP+RKG ADFLQEVIS+KDQ +YW+ + PY YVSIDQFI KFK GLKL+EEL+
Sbjct: 442 GFKCPQRKGTADFLQEVISKKDQAKYWNSTEKPYSYVSIDQFIEKFKDCPFGLKLKEELS 501
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
F+KS++HK AL FKKYSLTKWEL AC RE LLMK+NSF+YVFKSTQLVI+A + MT
Sbjct: 502 KPFDKSQSHKNALVFKKYSLTKWELFNACMMREILLMKKNSFVYVFKSTQLVIVAFVAMT 561
Query: 361 AFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAY 420
F+R+++ VDVLH N ++G+LFY+L+IL+V+GFPEL+MT SRLAV YKQ++LCF+PAWAY
Sbjct: 562 VFIRTRMTVDVLHGNYFMGSLFYSLIILLVDGFPELSMTVSRLAVIYKQKELCFFPAWAY 621
Query: 421 AIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480
IP+++LK+PLSLLESF+WT+L+YYVIGYSPE+GRFFRQFLLLF +H+TS+S+FR IAS+
Sbjct: 622 TIPSAVLKIPLSLLESFIWTTLSYYVIGYSPEIGRFFRQFLLLFIIHVTSVSMFRFIASV 681
Query: 481 FRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPR 540
+TV S+ GT+ IL++LLFGGFIIPK MPSWL+WGFWV PLTYGEIGLTVNEFLAPR
Sbjct: 682 CQTVVASVTAGTVTILVVLLFGGFIIPKPYMPSWLQWGFWVSPLTYGEIGLTVNEFLAPR 741
Query: 541 WEKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSR 600
WEK+ SGN T+G+Q LESRGLNFD FYWISIAALIGFTVLFNV FTL LTFL SP +SR
Sbjct: 742 WEKM-SGNRTLGQQVLESRGLNFDGYFYWISIAALIGFTVLFNVGFTLMLTFLNSPARSR 800
Query: 601 TIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYY 660
T+I+ EK+S+LQ Q++ DKKH+ + + +T ++G +VLPF+PL + F DVQYY
Sbjct: 801 TLISSEKHSELQGQQESYGSVGADKKHVGSMVGSTVQTRKGGLVLPFQPLAVAFHDVQYY 860
Query: 661 VDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE 720
VD+P M+ RGF +K+LQLLSDITG+ RPGILTALMGVSGAGKTTLMDVL GRKTGGIIE
Sbjct: 861 VDSPLEMRNRGFTEKRLQLLSDITGSLRPGILTALMGVSGAGKTTLMDVLCGRKTGGIIE 920
Query: 721 GDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
G+IRIGGYPKVQ TFAR+SGYCEQNDIHSPNITVEESV+FSAWLRL +ID KTKAEFVN
Sbjct: 921 GEIRIGGYPKVQETFARVSGYCEQNDIHSPNITVEESVMFSAWLRLPSQIDAKTKAEFVN 980
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
EV+ TIELDGIK SLVG+P +SGLSTEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAA
Sbjct: 981 EVIHTIELDGIKDSLVGMPNISGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 1040
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900
+VMRAVKNVV TGRTV CTIHQPSIDIFEAFD+LILMK GGR+ Y+GPLG+HS +VI+YF
Sbjct: 1041 VVMRAVKNVVGTGRTVACTIHQPSIDIFEAFDELILMKAGGRLTYAGPLGKHSSRVIEYF 1100
Query: 901 ESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSP 960
ESIPGV KIKDNYNP+TWMLEV+S S E ELG+DF QIYRESTL+++NKEL +QLSSP P
Sbjct: 1101 ESIPGVPKIKDNYNPSTWMLEVTSRSAEAELGIDFAQIYRESTLYEQNKELVEQLSSPPP 1160
Query: 961 GSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGK 1020
S+DL+FP+HFPQNGWEQFKACLWKQ+LSYWR+PSYNL RI+F SLL+GILFW+QGK
Sbjct: 1161 NSRDLYFPSHFPQNGWEQFKACLWKQHLSYWRSPSYNLMRIIFVAVSSLLFGILFWKQGK 1220
Query: 1021 KIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQV 1080
KI +QQ+VFN+FGAMYSAA+FFGINNCS+V+P VATERTVLYRERFAGMYSPWAYSFAQV
Sbjct: 1221 KINSQQDVFNVFGAMYSAALFFGINNCSTVLPYVATERTVLYRERFAGMYSPWAYSFAQV 1280
Query: 1081 LVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQ 1140
L+EVPY+FIQAV+YVIITYPM+ Y WSAYKIFWS FCN+LY+NY+GML+VSLTPNVQ
Sbjct: 1281 LIEVPYIFIQAVVYVIITYPMLSYDWSAYKIFWSFFSMFCNILYYNYLGMLIVSLTPNVQ 1340
Query: 1141 LASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISA 1200
LA+I+ASSSY+MLNLF GY + + +IPKWWIW YYLCP SW LNGML+SQYGD+ KEISA
Sbjct: 1341 LAAIVASSSYTMLNLFSGYFVPRLRIPKWWIWMYYLCPMSWALNGMLTSQYGDVNKEISA 1400
Query: 1201 FGETKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252
F E KT++ FL+DY+GF+HD LGVVG+VL++ PIV A LFAY IG LNFQ+R
Sbjct: 1401 FEEKKTIAKFLEDYYGFHHDFLGVVGVVLIVIPIVIAILFAYCIGNLNFQKR 1452
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109722|ref|XP_002333208.1| predicted protein [Populus trichocarpa] gi|222835114|gb|EEE73549.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1949 bits (5050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 932/1252 (74%), Positives = 1061/1252 (84%), Gaps = 46/1252 (3%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG PGCGKTT+L ALSGKLSHSLKV+GE+SYNG++L+EFVPQK+SAY+SQYDLHI
Sbjct: 201 MTLLLGPPGCGKTTMLLALSGKLSHSLKVAGEMSYNGHKLEEFVPQKSSAYVSQYDLHIP 260
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMTVRETIDFSARCQG G RA+ M EV + EK AGI PD DVDAYMKAISVEGL+ NLQT
Sbjct: 261 EMTVRETIDFSARCQGAGSRAEIMMEVSRREKQAGILPDSDVDAYMKAISVEGLKSNLQT 320
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYILKILGLDICADT+VGD MRRG+SGGQKKRLTTGE+IVGPTRALFMDEISNGLDSSTT
Sbjct: 321 DYILKILGLDICADTMVGDAMRRGISGGQKKRLTTGEMIVGPTRALFMDEISNGLDSSTT 380
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
QI+S L+HL HI DAT LISLLQPAPETFDLFDD++LM EGKIVYHGPRS ICKFFEDC
Sbjct: 381 LQIISCLQHLSHIMDATVLISLLQPAPETFDLFDDIILMTEGKIVYHGPRSSICKFFEDC 440
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GFRCPERKGVADFLQEVISRKDQ QYW + PY YVS+DQF+ KFK S LG LEEE++
Sbjct: 441 GFRCPERKGVADFLQEVISRKDQGQYWFLTEEPYRYVSVDQFVKKFKESQLGKNLEEEIS 500
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
F+KS+ HK ALSF YSLTKWE+ KAC+ REFLLMKRNSFIYVFK+TQL IIASITMT
Sbjct: 501 KPFDKSKNHKSALSFTSYSLTKWEMFKACSVREFLLMKRNSFIYVFKTTQLFIIASITMT 560
Query: 361 AFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAY 420
LR+++A+D +HA+ Y+GALFY L+IL+V+GFPEL MT SRLAVFYK R+LCFYPAWAY
Sbjct: 561 VLLRTRMAIDAIHASYYMGALFYGLLILLVDGFPELQMTVSRLAVFYKHRELCFYPAWAY 620
Query: 421 AIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480
AIP++ILKVP+SLLE+FVWT+LTYYVIGYSPE GRF RQFLLLF VHLTS S+FR +AS+
Sbjct: 621 AIPSAILKVPVSLLEAFVWTALTYYVIGYSPEFGRFLRQFLLLFLVHLTSTSMFRFVASV 680
Query: 481 FRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPR 540
F+TV S G++AIL+ +FGGF+I K +MP WL WGFW+ PLTYGEIGLTVNEFLAPR
Sbjct: 681 FQTVVASTAAGSLAILVASVFGGFVIAKPAMPVWLAWGFWISPLTYGEIGLTVNEFLAPR 740
Query: 541 WEKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSR 600
WEK+ SG T++G+QTLESRGL+F FYWIS+ ALIG TVL N+ FT+ALTFLK
Sbjct: 741 WEKVVSGYTSIGQQTLESRGLDFHGYFYWISVGALIGMTVLLNIGFTMALTFLKR----- 795
Query: 601 TIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYY 660
+MVLPFEPL +TF DVQYY
Sbjct: 796 -----------------------------------------RMVLPFEPLAMTFADVQYY 814
Query: 661 VDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE 720
VDTP M+KRG QKKL+LLSDITG F+PGILTALMGVSGAGKTTLMDVLSGRKTGG IE
Sbjct: 815 VDTPLEMRKRGNQQKKLRLLSDITGAFKPGILTALMGVSGAGKTTLMDVLSGRKTGGTIE 874
Query: 721 GDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
G+IRIGGY KVQ +FARISGYCEQ DIHSP ITVEES+++SAWLRL PEI+ +TK EFVN
Sbjct: 875 GEIRIGGYLKVQDSFARISGYCEQTDIHSPQITVEESLVYSAWLRLPPEINARTKTEFVN 934
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
EV+ TIELD IK SLVG+PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA
Sbjct: 935 EVIDTIELDEIKDSLVGMPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 994
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900
IVMRA KN+VETGRTVVCTIHQPSIDIFEAFD+LILMK GGRIIYSGPLGQ S +VI+YF
Sbjct: 995 IVMRAAKNIVETGRTVVCTIHQPSIDIFEAFDELILMKIGGRIIYSGPLGQGSSRVIEYF 1054
Query: 901 ESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSP 960
ESIPGV KIKDNYNPATW+LEV+S S E ELGVDFG+IY STL+QEN++L KQLSSP+P
Sbjct: 1055 ESIPGVPKIKDNYNPATWILEVTSQSAEAELGVDFGRIYEGSTLYQENEDLVKQLSSPTP 1114
Query: 961 GSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGK 1020
GSK+LHFPT FPQNGWEQ KACLWKQNLSYWR+PSYNL RIVF + + L+G+L+WQQGK
Sbjct: 1115 GSKELHFPTRFPQNGWEQLKACLWKQNLSYWRSPSYNLVRIVFMSSGASLFGLLYWQQGK 1174
Query: 1021 KIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQV 1080
KIK +Q++FN+ G+MY+ +FFGINNCSSV+P V TERTVLYRERFAGMYS WAYSFAQV
Sbjct: 1175 KIKNEQDLFNIVGSMYALIVFFGINNCSSVLPFVTTERTVLYRERFAGMYSSWAYSFAQV 1234
Query: 1081 LVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQ 1140
LVEVPYL +Q++IY+I TYPMIGY SAYKIFWS H FC LL+FNY GML+VSLTPN+Q
Sbjct: 1235 LVEVPYLLVQSIIYLITTYPMIGYSSSAYKIFWSFHSMFCTLLFFNYQGMLLVSLTPNIQ 1294
Query: 1141 LASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISA 1200
+A+ILAS SY+MLN F G+ + K IPKWW+W YY+CPTSW LNGML+SQYGD+++EIS
Sbjct: 1295 VAAILASFSYTMLNFFSGFVVPKPHIPKWWLWLYYICPTSWALNGMLTSQYGDVDEEISV 1354
Query: 1201 FGETKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252
FGE + +S F++DYFGF+H L VVG+VL+IFPIV ASLFAYFIG+LNFQRR
Sbjct: 1355 FGEARALSDFIEDYFGFHHSFLSVVGVVLVIFPIVTASLFAYFIGRLNFQRR 1406
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132634|ref|XP_002321371.1| predicted protein [Populus trichocarpa] gi|222868367|gb|EEF05498.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1936 bits (5014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 925/1253 (73%), Positives = 1069/1253 (85%), Gaps = 4/1253 (0%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG PGCGKTT+L ALSGKLSHSLKV+GE+SYNG++L+EFVPQK+SAY+SQYDLHI
Sbjct: 1 MTLLLGPPGCGKTTMLLALSGKLSHSLKVAGEMSYNGHKLEEFVPQKSSAYVSQYDLHIP 60
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMTVRETIDFSARCQG G RA+ M EV + EK AGI PD DVDAYMKAISVEGL+ NLQT
Sbjct: 61 EMTVRETIDFSARCQGAGSRAEIMMEVSRREKQAGILPDSDVDAYMKAISVEGLKSNLQT 120
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYILKILGLDICADT+VGD MRRG+SGGQKKRLTTGE+IVGPTRALFMDEISNGLDSSTT
Sbjct: 121 DYILKILGLDICADTMVGDAMRRGISGGQKKRLTTGEMIVGPTRALFMDEISNGLDSSTT 180
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
QI+S L+HL H+ DAT LISLLQPAPETFDLFDD++LM EGKIVYHGPRS ICKFFEDC
Sbjct: 181 LQIISCLQHLSHMMDATVLISLLQPAPETFDLFDDIILMTEGKIVYHGPRSSICKFFEDC 240
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GFRCPERKGVADFLQEVISRKDQ QYW + PY YVS+DQF+ KFK S LG LEEE++
Sbjct: 241 GFRCPERKGVADFLQEVISRKDQGQYWFLTEQPYRYVSVDQFVKKFKESQLGKNLEEEIS 300
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
F+KS+ HK ALSF YSLTKWE+ KAC+ REFLLMKRNSFIYVFK+TQL IIASITMT
Sbjct: 301 KPFDKSKNHKSALSFTSYSLTKWEMFKACSVREFLLMKRNSFIYVFKTTQLFIIASITMT 360
Query: 361 AFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAY 420
LR+++A+D +HA+ Y+GALFY L+IL+V+GFPEL MT SRLAVFYK R+LCFYPAWAY
Sbjct: 361 VLLRTRMAIDAIHASYYMGALFYGLLILLVDGFPELQMTVSRLAVFYKHRELCFYPAWAY 420
Query: 421 AIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480
AIP++ILKVP+SLLE+FVWT+LTYYVIGYSPE GRF RQFLLLF VHLTS S+FR +AS+
Sbjct: 421 AIPSAILKVPVSLLEAFVWTALTYYVIGYSPEFGRFLRQFLLLFLVHLTSTSMFRFVASV 480
Query: 481 FRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPR 540
F+TV S G++AIL+ +FGGF+I K +MP WL WGFW+ PLTYGEIGLTVNEFLAPR
Sbjct: 481 FQTVVASTAAGSLAILVASVFGGFVIAKPAMPVWLAWGFWISPLTYGEIGLTVNEFLAPR 540
Query: 541 WEKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSR 600
WEK+ SG T++G+QTLESRGL+F FYWIS+ ALIG TVL N+ FT+ALTFLK PG SR
Sbjct: 541 WEKVVSGYTSIGQQTLESRGLDFHGYFYWISVGALIGMTVLLNIGFTMALTFLKPPGNSR 600
Query: 601 TIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYY 660
I+ EKY++LQ + + D+D AP K++ K+G+MVLPFEPLT+TF DVQYY
Sbjct: 601 AFISREKYNQLQGKINDRDFFDKDMTLTAAPAKSSTETKKGRMVLPFEPLTMTFTDVQYY 660
Query: 661 VDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE 720
VDTP M+KRG QKKL+LLSDITG F+PGILTALMGVSGAGKTTLMDVLSGRKTGG IE
Sbjct: 661 VDTPLEMRKRGNQQKKLRLLSDITGAFKPGILTALMGVSGAGKTTLMDVLSGRKTGGTIE 720
Query: 721 GDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
G+IRIGGY KVQ +FARISGYCEQ DIHSP ITVEES+++SAWLRL PEI+ +TK EFVN
Sbjct: 721 GEIRIGGYLKVQDSFARISGYCEQTDIHSPQITVEESLVYSAWLRLPPEINARTKTEFVN 780
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
EV+ IELD IK SL G+PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA
Sbjct: 781 EVIDIIELDEIKDSLAGMPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900
IVMRA KN+VETGRTVVCTIHQPSIDIFEAFD+LILMK GGRIIYSGPLGQ S +VI+YF
Sbjct: 841 IVMRAAKNIVETGRTVVCTIHQPSIDIFEAFDELILMKIGGRIIYSGPLGQGSSRVIEYF 900
Query: 901 ESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSP 960
ESIPGV KIKDNYNPATW+LEV+S S E ELGVDFG+IY STL+QEN++L KQLSSP+P
Sbjct: 901 ESIPGVPKIKDNYNPATWILEVTSQSAEAELGVDFGRIYEGSTLYQENEDLVKQLSSPTP 960
Query: 961 GSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGK 1020
GSK+LHFPT FPQNGWEQ KACLWKQNLSYWR+PSYNL RIVF + + L+G+L+WQQGK
Sbjct: 961 GSKELHFPTRFPQNGWEQLKACLWKQNLSYWRSPSYNLVRIVFMSSGASLFGLLYWQQGK 1020
Query: 1021 KIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYS-FAQ 1079
KIK +Q++FN+ G+MY+ +FFGINNCSSV+P + + ++ M + +
Sbjct: 1021 KIKNEQDLFNIVGSMYALIVFFGINNCSSVLPFFNRKNN---KIGYSCMLLLFCFVLLMH 1077
Query: 1080 VLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNV 1139
VLVEVPYL Q++IY+IITYPMIGY SAYKIFWS H FC LL+FNY GML+VSLTPN+
Sbjct: 1078 VLVEVPYLLAQSIIYLIITYPMIGYSSSAYKIFWSFHSMFCTLLFFNYQGMLLVSLTPNI 1137
Query: 1140 QLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEIS 1199
Q+A+ILAS SY+MLN F G+ + K IPKWW+W YY+CPTSW LNGML+SQYGD+++EIS
Sbjct: 1138 QVAAILASFSYTMLNFFSGFVVPKPHIPKWWLWLYYICPTSWALNGMLTSQYGDVDEEIS 1197
Query: 1200 AFGETKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252
FGE + +S F++DYFGF+H L VVG+VL+IFPIV ASLFAYFIG+LNFQRR
Sbjct: 1198 VFGEARALSDFIEDYFGFHHSFLSVVGVVLVIFPIVTASLFAYFIGRLNFQRR 1250
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089838|emb|CBI39657.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1931 bits (5002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 908/1252 (72%), Positives = 1072/1252 (85%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG PGCGKT+LL ALSG L SLKV+GEVSYNGYR++EFVPQKTSAYISQYDLHI
Sbjct: 155 MTLLLGPPGCGKTSLLLALSGNLDKSLKVTGEVSYNGYRMEEFVPQKTSAYISQYDLHIP 214
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMTVRETIDFSARCQG G RA++M EV + EK AGI PDPD+D YMKAISVEGL++ LQT
Sbjct: 215 EMTVRETIDFSARCQGVGSRAETMSEVSRREKQAGIVPDPDIDTYMKAISVEGLKRTLQT 274
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYILKILGLDICADT+VGD MRRG+SGGQKKRLTTGE+IVGPTRALFMDEISNGLDSSTT
Sbjct: 275 DYILKILGLDICADTMVGDAMRRGISGGQKKRLTTGEMIVGPTRALFMDEISNGLDSSTT 334
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQIV++L+ LVHI DAT L+SLLQPAPETFDLFDD++LMAEG IVYHGP S+I +FFEDC
Sbjct: 335 FQIVAYLRQLVHIIDATILVSLLQPAPETFDLFDDIILMAEGIIVYHGPCSHILEFFEDC 394
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GFRCPERKGVADFLQEVISR+DQ QYW+ + + YVS+ F KFK S G KLEE+L+
Sbjct: 395 GFRCPERKGVADFLQEVISRRDQAQYWYHTEQAHSYVSVHTFSRKFKESPFGKKLEEKLS 454
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
F+KS +HK ALSF KYSL+KWEL +AC +REFLLMKRNSFIYVFKSTQLVIIA+ITMT
Sbjct: 455 KPFDKSHSHKNALSFSKYSLSKWELFRACMSREFLLMKRNSFIYVFKSTQLVIIAAITMT 514
Query: 361 AFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAY 420
FLR+++ VD++HAN YLG+LFYAL+IL+V+GFPEL+MT SRL VFYKQRDLCFYPAWAY
Sbjct: 515 VFLRTRMDVDIIHANYYLGSLFYALVILLVDGFPELSMTVSRLPVFYKQRDLCFYPAWAY 574
Query: 421 AIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480
IPA+ILK+PLS +ES VWTSLTYYVIGYSPE GRF RQF+L F+VHL+S+S+FR AS+
Sbjct: 575 TIPATILKIPLSFVESLVWTSLTYYVIGYSPEFGRFLRQFILFFSVHLSSVSMFRFFASV 634
Query: 481 FRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPR 540
RT+ S G+ AIL++LLFGGFIIP+ SMP WLKW FW+ P+TYGEIGL VNEFLAPR
Sbjct: 635 SRTMVASATAGSFAILLVLLFGGFIIPQPSMPDWLKWAFWISPMTYGEIGLAVNEFLAPR 694
Query: 541 WEKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSR 600
W+K S NTT+GR+TLE+RGLNFD +WIS+AAL G T++FN+ FTLAL+FL++PGKSR
Sbjct: 695 WQKTLSTNTTLGRETLENRGLNFDGYLFWISLAALFGVTIIFNIGFTLALSFLQAPGKSR 754
Query: 601 TIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYY 660
II++EK S+LQ + ++G+ +K+ + P KTT G+MVLPF+PLT++F+DVQYY
Sbjct: 755 AIISHEKLSQLQGRDQSTNGAYEEKESKNPPPKTTKEADIGRMVLPFQPLTVSFQDVQYY 814
Query: 661 VDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE 720
VDTP M+++GF QKKL LL D+TG+ RPG+LTALMGVSGAGKTTLMDVL+GRKT G IE
Sbjct: 815 VDTPVEMRQKGFAQKKLHLLHDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGTIE 874
Query: 721 GDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
G+IRIGGYPKVQ TFARISGYCEQ DIHSP IT+EESVIFSAWLRLSP+ID KTKAEFVN
Sbjct: 875 GEIRIGGYPKVQETFARISGYCEQTDIHSPQITIEESVIFSAWLRLSPQIDSKTKAEFVN 934
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
EVL+TIELDGIK +LVG+PGV GLSTEQRKRLTIAVELV+NPSIIFMDEPTSGLDARAAA
Sbjct: 935 EVLETIELDGIKDALVGMPGVGGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAA 994
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900
+VMRAVKNVV+TGRT+VCTIHQPSIDIFEAFD+LIL+K GG +IY GPLGQHS +VI+YF
Sbjct: 995 VVMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDELILLKTGGHLIYCGPLGQHSSRVIEYF 1054
Query: 901 ESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSP 960
E IPGV KI++NYNPATWMLEV+S+S E ELGVDF QIY++S L++ NKEL KQLS P
Sbjct: 1055 EGIPGVPKIRNNYNPATWMLEVTSTSAEAELGVDFAQIYKDSALYENNKELVKQLSIPPH 1114
Query: 961 GSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGK 1020
GS+DLHFPT F +NGW QFK+CLWKQ+LSYWR+PSYN+ R + SLL+GILFW+QGK
Sbjct: 1115 GSEDLHFPTRFARNGWSQFKSCLWKQHLSYWRSPSYNITRTMHMLVASLLFGILFWKQGK 1174
Query: 1021 KIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQV 1080
++ QQ VFN+ G+MY A IF GINNCS+V+P V ERTVLYRE+FAGMYS WAYS AQV
Sbjct: 1175 ELNNQQGVFNVLGSMYVAVIFLGINNCSTVLPHVTNERTVLYREKFAGMYSSWAYSLAQV 1234
Query: 1081 LVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQ 1140
+E+PYLFIQ +IYVIITYPMIGYY S YKIFW + FC LLY+NY+GML+V++TP+
Sbjct: 1235 TIEIPYLFIQTLIYVIITYPMIGYYSSVYKIFWYFYAMFCTLLYYNYLGMLLVAMTPSFP 1294
Query: 1141 LASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISA 1200
+ASIL+S+ Y++ NLF G+ I + Q+PKWW+W +YL PTSW + GML+SQYGDI K+I
Sbjct: 1295 VASILSSAFYTIFNLFAGFLIPQPQVPKWWLWLFYLTPTSWSITGMLTSQYGDIHKDILV 1354
Query: 1201 FGETKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252
FGETKTV+ FL DY+GF+HD L VV ++L+ FP+ FA LF Y I +LNFQRR
Sbjct: 1355 FGETKTVATFLKDYYGFHHDRLAVVAVILIAFPLAFAFLFTYCIQRLNFQRR 1406
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450466|ref|XP_002280231.1| PREDICTED: pleiotropic drug resistance protein 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1930 bits (4999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 908/1252 (72%), Positives = 1072/1252 (85%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG PGCGKT+LL ALSG L SLKV+GEVSYNGYR++EFVPQKTSAYISQYDLHI
Sbjct: 197 MTLLLGPPGCGKTSLLLALSGNLDKSLKVTGEVSYNGYRMEEFVPQKTSAYISQYDLHIP 256
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMTVRETIDFSARCQG G RA++M EV + EK AGI PDPD+D YMKAISVEGL++ LQT
Sbjct: 257 EMTVRETIDFSARCQGVGSRAETMSEVSRREKQAGIVPDPDIDTYMKAISVEGLKRTLQT 316
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYILKILGLDICADT+VGD MRRG+SGGQKKRLTTGE+IVGPTRALFMDEISNGLDSSTT
Sbjct: 317 DYILKILGLDICADTMVGDAMRRGISGGQKKRLTTGEMIVGPTRALFMDEISNGLDSSTT 376
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQIV++L+ LVHI DAT L+SLLQPAPETFDLFDD++LMAEG IVYHGP S+I +FFEDC
Sbjct: 377 FQIVAYLRQLVHIIDATILVSLLQPAPETFDLFDDIILMAEGIIVYHGPCSHILEFFEDC 436
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GFRCPERKGVADFLQEVISR+DQ QYW+ + + YVS+ F KFK S G KLEE+L+
Sbjct: 437 GFRCPERKGVADFLQEVISRRDQAQYWYHTEQAHSYVSVHTFSRKFKESPFGKKLEEKLS 496
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
F+KS +HK ALSF KYSL+KWEL +AC +REFLLMKRNSFIYVFKSTQLVIIA+ITMT
Sbjct: 497 KPFDKSHSHKNALSFSKYSLSKWELFRACMSREFLLMKRNSFIYVFKSTQLVIIAAITMT 556
Query: 361 AFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAY 420
FLR+++ VD++HAN YLG+LFYAL+IL+V+GFPEL+MT SRL VFYKQRDLCFYPAWAY
Sbjct: 557 VFLRTRMDVDIIHANYYLGSLFYALVILLVDGFPELSMTVSRLPVFYKQRDLCFYPAWAY 616
Query: 421 AIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480
IPA+ILK+PLS +ES VWTSLTYYVIGYSPE GRF RQF+L F+VHL+S+S+FR AS+
Sbjct: 617 TIPATILKIPLSFVESLVWTSLTYYVIGYSPEFGRFLRQFILFFSVHLSSVSMFRFFASV 676
Query: 481 FRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPR 540
RT+ S G+ AIL++LLFGGFIIP+ SMP WLKW FW+ P+TYGEIGL VNEFLAPR
Sbjct: 677 SRTMVASATAGSFAILLVLLFGGFIIPQPSMPDWLKWAFWISPMTYGEIGLAVNEFLAPR 736
Query: 541 WEKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSR 600
W+K S NTT+GR+TLE+RGLNFD +WIS+AAL G T++FN+ FTLAL+FL++PGKSR
Sbjct: 737 WQKTLSTNTTLGRETLENRGLNFDGYLFWISLAALFGVTIIFNIGFTLALSFLQAPGKSR 796
Query: 601 TIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYY 660
II++EK S+LQ + ++G+ +K+ + P KTT G+MVLPF+PLT++F+DVQYY
Sbjct: 797 AIISHEKLSQLQGRDQSTNGAYEEKESKNPPPKTTKEADIGRMVLPFQPLTVSFQDVQYY 856
Query: 661 VDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE 720
VDTP M+++GF QKKL LL D+TG+ RPG+LTALMGVSGAGKTTLMDVL+GRKT G IE
Sbjct: 857 VDTPVEMRQKGFAQKKLHLLHDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGTIE 916
Query: 721 GDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
G+IRIGGYPKVQ TFARISGYCEQ DIHSP IT+EESVIFSAWLRLSP+ID KTKAEFVN
Sbjct: 917 GEIRIGGYPKVQETFARISGYCEQTDIHSPQITIEESVIFSAWLRLSPQIDSKTKAEFVN 976
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
EVL+TIELDGIK +LVG+PGV GLSTEQRKRLTIAVELV+NPSIIFMDEPTSGLDARAAA
Sbjct: 977 EVLETIELDGIKDALVGMPGVGGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAA 1036
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900
+VMRAVKNVV+TGRT+VCTIHQPSIDIFEAFD+LIL+K GG +IY GPLGQHS +VI+YF
Sbjct: 1037 VVMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDELILLKTGGHLIYCGPLGQHSSRVIEYF 1096
Query: 901 ESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSP 960
E IPGV KI++NYNPATWMLEV+S+S E ELGVDF QIY++S L++ NKEL KQLS P
Sbjct: 1097 EGIPGVPKIRNNYNPATWMLEVTSTSAEAELGVDFAQIYKDSALYENNKELVKQLSIPPH 1156
Query: 961 GSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGK 1020
GS+DLHFPT F +NGW QFK+CLWKQ+LSYWR+PSYN+ R + SLL+GILFW+QGK
Sbjct: 1157 GSEDLHFPTRFARNGWSQFKSCLWKQHLSYWRSPSYNITRTMHMLVASLLFGILFWKQGK 1216
Query: 1021 KIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQV 1080
++ QQ VFN+ G+MY A IF GINNCS+V+P V ERTVLYRE+FAGMYS WAYS AQV
Sbjct: 1217 ELNNQQGVFNVLGSMYVAVIFLGINNCSTVLPHVTNERTVLYREKFAGMYSSWAYSLAQV 1276
Query: 1081 LVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQ 1140
+E+PYLFIQ +IYVIITYPMIGYY S YKIFW + FC LLY+NY+GML+V++TP+
Sbjct: 1277 TIEIPYLFIQTLIYVIITYPMIGYYSSVYKIFWYFYAMFCTLLYYNYLGMLLVAMTPSFP 1336
Query: 1141 LASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISA 1200
+ASIL+S+ Y++ NLF G+ I + Q+PKWW+W +YL PTSW + GML+SQYGDI K+I
Sbjct: 1337 VASILSSAFYTIFNLFAGFLIPQPQVPKWWLWLFYLTPTSWSITGMLTSQYGDIHKDILV 1396
Query: 1201 FGETKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252
FGETKTV+ FL DY+GF+HD L VV ++L+ FP+ FA LF Y I +LNFQRR
Sbjct: 1397 FGETKTVATFLKDYYGFHHDRLAVVAVILIAFPLAFAFLFTYCIQRLNFQRR 1448
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099038|ref|XP_002311358.1| predicted protein [Populus trichocarpa] gi|222851178|gb|EEE88725.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1918 bits (4968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 928/1252 (74%), Positives = 1074/1252 (85%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG PGCGKTTLL AL+GKLSHSL++SGE+SYNGY L EFVPQKTSAY+SQYDLHI
Sbjct: 208 MTLLLGPPGCGKTTLLLALAGKLSHSLELSGELSYNGYGLGEFVPQKTSAYVSQYDLHIP 267
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMTVRETIDFSA CQG G RA+ + EVI+ EK AGI PD DVD YMK ISVEGL+ LQT
Sbjct: 268 EMTVRETIDFSACCQGIGSRAEILMEVIRREKQAGIHPDSDVDTYMKGISVEGLKSTLQT 327
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYILKILGLDIC+DT++GD MRRG+SGGQKKRLTTGE+IVGPT+ALFMDEISNGLDSSTT
Sbjct: 328 DYILKILGLDICSDTMIGDAMRRGISGGQKKRLTTGEMIVGPTKALFMDEISNGLDSSTT 387
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
QIVS L+ + H+T T LISLLQPAPETFDLFDDV+LMAEGKIVYHGPRS ICKFFEDC
Sbjct: 388 SQIVSCLQQMAHVTHDTVLISLLQPAPETFDLFDDVILMAEGKIVYHGPRSSICKFFEDC 447
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GFRCPERKGVADFLQEVISRKDQ QYW+ K+ PY YVSID+++ KFK S G KL+EEL+
Sbjct: 448 GFRCPERKGVADFLQEVISRKDQAQYWYCKEQPYSYVSIDEYVKKFKESEFGQKLDEELS 507
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
F KSE+HK ALSF+KYSL KWEL K C+TREFLLMKRN FIYVFKS LV IAS+TMT
Sbjct: 508 KPFAKSESHKTALSFEKYSLPKWELFKVCSTREFLLMKRNYFIYVFKSVLLVFIASVTMT 567
Query: 361 AFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAY 420
LR+++AVD +HAN Y+GALFYAL+I++V+G PEL MT SRLAVF KQR+LCFYPAWAY
Sbjct: 568 VLLRTRMAVDPIHANYYMGALFYALIIILVDGLPELLMTVSRLAVFNKQRELCFYPAWAY 627
Query: 421 AIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480
AIPA+ILKVPLS LE+FVWT+LTYYVIGYSPEV RFFRQFLL F VHLTS S++R IAS+
Sbjct: 628 AIPAAILKVPLSFLEAFVWTTLTYYVIGYSPEVSRFFRQFLLFFLVHLTSTSMYRFIASI 687
Query: 481 FRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPR 540
F+TV S + G++ +L++LLFGGF+I K SMP+WL+WGFW PLTYGEIGLTVNEFLAPR
Sbjct: 688 FQTVVASTLAGSLIVLIVLLFGGFLIQKPSMPAWLEWGFWFSPLTYGEIGLTVNEFLAPR 747
Query: 541 WEKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSR 600
W K+ S N T+G++ LESRGLNF S FYWIS+ ALIGFTVLFNV FTLALTFLKSPGK+R
Sbjct: 748 WGKVVSANATIGQRILESRGLNFHSYFYWISVGALIGFTVLFNVGFTLALTFLKSPGKTR 807
Query: 601 TIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYY 660
II+YEKY++LQ + DG ++K A K++ GP +G++VLPFE T TF+DVQYY
Sbjct: 808 AIISYEKYNRLQGKIDGGVCVGKNKTPTSACSKSSTGPNKGRLVLPFELFTFTFKDVQYY 867
Query: 661 VDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE 720
VDTP M+KRGF K+LQLLSDITG FRPGILTALMG SGAGKTTLMDVLSGRKT G IE
Sbjct: 868 VDTPLEMRKRGFLPKRLQLLSDITGAFRPGILTALMGASGAGKTTLMDVLSGRKTLGTIE 927
Query: 721 GDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
G+IRI GY KVQ TFARISGYCEQ DIHSP ITVEES+++SAWLRL PEI + K EFVN
Sbjct: 928 GEIRIAGYLKVQDTFARISGYCEQTDIHSPQITVEESLVYSAWLRLPPEIPAEKKFEFVN 987
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
EVL+TIELDGIK +LVG+PG+SGLSTEQRKRLTIAVELVANP IIFMDEPTSGLDARAAA
Sbjct: 988 EVLETIELDGIKDALVGIPGISGLSTEQRKRLTIAVELVANPYIIFMDEPTSGLDARAAA 1047
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900
+VMRAVKNV ETGRTVVCTIHQPSIDIFEAF++L+LMK GGRIIY GP+GQ S KVI+YF
Sbjct: 1048 VVMRAVKNVAETGRTVVCTIHQPSIDIFEAFEELLLMKLGGRIIYFGPVGQFSSKVIEYF 1107
Query: 901 ESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSP 960
ESIPGV KI+D YNPATWMLEV+S S E ELGVDF QIYRESTL++ENK+L +QLSSP
Sbjct: 1108 ESIPGVPKIEDKYNPATWMLEVTSRSAEAELGVDFAQIYRESTLYKENKQLVEQLSSPIS 1167
Query: 961 GSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGK 1020
GSKDLHFP+ FPQNGWEQ KAC+WKQNLSYWR+P+YNL RI + + S+L+G+LFWQQGK
Sbjct: 1168 GSKDLHFPSRFPQNGWEQLKACIWKQNLSYWRSPAYNLIRIFYIFSGSVLFGLLFWQQGK 1227
Query: 1021 KIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQV 1080
+I+ Q++FN+ G+MYSA IFFGI+NCS V+P +A ER V+YRERFAGMYS WAYSFAQV
Sbjct: 1228 RIENHQDLFNILGSMYSAIIFFGISNCSGVLPRIAAERAVMYRERFAGMYSSWAYSFAQV 1287
Query: 1081 LVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQ 1140
LVEVPYL QA+IYV IT+ MIGY S YKIFWS++G FC LL FNY+GML++S+TP++Q
Sbjct: 1288 LVEVPYLLAQAIIYVTITHTMIGYSLSPYKIFWSVYGMFCTLLSFNYLGMLLISVTPDIQ 1347
Query: 1141 LASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISA 1200
LAS L S Y+ML+LF G+ + + IPKWWIW YY+ PTSW LNG+ +SQYGD+EKEI+
Sbjct: 1348 LASALTSPFYTMLHLFSGFFVPRTYIPKWWIWLYYISPTSWQLNGLFTSQYGDLEKEITV 1407
Query: 1201 FGETKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252
FG+TK+V+ FL DYFGF+ + L VV +VL+IFPI+FASLFAYFIG+LNFQ+R
Sbjct: 1408 FGQTKSVAAFLQDYFGFHRNFLSVVAVVLIIFPIIFASLFAYFIGRLNFQKR 1459
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556558|ref|XP_002519313.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223541628|gb|EEF43177.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1890 bits (4895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 903/1227 (73%), Positives = 1033/1227 (84%), Gaps = 38/1227 (3%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
+TLLLG PGCGKTTLL ALSG+LSHSLKV GE+SYNGYRLDEFVPQKTSAYISQ+DLHI
Sbjct: 192 ITLLLGPPGCGKTTLLLALSGRLSHSLKVGGEISYNGYRLDEFVPQKTSAYISQHDLHIP 251
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMTVRE IDFSA+CQG G RA+ M EV + EK AGI PDPDVDAYMKA+S+EGL+ NLQT
Sbjct: 252 EMTVREVIDFSAQCQGIGSRAEIMTEVSRREKQAGIVPDPDVDAYMKAVSIEGLKSNLQT 311
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYILKILGLD+CADT+VGD M+RG+SGGQKKRLTTGE+IVGPT+ALFMDEISNGLDSSTT
Sbjct: 312 DYILKILGLDMCADTMVGDAMKRGISGGQKKRLTTGEMIVGPTKALFMDEISNGLDSSTT 371
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQIVS L+HLVHITDATAL+SLLQPAPETFDLFDDV+LMAEGKIVY+GPRS IC FFEDC
Sbjct: 372 FQIVSCLQHLVHITDATALVSLLQPAPETFDLFDDVILMAEGKIVYNGPRSSICNFFEDC 431
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GFRCP RK VADFLQEVISRKDQ QYW R D Y YVS+D F+ KFK SH G KL EEL+
Sbjct: 432 GFRCPPRKAVADFLQEVISRKDQGQYWCRTDQAYDYVSVDLFVKKFKESHFGQKLNEELS 491
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
F++SE HK ALSFKKYSL K EL KAC REFLLMKRN F+YVFK+ QLV I++ITMT
Sbjct: 492 KPFDRSECHKSALSFKKYSLPKLELFKACTRREFLLMKRNYFVYVFKTAQLVTISAITMT 551
Query: 361 AFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAY 420
LR++L VDVLHAN Y+GA+FYAL++L+V+G PEL MT SRLAVFYKQ++LCFYPAWAY
Sbjct: 552 VLLRTRLGVDVLHANDYMGAIFYALLLLLVDGLPELQMTVSRLAVFYKQKELCFYPAWAY 611
Query: 421 AIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480
IPA+ILK+PLS LE+FVWTSLTYYVIG+SPE GRFFRQ LLLF VHLTSIS+FR IAS+
Sbjct: 612 VIPATILKLPLSFLEAFVWTSLTYYVIGFSPEAGRFFRQLLLLFMVHLTSISMFRLIASI 671
Query: 481 FRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPR 540
F+T S+ IG++ I++ +LFGG+IIPK SMP WL WGFW+CPL YGEIGL VNEFLAPR
Sbjct: 672 FQTGVASVTIGSLFIVINVLFGGYIIPKPSMPPWLDWGFWICPLAYGEIGLGVNEFLAPR 731
Query: 541 WEKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSR 600
W++ ++L V+ T A +PG++R
Sbjct: 732 WQQSN--------------------------------VSLLTEVIGTHA-----APGRTR 754
Query: 601 TIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYY 660
II+YEKY+KLQ+Q D + D+D++ DA + GPK G+MVLPFEPL +TF+D+QYY
Sbjct: 755 AIISYEKYNKLQEQVDNNH-VDKDRRLSDARIMPNTGPKNGRMVLPFEPLAMTFQDLQYY 813
Query: 661 VDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE 720
VDTPSAM+KRGF QKKLQLL+DITG FRPG LTALMGVSGAGKTTLMDVLSGRKTGG I
Sbjct: 814 VDTPSAMRKRGFAQKKLQLLTDITGAFRPGNLTALMGVSGAGKTTLMDVLSGRKTGGTIN 873
Query: 721 GDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
GDIRIGGYPKVQ TFARISGY EQ DIHSP ITVEESVI+SAWLRL E D KTK+EFVN
Sbjct: 874 GDIRIGGYPKVQDTFARISGYVEQTDIHSPQITVEESVIYSAWLRLPSETDPKTKSEFVN 933
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
EVL+TIELD IK SLVG+PG+SGLSTEQRKRLTIAVELV+NPSIIFMDEPT+GLDARAAA
Sbjct: 934 EVLETIELDEIKDSLVGMPGISGLSTEQRKRLTIAVELVSNPSIIFMDEPTTGLDARAAA 993
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900
IVMRA KNVVETGRTVVCTIHQPSIDIFEAFD+LIL+K GGRIIYSGPLGQ S +VI+YF
Sbjct: 994 IVMRAAKNVVETGRTVVCTIHQPSIDIFEAFDELILLKIGGRIIYSGPLGQRSSRVIEYF 1053
Query: 901 ESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSP 960
E++PGV KIKDNYNPATWMLEV+S S E ELGVDF QIY ESTL++ENKEL KQL P P
Sbjct: 1054 ENVPGVPKIKDNYNPATWMLEVTSKSAEAELGVDFAQIYEESTLYKENKELIKQLQKPMP 1113
Query: 961 GSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGK 1020
GSK+L F T FPQNGWEQFKACLWK +LSYWRNPSYNL RIVF A S+++G LFWQQGK
Sbjct: 1114 GSKELQFSTRFPQNGWEQFKACLWKHHLSYWRNPSYNLTRIVFMIAGSIIFGALFWQQGK 1173
Query: 1021 KIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQV 1080
KI QQ++ +FG+MY+A IFFGINNCS+ +P V TERTV+YRE+FAGMYSPWAYSFAQV
Sbjct: 1174 KINNQQDLLIIFGSMYAAVIFFGINNCSTALPYVVTERTVMYREKFAGMYSPWAYSFAQV 1233
Query: 1081 LVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQ 1140
LVE+PY+F A+IYV+ITYPM+GY SAYKIFW+ + FC+LL FNYMG L+VSLTPN+Q
Sbjct: 1234 LVELPYMFAIAIIYVVITYPMVGYSMSAYKIFWAFYAVFCSLLSFNYMGRLIVSLTPNIQ 1293
Query: 1141 LASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISA 1200
+ASILAS SY++L LF G + + +IPKWWIW YY+CPTSWVLNG+L+SQ+GD+ KEISA
Sbjct: 1294 VASILASFSYAVLVLFSGLVVPRPRIPKWWIWLYYMCPTSWVLNGLLTSQFGDVNKEISA 1353
Query: 1201 FGETKTVSGFLDDYFGFNHDLLGVVGI 1227
FGE KTVS FL+DYFGF H+LLGVVG+
Sbjct: 1354 FGENKTVSAFLEDYFGFYHNLLGVVGV 1380
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1252 | ||||||
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.997 | 0.861 | 0.649 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.996 | 0.882 | 0.635 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.991 | 0.860 | 0.550 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.994 | 0.856 | 0.536 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.988 | 0.873 | 0.525 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.994 | 0.856 | 0.534 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.990 | 0.871 | 0.527 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.998 | 0.880 | 0.509 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.987 | 0.866 | 0.504 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.701 | 0.597 | 0.525 | 1.2e-253 |
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4415 (1559.2 bits), Expect = 0., P = 0.
Identities = 813/1252 (64%), Positives = 997/1252 (79%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
+TLLLG P CGKTTLL ALSG L ++LK SGE+SYNG+RLDEFVPQKTSAYISQYDLHIA
Sbjct: 202 LTLLLGPPSCGKTTLLKALSGNLENNLKCSGEISYNGHRLDEFVPQKTSAYISQYDLHIA 261
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMTVRET+DFSARCQG G R D M EV K EK GI PD +VDAYMKAISVEGL+++LQT
Sbjct: 262 EMTVRETVDFSARCQGVGSRTDIMMEVSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQT 321
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYILKILGLDICA+ ++GD MRRG+SGGQKKRLTT E+IVGPT+ALFMDEI+NGLDSST
Sbjct: 322 DYILKILGLDICAEILIGDVMRRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTA 381
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQIV L+ HI+ AT L+SLLQPAPE++DLFDD+MLMA+G+IVYHGPR + FFEDC
Sbjct: 382 FQIVKSLQQFAHISSATVLVSLLQPAPESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDC 441
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GFRCPERKGVADFLQEVIS+KDQ QYW +D PY +VS++ KFK +G K+E+ L+
Sbjct: 442 GFRCPERKGVADFLQEVISKKDQAQYWWHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLS 501
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
+++S++HK ALSF YSL WEL AC +RE+LLMKRN F+Y+FK+ QLV+ A ITMT
Sbjct: 502 KPYDRSKSHKDALSFSVYSLPNWELFIACISREYLLMKRNYFVYIFKTAQLVMAAFITMT 561
Query: 361 AFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAY 420
F+R+++ +D++H N+Y+ ALF+AL+IL+V+GFPEL+MTA RLAVFYKQ+ LCFYPAWAY
Sbjct: 562 VFIRTRMGIDIIHGNSYMSALFFALIILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWAY 621
Query: 421 AIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480
AIPA++LKVPLS ES VWT L+YYVIGY+PE RFF+QF+LLF VH TSIS+FR +A++
Sbjct: 622 AIPATVLKVPLSFFESLVWTCLSYYVIGYTPEASRFFKQFILLFAVHFTSISMFRCLAAI 681
Query: 481 FRTVAVSLMIGTMAXXXXXXXXXXXXPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPR 540
F+TV S+ G+ P SMP+WLKWGFW PL+YGEIGL+VNEFLAPR
Sbjct: 682 FQTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAPR 741
Query: 541 WEKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSR 600
W ++ N T+GR L++RG++++ YW+S+ AL+GFTVLFN++FTLALTFLKSP SR
Sbjct: 742 WNQMQPNNFTLGRTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTFLKSPTSSR 801
Query: 601 TIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYY 660
+I+ +K S+LQ + + S KK D+P+KT + KMVLPF+PLT+TF+D+ Y+
Sbjct: 802 AMISQDKLSELQGTEKSTEDSSVRKKTTDSPVKTE---EEDKMVLPFKPLTVTFQDLNYF 858
Query: 661 VDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXX 720
VD P M+ +G++QKKLQLLSDITG FRPGILTALMGVSGAGKTTL+DVL+GRKT
Sbjct: 859 VDMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSGYIE 918
Query: 721 XXXXXXXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
+PKVQ TFAR+SGYCEQ DIHSPNITVEESVI+SAWLRL+PEID TK +FV
Sbjct: 919 GDIRISGFPKVQETFARVSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDATTKTKFVK 978
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
+VL+TIELD IK SLVG+ GVSGLSTEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAA
Sbjct: 979 QVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 1038
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900
IVMRAVKNV +TGRT+VCTIHQPSIDIFEAFD+L+L+K GGR+IY+GPLGQHS +I+YF
Sbjct: 1039 IVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELVLLKRGGRMIYTGPLGQHSRHIIEYF 1098
Query: 901 ESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSP 960
ES+P + KIKDN+NPATWML+VSS S+E ELGVDF +IY +S L++ N EL KQLS P
Sbjct: 1099 ESVPEIPKIKDNHNPATWMLDVSSQSVEIELGVDFAKIYHDSALYKRNSELVKQLSQPDS 1158
Query: 961 GSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGK 1020
GS D+ F F Q+ W QFK+ LWK NLSYWR+PSYNL R++ T SL++G LFW+QG+
Sbjct: 1159 GSSDIQFKRTFAQSWWGQFKSILWKMNLSYWRSPSYNLMRMMHTLVSSLIFGALFWKQGQ 1218
Query: 1021 KIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQV 1080
+ TQQ +F +FGA+Y +F GINNC+S + TER V+YRERFAGMYS AY+ QV
Sbjct: 1219 NLDTQQSMFTVFGAIYGLVLFLGINNCASALQYFETERNVMYRERFAGMYSATAYALGQV 1278
Query: 1081 LVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQ 1140
+ E+PY+FIQA +VI+TYPMIG+Y SAYK+FWSL+ FC+LL FNY+ M +VS+TPN
Sbjct: 1279 VTEIPYIFIQAAEFVIVTYPMIGFYPSAYKVFWSLYSMFCSLLTFNYLAMFLVSITPNFM 1338
Query: 1141 LASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISA 1200
+A+IL S Y NLF G+ I + Q+P WWIW YYL PTSW LNG +SSQYGDI +EI+
Sbjct: 1339 VAAILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTPTSWTLNGFISSQYGDIHEEINV 1398
Query: 1201 FGETKTVSGFLDDYFGFNHDXXXXXXXXXXXXXXXXASLFAYFIGKLNFQRR 1252
FG++ TV+ FL DYFGF+HD AS+FA+F+GKLNFQRR
Sbjct: 1399 FGQSTTVARFLKDYFGFHHDLLAVTAVVQIAFPIALASMFAFFVGKLNFQRR 1450
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4337 (1531.8 bits), Expect = 0., P = 0.
Identities = 796/1252 (63%), Positives = 992/1252 (79%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
+TLLLG PGCGKTTLL ALSG L ++LK GE+SYNG+ L+E VPQKTSAYISQ+DLHIA
Sbjct: 167 LTLLLGPPGCGKTTLLKALSGNLENNLKCYGEISYNGHGLNEVVPQKTSAYISQHDLHIA 226
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMT RETIDFSARCQG G R D M EV K EK GI PDP++DAYMKAISV+GL+++LQT
Sbjct: 227 EMTTRETIDFSARCQGVGSRTDIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQT 286
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYILKILGLDICA+T+VG+ M+RG+SGGQKKRLTT E+IVGPT+ALFMDEI+NGLDSST
Sbjct: 287 DYILKILGLDICAETLVGNAMKRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTA 346
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQI+ L+ + HIT+AT +SLLQPAPE++DLFDD++LMAEGKIVYHGPR + KFFE+C
Sbjct: 347 FQIIKSLQQVAHITNATVFVSLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEEC 406
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GF+CPERKGVADFLQEVIS+KDQ QYW ++ P+ +VS+D +FK +G K+EE L+
Sbjct: 407 GFQCPERKGVADFLQEVISKKDQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALS 466
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
++ S+THK ALSF YSL KWEL +AC +REFLLMKRN F+Y+FK+ QLV+ A ITMT
Sbjct: 467 KPYDISKTHKDALSFNVYSLPKWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIITMT 526
Query: 361 AFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAY 420
F+R+++ +D++H N+Y+ LF+A ++L+V+G PEL+MT RL+VFYKQ+ LCFYPAWAY
Sbjct: 527 VFIRTRMDIDIIHGNSYMSCLFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAY 586
Query: 421 AIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480
AIPA++LK+PLS ES VWT LTYYVIGY+PE RFFRQF++LF VH TSIS+FR IA++
Sbjct: 587 AIPATVLKIPLSFFESLVWTCLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAAI 646
Query: 481 FRTVAVSLMIGTMAXXXXXXXXXXXXPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPR 540
F+T ++ G+ P MP WLKWGFWV P++Y EIGL+VNEFLAPR
Sbjct: 647 FQTGVAAMTAGSFVMLITFVFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLAPR 706
Query: 541 WEKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSR 600
W+K+ N T+GR LESRGLN+D YW+S++AL+G T++FN +FTLAL+FLKSP SR
Sbjct: 707 WQKMQPTNVTLGRTILESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSR 766
Query: 601 TIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYY 660
+I+ +K S+LQ KD S + K +D+ +KT P GKM+LPF+PLT+TF+D+ YY
Sbjct: 767 PMISQDKLSELQGTKDSSV---KKNKPLDSSIKTNEDP--GKMILPFKPLTITFQDLNYY 821
Query: 661 VDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXX 720
VD P MK +G+N+KKLQLLS+ITG FRPG+LTALMG+SGAGKTTL+DVL+GRKT
Sbjct: 822 VDVPVEMKGQGYNEKKLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIE 881
Query: 721 XXXXXXXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
+ KVQ TFAR+SGYCEQ DIHSP+ITVEES+I+SAWLRL PEI+ +TK FV
Sbjct: 882 GEIRISGFLKVQETFARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFVK 941
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
+VL+TIEL+ IK +LVG+ GVSGLSTEQRKRLT+AVELVANPSIIFMDEPT+GLDARAAA
Sbjct: 942 QVLETIELEEIKDALVGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAA 1001
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900
IVMRAVKNV ETGRT+VCTIHQPSI IFEAFD+L+L+K GGR+IYSGPLGQHS VI+YF
Sbjct: 1002 IVMRAVKNVAETGRTIVCTIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYF 1061
Query: 901 ESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSP 960
++IPGV KI+D YNPATWMLEV+S S+ETEL +DF +IY ES L++ N EL K+LS P
Sbjct: 1062 QNIPGVAKIRDKYNPATWMLEVTSESVETELDMDFAKIYNESDLYKNNSELVKELSKPDH 1121
Query: 961 GSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGK 1020
GS DLHF F QN WEQFK+CLWK +LSYWR+PSYNL RI T S ++G+LFW QGK
Sbjct: 1122 GSSDLHFKRTFAQNWWEQFKSCLWKMSLSYWRSPSYNLMRIGHTFISSFIFGLLFWNQGK 1181
Query: 1021 KIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQV 1080
KI TQQ +F + GA+Y +F GINNC+S + TER V+YRERFAGMYS +AY+ AQV
Sbjct: 1182 KIDTQQNLFTVLGAIYGLVLFVGINNCTSALQYFETERNVMYRERFAGMYSAFAYALAQV 1241
Query: 1081 LVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQ 1140
+ E+PY+FIQ+ +VI+ YPMIG+Y S K+FWSL+ FCNLL FNY+ M ++S+TPN
Sbjct: 1242 VTEIPYIFIQSAEFVIVIYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFM 1301
Query: 1141 LASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISA 1200
+A+IL S ++ N+F G+ I K QIPKWW+W YY+ PTSW LN SSQYGDI ++I+A
Sbjct: 1302 VAAILQSLFFTTFNIFAGFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKINA 1361
Query: 1201 FGETKTVSGFLDDYFGFNHDXXXXXXXXXXXXXXXXASLFAYFIGKLNFQRR 1252
FGETKTV+ FL+DYFGF+HD A+++A+F+ KLNFQ+R
Sbjct: 1362 FGETKTVASFLEDYFGFHHDRLMITAIILIAFPIALATMYAFFVAKLNFQKR 1413
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3649 (1289.6 bits), Expect = 0., P = 0.
Identities = 692/1257 (55%), Positives = 905/1257 (71%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG P GKTTLL AL+GKL SL VSGEV+YNGYRL+EFVP KTSAYISQ DLH+
Sbjct: 197 MTLLLGPPSSGKTTLLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVG 256
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
MTV+ET+DFSARCQG G R D + E+ + EK AGIFP+ DVD +MKA + +G++ +L T
Sbjct: 257 IMTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLIT 316
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DY LKILGLDIC DTIVGD M RG+SGGQKKR+TTGE+IVGPT+ LFMDEIS GLDSSTT
Sbjct: 317 DYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 376
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQIV L+ +VH+T+AT LISLLQPAPETFDLFDD++L++EG+IVY GPR +I +FFE
Sbjct: 377 FQIVKCLQQIVHLTEATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESF 436
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GF+CPERKG ADFLQEV S+KDQEQYW + PY Y+ + +F + FK H+G KL EL+
Sbjct: 437 GFKCPERKGTADFLQEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELS 496
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
++KS++HK AL F KYS+ K ELLK+C +E++LMKRNSF YVFK+ Q++IIA+IT T
Sbjct: 497 VPYDKSKSHKAALMFDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITST 556
Query: 361 AFLRSQLAV-DVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWA 419
+LR+++ + + AN Y+G+L +A+++ + NG E+ MT RL VFYKQRDL F+P W
Sbjct: 557 LYLRTEMHTRNEIDANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWT 616
Query: 420 YAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIAS 479
Y +P +L +P+S+ ES W +TYY IGY+P+ RFF+QFL++F + + +FR IAS
Sbjct: 617 YTLPTFLLGIPISIFESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIAS 676
Query: 480 LFRTVAVSLMIGTMAXXXXXXXXXXXXPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAP 539
RT+ ++ G + P+ +P W +W +W+ PL+Y +TVNE AP
Sbjct: 677 TCRTMTIANTGGVLVLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAP 736
Query: 540 RWEKITSGNTT--VGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPG 597
RW SGN+T +G L + D ++YWI + L+GFTV+FN FTLALT+L G
Sbjct: 737 RWMNKMSGNSTTRLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLG 796
Query: 598 KSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDV 657
K++ I+ E+ ++ G +GS+++ + + K+G MVLPF PL ++F+DV
Sbjct: 797 KAQAILPKEE----DEEAKGKAGSNKETE------MESVSAKKG-MVLPFTPLAMSFDDV 845
Query: 658 QYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXX 717
+Y+VD P+ M+++G + +LQLL +T FRPG+LTALMGVSGAGKTTLMDVL+GRKT
Sbjct: 846 KYFVDMPAEMREQGVQETRLQLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG 905
Query: 718 XXXXXXXXXXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAE 777
+PK Q TFARISGYCEQ DIHSP +TV ES+IFSA+LRL+ E+ + K
Sbjct: 906 YIEGDVRVSGFPKKQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLM 965
Query: 778 FVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837
FV++V++ +EL ++ ++VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR
Sbjct: 966 FVDQVMELVELVDLRDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1025
Query: 838 AAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVI 897
AAAIVMRAV+N V+TGRTVVCTIHQPSIDIFEAFD+L+LMK GG +IYSGPLG++S KV+
Sbjct: 1026 AAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVV 1085
Query: 898 DYFESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSS 957
+YFES PGV KI + YNPATWMLE SS + E +LGVDF ++Y+ S L Q NK L ++LS
Sbjct: 1086 EYFESFPGVPKIPEKYNPATWMLEASSLAAELKLGVDFAELYKASALCQRNKALVQELSV 1145
Query: 958 PSPGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQ 1017
P G+ DL+F T F QN W QFK+CLWKQ +YWR+P YNL R +FT A SL+ G +FWQ
Sbjct: 1146 PPQGATDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQ 1205
Query: 1018 QGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSF 1077
G K Q++ + GA+Y+A +F GINNCS+V P+VA ERTV YRE+ AGMYS Y+
Sbjct: 1206 IGGKRSNVQDLTMVIGAIYAAVVFVGINNCSTVQPMVAVERTVFYREKAAGMYSAIPYAI 1265
Query: 1078 AQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTP 1137
+QV E+PY+ IQ Y +I Y M+G+ W A K W + + + LY+ Y GM+ VSLTP
Sbjct: 1266 SQVTCELPYVLIQTTYYSLIIYSMVGFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTP 1325
Query: 1138 NVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKE 1197
N Q+ASI AS+ Y + NLF G+ I + +IPKWW+W Y++CP +W + G+++SQYGD+E
Sbjct: 1326 NQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETP 1385
Query: 1198 ISAFGETK--TVSGFLDDYFGFNHDXXXXXXXXXXXXXXXXASLFAYFIGKLNFQRR 1252
I+ G TV ++ D +GF D A +FA+ I LNFQ R
Sbjct: 1386 IALLGGAPGLTVKQYIKDQYGFESDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3517 (1243.1 bits), Expect = 0., P = 0.
Identities = 675/1259 (53%), Positives = 881/1259 (69%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG P GKTTLL AL+GKL +L++SG ++Y G+ EFVPQKT AYISQ+DLH
Sbjct: 203 MTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFG 262
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMTVRE +DFS RC G G R M E+ + EK GI PDP +DA+MK+I++ G E +L T
Sbjct: 263 EMTVREILDFSGRCLGVGSRYQLMSELSRREKEEGIKPDPKIDAFMKSIAISGQETSLVT 322
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DY+LKILGLDICAD + GD MRRG+SGGQKKRLTTGE++VGP RALFMDEIS GLDSSTT
Sbjct: 323 DYVLKILGLDICADILAGDVMRRGISGGQKKRLTTGEMLVGPARALFMDEISTGLDSSTT 382
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQI F++ LVHI+D T +ISLLQPAPETF+LFDD++L++EG+IVY GPR + +FFE
Sbjct: 383 FQICKFMRQLVHISDVTMIISLLQPAPETFELFDDIILLSEGQIVYQGPRDNVLEFFEYF 442
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GF+CPERKGVADFLQEV S+KDQEQYW++++ PY YVS+ F + F T H G KL E
Sbjct: 443 GFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEFR 502
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
++K++TH AL +KY ++ WEL KAC RE+LLMKRNSF+YVFK+ Q+ I++ ITMT
Sbjct: 503 VPYDKAKTHSAALVTQKYGISNWELFKACFDREWLLMKRNSFVYVFKTVQITIMSLITMT 562
Query: 361 AFLRSQLAVDVLH-ANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWA 419
+LR+++ V + + GA+F++L+ ++ NG EL T RL VFYKQRD FYP WA
Sbjct: 563 VYLRTEMHVGTVRDGQKFYGAMFFSLINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWA 622
Query: 420 YAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIAS 479
+A+PA +LK+PLSL+ES +W LTYY IG++P RFFRQ L F V+ ++SLFR + +
Sbjct: 623 FALPAWLLKIPLSLIESGIWIGLTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGA 682
Query: 480 LFRTVAVSLMIGTMAXXXXXXXXXXXXPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAP 539
+ RT +S IGT K + W+ W +++ P+ YG+ + +NEFL
Sbjct: 683 IGRTEVISNSIGTFTLLIVFTLGGFIIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLDE 742
Query: 540 RWEKI---TSGNT-TVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKS 595
RW T N TVG L+SRG + ++WI I AL+GF++LFN+ + LAL +L
Sbjct: 743 RWSSPNYDTRINAKTVGEVLLKSRGFFTEPYWFWICIVALLGFSLLFNLFYILALMYLNP 802
Query: 596 PGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFE 655
G S+ + E K + + G+ GS ++ + GPKRG MVLPF+PL+L F
Sbjct: 803 LGNSKATVVEEGKDKQKGENRGTEGSV-----VELNSSSNKGPKRG-MVLPFQPLSLAFN 856
Query: 656 DVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT 715
+V YYVD PS MK +G +LQLL D+ G FRPGILTAL+GVSGAGKTTLMDVL+GRKT
Sbjct: 857 NVNYYVDMPSEMKAQGVEGDRLQLLRDVGGAFRPGILTALVGVSGAGKTTLMDVLAGRKT 916
Query: 716 XXXXXXXXXXXXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTK 775
YPK Q TFAR+SGYCEQNDIHSP++TV ES+I+SAWLRLS +ID+KT+
Sbjct: 917 GGYIEGSISISGYPKNQTTFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSTDIDIKTR 976
Query: 776 AEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
FV EV++ +EL ++ S+VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD
Sbjct: 977 ELFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1036
Query: 836 ARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCK 895
ARAAAIVMR V+N V+TGRTVVCTIHQPSIDIFE+FD+L+LMK GG++IY+G LG HS K
Sbjct: 1037 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGSLGHHSQK 1096
Query: 896 VIDYFESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQL 955
+++YFE++ GV KI D YNPATWML+V++ S+E+++ +DF QI+ S+L++ N+EL K L
Sbjct: 1097 LVEYFEAVEGVPKINDGYNPATWMLDVTTPSMESQMSLDFAQIFSNSSLYRRNQELIKDL 1156
Query: 956 SSPSPGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILF 1015
S+P PGSKD++F T + Q+ Q KAC WKQ SYWR+P YN R + T + +L+G++F
Sbjct: 1157 STPPPGSKDVYFKTKYAQSFSTQTKACFWKQYWSYWRHPQYNAIRFLMTVVIGVLFGLIF 1216
Query: 1016 WQQGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAY 1075
WQ G K + +Q++ N FGAMY+A +F G N ++V P +A ERTV YRE+ AGMYS Y
Sbjct: 1217 WQIGTKTENEQDLNNFFGAMYAAVLFLGALNAATVQPAIAIERTVFYREKAAGMYSAIPY 1276
Query: 1076 SFAQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSL 1135
+ +QV VE+ Y IQ +Y +I Y MIG W+ K W + + +YF GM++++L
Sbjct: 1277 AISQVAVEIMYNTIQTGVYTLILYSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMAL 1336
Query: 1136 TPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIE 1195
TPN Q+A I S S+ NLF G+ I + QIP WW W Y+ P +W L G+++SQ GD +
Sbjct: 1337 TPNYQIAGICMSFFLSLWNLFSGFLIPRPQIPIWWRWYYWATPVAWTLYGLITSQVGDKD 1396
Query: 1196 K--EISAFGETKTVSGFLDDYFGFNHDXXXXXXXXXXXXXXXXASLFAYFIGKLNFQRR 1252
IS G+ + L + FGF HD +FAY I LNFQRR
Sbjct: 1397 SMVHISGIGDID-LKTLLKEGFGFEHDFLPVVAVVHIAWILLFLFVFAYGIKFLNFQRR 1454
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3513 (1241.7 bits), Expect = 0., P = 0.
Identities = 660/1257 (52%), Positives = 898/1257 (71%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG P GKTTLL AL+GKL SLKV+G V+YNG+ L+EFVPQKTSAYISQ D+H+
Sbjct: 175 MTLLLGPPSSGKTTLLLALAGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVG 234
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
MTV+ET+DFSARCQG G R D + E+++ EK AGI P+P+VD +MK+I+ ++ +L T
Sbjct: 235 VMTVQETLDFSARCQGVGTRYDLLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLIT 294
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DY L+ILGLDIC DT+VGD M RG+SGGQKKR+TTGE+IVGPT+ LFMDEIS GLDSSTT
Sbjct: 295 DYTLRILGLDICKDTVVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 354
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
+QIV L+ +V TDAT L+SLLQPAPETF+LFDD++L++EG+IVY GPR ++ FFE C
Sbjct: 355 YQIVKCLQEIVRFTDATVLMSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETC 414
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GF+CP+RKG ADFLQEV SRKDQEQYW PY Y+S+ +F +F+T H+G LE++L+
Sbjct: 415 GFKCPDRKGTADFLQEVTSRKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLS 474
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
+++ ++H +L FKK+S+ K +L K C RE LLMKRN+F Y+ K+ Q++I+A I T
Sbjct: 475 VPYDRFKSHPASLVFKKHSVPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIAST 534
Query: 361 AFLRSQLAVDVLHANA-YLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWA 419
+LR+++ A Y+GAL +++++ + NGF EL + RL VFYKQRDL F+P W
Sbjct: 535 VYLRTEMGTKNESDGAVYIGALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWT 594
Query: 420 YAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIAS 479
+++P +L +P+S+ ES VW ++TYY+IG++PE+ RF + L++F + +FR IA+
Sbjct: 595 FSLPTFLLGIPISIFESVVWVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAA 654
Query: 480 LFRTVAVSLMIGTMAXXXXXXXXXXXXPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAP 539
R++ ++ G + P+ +P W KW +WV P+ Y LTVNE LAP
Sbjct: 655 TCRSMILANTGGALVILLLFLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAP 714
Query: 540 RW--EKITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPG 597
RW + + +T++G LE + D ++YWI + ++GFTVLFN++ TLALTFL
Sbjct: 715 RWINQPSSDNSTSLGLAVLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLE 774
Query: 598 KSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDV 657
K + +++ E ++ +GS K ID KRG MVLPF PLT++F++V
Sbjct: 775 KQQAVVSKEN----TEENRAENGSK--SKSIDV--------KRG-MVLPFTPLTMSFDNV 819
Query: 658 QYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXX 717
YYVD P MK++G ++ KLQLL ++TG FRPG+LTALMGVSGAGKTTLMDVL+GRKT
Sbjct: 820 NYYVDMPKEMKEQGVSKDKLQLLKEVTGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG 879
Query: 718 XXXXXXXXXXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAE 777
+PK Q TFARISGYCEQNDIHSP +TV+ES+I+SA+LRL E+ K
Sbjct: 880 YIEGDIRISGFPKRQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLPKEVTKYEKMR 939
Query: 778 FVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837
FV+EV++ +EL+ +K ++VGLPG++GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR
Sbjct: 940 FVDEVMELVELESLKDAVVGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 999
Query: 838 AAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVI 897
AAAIVMR V+N V+TGRTVVCTIHQPSIDIFEAFD+L+L+K GG++IY+GPLGQ+S K+I
Sbjct: 1000 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYAGPLGQNSHKII 1059
Query: 898 DYFESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSS 957
+YF++I GV KIK+ YNPATWMLEVSS + E +L +DF + Y+ S+L+Q+NK L K+LS+
Sbjct: 1060 EYFQAIHGVPKIKEKYNPATWMLEVSSMAAEAKLEIDFAEHYKTSSLYQQNKNLVKELST 1119
Query: 958 PSPGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQ 1017
P G+ DL+F T F Q+ QFK+CLWKQ ++YWR P YNL R FT A +++ G +FW+
Sbjct: 1120 PPQGASDLYFSTRFSQSLLGQFKSCLWKQWITYWRTPDYNLARFFFTLAAAVMLGSIFWK 1179
Query: 1018 QGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSF 1077
G K + ++ + GAMY+A +F G+NN SSV PL+A ER+V YRER A MYS Y+
Sbjct: 1180 VGTKRENANDLTKVIGAMYAAVLFVGVNNSSSVQPLIAVERSVFYRERAAEMYSALPYAL 1239
Query: 1078 AQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTP 1137
AQV+ E+PY+ IQ Y +I Y M+ + W+ K FW +F + LYF Y GM+ V+LTP
Sbjct: 1240 AQVVCEIPYVLIQTTYYTLIIYAMMCFEWTLAKFFWFYFVSFMSFLYFTYYGMMTVALTP 1299
Query: 1138 NVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKE 1197
N Q+A++ A + Y + NLF G+ I + +IPKWWIW Y++CP +W + G++ SQYGD+E
Sbjct: 1300 NQQVAAVFAGAFYGLFNLFSGFVIPRPRIPKWWIWYYWICPVAWTVYGLIVSQYGDVEDT 1359
Query: 1198 ISAFGETK--TVSGFLDDYFGFNHDXXXXXXXXXXXXXXXXASLFAYFIGKLNFQRR 1252
I G T+ ++++++G++ D A +FA+ I LNFQ+R
Sbjct: 1360 IKVPGMANDPTIKWYIENHYGYDADFMIPIATVLVGFTLFFAFMFAFGIRTLNFQQR 1416
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3479 (1229.7 bits), Expect = 0., P = 0.
Identities = 674/1260 (53%), Positives = 881/1260 (69%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG P GKTTLL AL+GKL +L++SG ++Y G+ EFVPQKT AYISQ+DLH
Sbjct: 201 MTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFG 260
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMTVRE++DFS RC G G R + E+ + E+ AGI PDP++DA+MK+I++ G E +L T
Sbjct: 261 EMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKPDPEIDAFMKSIAISGQETSLVT 320
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DY+LK+LGLDICADT+VGD MRRG+SGGQ+KRLTTGE++VGP ALFMDEIS GLDSSTT
Sbjct: 321 DYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTT 380
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
FQI F++ LVHI D T +ISLLQPAPETF+LFDD++L++EG+IVY G R + +FFE
Sbjct: 381 FQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEFFEYM 440
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GF+CPERKG+ADFLQEV S+KDQEQYW+R++HPY YVS+ F + F + H G +L E
Sbjct: 441 GFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFR 500
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
++K++TH AL +KY ++ +L KAC RE+LLMKRNSF+YVFK+ Q+ I++ I MT
Sbjct: 501 VPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMT 560
Query: 361 AFLRSQLAVDVLH-ANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWA 419
+ R+++ V + + GALF++L+ L+ NG EL T RL VF+KQRD FYP WA
Sbjct: 561 VYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWA 620
Query: 420 YAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIAS 479
+A+P +LK+PLSL+ES +W +LTYY IG++P RFFRQ L F V+ ++SLFR + +
Sbjct: 621 FALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGA 680
Query: 480 LFRTVAVSLMIGTMAXXXXXXXXXXXXPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAP 539
L RT ++ GT+A K +PSWL W ++ P+ YG+ L +NEFL
Sbjct: 681 LGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDE 740
Query: 540 RW---EKITSGNT-TVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKS 595
RW T N TVG L+SRG + ++WI I AL+GFTVLFN + +AL +L
Sbjct: 741 RWGSPNNDTRINAKTVGEVLLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALMYLNP 800
Query: 596 PGKSR-TIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTF 654
G S+ T + E K + G+ GS ++ ++ GPK+G MVLPF+PL+L F
Sbjct: 801 LGNSKATTVVEEGKDKHKGSHSGTGGSV-----VELTSTSSHGPKKG-MVLPFQPLSLAF 854
Query: 655 EDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK 714
+V YYVD P+ MK +G +LQLL D+ G FRPG+LTAL+GVSGAGKTTLMDVL+GRK
Sbjct: 855 NNVNYYVDMPAEMKAQGVEGDRLQLLRDVGGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 914
Query: 715 TXXXXXXXXXXXXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKT 774
T YPK Q TFAR+SGYCEQNDIHSP++TV ES+I+SAWLRLS +ID KT
Sbjct: 915 TGGYVEGSINISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSADIDTKT 974
Query: 775 KAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834
+ FV EV++ +EL ++ S+VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 975 REMFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1034
Query: 835 DARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSC 894
DARAAAIVMR V+N V+TGRTVVCTIHQPSIDIFE+FD+L+LMK GG++IY+G LG HS
Sbjct: 1035 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQ 1094
Query: 895 KVIDYFESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQ 954
K+++YFE+I GV KIKD YNPATWML+V++ S+E+++ VDF QI+ S++++ N+EL K+
Sbjct: 1095 KLVEYFEAIEGVPKIKDGYNPATWMLDVTTPSMESQMSVDFAQIFVNSSVNRRNQELIKE 1154
Query: 955 LSSPSPGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGIL 1014
LS+P PGS DL+F T + Q Q KAC WK S WR P YN R + T + +L+G+L
Sbjct: 1155 LSTPPPGSNDLYFRTKYAQPFSTQTKACFWKMYWSNWRYPQYNAIRFLMTVVIGVLFGLL 1214
Query: 1015 FWQQGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWA 1074
FWQ G KI+ +Q++ N FGAMY+A +F G N ++V P VA ERTV YRE+ AGMYS
Sbjct: 1215 FWQTGTKIEKEQDLNNFFGAMYAAVLFLGATNAATVQPAVAIERTVFYREKAAGMYSAIP 1274
Query: 1075 YSFAQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVS 1134
Y+ +QV VE+ Y IQ +Y +I Y MIGY W+ K FW + +YF GM++V+
Sbjct: 1275 YAISQVAVEIMYNTIQTGVYTLILYSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVA 1334
Query: 1135 LTPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDI 1194
LTPN Q+A I S S NLF G+ I + QIP WW W Y+ P +W L G+++SQ GD
Sbjct: 1335 LTPNYQIAGICLSFFLSFWNLFSGFLIPRPQIPIWWRWYYWASPVAWTLYGIITSQVGDR 1394
Query: 1195 EK--EISAFGETKTVSGFLDDYFGFNHDXXXXXXXXXXXXXXXXASLFAYFIGKLNFQRR 1252
+ I+ G+ ++ L + FGF++D FAY I LNFQRR
Sbjct: 1395 DSIVHITGVGDM-SLKTLLKNGFGFDYDFLPVVAVVHIAWILIFLFAFAYGIKFLNFQRR 1453
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3458 (1222.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 661/1254 (52%), Positives = 888/1254 (70%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
M LLLG P GKTTLL AL+GKL LK +G V+YNG+ ++EFVPQ+T+AYI Q D+HI
Sbjct: 182 MALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIG 241
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMTVRET ++AR QG G R D + E+ + EK A I PDPD+D +MKA+S G + N+ T
Sbjct: 242 EMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMT 301
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DYILKILGL++CADT+VGD M RG+SGGQKKR+TTGE++VGP+RALFMDEIS GLDSSTT
Sbjct: 302 DYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTT 361
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
+QIV+ L++ VHI + TALISLLQPAPETF+LFDD++L+AEG+I+Y GPR ++ +FFE
Sbjct: 362 YQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETM 421
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GF+CP RKGVADFLQEV S+KDQ QYW R+D PY ++ + +F F++ H+G ++ +ELA
Sbjct: 422 GFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELA 481
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
F+K+++H AL+ KKY + EL+K +RE+LLMKRNSF+Y FK QL+++A +TMT
Sbjct: 482 LPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMT 541
Query: 361 AFLRSQLAVDV-LHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWA 419
F R+++ + + Y GALF+ LM+L+ NG EL+MT ++L VFYKQRDL FYPAW
Sbjct: 542 LFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWV 601
Query: 420 YAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIAS 479
Y++P +LK+P+S +E+ + T +TYYVIG+ P VGR F+Q++LL ++ + +LF+ +A+
Sbjct: 602 YSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAA 661
Query: 480 LFRTVAVSLMIGTMAXXXXXXXXXXXXPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAP 539
L R + V+ G A + + W WG+W+ P+ YG+ + NEF
Sbjct: 662 LGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGH 721
Query: 540 RWEK-ITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGK 598
W + + + + T+G L+SRG + +YWI AL+GF VLFN FTLALTFL S GK
Sbjct: 722 SWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGK 781
Query: 599 SRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQ 658
+ +IA E S D+ + S R + ++A A KRG MVLPFEP ++TF++V
Sbjct: 782 PQAVIAEEPAS---DETELQSA--RSEGVVEAG----ANKKRG-MVLPFEPHSITFDNVV 831
Query: 659 YYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXX 718
Y VD P M ++G + +L LL + G FRPG+LTALMGVSGAGKTTLMDVL+GRKT
Sbjct: 832 YSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 891
Query: 719 XXXXXXXXXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEF 778
YPK Q TFARISGYCEQ DIHSP++TV ES+++SAWLRL E+D + F
Sbjct: 892 IDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIF 951
Query: 779 VNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 838
+ EV++ +EL ++ +LVGLPG SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA
Sbjct: 952 IEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1011
Query: 839 AAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVID 898
AAIVMR V+N V+TGRTVVCTIHQPSIDIFEAFD+L L+K GG IY GPLG S +I+
Sbjct: 1012 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLIN 1071
Query: 899 YFESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSP 958
YFESI G+ KI + YNPATWMLEVS++S E LGVDF Q+Y+ S L++ NKEL K+LS P
Sbjct: 1072 YFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQP 1131
Query: 959 SPGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQ 1018
+PGSKDL+FPT + Q+ Q A LWKQ+ SYWRNP Y R +FT ++L++G +FW
Sbjct: 1132 APGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDL 1191
Query: 1019 GKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFA 1078
G K KT+Q++ N G+MY+A +F G+ N +SV P+V ERTV YRE+ AGMYS Y+FA
Sbjct: 1192 GGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFA 1251
Query: 1079 QVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPN 1138
QV +E+PY+ +QA++Y +I Y MIG+ W+A K FW L + + L F + GM+ V++TPN
Sbjct: 1252 QVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPN 1311
Query: 1139 VQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEI 1198
+AS+++S+ Y + NLF G+ I + +P WW W Y+LCP +W L G+++SQ+GDI + +
Sbjct: 1312 HHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPM 1371
Query: 1199 SAFGETKTVSGFLDDYFGFNHDXXXXXXXXXXXXXXXXASLFAYFIGKLNFQRR 1252
+ +V F+ +++G+ A +FA I NFQ+R
Sbjct: 1372 A--DSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3351 (1184.7 bits), Expect = 0., P = 0.
Identities = 642/1260 (50%), Positives = 870/1260 (69%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
+TLLLG P GKTTLL AL+G+L +L+ SG+++YNGY L E + +TSAY+SQ D H+A
Sbjct: 163 LTLLLGPPSSGKTTLLLALAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVA 222
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
EMTVR+T++F+ RCQG G + D + E+ + EKLAGI PD D+D +MK++++ G+E +L
Sbjct: 223 EMTVRQTLEFAGRCQGVGFKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVV 282
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
+Y++KILGLD CADT+VGD M +G+SGGQKKRLTTGEL+VGP R LFMDEISNGLDSSTT
Sbjct: 283 EYVMKILGLDTCADTLVGDEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT 342
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
QI+ +++H H + T +ISLLQP+PET++LFDDV+LM+EG+I+Y GPR + FF
Sbjct: 343 HQIIMYMRHSTHALEGTTVISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSL 402
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GF CP+RK VADFLQEV S+KDQ+QYW PY YV +F F++ G KL ++L
Sbjct: 403 GFTCPDRKNVADFLQEVTSKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLE 462
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
F+K H ALS +Y + K ELLK + LMK+N+FIYVFK QL+++A ITMT
Sbjct: 463 VPFDKRFNHSAALSTSQYGVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMT 522
Query: 361 AFLRSQLAVDVLH-ANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWA 419
F R+ + + + N YLG+L+++++I++ NGF E+ M ++L V YK RDL FYP+WA
Sbjct: 523 VFCRTTMHHNTIDDGNIYLGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWA 582
Query: 420 YAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIAS 479
Y +P+ +L +P S++ES W ++TYY IGY P RF +QFLL F++H S+ LFR + S
Sbjct: 583 YTLPSWLLSIPTSIIESATWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGS 642
Query: 480 LFRTVAVSLMIGTMAXXXXXXXXXXXXPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAP 539
L R + V+ G+ A + S+PSW WG+W+ PL Y + +VNEFL
Sbjct: 643 LGRHMIVANTFGSFAMLVVMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGH 702
Query: 540 RWEKITSGNTT---VGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSP 596
W+K T+GN T +G L+ R L + +YWI +AAL+G+TVLFN++FTL L L
Sbjct: 703 NWQK-TAGNHTSDSLGLALLKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPW 761
Query: 597 GKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHID--APLKTTAGPKRGKMVLPFEPLTLTF 654
GK + +++ E+ + + ++ G ++++ + RG MVLPF+PL+L+F
Sbjct: 762 GKFQAVVSREELDEREKKRKGDEFVVELREYLQHSGSIHGKYFKNRG-MVLPFQPLSLSF 820
Query: 655 EDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK 714
++ YYVD P +K++G + +LQLL +ITG FRPG+LTAL+GVSGAGKTTLMDVL+GRK
Sbjct: 821 SNINYYVDVPLGLKEQGILEDRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 880
Query: 715 TXXXXXXXXXXXXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKT 774
T +PK Q TFARISGYCEQND+HSP +TV ES++FSA LRL +ID +T
Sbjct: 881 TGGTIEGDVYISGFPKRQETFARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSET 940
Query: 775 KAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834
+ FV+EV++ +EL + +LVGLPGV GLSTEQRKRLTIAVELVANPSI+FMDEPTSGL
Sbjct: 941 QRAFVHEVMELVELTSLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 1000
Query: 835 DARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSC 894
DARAAAIVMR V+N+V TGRT+VCTIHQPSIDIFE+FD+L+ MK GG +IY+GPLGQ SC
Sbjct: 1001 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSC 1060
Query: 895 KVIDYFESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQ 954
++I YFESI GV KIK +NPA WML+V++S+ E LGVDF +IYR S L Q NKEL +
Sbjct: 1061 ELIKYFESIEGVQKIKPGHNPAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIEV 1120
Query: 955 LSSPSPGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGIL 1014
LS PS +K++ FPT + Q+ + QF ACLWKQNLSYWRNP Y R +T +SL+ G +
Sbjct: 1121 LSKPSNIAKEIEFPTRYSQSLYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGTI 1180
Query: 1015 FWQQGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWA 1074
W+ G K TQQ++FN G+MY+A +F GI N ++ P+V+ ER V YRER AGMYS
Sbjct: 1181 CWKFGSKRDTQQQLFNAMGSMYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMYSALP 1240
Query: 1075 YSFAQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVS 1134
++FAQV +E PY+ Q+ IY I Y M + WSA K W L + +++YF + GM+ +
Sbjct: 1241 FAFAQVFIEFPYVLAQSTIYSTIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTTA 1300
Query: 1135 LTPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDI 1194
+TPN +ASI+A+ Y + NLF G+ I ++IP WW W Y+ P +W L G+L SQYGD
Sbjct: 1301 ITPNHNVASIIAAPFYMLWNLFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGDD 1360
Query: 1195 EKEIS-AFGETKT-VSGFLDDYFGFNHDXXXXXXXXXXXXXXXXASLFAYFIGKLNFQRR 1252
E+ + + G + V L+D G+ HD + +FA+ I NFQRR
Sbjct: 1361 ERSVKLSDGIHQVMVKQLLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3237 (1144.5 bits), Expect = 0., P = 0.
Identities = 633/1255 (50%), Positives = 846/1255 (67%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG PG GK+TLL AL+GKL SLK +G ++YNG L++F ++TSAYISQ D HIA
Sbjct: 188 MTLLLGPPGSGKSTLLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIA 247
Query: 61 EMTVRETIDFSARCQGTGHR-ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQ 119
E+TVRET+DF+ARCQG A MK++ +LEK GI P ++DA+MKA SV+G + ++
Sbjct: 248 ELTVRETLDFAARCQGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVS 307
Query: 120 TDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSST 179
TDY+LK+LGLD+C+DT+VG+ M RGVSGGQ+KR+TTGE+ VGP + LFMDEIS GLDSST
Sbjct: 308 TDYVLKVLGLDVCSDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSST 367
Query: 180 TFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFED 239
TFQIV +++ VH+ DAT L++LLQPAPETFDLFDD++L++EG +VY GPR + FFE
Sbjct: 368 TFQIVKCIRNFVHLMDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFES 427
Query: 240 CGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEEL 299
GFR P RKGVADFLQEV S+KDQ QYW PY ++ + F+ S G + +L
Sbjct: 428 LGFRLPPRKGVADFLQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKL 487
Query: 300 AHSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITM 359
A F+K AL K++++ WE LK C RE LL+KR+ F+Y F++ Q+ + +T
Sbjct: 488 AAPFDKKSADPSALCRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTA 547
Query: 360 TAFLRSQL-AVDVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAW 418
T FL+++L N YL LF+ L+ ++ NGF EL + SRL VFYKQRD F+PAW
Sbjct: 548 TVFLKTRLHPTSEQFGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAW 607
Query: 419 AYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIA 478
+++I + +L+VP S+LE+ VW+ + Y+ +G +P GRFFR LLLF+VH ++ LFR +A
Sbjct: 608 SWSIASWLLRVPYSVLEAVVWSGVVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMA 667
Query: 479 SLFRTVAVSLMIGTMAXXXXXXXXXXXXPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLA 538
SL R + ++ G+ A PK + W WGFWV PL+YG+ + VNEF A
Sbjct: 668 SLARDMVIANTFGSAAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTA 727
Query: 539 PRWEKITS-GNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPG 597
RW ++ +TT+G L+ R + +YWI IA LIG+ +LFN V TLAL +L
Sbjct: 728 TRWMTPSAISDTTIGLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLR 787
Query: 598 KSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDV 657
K+R ++ L D + ++ + A K+G M+LPF+PLT+TF +V
Sbjct: 788 KARAVV-------LDDPNEETA--------LVADANQVISEKKG-MILPFKPLTMTFHNV 831
Query: 658 QYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXX 717
YYVD P M+ +G + +LQLLS+++G F PG+LTAL+G SGAGKTTLMDVL+GRKT
Sbjct: 832 NYYVDMPKEMRSQGVPETRLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG 891
Query: 718 XXXXXXXXXXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAE 777
+PK Q TFARISGY EQNDIHSP +TVEES+ FSA LRL EI + K E
Sbjct: 892 YTEGDIRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESLWFSASLRLPKEITKEQKKE 951
Query: 778 FVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837
FV +V++ +ELD ++Y+LVGLPG +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR
Sbjct: 952 FVEQVMRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1011
Query: 838 AAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVI 897
AAAIVMR V+N V+TGRTVVCTIHQPSIDIFEAFD+L+LMK GG++IY G LG HS ++
Sbjct: 1012 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYGGKLGTHSQVLV 1071
Query: 898 DYFESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSS 957
DYF+ I GV I YNPATWMLEV++ ++E + ++F +Y++S +E + KQLS
Sbjct: 1072 DYFQGINGVPPISSGYNPATWMLEVTTPALEEKYNMEFADLYKKSDQFREVEANIKQLSV 1131
Query: 958 PSPGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQ 1017
P GS+ + F + + QN QF CLWKQNL YWR+P YNL R+VFT + + G +FW
Sbjct: 1132 PPEGSEPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPEYNLVRLVFTTIAAFILGTVFWD 1191
Query: 1018 QGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSF 1077
G K + Q++ + GA+YSA +F G++N SSV P+V+ ERTV YRE+ AGMY+P Y+
Sbjct: 1192 IGSKRTSSQDLITVMGALYSACLFLGVSNASSVQPIVSIERTVFYREKAAGMYAPIPYAA 1251
Query: 1078 AQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTP 1137
AQ LVE+PY+ Q ++Y +ITY IG+ + K L F YF + GM+ V LTP
Sbjct: 1252 AQGLVEIPYILTQTILYGVITYFTIGFERTFSKFVLYLVFMFLTFTYFTFYGMMAVGLTP 1311
Query: 1138 NVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKE 1197
N LA++++S+ YS+ NL G+ + K IP WWIW YY+CP +W L G++ SQ GD+E
Sbjct: 1312 NQHLAAVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICPVAWTLQGVILSQLGDVESM 1371
Query: 1198 ISAFGETKTVSGFLDDYFGFNHDXXXXXXXXXXXXXXXXASLFAYFIGKLNFQRR 1252
I+ TV F++ YFG+ + S FA + LNFQRR
Sbjct: 1372 INEPLFHGTVKEFIEYYFGYKPNMIGVSAAVLVGFCALFFSAFALSVKYLNFQRR 1426
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2442 (864.7 bits), Expect = 1.2e-253, P = 1.2e-253
Identities = 472/898 (52%), Positives = 613/898 (68%)
Query: 374 ANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSL 433
AN Y+GAL + ++I + NGF E+ M SRL VFYKQRDL FYP+W +++P +L +P S+
Sbjct: 573 ANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSI 632
Query: 434 LESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASLFRTVAVSLMIGTM 493
LES W +TYY IG++P+ RFF+QFLL+F + + SLFR IAS+ RT+ ++ G +
Sbjct: 633 LESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGAL 692
Query: 494 AXXXXXXXXXXXXPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRW-EKITSGNTTV- 551
PK +P W W +WV PLTY GL VNE APRW K+ S N+T+
Sbjct: 693 TLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIK 752
Query: 552 -GRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSK 610
G L + + ++YWIS+ AL+ FT LFN++FTLALT+L GK ++ E+
Sbjct: 753 LGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEEENED 812
Query: 611 LQDQKDG-------SSGSDRDKKHI-----DAPLKTT--AGPKRGKMVLPFEPLTLTFED 656
KD + G+ R + + D+ + + AG K+G MVLPF PL ++F+D
Sbjct: 813 ADQGKDPMRRSLSTADGNRRGEVAMGRMSRDSAAEASGGAGNKKG-MVLPFTPLAMSFDD 871
Query: 657 VQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTX 716
V+Y+VD P M+ +G + +LQLL +TG FRPG+LTALMGVSGAGKTTLMDVL+GRKT
Sbjct: 872 VKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 931
Query: 717 XXXXXXXXXXXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKA 776
+PKVQ TFARISGYCEQ DIHSP +TV ES+IFSA+LRL E+ K
Sbjct: 932 GYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEKM 991
Query: 777 EFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 836
FV++V++ +ELD ++ S+VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA
Sbjct: 992 MFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051
Query: 837 RAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKV 896
RAAAIVMRAV+N V+TGRTVVCTIHQPSIDIFEAFD+L+LMK GG++IY+GPLGQ+S KV
Sbjct: 1052 RAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNSHKV 1111
Query: 897 IDYFESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLS 956
++YFES PGV KI + YNPATWMLE SS + E +L VDF ++Y +S LHQ NK L K+LS
Sbjct: 1112 VEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQRNKALVKELS 1171
Query: 957 SPSPGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFW 1016
P G+ DL+F T F QN W QFK+CLWKQ +YWR+P YNL R +FT A SLL G +FW
Sbjct: 1172 VPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLLIGTVFW 1231
Query: 1017 QQGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYS 1076
Q G ++ + GA+Y+A IF GINNCS+V P+VA ERTV YRER AGMYS Y+
Sbjct: 1232 QIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFYRERAAGMYSAMPYA 1291
Query: 1077 FAQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLT 1136
+QV E+PY+ IQ V Y +I Y M+G+ W A K FW + ++ + LY+ Y GM+ VSLT
Sbjct: 1292 ISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFLYWTYYGMMTVSLT 1351
Query: 1137 PNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEK 1196
PN Q+ASI AS+ Y + NLF G+ I + +IPKWWIW Y++CP +W + G++ SQYGD+E
Sbjct: 1352 PNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDVET 1411
Query: 1197 EISAFGETK--TVSGFLDDYFGFNHDXXXXXXXXXXXXXXXXASLFAYFIGKLNFQRR 1252
I G TV +++D++GF D A +FA+ I LNFQ R
Sbjct: 1412 RIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5404 | 1.0 | 0.8569 | N/A | no |
| Q5Z9S8 | PDR12_ORYSJ | No assigned EC number | 0.5526 | 0.9992 | 0.834 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.5626 | 0.9968 | 0.8660 | N/A | no |
| Q9LFH0 | AB37G_ARATH | No assigned EC number | 0.6669 | 0.9976 | 0.8613 | yes | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.5542 | 0.9936 | 0.8675 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.5487 | 0.9864 | 0.8600 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.5522 | 0.9944 | 0.8544 | N/A | no |
| Q7FMW4 | PDR15_ORYSJ | No assigned EC number | 0.5507 | 0.9960 | 0.8263 | yes | no |
| Q8GU89 | PDR4_ORYSJ | No assigned EC number | 0.5540 | 0.9984 | 0.8620 | yes | no |
| Q9NGP5 | ABCG2_DICDI | No assigned EC number | 0.3153 | 0.8929 | 0.8418 | yes | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.6924 | 0.9944 | 0.8604 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1252 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-97 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-95 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-74 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-72 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-58 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 7e-55 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-53 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-52 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 1e-50 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 7e-45 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 8e-45 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 6e-38 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 6e-38 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 5e-37 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-34 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 7e-31 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-30 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-29 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-26 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-25 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 6e-25 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-24 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-23 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-23 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-23 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 9e-23 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-22 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-22 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-22 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-22 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-22 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 5e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 7e-22 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-21 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-20 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-20 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-20 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 7e-20 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 8e-20 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-19 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-19 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-19 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-19 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 8e-19 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-18 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-18 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-18 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-18 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-18 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 5e-18 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-17 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-17 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 7e-17 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 7e-17 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 8e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 9e-17 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-16 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-16 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-16 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-16 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 5e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 5e-16 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 7e-16 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 9e-16 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-15 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-15 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-15 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-15 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-15 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 4e-15 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 5e-15 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-15 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 5e-15 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-15 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 7e-15 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-15 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 9e-15 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-14 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-14 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-14 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-14 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-14 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-14 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-14 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 5e-14 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 6e-14 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 7e-14 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 9e-14 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 9e-14 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 9e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 9e-14 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-13 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-13 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-13 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-13 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-13 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-13 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-13 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-13 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-13 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-13 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 4e-13 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 6e-13 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 7e-13 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-12 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-12 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-12 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-12 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-12 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-12 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-12 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-12 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-12 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-12 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-12 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-12 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-12 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-12 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-12 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 4e-12 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-12 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 7e-12 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 8e-12 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 9e-12 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 9e-12 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-11 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-11 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-11 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-11 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-11 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-11 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-11 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-11 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-11 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-11 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-11 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-11 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-11 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 5e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-11 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 6e-11 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 7e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-10 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-10 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-10 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-10 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-10 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-10 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-10 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-10 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 5e-10 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-10 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 6e-10 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 8e-10 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 8e-10 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 9e-10 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-09 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-09 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-09 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-09 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-09 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-09 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-09 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-09 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-09 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-09 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-09 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-09 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-09 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-09 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-09 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-09 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-09 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 5e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-09 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 6e-09 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 7e-09 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 7e-09 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 7e-09 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 7e-09 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 7e-09 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 8e-09 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 9e-09 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 1e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-08 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-08 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-08 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-08 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-08 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-08 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-08 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-08 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-08 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-08 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 6e-08 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 7e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-08 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 7e-08 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 7e-08 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 8e-08 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 9e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 9e-08 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-07 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-07 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-07 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-07 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-07 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-07 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-07 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-07 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-07 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-07 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-07 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 3e-07 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-07 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-07 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-07 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 5e-07 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 5e-07 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-07 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-07 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 6e-07 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 6e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 6e-07 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 7e-07 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-07 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 8e-07 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 8e-07 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 8e-07 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 8e-07 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 8e-07 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-06 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-06 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-06 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-06 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-06 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-06 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-06 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-06 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-06 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-06 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-06 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-06 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-06 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-06 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-06 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-06 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-06 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-06 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-06 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 5e-06 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 6e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 6e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 6e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 7e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 7e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 7e-06 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 8e-06 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 8e-06 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 8e-06 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 8e-06 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 8e-06 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 9e-06 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 9e-06 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-05 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-05 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-05 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-05 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-05 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-05 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-05 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-05 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-05 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-05 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-05 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-05 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-05 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-05 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-05 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-05 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-05 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-05 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 4e-05 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 5e-05 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 7e-05 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 7e-05 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 8e-05 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 8e-05 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 9e-05 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 9e-05 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 9e-05 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-04 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-04 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-04 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-04 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-04 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-04 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-04 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-04 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-04 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 4e-04 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 4e-04 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-04 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-04 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-04 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 5e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-04 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 5e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-04 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 6e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 6e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-04 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 6e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 6e-04 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 7e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 7e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 7e-04 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 7e-04 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 8e-04 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 8e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 8e-04 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 8e-04 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 0.001 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 0.001 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.001 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 0.001 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 0.001 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 0.002 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 0.002 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 0.002 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 0.002 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 0.002 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.002 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.002 | |
| TIGR01247 | 236 | TIGR01247, drrB, daunorubicin resistance ABC trans | 0.002 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.002 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 0.002 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 0.003 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 0.003 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 0.003 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 0.003 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 0.003 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 0.003 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.003 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 0.003 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.003 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 0.004 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 0.004 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 0.004 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 0.004 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.004 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 0.004 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 0.004 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.004 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 0.004 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1735 bits (4494), Expect = 0.0
Identities = 724/1279 (56%), Positives = 955/1279 (74%), Gaps = 28/1279 (2%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
MTLLLG P GKTTLL AL+GKL SLKVSGE++YNGYRL+EFVP+KTSAYISQ D+H+
Sbjct: 193 MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVG 252
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
MTV+ET+DFSARCQG G R D + E+ + EK AGIFP+ +VD +MKA ++EG++ +L T
Sbjct: 253 VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLIT 312
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DY LKILGLDIC DTIVGD M RG+SGGQKKR+TTGE+IVGPT+ LFMDEIS GLDSSTT
Sbjct: 313 DYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 372
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
+QIV L+ +VH+T+AT L+SLLQPAPETFDLFDD++L++EG+IVY GPR +I +FFE C
Sbjct: 373 YQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESC 432
Query: 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELA 300
GF+CPERKG ADFLQEV S+KDQEQYW ++ PY Y+S+ +F +FK+ H+G++LE EL+
Sbjct: 433 GFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELS 492
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
F+KS++HK AL F KYS+ K ELLKAC +E+LLMKRN+F+YVFK+ Q++I+A+I T
Sbjct: 493 VPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIAST 552
Query: 361 AFLRSQLAV-DVLHANAYLGALFYALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWA 419
FLR+++ + Y+GAL ++++I + NGF EL + RL VFYKQRDL F+P W
Sbjct: 553 VFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWT 612
Query: 420 YAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIAS 479
+ +P +L +P+S++ES VW +TYY IG++PE RFF+Q LL+F + + +FR IAS
Sbjct: 613 FTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIAS 672
Query: 480 LFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAP 539
+ RT+ ++ G + +L++ L GGFI+PK +P+W +W +WV PL+YG L VNE AP
Sbjct: 673 VCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAP 732
Query: 540 RW-EKITSGNTT-VGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPG 597
RW K+ S N+T +G L + D ++YWI + AL+GFT+LFNV+FTLALT+L G
Sbjct: 733 RWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLG 792
Query: 598 KSRTIIAYEKYSKLQDQKDG------------------SSGSDRDKKHIDAPLKTTA--- 636
K + II+ E +++ ++D S+ + + A
Sbjct: 793 KKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANG 852
Query: 637 -GPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTAL 695
PKRG MVLPF PL ++F+DV Y+VD P+ MK++G + +LQLL ++TG FRPG+LTAL
Sbjct: 853 VAPKRG-MVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTAL 911
Query: 696 MGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 755
MGVSGAGKTTLMDVL+GRKTGG IEGDIRI G+PK Q TFARISGYCEQNDIHSP +TV
Sbjct: 912 MGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971
Query: 756 ESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIA 815
ES+I+SA+LRL E+ + K FV+EV++ +ELD +K ++VGLPGV+GLSTEQRKRLTIA
Sbjct: 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIA 1031
Query: 816 VELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLI 875
VELVANPSIIFMDEPTSGLDARAAAIVMR V+N V+TGRTVVCTIHQPSIDIFEAFD+L+
Sbjct: 1032 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1091
Query: 876 LMKNGGRIIYSGPLGQHSCKVIDYFESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDF 935
LMK GG++IYSGPLG++S K+I+YFE+IPGV KIK+ YNPATWMLEVSS + E +LG+DF
Sbjct: 1092 LMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDF 1151
Query: 936 GQIYRESTLHQENKELGKQLSSPSPGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPS 995
+ Y+ S+L+Q NK L K+LS+P PG+ DL+F T + Q+ W QFK+CLWKQ +YWR+P
Sbjct: 1152 AEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPD 1211
Query: 996 YNLRRIVFTCAMSLLYGILFWQQGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVA 1055
YNL R FT A +L+ G +FW+ G K ++ + GAMY+A +F GINNCS+V P+VA
Sbjct: 1212 YNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVA 1271
Query: 1056 TERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSL 1115
ERTV YRER AGMYS Y+ AQV+ E+PY+ IQ Y +I Y M+ + W+A K FW
Sbjct: 1272 VERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFY 1331
Query: 1116 HGTFCNLLYFNYMGMLMVSLTPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYY 1175
+F + LYF Y GM+ VSLTPN Q+A+I A++ Y + NLF G+ I + +IPKWW+W Y+
Sbjct: 1332 FISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYW 1391
Query: 1176 LCPTSWVLNGMLSSQYGDIEKEISAFGETK--TVSGFLDDYFGFNHDLLGVVGIVLLIFP 1233
+CP +W + G++ SQYGD+E I G T+ ++ D++G++ D +G V VL+ F
Sbjct: 1392 ICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFT 1451
Query: 1234 IVFASLFAYFIGKLNFQRR 1252
+ FA +FA+ I LNFQ R
Sbjct: 1452 VFFAFIFAFCIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1054 bits (2728), Expect = 0.0
Identities = 377/1266 (29%), Positives = 610/1266 (48%), Gaps = 115/1266 (9%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLK-VSGEVSYNGYRLDEFVPQKT--SAYISQYDL 57
+T++LG PG G +TLL ++ V G ++Y+G +E Y ++ D+
Sbjct: 89 LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDV 148
Query: 58 HIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKN 117
H +TV ET+DF+ARC+ +R D + + Y K I
Sbjct: 149 HFPHLTVGETLDFAARCKTPQNRPDGVSR----------------EEYAKHI-------- 184
Query: 118 LQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDS 177
D + GL +T VG+ RGVSGG++KR++ E +G + D + GLDS
Sbjct: 185 --ADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242
Query: 178 STTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFF 237
+T + + LK +I D T L+++ Q + + ++LFD V+++ EG +Y GP ++F
Sbjct: 243 ATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYF 302
Query: 238 EDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEE 297
E GF+CP+R+ ADFL + S + Q + + +F T ++ S +L +
Sbjct: 303 EKMGFKCPDRQTTADFLTSLTSPA-ERQIKPGYEKKV-PRTPQEFETYWRNSPEYAQLMK 360
Query: 298 ELAHSFNKSETH---------------KKALSFKKYSLTKWELLKACATREFLLMKRNSF 342
E+ ++ K+ Y+++ +K C R FL MK N
Sbjct: 361 EIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPS 420
Query: 343 IYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTASR 402
+F +I+A I + F + + GALF+A++ + E+
Sbjct: 421 FTLFMVFGNIIMALILSSVFYNLPKNTSDFY--SRGGALFFAILFNAFSSLLEIASMYEA 478
Query: 403 LAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLL 462
+ K R Y A AI + I ++P ++ES V+ + Y+++ + GRFF L+
Sbjct: 479 RPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLI 538
Query: 463 LFTVHLTSISLFRAIASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVC 522
LF L LFR+I ++ +T++ ++ + +L L ++ GF IP+ SM W KW ++V
Sbjct: 539 LFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVN 598
Query: 523 PLTYGEIGLTVNEFLAPRWE---KITSG----NTTVGRQTLESRGL-------------- 561
PL Y L VNEF R+E + SG N V + G
Sbjct: 599 PLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLK 658
Query: 562 ---NFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGS 618
+ +S W + +IGFTV F V+ L F K + I+ + +
Sbjct: 659 LSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFRR----------- 707
Query: 619 SGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYYVDTPSA-------MKKRG 671
GS + K + VL LT +DV D +
Sbjct: 708 -GSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLT 766
Query: 672 FNQK----KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG 727
+ K K +L+++ G +PG LTALMG SGAGKTTL++VL+ R T G+I G R+
Sbjct: 767 YEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVN 826
Query: 728 YPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE 787
+ +F R GY +Q D+H P TV ES+ FSA+LR + K E+V EV++ +E
Sbjct: 827 GRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLE 886
Query: 788 LDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRAV 846
++ ++VG+PG GL+ EQRKRLTI VELVA P ++F+DEPTSGLD++ A + + +
Sbjct: 887 MESYADAVVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLM 945
Query: 847 KNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFESIPGV 906
+ + + G+ ++CTIHQPS +FE FD L+L++ GG+ +Y G LG++S +I+YFE G
Sbjct: 946 RKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE-KHGA 1004
Query: 907 LKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSPGSKDLH 966
K ++ NPA WMLEV ++ D+ +++R S+ +Q K +L + ++D +
Sbjct: 1005 PKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDN 1064
Query: 967 FPTH---FPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGKKIK 1023
P + + W QFK LW+ YWR P Y + T +L G F++ G
Sbjct: 1065 DPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVG---T 1121
Query: 1024 TQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQVLVE 1083
+ Q + N A++ A + F + P VA RER + +S A+ AQ+ VE
Sbjct: 1122 SLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVE 1181
Query: 1084 VPYLFIQAVIYVIITYPMIGYYWSAYK---------IFWSLHGTFCNLLYFNYMGMLMVS 1134
+PY + I+ I Y +G+YW+A K +FW L F LYF+ +G +++S
Sbjct: 1182 IPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMF--FLYFSTLGQMVIS 1239
Query: 1135 LTPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDI 1194
PN A++LAS ++M FCG ++P +WI+ Y P ++++ +LS+ D+
Sbjct: 1240 FNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADV 1299
Query: 1195 EKEISA 1200
Sbjct: 1300 PVTCKV 1305
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 309 bits (793), Expect = 1e-97
Identities = 110/239 (46%), Positives = 145/239 (60%), Gaps = 47/239 (19%)
Query: 649 PLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMD 708
LT++++ Y V K QLL++I+G +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 709 VLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSP 768
VL+GRKT G+I G+I I G P + F R +GY EQ D+HSPN+TV E++ FSA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLDK-NFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 769 EIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 828
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 829 EPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
EPTSGLD++AA ++R +K + ++G+ ++CTIHQPS IFE FD L+L+K GG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 319 bits (819), Expect = 1e-95
Identities = 180/595 (30%), Positives = 276/595 (46%), Gaps = 42/595 (7%)
Query: 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI-IEGDIRIGGYPKVQH 733
+ LL +++G +PG L A+MG SGAGKTTLM+ L+ R G+ G + + G P
Sbjct: 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAK 95
Query: 734 TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY 793
IS Y +Q+D+ P +TV E ++F A LR+ + K K E V+EVLQ + L
Sbjct: 96 EMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN 155
Query: 794 SLVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET 852
+ +G+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ +K + +
Sbjct: 156 TRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK 215
Query: 853 GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFESIPGVLKIKDN 912
G+T++CTIHQPS ++FE FD +ILM GR+ Y G + +N
Sbjct: 216 GKTIICTIHQPSSELFELFDKIILM-AEGRVAYLGS-PDQAVPFFSDLG-----HPCPEN 268
Query: 913 YNPATWMLEVSSSSIETELG--VDFGQIYRE---STLHQENKELGKQLSSPSPG---SKD 964
YNPA + ++V + +E +I S + ++ S + G +
Sbjct: 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSE 328
Query: 965 LHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGKKIKT 1024
+ + W QF A L + LS R+P R++ T ++L G+++ QG T
Sbjct: 329 NMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQG---LT 385
Query: 1025 QQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQVLVEV 1084
Q+ V N+ GA++ N V+ + E V RE +G+Y AY A+ + E+
Sbjct: 386 QKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAEL 445
Query: 1085 PYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNY---MGMLMVSLTPNVQL 1141
P I ++ ITY MIG A L F L N G L+ + +
Sbjct: 446 PLFIILPALFTSITYWMIGLRSGATHFLTFL---FLVTLVANVATSFGYLISCAFSSTSM 502
Query: 1142 A-SILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVL---NGMLSSQYGDIEKE 1197
A ++ L LF G+ I IP ++ W YL SW G+L +Q+ D+
Sbjct: 503 ALTVGPPFVIPFL-LFGGFFINSDSIPVYFKWLSYL---SWFRYGNEGLLINQWSDV-DN 557
Query: 1198 ISAFGETKTVSGFLD-----DYFGFNHDLLGVVGIVLLIFPIVF--ASLFAYFIG 1245
I T + F + L + I L+I F + FA I
Sbjct: 558 IECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIR 612
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 1e-74
Identities = 95/239 (39%), Positives = 144/239 (60%), Gaps = 45/239 (18%)
Query: 649 PLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMD 708
+TL+F ++ V K ++ QLL +++G +PG LTA+MG SGAGK+TL++
Sbjct: 1 GVTLSFRNLTVTV-------KSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLN 53
Query: 709 VLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSP 768
L+GR+TG + G++ I G P + +F +I GY Q+DI P +TV E+++F+A LR
Sbjct: 54 ALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110
Query: 769 EIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 828
GLS +RKR++IA+ELV+NPS++F+D
Sbjct: 111 ----------------------------------GLSGGERKRVSIALELVSNPSLLFLD 136
Query: 829 EPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
EPTSGLD+ +A VM ++ + +TGRT++C+IHQPS +IFE FD L+L+ GR+IY G
Sbjct: 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 253 bits (649), Expect = 2e-72
Identities = 168/598 (28%), Positives = 274/598 (45%), Gaps = 55/598 (9%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMT 63
++G G GKTTL++AL+ + +K SG V NG +D + SAY+ Q DL I +T
Sbjct: 56 VMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115
Query: 64 VRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYI 123
VRE + F A + M V EK + D +
Sbjct: 116 VREHLMFQAHLR--------MPR-----------------------RVTKKEKRERVDEV 144
Query: 124 LKILGLDICADTIVGDPMR-RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQ 182
L+ LGL CA+T +G P R +G+SGG++KRL ++ LF DE ++GLDS +
Sbjct: 145 LQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS 204
Query: 183 IVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDCGF 242
+V LK L T + ++ QP+ E F+LFD ++LMAEG++ Y G FF D G
Sbjct: 205 VVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGH 263
Query: 243 RCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEE---L 299
CPE ADF +V++ + R+ I++ F S +G +
Sbjct: 264 PCPENYNPADFYVQVLAVIPGSENESRE-------RIEKICDSFAVSDIGRDMLVNTNLW 316
Query: 300 AHSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITM 359
+ + + Y+ + W A R +L + R+ + + Q ++ A +
Sbjct: 317 SGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIG 376
Query: 360 TAFLRSQL-AVDVLHANAYLGALFYALMILI-VNGFPELNMTASRLAVFYKQRDLCFYPA 417
+L L V + N GALF L + N FP +N+ + L VF ++ Y
Sbjct: 377 LIYLGQGLTQKGVQNIN---GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRV 433
Query: 418 WAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAI 477
AY + +I ++PL ++ ++TS+TY++IG F L+ V + S I
Sbjct: 434 SAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLI 493
Query: 478 ASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFL 537
+ F + +++L +G ++ LLFGGF I S+P + KW ++ YG GL +N++
Sbjct: 494 SCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWS 553
Query: 538 APRWEKITSGNTTV-----GRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLAL 590
+ TS NTT G LE+ L+F ++ ++ + L+ F ++ AL
Sbjct: 554 DVDNIECTSANTTGPCPSSGEVILET--LSFRNADLYLDLIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 199 bits (508), Expect = 3e-58
Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 64/230 (27%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF--VPQKTSAYISQYDLH 58
M L+LG PG G +TLL AL+ + ++ V G++ YNG EF Y+S+ D+H
Sbjct: 35 MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVH 94
Query: 59 IAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNL 118
+TVRET+DF+ RC+G + +++ IS
Sbjct: 95 FPTLTVRETLDFALRCKG--------------------------NEFVRGIS-------- 120
Query: 119 QTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSS 178
GG++KR++ E +V L D + GLDSS
Sbjct: 121 ----------------------------GGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152
Query: 179 TTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
T +I+ ++ + + T +SL Q + E +DLFD V+++ EG+ +Y+G
Sbjct: 153 TALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 209 bits (535), Expect = 7e-55
Identities = 131/558 (23%), Positives = 250/558 (44%), Gaps = 56/558 (10%)
Query: 674 QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--GIIEGDIRIGGYPK- 730
K +L + G +PG LT ++G G+G +TL+ ++ G +EG I G
Sbjct: 71 TKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPE 130
Query: 731 --VQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPE--IDLKTKAEFVNEV---- 782
+H + Y + D+H P++TV E++ F+A + +P+ D ++ E+ +
Sbjct: 131 EIKKH-YRGDVVYNAETDVHFPHLTVGETLDFAARCK-TPQNRPDGVSREEYAKHIADVY 188
Query: 783 LQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 842
+ T L + + VG V G+S +RKR++IA + I D T GLD+ A
Sbjct: 189 MATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEF 248
Query: 843 MRAVKN-VVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFE 901
+RA+K T + I+Q S D +E FD +I++ G IY GP + K YFE
Sbjct: 249 IRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGP----ADKAKQYFE 303
Query: 902 SIPGVLKIKDNYNPATWMLEVSSSSIET-----ELGV-----DFGQIYRESTLHQENKEL 951
+ K D A ++ ++S + E V +F +R S E +L
Sbjct: 304 KMG--FKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNS---PEYAQL 358
Query: 952 GKQLSSP-----SPGSKDLHFPTHFPQNG-------------WEQFKACLWKQNLSYWRN 993
K++ +K+ + +H + Q K CL + L N
Sbjct: 359 MKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGN 418
Query: 994 PSYNLRRIVFTCAMSLLYGILFWQQGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPL 1053
PS+ L + M+L+ +F+ K + ++ GA++ A +F ++ + +
Sbjct: 419 PSFTLFMVFGNIIMALILSSVFY---NLPKNTSDFYSRGGALFFAILFNAFSSLLEIASM 475
Query: 1054 VATERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFW 1113
R ++ + R +Y P A + A ++ E+P+ I++V++ II Y M+ + +A + F+
Sbjct: 476 Y-EARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFF 534
Query: 1114 SLHGTFCNLLYFNYMGMLMVSLTPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWA 1173
L F L +++ + ++T + A A+ L+++ G++I + + W W
Sbjct: 535 YLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWI 594
Query: 1174 YYLCPTSWVLNGMLSSQY 1191
YY+ P ++ ++ +++
Sbjct: 595 YYVNPLAYAFESLMVNEF 612
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 185 bits (472), Expect = 3e-53
Identities = 77/214 (35%), Positives = 125/214 (58%), Gaps = 6/214 (2%)
Query: 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR-KTGGIIEGDIRIGGYPKVQH 733
K ++L+D++ G + A++G SG+GKTTL+D +SGR + GG G I G P+
Sbjct: 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77
Query: 734 TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY 793
F + Y Q+DI P +TV E++ ++A LRL P + A V + D +
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILRL-PRK--SSDAIRKKRVEDVLLRD-LAL 133
Query: 794 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETG 853
+ +G V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ + +
Sbjct: 134 TRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRN 193
Query: 854 RTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
R V+ TIHQP D+F FD ++L+ + G I+YSG
Sbjct: 194 RIVILTIHQPRSDLFRLFDRILLL-SSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 4e-52
Identities = 153/598 (25%), Positives = 291/598 (48%), Gaps = 71/598 (11%)
Query: 649 PLTLTFEDVQYYVDTPSAMKKRGFNQKKL-----------------QLLSDITGTFRPGI 691
P+TL F DV Y V MK +G N K++ +L+ +TG PG
Sbjct: 37 PITLKFMDVCYRVKF-ENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 692 LTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPN 751
+ A++G SG+GK+TL++ L+GR G G I + R G+ Q+DI P+
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPH 154
Query: 752 ITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKR 811
+TV E+++F + LRL + + K V+ + L + +++G + G+S +RKR
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 812 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAF 871
++IA E++ NPS++ +DEPTSGLDA AA ++ + ++ + G+T+V ++HQPS +++ F
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274
Query: 872 DDLILMKNGGRIIYSGPLGQHSCKVIDYFESIPGVLKIKDNY--NPATWMLEVSSSSIET 929
D ++++ GR ++ G + YFES+ ++ NPA ++L++++ +T
Sbjct: 275 DSVLVLSE-GRCLFFGKGSD----AMAYFESV----GFSPSFPMNPADFLLDLANGVCQT 325
Query: 930 ELGV---DFGQIYRESTLHQENKELGKQLSSPSPGSKDLHFPTHFPQ------------- 973
+ GV + + ++S + N L +P K +HFPQ
Sbjct: 326 D-GVSEREKPNV-KQSLVASYNTLL-------APKVKAAIEMSHFPQANARFVGSASTKE 376
Query: 974 ---------NGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGKKIKT 1024
+ W + L +++L ++ S+N R+ A +LL G+++W +
Sbjct: 377 HRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDFR--- 433
Query: 1025 QQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQVLVEV 1084
+V + G ++ +IF+G+ + V + ER + +ER +GMY+ +Y A+++ ++
Sbjct: 434 --DVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDL 491
Query: 1085 PYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQLASI 1144
P I I++ +TY M G +L +L +G+ + + + + AS
Sbjct: 492 PMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKAST 551
Query: 1145 LASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISAFG 1202
+ + + L G+ + K +P W Y+ T + +++ QYG+ ++ S G
Sbjct: 552 IVTVTMLAFVLTGGFYVHK--LPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLG 607
|
Length = 659 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 1e-50
Identities = 63/216 (29%), Positives = 112/216 (51%), Gaps = 7/216 (3%)
Query: 977 EQFKACLWKQNLSYWRNPSYNLR-RIVFTCAMSLLYGILFWQQGKKIKTQQEVFNMFGAM 1035
Q KA L ++ L WR+PS L R++ M+L++G +F + T N G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGN----LDTSLGGLNRPGLL 56
Query: 1036 YSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYV 1095
+ + +F ++ + + P+ ER VL RE + +YSP AY A++LVE+P +QA+I++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 1096 IITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQLASILASSSYSMLNL 1155
+I Y M+G S + F L L + +G+ + +L P+ + AS + L L
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 1156 FCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQY 1191
G+ I +P W W YYL P ++ + + ++++
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 7e-45
Identities = 173/653 (26%), Positives = 304/653 (46%), Gaps = 95/653 (14%)
Query: 665 SAMKKRGFN---QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI-IE 720
SA+ G N + KL +L D +G +P +T L+G +GKTTL+ L+G+ + +
Sbjct: 163 SALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVS 222
Query: 721 GDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLR--------LS----- 767
G+I GY + + S Y QND+H +TV+E++ FSA + LS
Sbjct: 223 GEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARR 282
Query: 768 ---------PEIDLKTKAE---------FVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809
E+DL KA + L+ + LD K ++VG + G+S Q+
Sbjct: 283 EKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQK 342
Query: 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIF 868
KR+T +V +FMDE ++GLD+ +++ ++ +V T TV+ ++ QP+ + F
Sbjct: 343 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETF 402
Query: 869 EAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFESIPGVLKIKDNYNPATWMLEVSSSSIE 928
+ FDD+IL+ G+I+Y GP ++++FES K + A ++ EV+S +
Sbjct: 403 DLFDDIILLSE-GQIVYQGPRDH----ILEFFESCG--FKCPERKGTADFLQEVTSKKDQ 455
Query: 929 TELGVDFGQIYRESTLHQENK---------ELGKQLSSPSPGSKD----LHFPTHFPQNG 975
+ D + YR ++ + + +L +LS P S+ L F + +
Sbjct: 456 EQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVF-SKYSVPK 514
Query: 976 WEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGKKIKTQQEVFNMF-GA 1034
E KAC K+ L RN + + V ++ + +F ++T+ N GA
Sbjct: 515 MELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVF------LRTEMHTRNEEDGA 568
Query: 1035 MYSAAIFFG--IN--NCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQ 1090
+Y A+ F IN N + + L+ V Y++R + PW ++ L+ +P I+
Sbjct: 569 LYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIE 628
Query: 1091 AVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGM------LMVSLTPNVQLASI 1144
+V++V+ITY IG+ A + F L LL F M L+ S+ + +A+
Sbjct: 629 SVVWVVITYYSIGFAPEASRFFKQL------LLVFLIQQMAAGIFRLIASVCRTMIIANT 682
Query: 1145 LASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSW-----VLNGMLSSQYGDIEKEIS 1199
+ ++ L G+ + K +IP WW WAY++ P S+ +N M + ++ + +++
Sbjct: 683 GGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMN---KMA 739
Query: 1200 AFGETKTVSGFLDDYFGFNHD----LLGVVGIVLLIFPIVFASLFAYFIGKLN 1248
+ T+ + L+ F D +GV LL F I+F LF + LN
Sbjct: 740 SDNSTRLGTAVLNI-FDVFTDKNWYWIGVGA--LLGFTILFNVLFTLALTYLN 789
|
Length = 1470 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 8e-45
Identities = 62/219 (28%), Positives = 104/219 (47%), Gaps = 15/219 (6%)
Query: 674 QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP--KV 731
L ++ PG + L+G +GAGKTTL+ +L+G G+I + GY K
Sbjct: 15 GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKE 72
Query: 732 QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI 791
R GY Q P +TV E++ F A L + + + + E E+L+ L+
Sbjct: 73 PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIE---ELLELFGLEDK 129
Query: 792 KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKN-VV 850
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + ++
Sbjct: 130 ANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAK 184
Query: 851 ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889
E G T++ + H + E D +I++ + G+II G
Sbjct: 185 EGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGTP 221
|
Length = 293 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 6e-38
Identities = 66/229 (28%), Positives = 114/229 (49%), Gaps = 38/229 (16%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
+ +LG G GKTTLL A+SG++ SG++ +NG QK AY+ Q D+ +
Sbjct: 35 VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLP 94
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
+TVRET+ ++A + +D++++ DV
Sbjct: 95 GLTVRETLTYTAILRLPRKSSDAIRKKR----------VEDV------------------ 126
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG-ELIVGPTRALFMDEISNGLDSST 179
L A T +G + +G+SGG+++R++ +L+ P + L +DE ++GLDS T
Sbjct: 127 -------LLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP-KVLILDEPTSGLDSFT 178
Query: 180 TFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+VS L L + ++++ QP + F LFD ++L++ G+IVY G
Sbjct: 179 ALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 6e-38
Identities = 61/215 (28%), Positives = 103/215 (47%), Gaps = 7/215 (3%)
Query: 324 ELLKACATREFLLMKRNSF-IYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALF 382
LKA REFL R+ +++ Q +++A + T F L G LF
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLD---TSLGGLNRPGLLF 57
Query: 383 YALMILIVNGFPEL-NMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTS 441
++++ + + + V ++ Y AY + ++++P+SLL++ ++
Sbjct: 58 FSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLL 117
Query: 442 LTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASLFRTVAVSLMIGTMAILMLLLF 501
+ Y+++G V RFF L+L L + L IA+L + + IG + +L LLL
Sbjct: 118 IVYFMVGL--PVSRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLL 175
Query: 502 GGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEF 536
GF IP SMP WL+W +++ PLTY L NEF
Sbjct: 176 SGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 5e-37
Identities = 59/225 (26%), Positives = 106/225 (47%), Gaps = 36/225 (16%)
Query: 667 MKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI-IEGDIRI 725
G + K+ +L D +G +PG + ++G G+G +TL+ L+ R G + +EGDI
Sbjct: 10 SFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHY 69
Query: 726 GGYP--KVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVL 783
G P + + Y + D+H P +TV E++ F+ + NE
Sbjct: 70 NGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-------------GNEF- 115
Query: 784 QTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 843
V G+S +RKR++IA LV+ S++ D T GLD+ A ++
Sbjct: 116 -----------------VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEIL 158
Query: 844 RAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ ++ + T +++Q S +I++ FD ++++ GR IY G
Sbjct: 159 KCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (356), Expect = 2e-34
Identities = 126/522 (24%), Positives = 243/522 (46%), Gaps = 51/522 (9%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMT 63
+LG G GK+TLL+AL+G++ +G + N + + + ++T +++Q D+ +T
Sbjct: 99 VLGPSGSGKSTLLNALAGRI-QGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPHLT 156
Query: 64 VRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYI 123
VRET+ F + +++L K S+ EK L + +
Sbjct: 157 VRETLVFCS--------------LLRLPK-----------------SLTKQEKILVAESV 185
Query: 124 LKILGLDICADTIVGDPMRRGVSGGQKKRLTTG-ELIVGPTRALFMDEISNGLDSSTTFQ 182
+ LGL C +TI+G+ RG+SGG++KR++ E+++ P+ L +DE ++GLD++ ++
Sbjct: 186 ISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS-LLILDEPTSGLDATAAYR 244
Query: 183 IVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDCGF 242
+V L L T + S+ QP+ + +FD V++++EG+ ++ G S +FE GF
Sbjct: 245 LVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGF 303
Query: 243 RCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEE--ELA 300
ADFL ++ + Q ++ P ++ Q + + L K++ E++
Sbjct: 304 SPSFPMNPADFLLDLANGVCQTDGVSEREKP----NVKQSLVASYNTLLAPKVKAAIEMS 359
Query: 301 HSFNKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT 360
H + + S K++ + + + +L++R+ +S + + +
Sbjct: 360 HFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAA 419
Query: 361 AFLRSQL--AVDVLHANAYLGALFYALMILIVNGFPELNMT---ASRLAVFYKQRDLCFY 415
A L + D LG LF+ + + FP N A+F K+R Y
Sbjct: 420 ALLAGLMWWHSDFRDVQDRLGLLFF--ISIFWGVFPSFNSVFVFPQERAIFVKERASGMY 477
Query: 416 PAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFR 475
+Y + + +P+ L+ ++ ++TY++ G PE+G F L+L L S L
Sbjct: 478 TLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGL 537
Query: 476 AIASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKW 517
A+ + + I T+ +L +L GGF + K +PS + W
Sbjct: 538 ALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHK--LPSCMAW 577
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 7e-31
Identities = 75/275 (27%), Positives = 121/275 (44%), Gaps = 53/275 (19%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ--KTSAYISQYDLH 58
+ LLG G GKTTLL L+G L + SGE+ GY + + + + Y+ Q
Sbjct: 33 IFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSL 89
Query: 59 IAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNL 118
E+TVRE ++F AR G +E I
Sbjct: 90 YPELTVRENLEFFARLYGLSKEEA--EERI------------------------------ 117
Query: 119 QTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG-ELIVGPTRALFMDEISNGLDS 177
+ +L++ GL+ A+ V R +SGG K+RL+ L+ P L +DE ++GLD
Sbjct: 118 --EELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDP-ELLILDEPTSGLDP 169
Query: 178 STTFQIVSFLKHLVHITDATALIS--LLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235
+ +I L+ L T L+S +L+ E +L D V+++ +GKI+ G + +
Sbjct: 170 ESRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRVIILNDGKIIAEGTPEELKE 226
Query: 236 FFEDCGFRC--PERKGVADFLQEVISRKDQEQYWH 268
F G PER +A+ L+ + K +E+
Sbjct: 227 KFGGKGVIELEPERLELAELLEGLKLVKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 2e-30
Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 31/221 (14%)
Query: 672 FNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP-- 729
+ L DI+ T + G ++G +G+GK+TL+ +L+G G G++ + G
Sbjct: 9 YPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLT 66
Query: 730 -KVQHTFARISGYCEQNDIHSP-----NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVL 783
R G QN P TVEE V F PE +++ + V E L
Sbjct: 67 KLSLKELRRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEAL 119
Query: 784 QTIELDGIK----YSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 839
+ + L+G++ ++L G G Q++R+ IA L +P I+ +DEPT+GLD
Sbjct: 120 ELVGLEGLRDRSPFTLSG-----G----QKQRVAIAGVLAMDPDILLLDEPTAGLDPAGR 170
Query: 840 AIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880
++ +K + G+T++ H + E D +I++++G
Sbjct: 171 RELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 19/212 (8%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFA- 736
+ D++ G + L+G +GAGKTT + +L+G R T G I GY A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG----TAYINGYSIRTDRKAA 73
Query: 737 -RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSL 795
+ GYC Q D +TV E + F A L+ P+ E V +L+ + L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPK---SEIKEEVELLLRVLGLTDKANKR 130
Query: 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRT 855
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V + GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRS 184
Query: 856 VVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
++ T H S+D EA D I + + G++ G
Sbjct: 185 IILTTH--SMDEAEALCDRIAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 67/215 (31%), Positives = 104/215 (48%), Gaps = 16/215 (7%)
Query: 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH- 733
K + L ++ T PG+ L+G +GAGKTTLM +L+ G IRI G ++
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPS--SGTIRIDGQDVLKQP 67
Query: 734 -TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIK 792
R GY Q PN TV E + + AWL+ I K V+EVL+ + L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 793 YSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET 852
+G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 853 GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
R V+ + H D+ + + ++ G++++ G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-25
Identities = 55/213 (25%), Positives = 101/213 (47%), Gaps = 19/213 (8%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 737
L D++ +PG A++G +GAGK+TL+ + G + T G IR+ G P + R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEK-ERKR 69
Query: 738 ISGYCEQNDIHSPN--ITVEESVIFSAWLRLSPEIDLKTKA-EFVNEVLQTIELDGIKYS 794
I GY Q + I+V + V+ + L V+E L+ + L +
Sbjct: 70 I-GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR 128
Query: 795 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGR 854
+G LS Q++R+ +A LV +P ++ +DEP +G+D + + ++ + G
Sbjct: 129 QIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGM 183
Query: 855 TVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
T++ H + + E FD ++L+ ++ SG
Sbjct: 184 TILVVTHDLGL-VLEYFDRVLLLN--RTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 6e-25
Identities = 34/64 (53%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 541 WEKITSG-NTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKS 599
W K SG N T+G L+SRGL ++ +YWI + AL+GFT+LFN++FTLALT+L GKS
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 600 RTII 603
+ I+
Sbjct: 61 QAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 24/227 (10%)
Query: 671 GFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730
G+ K + L D++ + G +T ++G +G+GK+TL+ L+G G++ + G
Sbjct: 11 GYGGKPI--LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKD- 65
Query: 731 VQHT----FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTK-AEFVNEVLQT 785
+ A+ Y Q+ +TV E V+ + L + E V E L+
Sbjct: 66 IASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALEL 125
Query: 786 IELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 845
+ L+ + V LS +R+R+ IA L I+ +DEPTS LD V+
Sbjct: 126 LGLEHLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL 180
Query: 846 VKNVV-ETGRTVVCTIHQPSIDIFEAF---DDLILMKNGGRIIYSGP 888
++++ E G TVV +H D+ A D LIL+K+ G+I+ G
Sbjct: 181 LRDLNREKGLTVVMVLH----DLNLAARYADHLILLKD-GKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 1e-23
Identities = 86/356 (24%), Positives = 158/356 (44%), Gaps = 74/356 (20%)
Query: 563 FDSSFY-----WISIAALIGFTVLF------NVVFTLALTFLKSPGKSRTIIAYEKYSKL 611
F SS ++SIA L+ + F ++ L L I+A E + L
Sbjct: 224 FLSSAVLEFFAYLSIA-LVAVYIGFRLLGEGDLTLFAGLFVL--------ILAPEFFQPL 274
Query: 612 QDQ-------KDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQY-YVDT 663
+D G + +D+ +++P+ T ++ + V P+ ++ E++ + Y D
Sbjct: 275 RDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAE-VANEPPIEISLENLSFRYPDG 333
Query: 664 PSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDI 723
LSD+ T + G LTAL+G SGAGK+TL+++L G +G+I
Sbjct: 334 K-------------PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEI 378
Query: 724 RIGGYPKV---QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
R+ G + + + QN +F+ +R + I L
Sbjct: 379 RVNGIDLRDLSPEAWRKQISWVSQN-----------PYLFAGTIREN--ILLARPDASDE 425
Query: 781 EVLQTIELDGIKYSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 831
E++ ++ G+ V P G +GLS Q +RL +A L++ S++ +DEPT
Sbjct: 426 EIIAALDQAGL-LEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPT 484
Query: 832 SGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ LDA I+++A++ + + +TV+ H+ D +A D I++ + GR++ G
Sbjct: 485 AHLDAETEQIILQALQELAK-QKTVLVITHRLE-DAADA--DRIVVLDNGRLVEQG 536
|
Length = 559 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 61/218 (27%), Positives = 110/218 (50%), Gaps = 21/218 (9%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII---EGDIRIGGYP-KVQH 733
+L DI+ + G +TAL+G +GAGK+TL+ + G ++ G+I+I G P + +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG-----LLKPSSGEIKIFGKPVRKRR 72
Query: 734 TFARISGYCEQNDIHSPN--ITVEESVIFSAWLRLSPEIDLKTKA-EFVNEVLQTIELDG 790
RI GY Q + ITV++ V+ + + L K E V+E L+ + ++
Sbjct: 73 KRLRI-GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED 131
Query: 791 IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV 850
++ +G LS Q++R+ +A L NP ++ +DEP +G+D + +K +
Sbjct: 132 LRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR 186
Query: 851 ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
+ G+TV+ H + + FD +I + +I SGP
Sbjct: 187 QEGKTVLMVTHDLGL-VMAYFDRVICLN--RHLIASGP 221
|
Length = 254 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 99.9 bits (250), Expect = 2e-23
Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 19/223 (8%)
Query: 668 KKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG--IIEG-D 722
K G +K++ L D+ G A++G SG+GK+TL+++L G + T G +I G D
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 723 IRIGGYPKVQHTFARISGYCEQNDIHS--PNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
+ ++ + G+ QN + P++TV E+V + K AE +
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELL 126
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
EVL G++ L+ S LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 127 EVL------GLEDRLLKKK-PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 841 IVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882
V+ ++ + E G+T++ H P ++ + D +I +K+G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 9e-23
Identities = 64/225 (28%), Positives = 102/225 (45%), Gaps = 29/225 (12%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY------PKVQH 733
L D++ + PG AL+G SGAGK+TL+ L+G G + I G K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG--LVEPTSGSVLIDGTDINKLKGKALR 74
Query: 734 TFARISGYCEQNDIHSPNITVEESV---------IFSAWLRLSPEIDLKTKAEFVNEVLQ 784
R G Q ++V E+V + + L P+ + K +A L+
Sbjct: 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE-KQRAL---AALE 130
Query: 785 TIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 844
+ L Y LS Q++R+ IA L+ P +I DEP + LD ++ VM
Sbjct: 131 RVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD 185
Query: 845 AVKNV-VETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
+K + E G TV+ ++HQ + E D ++ +K+ GRI++ GP
Sbjct: 186 LLKRINREEGITVIVSLHQVDL-AREYADRIVGLKD-GRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 1e-22
Identities = 53/218 (24%), Positives = 89/218 (40%), Gaps = 59/218 (27%)
Query: 672 FNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731
+ QK +L+D++ G + AL+G SG+GK+TL+ ++G + G I I G
Sbjct: 10 YGQK--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLT 65
Query: 732 QHTFA-----RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTI 786
R G Q+ P++TV E++
Sbjct: 66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL-------------------------- 99
Query: 787 ELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 846
GLS Q++R+ +A L +P ++ +DEPTS LD V +
Sbjct: 100 ----------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALL 143
Query: 847 KNVVET-GRTVVCTIHQPSIDIFEAF---DDLILMKNG 880
K++ G TVV H D+ EA D ++++++G
Sbjct: 144 KSLQAQLGITVVLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 2e-22
Identities = 54/220 (24%), Positives = 101/220 (45%), Gaps = 24/220 (10%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYPKVQ-- 732
L D++ G L+G +G+GK+TL+ +L+G +++ G++ + G
Sbjct: 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG-----LLKPTSGEVLVDGLDTSSEK 72
Query: 733 --HTFARISGYCEQN-DIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD 789
+ G QN D TVE+ V F L + + E V E L+ + L+
Sbjct: 73 SLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG--LENLG-LPREEIEERVAEALELVGLE 129
Query: 790 GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNV 849
+ LS Q++R+ IA L P I+ +DEPT+GLD + ++ +K +
Sbjct: 130 ELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKL 184
Query: 850 V-ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
E G+T++ H +++ + D +++ + G+I+ G
Sbjct: 185 KEEGGKTIIIVTH--DLELVLEYADRVVVLDDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 2e-22
Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 28/209 (13%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFA 736
+L D++ G + AL G +GAGKTTL +L+G +++ G I + G P
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES----SGSILLNGKPIKAKERR 70
Query: 737 RISGYCEQN-DIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIK--- 792
+ GY Q+ D +V E ++ E+D E VL+ ++L +K
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLGL-----KELDAG--NEQAETVLKDLDLYALKERH 123
Query: 793 -YSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE 851
SL S Q++RL IA L++ ++ DEPTSGLD + V ++ +
Sbjct: 124 PLSL---------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA 174
Query: 852 TGRTVVCTIHQPSIDIFEAFDDLILMKNG 880
G+ V+ H + + D ++L+ NG
Sbjct: 175 QGKAVIVITHDYEF-LAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 4e-22
Identities = 66/213 (30%), Positives = 106/213 (49%), Gaps = 22/213 (10%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFA- 736
+ L D++ T PG AL+G SG GKTTL+ +++G + G+I I G V
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRD-VTGVPPE 70
Query: 737 -RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSL 795
R G Q+ P++TV E++ F LR P+ +++ + V E+L+ + L+G+
Sbjct: 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR---VRELLELVGLEGLLNRY 127
Query: 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNV-VETGR 854
LS Q++R+ +A L PS++ +DEP S LDA+ + +K + E G
Sbjct: 128 P-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGI 182
Query: 855 TVVCTIHQPSIDIFEAF---DDLILMKNGGRII 884
T + H D EA D + +M N GRI+
Sbjct: 183 TTIYVTH----DQEEALALADRIAVM-NEGRIV 210
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 5e-22
Identities = 62/225 (27%), Positives = 108/225 (48%), Gaps = 38/225 (16%)
Query: 673 NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPK 730
+K+Q L ++ + G A++G SG+GK+TL+++L G R T G++R+ G
Sbjct: 13 GGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT----SGEVRVDG--- 65
Query: 731 VQHTFARIS------------GYCEQNDIHS--PNITVEESVIFSAWLRLSPEIDLKTKA 776
+++S G+ Q+ + P++T E+V L P+ + + +A
Sbjct: 66 --TDISKLSEKELAAFRRRHIGFVFQS--FNLLPDLTALENVELPLLLAGVPKKERRERA 121
Query: 777 EFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 836
E E+L+ + L S LS Q++R+ IA L +P II DEPT LD+
Sbjct: 122 E---ELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTGNLDS 173
Query: 837 RAAAIVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880
VM ++ + E G T+V H P ++ E D +I +++G
Sbjct: 174 ETGKEVMELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 5e-22
Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 38/229 (16%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG-IIEGDIRIGGYPKVQ---- 732
L D++ + RPG + L+G +GAGKTTL +++SG R T G ++ I G P +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 733 ---HTFARISGYCEQNDIHSPNITVEESVI----------FSAWLRLSPEIDLKTKAEFV 779
TF + P +TV E+V+ E + + +AE
Sbjct: 76 GIGRTFQIPRLF--------PELTVLENVMVAAQARTGSGLLLARARREEREARERAE-- 125
Query: 780 NEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 839
E+L+ + L + G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 126 -ELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEET 179
Query: 840 AIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
+ ++ + E G TV+ H +D+ + D + + + GR+I G
Sbjct: 180 EELAELIRELRERGITVLLVEH--DMDVVMSLADRVTVLDQGRVIAEGT 226
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 93.6 bits (234), Expect = 7e-22
Identities = 47/210 (22%), Positives = 84/210 (40%), Gaps = 53/210 (25%)
Query: 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQ 732
K L DI+ T G + L+G +GAGKTTL+ ++ G + G+I++ G +
Sbjct: 11 GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD----SGEIKVLGKDIKK 66
Query: 733 HTFA--RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG 790
R GY + N+TV E++ S
Sbjct: 67 EPEEVKRRIGYLPEEPSLYENLTVRENLKLS----------------------------- 97
Query: 791 IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV 850
G ++RL +A L+ +P ++ +DEPTSGLD + ++ +
Sbjct: 98 -----------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK 142
Query: 851 ETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880
+ G+T++ + H + D + ++ NG
Sbjct: 143 KEGKTILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 2e-21
Identities = 37/87 (42%), Positives = 62/87 (71%), Gaps = 3/87 (3%)
Query: 143 RGVSGGQKKRLTTG-ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALIS 201
RG+SGG++KR++ EL+ P LF+DE ++GLDSS+ Q++S L+ L T T + S
Sbjct: 110 RGLSGGERKRVSIALELVSNP-SLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICS 167
Query: 202 LLQPAPETFDLFDDVMLMAEGKIVYHG 228
+ QP+ E F+LFD ++L+++G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 3e-21
Identities = 64/226 (28%), Positives = 101/226 (44%), Gaps = 27/226 (11%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE---GDIRIGGYPKVQ 732
Q L +I PG A++G SGAGK+TL+ ++ + G I DI K++
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLR 75
Query: 733 HTFARISGYCEQNDIHSPNITVEESVI---------FSAWLRLSPEIDLKTKAEFVNEVL 783
RI G Q+ +TV E+V+ + + L E D K +A L
Sbjct: 76 KLRRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEED-KERA------L 127
Query: 784 QTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 843
+E G+ LS Q++R+ IA L P +I DEP + LD + + VM
Sbjct: 128 SALERVGLAD--KAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVM 185
Query: 844 RAVKNV-VETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
+K + E G TV+ +HQ +D+ + + D I+ G I++ G
Sbjct: 186 DYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 3e-20
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
+T ++G G GK+TLL+AL+G+ L VSGEV NG LD+ +K Y+ Q D+
Sbjct: 37 LTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHP 95
Query: 61 EMTVRETIDFSARCQG 76
+TVRET+ F+A+ +G
Sbjct: 96 TLTVRETLMFAAKLRG 111
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 89.0 bits (222), Expect = 4e-20
Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 46/212 (21%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG-RKTGGIIEGDIRIGGYPKVQHTFA 736
+L D++ + G + ++G +GAGK+TL+ L+G K G+I + G
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDG--------- 60
Query: 737 RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLV 796
D+ S + K A + V Q +EL G+ + L
Sbjct: 61 --------KDLAS--------------------LSPKELARKIAYVPQALELLGLAH-LA 91
Query: 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV-ETGRT 855
P + LS +R+R+ +A L P I+ +DEPTS LD ++ ++ + E G+T
Sbjct: 92 DRP-FNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKT 150
Query: 856 VVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
VV +H ++ D +IL+K+ GRI+ G
Sbjct: 151 VVMVLHDLNL-AARYADRVILLKD-GRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 5e-20
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 785 TIELDGIKYSLVGLPG-------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837
I +DG + + L V LS QR+R+ +A L+ NP ++ +DEPTSGLD
Sbjct: 55 EILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA 114
Query: 838 AAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880
+ ++ ++ + E GRTV+ H P A D +I++K+G
Sbjct: 115 SRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 7e-20
Identities = 62/243 (25%), Positives = 104/243 (42%), Gaps = 37/243 (15%)
Query: 654 FEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR 713
FE+V + +++KK +L DI + +PG A++G +GAGKTTL+++L
Sbjct: 5 FENVNF-----------SYDEKK-PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF 52
Query: 714 KTGGIIEGDIRIGGYPKVQHTFARIS---GYCEQNDIHSPNITVEESVIFSAWLRLSPEI 770
+G I I G + + G Q D + T+ E++
Sbjct: 53 YD--PQKGQILIDGIDIRDISRKSLRSMIGVVLQ-DTFLFSGTIMENIRLG--------- 100
Query: 771 DLKTKAEFVNEVLQTIELDG-IKYSLVGL-----PGVSGLSTEQRKRLTIAVELVANPSI 824
E V E + I G LS +R+ L IA ++ +P I
Sbjct: 101 RPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160
Query: 825 IFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884
+ +DE TS +D ++ A++ +++ GRT + H+ S I A D IL+ + G+II
Sbjct: 161 LILDEATSNIDTETEKLIQEALEKLMK-GRTSIIIAHRLST-IKNA--DKILVLDDGKII 216
Query: 885 YSG 887
G
Sbjct: 217 EEG 219
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 8e-20
Identities = 68/266 (25%), Positives = 113/266 (42%), Gaps = 48/266 (18%)
Query: 638 PKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMG 697
+ + LP + FE+V + + +L D++ PG A++G
Sbjct: 458 GDKTLIHLPKLQGEIEFENVSFR-----------YGPDDPPVLEDLSLEIPPGEKVAIVG 506
Query: 698 VSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQND-------- 746
SG+GK+TL+ +L G +G I + G + R GY Q+
Sbjct: 507 RSGSGKSTLLKLLLGLYK--PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR 564
Query: 747 ----IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802
+ +P T EE I A +L+ EF+ + Y G +
Sbjct: 565 ENIALGNPEATDEE--IIEA-AQLA-GAH-----EFIEN-------LPMGYDTPVGEGGA 608
Query: 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQ 862
LS QR+RL +A L++ P I+ +DE TS LD AI+++ + ++ GRTV+ H+
Sbjct: 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHR 667
Query: 863 PSIDIFEAFDDLILMKNGGRIIYSGP 888
S I A D I++ + G+I+ G
Sbjct: 668 LST-IRSA--DRIIVLDQGKIVEQGS 690
|
Length = 709 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 1e-19
Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 29/220 (13%)
Query: 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE--GDIRIGGYPK 730
K ++L DI+ + G + +G +GAGKTT M ++ G + G I G
Sbjct: 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEA 70
Query: 731 VQHTFARISG---YCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE 787
++ A I Y PN+T E++ A L + + ++EVL +
Sbjct: 71 LRRIGALIEAPGFY--------PNLTARENLRLLARLLGIRK-------KRIDEVLDVVG 115
Query: 788 LDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVK 847
L V G S ++RL IA+ L+ NP ++ +DEPT+GLD + +
Sbjct: 116 LKDSAKKKVK-----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELIL 170
Query: 848 NVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
++ + G TV+ + H S +I + D + ++ N G++I G
Sbjct: 171 SLRDQGITVLISSHLLS-EIQKVADRIGII-NKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 1e-19
Identities = 64/221 (28%), Positives = 109/221 (49%), Gaps = 27/221 (12%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE---GDIRIGGYPKVQH 733
++ + T PG LT L+G +G+GK+TL+ +L+G R G ++ D+ G +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH--GLSRRAR 73
Query: 734 TFARISGYCEQNDIHSPNITVEESVIF------SAWLRLSPEIDLKTKAEFVNEVLQTIE 787
AR EQ+ + +TV + V S W SP A V+ L E
Sbjct: 74 --ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPH-----DAAVVDRALARTE 126
Query: 788 LDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVK 847
L S + +S LS +R+R+ +A L P ++ +DEPT+ LD RA + V+
Sbjct: 127 L-----SHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVR 181
Query: 848 NVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
+ TG TVV +H +++ ++ D +++ +GGR++ +GP
Sbjct: 182 ELAATGVTVVAALH--DLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 86.7 bits (216), Expect = 2e-19
Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 65/232 (28%)
Query: 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS 711
+ F++V + + + +L D++ T +PG A++G SG+GK+TL+ +L
Sbjct: 1 IEFKNVSF-----------SYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL 49
Query: 712 GRKTGGIIEGDIRIGGYPK---VQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSP 768
G+I I G + + Y Q + +FS
Sbjct: 50 RLYD--PTSGEILIDGVDLRDLDLESLRKNIAYVPQ-----------DPFLFSG------ 90
Query: 769 EIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 828
TI + I LS QR+R+ IA L+ +P I+ +D
Sbjct: 91 ----------------TIR-ENI------------LSGGQRQRIAIARALLRDPPILILD 121
Query: 829 EPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880
E TS LD A+++ A++ + + G+TV+ H+ S D +I++ +G
Sbjct: 122 EATSALDPETEALILEALRALAK-GKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 3e-19
Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 18/224 (8%)
Query: 668 KKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRI 725
K+ +K +Q + ++ T +PG +T L+G +GAGKTT + +L+G G +
Sbjct: 9 KRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT----V 64
Query: 726 GGYPKVQHTFA--RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVL 783
G+ V+ R G+ + +T E++ + A L +L + E + + L
Sbjct: 65 DGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRL 124
Query: 784 QTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 843
EL + V G ST R+++ IA LV +P ++ +DEPT+GLD A +
Sbjct: 125 GMEELLDRR--------VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR 176
Query: 844 RAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
++ + G+ ++ + H + E D +++ + GR++Y G
Sbjct: 177 EFIRQLRALGKCILFSTH--IMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 8e-19
Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 28/226 (12%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG--IIEGDIRIGGYPKVQH 733
+L + R G + A++G SG+GK+TL+ ++ G R G +I+G+ G +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELY 73
Query: 734 TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY 793
R G Q+ ++TV E+V F LR + + E V E L+
Sbjct: 74 RLRRRMGMLFQSGALFDSLTVFENVAF--PLREHTRLSEEEIREIVLEKLE--------- 122
Query: 794 SLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKN 848
VGL G + LS +KR+ +A L +P ++ DEPT+GLD A+ ++ +++
Sbjct: 123 -AVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRS 181
Query: 849 VVET-GRTVVCTIHQPSIDIFEAFD--DLILMKNGGRIIYSGPLGQ 891
+ + G T + H D+ AF D I + G+I+ G +
Sbjct: 182 LKKELGLTSIMVTH----DLDTAFAIADRIAVLYDGKIVAEGTPEE 223
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 2e-18
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 18/189 (9%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 737
L + G + AL+G +GAGK+TL+ L+G R G + D Y + R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 738 IS-GYCEQN---DIHSPNITVEESVIFSAW-LRLSPEIDLKTKAEFVNEVLQTIELDGIK 792
G Q+ + + V++ V F L LS V E L + G++
Sbjct: 68 QRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEA----EVERRVREALTAVGASGLR 121
Query: 793 YSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET 852
LS ++KR+ IA + P ++ +DEPT+GLD ++ ++ +
Sbjct: 122 ERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE 176
Query: 853 GRTVVCTIH 861
G TVV + H
Sbjct: 177 GMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 3e-18
Identities = 64/216 (29%), Positives = 99/216 (45%), Gaps = 23/216 (10%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE-GDIRIGGYPKVQHTFA 736
+ DI+ + G L+G SG GKTTL+ +++G + + G I I P
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP----PEK 76
Query: 737 RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLV 796
R G Q+ P++TVEE+V F L++ ++ V E L+ + L+G
Sbjct: 77 RPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGFADRKP 134
Query: 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNV-VETGRT 855
LS Q++R+ +A LV P ++ +DEP S LDA+ + + +K + E G T
Sbjct: 135 -----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGIT 189
Query: 856 VVCTIHQPSIDIFEAF---DDLILMKNGGRIIYSGP 888
V H D EA D + +M N GRI G
Sbjct: 190 FVYVTH----DQEEALAMSDRIAVM-NDGRIEQVGT 220
|
Length = 352 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 4e-18
Identities = 71/234 (30%), Positives = 112/234 (47%), Gaps = 23/234 (9%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR---KTGGIIEGDIRIGGYPKVQ-H 733
Q L D+ G + A++G SGAGK+TL+ L+G +G I+ ++I +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77
Query: 734 TFARISGYCEQNDIHSPNITVEESVIF------SAWLRLSPEIDLKTKAEFVNEVLQTIE 787
R G Q P ++V E+V+ S W L + KA+ L +E
Sbjct: 78 KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQ----ALDALE 133
Query: 788 LDGI-KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 846
GI + S LS Q++R+ IA LV P II DEP + LD +A VM +
Sbjct: 134 RVGILDKAYQR---ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDIL 190
Query: 847 KNV-VETGRTVVCTIHQPSIDI-FEAFDDLILMKNGGRIIYSGPLGQHSCKVID 898
K++ E G TV+ +HQ +D+ + D +I +K GRI++ GP + + + +D
Sbjct: 191 KDINQEDGITVIVNLHQ--VDLAKKYADRIIGLKA-GRIVFDGPASELTDEALD 241
|
Length = 258 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 4e-18
Identities = 67/226 (29%), Positives = 103/226 (45%), Gaps = 35/226 (15%)
Query: 671 GFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGY 728
G + L DI+ + G AL+G SG GK+TL+ +++G R T G++ + G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT----SGEVLVDGE 66
Query: 729 PKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL 788
P R GY Q D P +TV ++V E+ KAE + +EL
Sbjct: 67 PVTGPGPDR--GYVFQQDALLPWLTVLDNVALG------LELQGVPKAEARERAEELLEL 118
Query: 789 DGIKYSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 843
VGL G LS R+R+ +A L +P ++ +DEP S LDA +
Sbjct: 119 -------VGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQ 171
Query: 844 RAVKNVV-ETGRTVVCTIHQPSIDIFEAF---DDLILMKNG-GRII 884
+ ++ ETG+TV+ H DI EA D ++++ GRI+
Sbjct: 172 EELLDIWRETGKTVLLVTH----DIDEAVFLADRVVVLSARPGRIV 213
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 4e-18
Identities = 57/216 (26%), Positives = 103/216 (47%), Gaps = 18/216 (8%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TFA 736
L D++ T RPG AL+G +GAGK+TL +L+ EG I + G+ + A
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ--EGQISVAGHDLRRAPRAALA 74
Query: 737 RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLV 796
R+ +Q + +++V +++ + A L + + + + L E K
Sbjct: 75 RLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDK---- 129
Query: 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRT 855
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + V+ + G +
Sbjct: 130 ----VRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLS 185
Query: 856 VVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891
V+ H +D EA D L+++ + GR++ G +
Sbjct: 186 VLWATHL--VDEIEADDRLVVL-HRGRVLADGAAAE 218
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 5e-18
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 23/226 (10%)
Query: 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG-IIEGDIRIGGYPKVQH 733
L ++D++ RPG + L+G +GAGKTTL ++++G + + G +I I G P H
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLP--PH 74
Query: 734 TFARIS-GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNE---------VL 783
AR+ Q P +TV E+V A RL L E +L
Sbjct: 75 RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELL 134
Query: 784 QTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 843
+ + L + G LS Q++RL IA L P ++ +DEP +GL+ +
Sbjct: 135 EFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA 189
Query: 844 RAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
++ + + G T++ H + + D ++++ N G +I G
Sbjct: 190 ELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVL-NYGEVIAEGT 233
|
Length = 250 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 1e-17
Identities = 58/220 (26%), Positives = 106/220 (48%), Gaps = 22/220 (10%)
Query: 674 QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYPK 730
K+Q + D++ G +T L+G +GAGKTTL+ ++ ++ G + I G
Sbjct: 12 GSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMI-----ATLLIPDSGKVTIDGVDT 66
Query: 731 VQHTFA---RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE 787
V+ +I + +++ +T E++ + A RL+ + KA + E+ + ++
Sbjct: 67 VRDPSFVRRKIGVLFGERGLYA-RLTARENLKYFA--RLNGLSRKEIKAR-IAELSKRLQ 122
Query: 788 LDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVK 847
L VG ST ++++ IA LV +PSI+ +DEPTSGLD R +K
Sbjct: 123 LLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIK 177
Query: 848 NVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ GR V+ + H + EA D +++ + G ++ G
Sbjct: 178 QLKNEGRAVIFSSH--IMQEVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 5e-17
Identities = 56/220 (25%), Positives = 102/220 (46%), Gaps = 31/220 (14%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 739
L +++ T R G A++G G+GK+TL+ +L+G G + + G Q A +
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT--SGSVLLDGTDIRQLDPADLR 77
Query: 740 ---GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLV 796
GY Q D+ T+ +++ A P D +L+ EL G+ +
Sbjct: 78 RNIGYVPQ-DVTLFYGTLRDNITLGA-----PLAD-------DERILRAAELAGVTDFVN 124
Query: 797 GLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVK 847
P GLS QR+ + +A L+ +P I+ +DEPTS +D + + ++
Sbjct: 125 KHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR 184
Query: 848 NVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
++ +T++ H+PS+ + D +I+M + GRI+ G
Sbjct: 185 QLLG-DKTLIIITHRPSLL--DLVDRIIVM-DSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 7e-17
Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 29/236 (12%)
Query: 667 MKKRGFNQKKL----QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGD 722
M R N KK L DI+ + G L AL+G SGAGK+TL+ +++G +T G
Sbjct: 1 MSIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD--AGR 58
Query: 723 IRIGGYPKVQ----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLS--PEIDLKTKA 776
IR+ G R G+ Q+ P++TV +++ F +R E +++ +
Sbjct: 59 IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARV 118
Query: 777 EFVNEVLQTIELDGI--KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834
E E+L+ ++L+G+ +Y LS QR+R+ +A L P ++ +DEP L
Sbjct: 119 E---ELLRLVQLEGLADRYPA-------QLSGGQRQRVALARALAVEPKVLLLDEPFGAL 168
Query: 835 DARAAAIVMRAV--KNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
DA+ +R K G T V H + E D ++++ GRI GP
Sbjct: 169 DAKVRK-ELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 7e-17
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 34/216 (15%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 737
L DI + G A++G SG GK+TL+ +++G + T G++ + G P
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT----SGEVLLDGRPVTGPGPDI 74
Query: 738 ISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVG 797
GY Q D P +TV ++V L E+ K+KAE + +EL VG
Sbjct: 75 --GYVFQEDALLPWLTVLDNV------ALGLELRGKSKAEARERAKELLEL-------VG 119
Query: 798 LPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV-E 851
L G LS R+R+ IA L P ++ +DEP LDA + + + E
Sbjct: 120 LAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179
Query: 852 TGRTVVCTIHQPSIDIFEAF---DDLILMKNGGRII 884
T +TV+ H D+ EA D ++++ N I
Sbjct: 180 TRKTVLLVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 8e-17
Identities = 69/273 (25%), Positives = 130/273 (47%), Gaps = 36/273 (13%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYPKVQ 732
+ + +I+ PG + L+G +GAGKTT R G++E G+I G P Q
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTF-----RMILGLLEPTEGEITWNGGPLSQ 68
Query: 733 HTFARISGYC-EQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI 791
RI GY E+ ++ P +TVE+ + + A L+ P+ +++ K + L+ +E+ G
Sbjct: 69 EIKNRI-GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKKLQAW---LERLEIVGK 123
Query: 792 KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE 851
K + LS ++++ ++ P ++ +DEP SGLD ++ A+ + E
Sbjct: 124 KTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE 178
Query: 852 TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL----GQHSCKVIDYFES----- 902
G T++ + H+ + E D L+++K G ++Y G + K + ES
Sbjct: 179 EGATIIFSSHRME-HVEELCDRLLMLKKGQTVLY-GTVEDIRRSFGKKRL-VIESDLSLE 235
Query: 903 ----IPGVLKIKDNYNPATWMLEVSSSSIETEL 931
IPG+LKI +W +++ + ++ E+
Sbjct: 236 ELANIPGILKIT-ETKDGSWRIQIENETVAREI 267
|
Length = 300 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 9e-17
Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 12/190 (6%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIEGDIRIGGYPKVQHTFA 736
L I + G L+G SGAGK+TL+ ++ + G I + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 737 RIS-GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSL 795
R G Q+ P+ V E+V F+ E+ E V +EL G+ +
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAFAL------EVTGVPPREIRKRVPAALELVGLSHKH 130
Query: 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRT 855
LP + LS +++R+ IA +V +P+I+ DEPT LD +M +K + + G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 856 VVCTIHQPSI 865
VV H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-16
Identities = 72/279 (25%), Positives = 112/279 (40%), Gaps = 50/279 (17%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY------PKVQH 733
L D+ G L+G SG GK+TL+ +++G + G+I I G P+
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPE--- 73
Query: 734 TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSP--EIDLKTKAEFVNEVLQTIELDGI 791
R QN P++TV E++ F LR P EID + V EV + + L+ +
Sbjct: 74 --KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR-----VKEVAKLLGLEHL 126
Query: 792 KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE 851
L P LS QR+R+ +A LV P + +DEP S LDA+ +R +
Sbjct: 127 ---LNRKP--LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-----LRVLM---- 172
Query: 852 TGRTVVCTIHQ--------PSIDIFEA--FDDLILMKNGGRIIYSGP----LGQHSCKVI 897
R+ + +H+ + D EA D I++ N GRI G + + +
Sbjct: 173 --RSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFV 230
Query: 898 DYFESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFG 936
F P + +K L + V G
Sbjct: 231 AGFIGSPPMNFLKAEVKADGNGLSIPEDKKVALEQVILG 269
|
Length = 338 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 2e-16
Identities = 49/210 (23%), Positives = 82/210 (39%), Gaps = 63/210 (30%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFA 736
+L +++ + PG A++G SG+GK+TL ++ G R T G +R+ G
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT----SGRVRLDGA-------- 64
Query: 737 RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL------DG 790
DI D + V + Q EL +
Sbjct: 65 ---------DISQ--------------------WDPNELGDHVGYLPQDDELFSGSIAEN 95
Query: 791 IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV 850
I LS QR+RL +A L NP I+ +DEP S LD + +A+ +
Sbjct: 96 I------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK 143
Query: 851 ETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880
G T + H+P + D ++++++G
Sbjct: 144 AAGATRIVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 4e-16
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 16/192 (8%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 739
L D++ R G L G SGAGKTTL+ +L G T G +RI G + ++
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 740 ------GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY 793
G Q+ P+ TV E+V E+ K + E V + G+++
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALPL------EVRGKKEREIQRRVGAALRQVGLEH 129
Query: 794 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETG 853
P LS +++R+ IA +V +P ++ DEPT LD + ++ +K + + G
Sbjct: 130 KADAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187
Query: 854 RTVVCTIHQPSI 865
TV+ H S+
Sbjct: 188 TTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 4e-16
Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 15/213 (7%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT--FA 736
+L D++ G L AL+G SG GKTTL+ ++G + G I I + H
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIAD-RDLTHAPPHK 78
Query: 737 RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLV 796
R QN P++ VE++V F + P+ D+ AE V + L+ + L
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADI---AERVADALKLVGLGDAAAH-- 133
Query: 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET--GR 854
LP + LS ++R+ IA + P ++ +DEP S LDA A + + + E
Sbjct: 134 -LP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 855 TVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
T++C H D D +MK+ GR+ G
Sbjct: 191 TILCVTHDQD-DALTLADKAGIMKD-GRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 5e-16
Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 36/214 (16%)
Query: 689 PGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE------GDIRIGGYPKVQHTFARISG 740
+T + G SGAGK+TL+ ++G + GG I D R Q R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ---RKIG 78
Query: 741 YCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG 800
Q P++ V E++ F R D V+E+L + LD +
Sbjct: 79 LVFQQYALFPHLNVRENLAFGL-KRKRNREDR----ISVDELLDLLGLDHLLNR-----Y 128
Query: 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTI 860
+ LS +++R+ +A L A P ++ +DEP S LD ++ +K + + +
Sbjct: 129 PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK-------NL 181
Query: 861 HQPSI----DIFEAF---DDLILMKNGGRIIYSG 887
+ P I D+ EA D +++M++ GR+ Y G
Sbjct: 182 NIPVIFVTHDLSEAEYLADRIVVMED-GRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 5e-16
Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 19/220 (8%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT--- 734
+LL ++ RPG + A++G +GAGK+TL+ LSG + G++ + G P
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEE 72
Query: 735 FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYS 794
AR QN + TV+E V S + + + L +L G+
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGR-EPEEDERIAAQALAATDLSGLAGR 131
Query: 795 LVGLPGVSGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRAVKN 848
LS +++R+ +A L V + +F+DEPTS LD +R +
Sbjct: 132 D-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQ 186
Query: 849 VVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
+ G V+ +H +++ + D I++ + GR+I SG
Sbjct: 187 LAREGGAVLAVLH--DLNLAAQYADRIVLLHQGRVIASGS 224
|
Length = 259 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 5e-16
Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 24/190 (12%)
Query: 686 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP----KVQHTFARISGY 741
T PG AL+G SGAGK+TL+++L G EG I + G P +I +
Sbjct: 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPLADADADSWRDQI-AW 400
Query: 742 CEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSL-VGL-- 798
Q+ T+ E++ + P+ + E L+ LD +L GL
Sbjct: 401 VPQHP-FLFAGTIAENIRLAR-----PDAS----DAEIREALERAGLDEFVAALPQGLDT 450
Query: 799 ---PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRT 855
G +GLS Q +RL +A + + ++ +DEPT+ LDA A V+ A++ + + GRT
Sbjct: 451 PIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-GRT 509
Query: 856 VVCTIHQPSI 865
V+ H+ ++
Sbjct: 510 VLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 7e-16
Identities = 53/202 (26%), Positives = 84/202 (41%), Gaps = 31/202 (15%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGY 728
L DI+ G +TAL+G SG GK+TL+ D++ G EG++ + G
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD----EGEVLLDGK 67
Query: 729 PKVQHTFARIS-----GYCEQNDIHSPNI---TVEESVIFSAWLRLSPEIDLKTKAEFVN 780
+ G Q PN ++ ++V + L + E V
Sbjct: 68 DIYDLDVDVLELRRRVGMVFQ----KPNPFPGSIYDNVAYGLRLHG--IKLKEELDERVE 121
Query: 781 EVLQTIELDG-IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 839
E L+ L +K L L GLS Q++RL +A L P ++ +DEPTS LD +
Sbjct: 122 EALRKAALWDEVKDRLHAL----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPIST 177
Query: 840 AIVMRAVKNVVETGRTVVCTIH 861
A + + + + T+V H
Sbjct: 178 AKIEELIAELKKE-YTIVIVTH 198
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 9e-16
Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 35/239 (14%)
Query: 668 KKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG--IIEGDI 723
+ L D++ G + ++G SGAGK+TL+ +++ R T G ++G
Sbjct: 10 TFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQ- 68
Query: 724 RIGGYPKVQ-HTFARISGYCEQNDIHSPNI----TVEESVIFSAWLRLSPEIDLKTKAEF 778
+ + + + G Q+ N+ TV E+V F L L+ + +
Sbjct: 69 DLTALSEAELRQLRQKIGMIFQH----FNLLSSRTVFENVAFP--LELA-GVPKAEIKQR 121
Query: 779 VNEVLQTIELDGIKYSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSG 833
V E+L+ LVGL + LS Q++R+ IA L NP I+ DE TS
Sbjct: 122 VAELLE----------LVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSA 171
Query: 834 LDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891
LD ++ +K++ G T+V H+ +++ + D + + + GR++ G + +
Sbjct: 172 LDPETTQSILELLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQGRLVEEGTVSE 228
|
Length = 339 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 60/220 (27%), Positives = 107/220 (48%), Gaps = 24/220 (10%)
Query: 671 GFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI----- 725
G + Q+L DI PG + L G SG+GKTTL+ ++ G ++ + EG +++
Sbjct: 12 GHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQEL 69
Query: 726 GGYPKVQHTFARIS-GYCEQ--NDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEV 782
G + + R + GY Q N + +T ++V + L L P + + E +
Sbjct: 70 YGASEKELVQLRRNIGYIFQAHNLLGF--LTARQNVQMA--LELQPNLSYQEARERARAM 125
Query: 783 LQTIEL-DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 841
L+ + L D + Y P LS Q++R+ IA LV P ++ DEPT+ LD+++
Sbjct: 126 LEAVGLGDHLDY----YPH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRD 179
Query: 842 VMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880
V+ ++ + E G T++ H I + D ++ M++G
Sbjct: 180 VVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 21/212 (9%)
Query: 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTF---A 736
++ R G + L+G +GAGKTT + +L+ + T G + G+ V+
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREVRR 73
Query: 737 RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLV 796
RI G Q+ +T E++ A L P + + + + E+L + L LV
Sbjct: 74 RI-GIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERID---ELLDFVGLLEAADRLV 129
Query: 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRT 855
S R+RL IA LV P ++F+DEPT GLD + A V ++ + E G T
Sbjct: 130 -----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT 184
Query: 856 VVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
++ T H ++ E D + + + GRII G
Sbjct: 185 ILLTTHY--MEEAEQLCDRVAIIDHGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 2e-15
Identities = 99/462 (21%), Positives = 179/462 (38%), Gaps = 80/462 (17%)
Query: 465 TVHLTSISLFRAIASLFRTVAVSLMIG-TMAILMLLLFGGFIIPKKSMPSWLKWGFWVCP 523
V + +F +I L ++ + + +A+++LL+ + + +
Sbjct: 125 LVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVR 184
Query: 524 LTYGEIGLTVNEFLAP---------------RWEKITSGNTTVGRQTLESRGLNFDSSFY 568
GE+ + E L+ R+E+ + L
Sbjct: 185 EALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLA----P 240
Query: 569 WISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAY---------------EKYSKLQD 613
+ + + +G ++ + L L+ + G + A+ E S LQ
Sbjct: 241 LMLLLSSLGTVLVLALGGFLVLSGSLTVG---ALAAFILYLLRLLTPILQLGEVVSLLQR 297
Query: 614 QKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFN 673
S+ ++R + +D + P L ++ FE+V +
Sbjct: 298 ---ASAAAERLFELLDEEPEVEDPPDP----LKDTIGSIEFENVSFSYP----------- 339
Query: 674 QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP---- 729
K +L DI+ + PG A++G SG+GK+TL+ +L G+I I G
Sbjct: 340 -GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGIDIRDI 396
Query: 730 KVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKA----EFVNEVLQT 785
+ RI G Q D + T+ E++ EI+ K EF+ +
Sbjct: 397 SLDSLRKRI-GIVSQ-DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDG 454
Query: 786 IELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 845
+ ++VG GV LS QR+RL IA L+ NP I+ +DE TS LD A++ A
Sbjct: 455 YD------TIVGERGV-NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDA 507
Query: 846 VKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+K +++ GRT + H+ S + D +I++ N GRI+ G
Sbjct: 508 LKKLLK-GRTTLIIAHRLS--TIKNADRIIVLDN-GRIVERG 545
|
Length = 567 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 69/217 (31%), Positives = 99/217 (45%), Gaps = 26/217 (11%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII---EGDIRIGGY-P---KVQ 732
L I+ T G + +G +GAGKTT + +LSG ++ G++R+ G P + +
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSG-----LLQPTSGEVRVAGLVPWKRRKK 91
Query: 733 HTFARISGYCEQNDIHSPNITVEESVIFSAWL-RLSPEIDLKTKAEFVNEVLQTIELDGI 791
RI Q ++ V +S A + L P K E E+L EL
Sbjct: 92 F-LRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELS-ELLDLEEL--- 146
Query: 792 KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV- 850
+ P V LS QR R IA L+ P I+F+DEPT GLD A + +K
Sbjct: 147 ----LDTP-VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR 201
Query: 851 ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
E G TV+ T H DI EA +L+ + GR++Y G
Sbjct: 202 ERGTTVLLTSHYMK-DI-EALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 69/252 (27%), Positives = 106/252 (42%), Gaps = 63/252 (25%)
Query: 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS 711
+ FE+V K+ G +K ++++ G L+G SG+GKTT M
Sbjct: 1 IEFENVT---------KRYGGGKK---AVNNLNLEIAKGEFLVLIGPSGSGKTTTM---- 44
Query: 712 GRKTGGIIE---GDIRIGG-----YPKVQHTFARISGYCEQNDIHSPNITVEESVI---- 759
+ +IE G+I I G V+ R GY Q P++TVEE++
Sbjct: 45 -KMINRLIEPTSGEIFIDGEDIREQDPVE--LRRKIGYVIQQIGLFPHMTVEENIALVPK 101
Query: 760 FSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS-------GLSTEQRKRL 812
W + + E +E+L +LVGL LS Q++R+
Sbjct: 102 LLKWPK-------EKIRERADELL----------ALVGLDPAEFADRYPHELSGGQQQRV 144
Query: 813 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAF 871
+A L A+P ++ MDEP LD + K + + G+T+V H DI EAF
Sbjct: 145 GVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTH----DIDEAF 200
Query: 872 ---DDLILMKNG 880
D + +MKNG
Sbjct: 201 RLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 75.6 bits (187), Expect = 4e-15
Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 44/191 (23%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGY--RLDEFVPQKTSAYISQYDLHIAE 61
LLGH G GKTT L L+G+L + SG NGY R D +++ Y Q+D E
Sbjct: 33 LLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDE 89
Query: 62 MTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTD 121
+TVRE + F AR + G +KE ++L
Sbjct: 90 LTVREHLRFYARLK--GLPKSEIKEEVEL------------------------------- 116
Query: 122 YILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTF 181
+L++LGL A+ +SGG K++L+ ++G L +DE ++GLD ++
Sbjct: 117 -LLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRR 170
Query: 182 QIVSFLKHLVH 192
I + +
Sbjct: 171 AIWDLILEVRK 181
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 5e-15
Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 18/204 (8%)
Query: 688 RPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQH--TFARISGYCE 743
R G + +G +GAGKTT + +L+ R T G R+ GY V+ R G
Sbjct: 17 REGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVREPRKVRRSIGIVP 72
Query: 744 QNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSG 803
Q ++T E++ L P+ + + +AE E+L+ EL VG
Sbjct: 73 QYASVDEDLTGRENLEMMGRLYGLPKDEAEERAE---ELLELFELGEAADRPVG-----T 124
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQP 863
S R+RL IA L+ P ++F+DEPT+GLD R + ++ + E G T++ T H
Sbjct: 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHY- 183
Query: 864 SIDIFEAFDDLILMKNGGRIIYSG 887
++ + D I + + GRII G
Sbjct: 184 -MEEADKLCDRIAIIDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 5e-15
Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 39/232 (16%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII---EGDIRIGGYPKVQHT 734
+L + G + A++G SG+GK+TL+ R G++ +G+I I G Q +
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLL-----RLILGLLRPDKGEILIDGEDIPQLS 76
Query: 735 FARIS------GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL 788
+ G Q ++TV E+V F L+ + +++ + L
Sbjct: 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFP----------LREHTKLPESLIRELVL 126
Query: 789 DGIKYSLVGLPGV------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 842
K LVGL G S LS RKR+ +A + +P ++F+DEPTSGLD +A ++
Sbjct: 127 M--KLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI 184
Query: 843 MRAVKNVVET-GRTVVCTIHQPSIDIFEAFD--DLILMKNGGRIIYSGPLGQ 891
++ + + G TV+ H D+ D + + G++I G +
Sbjct: 185 DELIRELNDALGLTVIMVTH----DLDSLLTIADRVAVLADGKVIAEGTPEE 232
|
Length = 263 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 25/199 (12%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE----GDIRIGG--YPKV 731
+L D+ T G + A++G SG+GK+TL++++ G++E G + + G P +
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNII------GLLEKFDSGQVYLNGQETPPL 65
Query: 732 QHTFARIS-----GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTI 786
A GY QN N TVEE+ L L + +K E + + +
Sbjct: 66 NSKKASKFRREKLGYLFQNFALIENETVEEN------LDLGLKYKKLSKKEKREKKKEAL 119
Query: 787 ELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 846
E G+ L + LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 120 EKVGLNLKLK--QKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLL 177
Query: 847 KNVVETGRTVVCTIHQPSI 865
+ + G+T++ H P +
Sbjct: 178 LELNDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 6e-15
Identities = 64/229 (27%), Positives = 100/229 (43%), Gaps = 40/229 (17%)
Query: 672 FNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGY 728
+ KK + D+ T G L+G SG+GKTT + + +IE G+I I G
Sbjct: 11 YGNKKA--VDDVNLTIEEGEFLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILIDGE 63
Query: 729 PKVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEI---DLKTKAEFVNEV 782
R GY Q P++TV E++ P++ D + + +E+
Sbjct: 64 DISDLDPVELRRKIGYVIQQIGLFPHLTVAENIA------TVPKLLGWDKERIKKRADEL 117
Query: 783 LQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 842
L + LD +Y P LS Q++R+ +A L A+P I+ MDEP LD I
Sbjct: 118 LDLVGLDPSEY-ADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALD----PIT 170
Query: 843 MRAVKNVV-----ETGRTVVCTIHQPSIDIFEAFD--DLILMKNGGRII 884
+ ++ + E G+T+V H DI EA D I + + G I+
Sbjct: 171 RKQLQEEIKELQKELGKTIVFVTH----DIDEALKLADRIAVMDAGEIV 215
|
Length = 309 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 6e-15
Identities = 55/230 (23%), Positives = 100/230 (43%), Gaps = 33/230 (14%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKV---- 731
+ D++ PG + ++G SG+GK+TL L G + G I G++ + G +
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 732 ---QHTFARISGYCEQNDIHS--PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTI 786
+ + Q+ + S P +T+ + + + L ++AE ++ +
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH-----GKGSRAEARKRAVELL 137
Query: 787 ELDGIKYSLVGLPGVSG-------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 839
E VGLP LS R+R+ IA+ L P ++ DEPT+ LD
Sbjct: 138 EQ-------VGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQ 190
Query: 840 AIVMRAVKN-VVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
A ++ +K+ E G V+ H + + E D +++M G I+ +GP
Sbjct: 191 AQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYK-GEIVETGP 238
|
Length = 539 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 7e-15
Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 25/197 (12%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGII---EGDIRIGGYPKVQH 733
L S ++ T G L G +G+GKTTL+ +++G G I GDI + H
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACH 76
Query: 734 TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY 793
Y + P +TV E++ F W L + + L+ + L + +
Sbjct: 77 -------YLGHRNAMKPALTVAENLEF--WAAF-----LGGEELDIAAALEAVGLAPLAH 122
Query: 794 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETG 853
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ ++ + G
Sbjct: 123 ----LPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQG 177
Query: 854 RTVVCTIHQPSIDIFEA 870
V+ H P + + A
Sbjct: 178 GIVIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 8e-15
Identities = 58/217 (26%), Positives = 98/217 (45%), Gaps = 29/217 (13%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 737
L ++ T RPG + AL+G +GAGK+TLM +LSG G+I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEILIDGKP------VA 73
Query: 738 ISGYCEQND-----IH-----SPNITVEESVIFSAWL-RLSPEIDLKTKAEFVNEVLQTI 786
S + +H PN++V E++ R ID K E+L +
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL 133
Query: 787 ELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 846
LD +LVG LS QR+ + IA L + ++ +DEPT+ L + + +
Sbjct: 134 GLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLI 188
Query: 847 KNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883
+ + G ++ H+ ++FE D + ++++G +
Sbjct: 189 RRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 9e-15
Identities = 60/214 (28%), Positives = 106/214 (49%), Gaps = 18/214 (8%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-HTFA 736
Q L D+ G L AL+G SG+GK+TL+ +++G + G IR+ G + H
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARD 71
Query: 737 RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI--KYS 794
R G+ Q+ ++TV +++ F +R P+ +K + V E+L+ ++L+G+ +Y
Sbjct: 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR---VEELLELVQLEGLGDRYP 128
Query: 795 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNV-VETG 853
+ LS QR+R+ +A L P ++ +DEP LDA+ + ++ + E
Sbjct: 129 -------NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH 181
Query: 854 RTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
T V H + E D +++M N G+I G
Sbjct: 182 VTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIG 213
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 1e-14
Identities = 63/229 (27%), Positives = 99/229 (43%), Gaps = 38/229 (16%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HT 734
LL D++ T RPG + A++G +GAGK+TL+ LSG + G++R+ G P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD--SGEVRLNGRPLADWSPAE 73
Query: 735 FARISGYCEQNDIHSPNI----TVEESVIFSAWLRLSP-EIDLKTKAEFVNEVLQTIELD 789
AR Q ++ TVEE V + +P + V L ++L
Sbjct: 74 LARRRAVLPQ----HSSLSFPFTVEEVV----AMGRAPHGLSRAEDDALVAAALAQVDLA 125
Query: 790 GIKYSLVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVM 843
+ P +SG EQ +R+ +A L P + +DEPTS LD V+
Sbjct: 126 HLAGRD--YPQLSG--GEQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVL 180
Query: 844 RAVKN-VVETGRTVVCTIHQPSIDIFEAF---DDLILMKNGGRIIYSGP 888
R + E G V+ +H D+ A D ++L+ GR++ G
Sbjct: 181 RLARQLAHERGLAVIVVLH----DLNLAARYADRIVLLHQ-GRLVADGT 224
|
Length = 258 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 66/232 (28%), Positives = 105/232 (45%), Gaps = 37/232 (15%)
Query: 672 FNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731
+ K L D++ T G L ++G SG GKTTL+++++G T G I++ G
Sbjct: 13 YEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIE 70
Query: 732 QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI 791
R G QN+ P + V ++V F LR I+ + E +++L
Sbjct: 71 GPGAER--GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLA------- 118
Query: 792 KYSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA----RAAAIV 842
LVGL G + LS R+R+ IA L P ++ +DEP LDA + ++
Sbjct: 119 ---LVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELL 175
Query: 843 MRAVKNVVETGRTVVCTIHQPSIDIFEAF---DDLILMKNG-GRIIYSGPLG 890
+ + ETG+ V+ H DI EA L+++ G GR++ PL
Sbjct: 176 LDLWQ---ETGKQVLLITH----DIEEALFLATRLVVLSPGPGRVVERLPLD 220
|
Length = 259 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 1e-14
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 16/178 (8%)
Query: 688 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP---KVQHTFARISGYCEQ 744
+ G L+G +GAGKTT + +L G G I + G P + +H R+ G Q
Sbjct: 31 QRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRARHARQRV-GVVPQ 87
Query: 745 NDIHSPNITVEESV-IFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSG 803
D P+ TV E++ +F + LS V +L+ +L+ + VG
Sbjct: 88 FDNLDPDFTVRENLLVFGRYFGLSAA----AARALVPPLLEFAKLENKADAKVG-----E 138
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIH 861
LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +++++ G+T++ T H
Sbjct: 139 LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 58/221 (26%), Positives = 113/221 (51%), Gaps = 30/221 (13%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLS---GRKTGGI-IEGDIRIGGYPKVQHTF 735
L D++ G +T+++G +GAGK+TL+ ++S + +G I I+G + + P +
Sbjct: 17 LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDG-LELTSTPS-KELA 74
Query: 736 ARISGYCEQNDIHSPNITVEESVIFSAWL----RLSPEIDLKTKAEFVNEVLQTIELDGI 791
++S ++N I+S +TV + V F + RL+ E +NE ++ + L+ +
Sbjct: 75 KKLSILKQENHINS-RLTVRDLVGFGRFPYSQGRLTKE-----DRRIINEAIEYLHLEDL 128
Query: 792 KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV- 850
+ LS QR+R IA+ L + + +DEP + LD + + +M+ ++ +
Sbjct: 129 SDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLAD 183
Query: 851 ETGRTVVCTIHQPSIDIFEA---FDDLILMKNGGRIIYSGP 888
E G+T+V +H DI A D ++ +KN G+++ G
Sbjct: 184 ELGKTIVVVLH----DINFASCYSDHIVALKN-GKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-14
Identities = 64/282 (22%), Positives = 108/282 (38%), Gaps = 55/282 (19%)
Query: 629 DAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFR 688
GP R + +L L+ + S + +++ + D++ R
Sbjct: 265 KIIRLPRRGPLRAEPLLSVRNLSKRY---------GSRKGLFVRERGEVKAVDDVSFDLR 315
Query: 689 PGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE-------------GDIRIGGYPKVQH 733
G L+G SG+GK+TL +L+G + G I +R Q
Sbjct: 316 EGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQD 375
Query: 734 TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY 793
++ ++ P +TV + + LR+ + V E+L+
Sbjct: 376 PYSSLN----------PRMTVGDILAEP--LRIHGGGSGAERRARVAELLE--------- 414
Query: 794 SLVGLPGVSG------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVK 847
LVGLP LS QR+R+ IA L P ++ +DEP S LD A V+ +K
Sbjct: 415 -LVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLK 473
Query: 848 NVV-ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
++ E G T + H + + D + + GRI+ GP
Sbjct: 474 DLQEELGLTYLFISH--DLAVVRYIADRVAVMYDGRIVEEGP 513
|
Length = 539 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 16/197 (8%)
Query: 694 ALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSP 750
++G +G+GK+ L++ ++G +G I+ I P + Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 751 NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810
++TV +++ + R K E +VL+ E+ GI + L P LS +++
Sbjct: 85 HMTVYKNIAYGLKKRKVD------KKEIERKVLEIAEMLGIDHLLNRKPET--LSGGEQQ 136
Query: 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEA 870
R+ IA LV NP I+ +DEP S LD R + +K + + V + + +
Sbjct: 137 RVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWAL 196
Query: 871 FDDLILMKNGGRIIYSG 887
D + +M N G++I G
Sbjct: 197 ADKVAIMLN-GKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-14
Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 26/219 (11%)
Query: 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII---EGDIRIGGY-P-KVQHTFA 736
DI+ G + +G +GAGK+T + +L+G ++ G +R+ G P + + +
Sbjct: 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTG-----LLLPTSGKVRVNGKDPFRRREEYL 96
Query: 737 RISGYC---EQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY 793
R G + V L+L EI AE ++ + + ++L+G
Sbjct: 97 RSIGLVMGQKLQLWWDLPALDSLEV-----LKLIYEIPDDEFAERLDFLTEILDLEGF-- 149
Query: 794 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET- 852
+ P V LS QR R +A L+ P ++F+DEPT GLD A A + +K E
Sbjct: 150 --LKWP-VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEER 206
Query: 853 GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891
TV+ T H DI D +L+ + G++++ G L Q
Sbjct: 207 QATVLLTTHIFD-DI-ATLCDRVLLIDQGQLVFDGTLAQ 243
|
Length = 325 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 32/226 (14%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFA-RI 738
L D++ G L AL+G SG+GKTTL+ +++G + G I GG R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD--SGTILFGGEDATDVPVQERN 75
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEF---VNEVLQTIELDGI--KY 793
G+ Q+ ++TV ++V F LR+ P + +AE V+E+L+ ++LD + +Y
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY 133
Query: 794 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNV-VET 852
+ LS QR+R+ +A L P ++ +DEP LDA+ + R ++ + E
Sbjct: 134 P-------AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL 186
Query: 853 GRTVVCTIHQPSIDIFEAFD--DLILMKNGGRI--------IYSGP 888
T V H D EA + D +++ N GRI +Y P
Sbjct: 187 HVTTVFVTH----DQEEALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 3e-14
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 26/210 (12%)
Query: 686 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR-----ISG 740
TF G +TA++G SG+GK+TL+++++G +T G + I G V T A +S
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLING---VDVTAAPPADRPVSM 74
Query: 741 YCEQNDIHSPNITVEESVIF--SAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
++N++ ++TVE++V S L+L+ E + + L + L G+ L
Sbjct: 75 LFQENNLF-AHLTVEQNVGLGLSPGLKLTAE-----DRQAIEVALARVGLAGL---EKRL 125
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRAVKNVVETGRTVV 857
PG LS +R+R+ +A LV + ++ +DEP + LD A A ++ + ET TV+
Sbjct: 126 PGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVL 183
Query: 858 CTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
HQP D ++ + N GRI G
Sbjct: 184 MVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 3e-14
Identities = 53/214 (24%), Positives = 101/214 (47%), Gaps = 24/214 (11%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII---EGDIRIGGYPKVQHT 734
L DI+ + G + L+G +GAGKTT + ++ G II G++ G P
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG-----IILPDSGEVLFDGKPLDIAA 68
Query: 735 FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTK--AEFVNEVLQTIELDGIK 792
RI GY + P + V + +++ A L+ LK + ++E L+ +EL
Sbjct: 69 RNRI-GYLPEERGLYPKMKVIDQLVYLAQLK-----GLKKEEARRRIDEWLERLELSEYA 122
Query: 793 YSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET 852
V LS ++++ ++ +P ++ +DEP SGLD ++ ++ +
Sbjct: 123 NK-----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA 177
Query: 853 GRTVVCTIHQPSIDIFEAF-DDLILMKNGGRIIY 885
G+TV+ + HQ +++ E D ++L+ G ++Y
Sbjct: 178 GKTVILSTHQ--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 5e-14
Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 40/232 (17%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTF 735
K ++L + T + G + A+MG +G+GK+TL + G + EG+I G
Sbjct: 16 KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDG-------- 67
Query: 736 ARISGYCEQNDIHSPNITVEESV---IFSAW--------------LRLSPEIDLKTKA-- 776
DI ++ +E IF A+ LR + +
Sbjct: 68 ---------EDI--LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGIL 116
Query: 777 -EFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
EF+ E+ + EL G+ + G S ++KR I L+ P + +DEP SGLD
Sbjct: 117 PEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176
Query: 836 ARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
A IV + + E GR V+ H + + D + ++ + GRI+ SG
Sbjct: 177 IDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYD-GRIVKSG 227
|
Length = 251 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 6e-14
Identities = 76/254 (29%), Positives = 119/254 (46%), Gaps = 62/254 (24%)
Query: 656 DVQY-YVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK 714
D++Y Y D A+K F +K G + AL+G +GAGK+TL +G
Sbjct: 6 DLKYSYPDGTEALKGINFKAEK-------------GEMVALLGPNGAGKSTLFLHFNG-- 50
Query: 715 TGGIIE---GDIRIGGYP---------KVQHTFARISGYCEQN---DIHSPNITVEESVI 759
I++ G++ I G P +V+ T G QN + +P TVEE V
Sbjct: 51 ---ILKPTSGEVLIKGEPIKYDKKSLLEVRKTV----GIVFQNPDDQLFAP--TVEEDVA 101
Query: 760 FSAW-LRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSG-----LSTEQRKRLT 813
F L LS E +++ + V E L+ VG+ G LS Q+KR+
Sbjct: 102 FGPLNLGLSKE-EVEKR---VKEALKA----------VGMEGFENKPPHHLSGGQKKRVA 147
Query: 814 IAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDD 873
IA L P II +DEPTSGLD A+ +M+ + ++ + G T++ + H +D+ + D
Sbjct: 148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHD--VDLVPVYAD 205
Query: 874 LILMKNGGRIIYSG 887
+ + + G+II G
Sbjct: 206 KVYVMSDGKIIKEG 219
|
Length = 275 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 7e-14
Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 32/198 (16%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYP---KVQH 733
L ++ PG A++G SG+GK+TL+ L+G +++ G++ + G P Q
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAG-----LLDPLQGEVTLDGVPVSSLDQD 405
Query: 734 TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL----- 788
R C Q D H + TV E++ + P+ T E + L+ + L
Sbjct: 406 EVRRRVSVCAQ-DAHLFDTTVRENLRLAR-----PDA---TDEE-LWAALERVGLADWLR 455
Query: 789 ---DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 845
DG+ L G + LS +R+RL +A L+A+ I+ +DEPT LDA A ++
Sbjct: 456 ALPDGLDTVLGE--GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLED 513
Query: 846 VKNVVETGRTVVCTIHQP 863
+ +GRTVV H
Sbjct: 514 L-LAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 9e-14
Identities = 57/237 (24%), Positives = 96/237 (40%), Gaps = 50/237 (21%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ---KTSAYISQYDLHIA 60
+LG G GK+TLL L+G L SGEV +G + P+ K AY+ Q
Sbjct: 33 ILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
+TV E + L G +P ++ E
Sbjct: 90 GLTVYELV------------------------LLGRYP------HLGLFGRPSKEDEEIV 119
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
+ L++LGL+ AD V + +SGG+++R+ + T L +DE ++ LD +
Sbjct: 120 EEALELLGLEHLADRPVDE-----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQ 174
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLF----DDVMLMAEGKIVYHGPRSYI 233
+++ L+ L T ++ L +L D ++L+ +GKIV G +
Sbjct: 175 IEVLELLRDLNREKGLTVVMVLHDL-----NLAARYADHLILLKDGKIVAQGTPEEV 226
|
Length = 258 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 9e-14
Identities = 57/228 (25%), Positives = 91/228 (39%), Gaps = 37/228 (16%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---------------RKTGGIIEGDI 723
+L D++ PG A++G +GAGKTTL+ +L+G G I ++
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIF-EL 104
Query: 724 RIGGYPKVQHTFARISGYC--EQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNE 781
R RI G E ++ TV + V+ S + AE +
Sbjct: 105 R-----------KRI-GLVSSELHERFRVRETVRDVVL-SGFFASIGIYQEDLTAEDLAA 151
Query: 782 VLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD--ARAA 839
+EL G K L P LS +++R+ IA LV +P ++ +DEP GLD AR
Sbjct: 152 AQWLLELLGAK-HLADRP-FGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQ 209
Query: 840 AIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ ++ H +I F +L+K G ++ G
Sbjct: 210 LLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKE-GEVVAQG 255
|
Length = 257 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 9e-14
Identities = 45/197 (22%), Positives = 84/197 (42%), Gaps = 41/197 (20%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 737
D++ + + G + AL+G +GAGK+TLM +L G + G+IR+ G R
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD----SGEIRVDGKE------VR 69
Query: 738 ISGYCEQND--------IHS-----PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQ 784
I D +H P +TV E++I ID + + E+ +
Sbjct: 70 IKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSE 126
Query: 785 ----TIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
++ D V+ LS +++R+ I L ++ +DEPT+ L + A
Sbjct: 127 RYGLPVDPDAK---------VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEAD 177
Query: 841 IVMRAVKNVVETGRTVV 857
+ ++ + G+T++
Sbjct: 178 ELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 9e-14
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFA 736
L SD++ T G + G +GAGKTTL+ +L+G R G E + V+ ++
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAG--EVYWQGEPIQNVRESYH 74
Query: 737 RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLV 796
+ Y +T E++ F W R + A + E L + L G++
Sbjct: 75 QALLYLGHQPGIKTELTALENLHF--WQRFHGSGN----AATIWEALAQVGLAGLED--- 125
Query: 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTV 856
LP V LS Q++R+ +A ++ + +DEP + LD A++ + G V
Sbjct: 126 -LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIV 183
Query: 857 VCTIHQP 863
+ T HQP
Sbjct: 184 LLTTHQP 190
|
Length = 209 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-13
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
+T L+G G GKTTLL L+G+ + ++GE+ NG LD+ Q+++ Y+ Q D+H
Sbjct: 35 LTALMGESGAGKTTLLDVLAGR-KTAGVITGEILINGRPLDKNF-QRSTGYVEQQDVHSP 92
Query: 61 EMTVRETIDFSARCQG 76
+TVRE + FSA +G
Sbjct: 93 NLTVREALRFSALLRG 108
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-13
Identities = 65/220 (29%), Positives = 100/220 (45%), Gaps = 36/220 (16%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV-QHTFARI 738
L DI+ R G + ALMG +GAGK+TL+ +LSG G I I G T A +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAAL 77
Query: 739 -SG----YCEQNDIH-SPNITVEESVIFSAWLRLSPE----IDLKTKAEFVNEVLQTIEL 788
+G Y E +H P +TV E++ +L P ++ + E L+ + +
Sbjct: 78 AAGVAIIYQE---LHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQLEHLGV 130
Query: 789 D-----GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 843
D +KY LS QR+ + IA L N +I DEPTS L AR +
Sbjct: 131 DIDPDTPLKY----------LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLF 180
Query: 844 RAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883
R ++ + GR ++ H+ +IF D + + K+G +
Sbjct: 181 RVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYV 219
|
Length = 501 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 1e-13
Identities = 58/217 (26%), Positives = 91/217 (41%), Gaps = 48/217 (22%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 737
++L + T + G + ALMG +G+GK+TL + G + EG+I G
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG---------- 63
Query: 738 ISGYCEQNDIHSPNITVEESV---IFSAWLRLSPEIDLKTKAEF---VNEVLQTIELDGI 791
DI ++ EE IF A+ PEI A+F VNE
Sbjct: 64 -------EDI--TDLPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE---------- 103
Query: 792 KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE 851
G S ++KR I L+ P + +DEP SGLD A +V + + E
Sbjct: 104 -----------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE 152
Query: 852 TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
G++V+ H + + D + ++ + GRI+ SG
Sbjct: 153 EGKSVLIITHYQRLLDYIKPDRVHVLYD-GRIVKSGD 188
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 2e-13
Identities = 54/240 (22%), Positives = 101/240 (42%), Gaps = 40/240 (16%)
Query: 673 NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGG-- 727
+ ++ + ++ + G + ++G SG+GK+ L + G + I+ G+I G
Sbjct: 14 DAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKD 73
Query: 728 --------YPKVQHTFARISGYCEQNDIHS--PNITVEESVIFSAWLRLSPEIDLKTKAE 777
K++ I+ Q+ + S P +T+ + + L +K E
Sbjct: 74 LLSLSEKELRKIRGK--EIA-MIFQDPMTSLNPVMTIGDQIAEVLRLHGK----GLSKKE 126
Query: 778 FVNEVLQTIELDGIKYSLVGLPGVSG--------LSTEQRKRLTIAVELVANPSIIFMDE 829
++ +EL VG+P LS R+R+ IA+ L NP ++ DE
Sbjct: 127 AKERAIELLEL-------VGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADE 179
Query: 830 PTSGLDARAAAIVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
PT+ LD A ++ +K + E G ++ H + + E D + +M GRI+ GP
Sbjct: 180 PTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMY-AGRIVEEGP 237
|
Length = 316 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 66/214 (30%), Positives = 92/214 (42%), Gaps = 30/214 (14%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG------YPKVQH 733
L D+ G L+G SG GKTT + +++G + G I IGG PK
Sbjct: 16 LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPK--- 70
Query: 734 TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY 793
R QN P++TV +++ F LR P K E V + EL I++
Sbjct: 71 --DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVP------KDEIDERVREVAELLQIEH 122
Query: 794 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA--VKNVVE 851
L P LS QR+R+ + +V P + MDEP S LDA+ + MRA +
Sbjct: 123 LLDRKP--KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK-LRVQMRAELKRLQQR 179
Query: 852 TGRTVVCTIHQPSIDIFEAFD--DLILMKNGGRI 883
G T + H D EA D I + N G+I
Sbjct: 180 LGTTTIYVTH----DQVEAMTMADRIAVMNDGQI 209
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 27/204 (13%)
Query: 694 ALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYPKVQ---HTFARISGYCEQN-- 745
A++G +GAGK+TL R GI++ G + I G P + + G QN
Sbjct: 34 AVIGPNGAGKSTLF-----RHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPD 88
Query: 746 -DIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGL 804
I SP TVE+ + F ++ +D +T A V+ L + G++ +P L
Sbjct: 89 DQIFSP--TVEQDIAFGP---INLGLDEETVAHRVSSALHML---GLEELRDRVP--HHL 138
Query: 805 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQP 863
S ++KR+ IA + P ++ +DEPT+GLD + ++ + ++ ET G TV+ + HQ
Sbjct: 139 SGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ- 197
Query: 864 SIDIFEAFDDLILMKNGGRIIYSG 887
+D+ D I + + GRI+ G
Sbjct: 198 -LDLVPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 67/215 (31%), Positives = 106/215 (49%), Gaps = 32/215 (14%)
Query: 686 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT----FAR-ISG 740
T G + A++G SGAGK+TL+++++G +T G+I I G V HT R +S
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILING---VDHTASPPAERPVSM 75
Query: 741 YCEQNDIHSPNITVEESVIF--SAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
++N++ + ++TV +++ S L+L+ E + E V + L G L L
Sbjct: 76 LFQENNLFA-HLTVAQNIGLGLSPGLKLNAE-----QREKVEAAAAQVGLAGF---LKRL 126
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRAVKNVV--ETGR 854
PG LS QR+R+ +A LV I+ +DEP S LD RA M A+ + + E
Sbjct: 127 PGE--LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKM 181
Query: 855 TVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889
T++ H P D D ++ + N GRI G
Sbjct: 182 TLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 3e-13
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 143 RGVSGGQKKRLTTG-ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALIS 201
RG+S Q+KRLT G EL P+ LF+DE ++GLDS + IV FLK L + L +
Sbjct: 107 RGLSVEQRKRLTIGVELAAKPS-ILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCT 164
Query: 202 LLQPAPETFDLFDDVMLMAE-GKIVYHG 228
+ QP+ F+ FD ++L+ GK VY G
Sbjct: 165 IHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 3e-13
Identities = 52/232 (22%), Positives = 88/232 (37%), Gaps = 58/232 (25%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ---KTSAYISQY-D 56
L++G G GK+TLL L+G L SGEV +G L + + + + Q D
Sbjct: 29 FVLIVGPNGSGKSTLLRLLNGLL---GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPD 85
Query: 57 LHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEK 116
TV E + F + +E+ +
Sbjct: 86 DQFFGPTVEEEVAFGLE-----NLGLPEEEIEER-------------------------- 114
Query: 117 NLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLD 176
+ L+++GL+ D +SGGQK+R+ ++ L +DE + GLD
Sbjct: 115 ---VEEALELVGLEGLRDRSPFT-----LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLD 166
Query: 177 SSTTFQIVSFLKHLVHITDATALIS-----LLQPAPETFDLFDDVMLMAEGK 223
+ +++ LK L T +I LL +L D V+++ +GK
Sbjct: 167 PAGRRELLELLKKL-KAEGKTIIIVTHDLDLL------LELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 3e-13
Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 14/217 (6%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG--IIEGDIRIGGYPKVQH 733
+ L D++ + + G L+G SG+GK+TL + G + T G I +G + +++
Sbjct: 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRK 78
Query: 734 TFARISGYCEQNDIHS--PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI 791
+ Q+ + S P +T+ E + + + + E V +L + L
Sbjct: 79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH-GKLSKKEARKEAVLLLLVGVGLPEE 137
Query: 792 KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNV-V 850
+ P LS QR+R+ IA L NP ++ DEPTS LD A ++ +K +
Sbjct: 138 VLNR--YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQE 193
Query: 851 ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
E G T++ H + A D + +M G+I+ G
Sbjct: 194 ELGLTLLFITHDLGVVAKIA-DRVAVMY-AGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-13
Identities = 73/262 (27%), Positives = 112/262 (42%), Gaps = 39/262 (14%)
Query: 638 PKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMG 697
+M LP L+ E + P KK +L I+ + G ++G
Sbjct: 321 AAAERMPLPAPQGALSVERLTA---APPGQKKP--------ILKGISFALQAGEALGIIG 369
Query: 698 VSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNI 752
SG+GK+TL +L G T G +R+ G Q R GY Q D+ +
Sbjct: 370 PSGSGKSTLARLLVGIWPPTSG----SVRLDGADLRQWDREQLGRHIGYLPQ-DVELFDG 424
Query: 753 TVEESVIFSAWLRLSPEIDLK-----TKAEFVNEVLQTIELDGIKY-SLVGLPGVSGLST 806
T+ E++ R E D + + V+E++ + G Y + +G G + LS
Sbjct: 425 TIAENIA-----RFGEEADPEKVIEAARLAGVHELILRLP-QG--YDTRIG-EGGATLSG 475
Query: 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSID 866
QR+R+ +A L +P ++ +DEP S LD+ A + A+ G TVV H+PS
Sbjct: 476 GQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSA- 534
Query: 867 IFEAFDDLILMKNGGRIIYSGP 888
A D IL+ GRI GP
Sbjct: 535 --LASVDKILVLQDGRIAAFGP 554
|
Length = 580 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 4e-13
Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 20/180 (11%)
Query: 688 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS------GY 741
RPG L+GV+GAGKTT +L+G T + GD + G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 742 CEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801
C Q D +T E + A LR P +++ A N +Q++ L L G
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVA---NWSIQSLGLSLYADRLAGT--- 2070
Query: 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIH 861
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ + +++ GR VV T H
Sbjct: 2071 --YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 4e-13
Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 34/222 (15%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTF 735
+L I T + G + ++G SG+GK+TL+ ++ + G I I G K+
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGL-KLTDDK 68
Query: 736 ARIS------GYCEQNDIHSPNITVEESVIFS-AWLRLSPEIDLKTKAEFVNEVLQTIEL 788
I+ G Q P++TV E++ + ++ + + + +A E+L+
Sbjct: 69 KNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERAL---ELLE---- 121
Query: 789 DGIKYSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 843
VGL + LS Q++R+ IA L NP ++ DEPTS LD V+
Sbjct: 122 ------KVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVL 175
Query: 844 RAVKNVVETGRTVVCTIHQPSIDIF--EAFDDLILMKNGGRI 883
+K++ E G T+V H+ F E D +I M + GRI
Sbjct: 176 DVMKDLAEEGMTMVVVTHEMG---FAREVADRVIFM-DDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 6e-13
Identities = 63/215 (29%), Positives = 111/215 (51%), Gaps = 21/215 (9%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFA--- 736
L DI+ G AL+G SG+GK+TL++++ + + G I I G+ +T A
Sbjct: 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDYTLASLR 75
Query: 737 RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKA----EFVNEVLQTIELDGIK 792
R G Q D+ N TV E++ + E++ +A EF+ E+ + +
Sbjct: 76 RQIGLVSQ-DVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYD----- 129
Query: 793 YSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET 852
+++G GV LS QR+R+ IA L+ +P I+ +DE TS LD + +V A++ +++
Sbjct: 130 -TVIGERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK- 186
Query: 853 GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
RT H+ S I A D ++++++ G+I+ G
Sbjct: 187 NRTTFVIAHRLST-IENA-DRIVVLED-GKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 7e-13
Identities = 57/237 (24%), Positives = 92/237 (38%), Gaps = 54/237 (22%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP----QKTSAYISQY- 55
LL+G G GK+TLL L+G L + SGEV +G ++ + Q
Sbjct: 32 RVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNP 88
Query: 56 DLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLE 115
D + TV + + F G + ++E +
Sbjct: 89 DDQLFGPTVEDEVAFGLE--NLGLPREEIEERVA-------------------------- 120
Query: 116 KNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT-TGELIVGPTRALFMDEISNG 174
L+++GL+ D +SGGQK+R+ G L +GP L +DE + G
Sbjct: 121 ------EALELVGLEELLDR-----PPFNLSGGQKQRVAIAGVLAMGP-EILLLDEPTAG 168
Query: 175 LDSSTTFQIVSFLKHLVHITDATALIS--LLQPAPETFDLFDDVMLMAEGKIVYHGP 229
LD +++ LK L T +I L+ E D V+++ +GKI+ G
Sbjct: 169 LDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLE---YADRVVVLDDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 66/225 (29%), Positives = 97/225 (43%), Gaps = 28/225 (12%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTL---MDVLSGRKTGGIIEGDIRIGGYPKVQHT 734
+L I +PG + A++G SG+GKTTL +++L + G I GDI I +
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 735 FARIS------GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL 788
I G+ QN P+ TV E++I P I E +
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENII------EGPVIVKGEPKE------EATAR 124
Query: 789 DGIKYSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 843
+ VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 125 ARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 844 RAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
++ + + RT+V H+ S + D I M + GRI+ GP
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMSF-ARDVADRAIFM-DQGRIVEQGP 227
|
Length = 250 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-12
Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 18/209 (8%)
Query: 665 SAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR 724
K G + +L +L + + G A++G SG+GK+TL+ VL+G G++R
Sbjct: 11 HLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVR 68
Query: 725 IGGYP-------KVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAE 777
+ G P AR G+ Q+ PN+T E+V LR D + A+
Sbjct: 69 LLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAK 128
Query: 778 FVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837
+L+ + G+ L P LS +++R+ +A P ++F DEPT LD
Sbjct: 129 ---ALLEAV---GLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180
Query: 838 AAAIVMRAVKNVV-ETGRTVVCTIHQPSI 865
+ + + E G T+V H P +
Sbjct: 181 TGDKIADLLFALNRERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-12
Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 21/209 (10%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE--GDIRIGGYPKVQ---HT 734
L I+ + + G A++G SG+GK+TL ++ G G +R+ G Q T
Sbjct: 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLI----VGIWPPTSGSVRLDGADLKQWDRET 389
Query: 735 FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPE---IDLKTKAEFVNEVLQTIELDGI 791
F + GY Q D+ TV E++ A + + I K V+E++ + DG
Sbjct: 390 FGKHIGYLPQ-DVELFPGTVAENI---ARFGENADPEKIIEAAKLAGVHELILRLP-DG- 443
Query: 792 KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE 851
Y V PG + LS QR+R+ +A L +P ++ +DEP S LD + A+K +
Sbjct: 444 -YDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA 502
Query: 852 TGRTVVCTIHQPSIDIFEAFDDLILMKNG 880
G TVV H+PS + D ++++++G
Sbjct: 503 RGITVVVITHRPS--LLGCVDKILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 67/246 (27%), Positives = 114/246 (46%), Gaps = 37/246 (15%)
Query: 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLM---- 707
+ FE+V + ++ + +L D++ T G A++G SG+GK+T++
Sbjct: 1 IEFENVTF-----------AYDPGR-PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF 48
Query: 708 ---DVLSGRKTGGIIEG-DIRIGGYPKV-QHTFARISGYCEQNDIHSPNITVEESVIFSA 762
DV SG I+G DIR +V + R G Q D N T+ ++ +
Sbjct: 49 RFYDVSSGSIL---IDGQDIR-----EVTLDSLRRAIGVVPQ-DTVLFNDTIGYNIRYGR 99
Query: 763 WLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANP 822
E+ KA +++ + DG ++VG G+ LS +++R+ IA ++ NP
Sbjct: 100 PDATDEEVIEAAKAAQIHDKIMRFP-DGYD-TIVGERGLK-LSGGEKQRVAIARAILKNP 156
Query: 823 SIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882
I+ +DE TS LD + A+++V GRT + H+ S I A D I++ GR
Sbjct: 157 PILLLDEATSALDTHTEREIQAALRDVS-KGRTTIVIAHRLS-TIVNA--DKIIVLKDGR 212
Query: 883 IIYSGP 888
I+ G
Sbjct: 213 IVERGT 218
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 29/171 (16%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG--IIEGDIRIGGYPKVQHTF 735
L+D++ + PG L L+G +GAGKTTLMDV++G R G + +GD + P +H
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP--EHRI 78
Query: 736 ARISGYCEQNDIHS--PNITVEE----------SVIFSAWLRLSPEIDLKTKAEFVNEVL 783
AR G + + N+TV E SV S + RL E + ++E+L
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAE-----ERRRIDELL 132
Query: 784 QTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834
TI L + L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 133 ATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 2e-12
Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 31/225 (13%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--- 732
++L I+ + G + ++G SG+GK+TL+ L+G + G I + G
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKD 71
Query: 733 -HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI 791
R G Q P++TV E+V L+P K E +
Sbjct: 72 ILKLRRKVGMVFQQFNLFPHLTVLENVT------LAPVKVKKLSKAEAREK-------AL 118
Query: 792 KY-SLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 845
+ VGL + LS Q++R+ IA L +P ++ DEPTS LD V+
Sbjct: 119 ELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDV 178
Query: 846 VKNVVETGRTVVCTIHQPSIDIF--EAFDDLILMKNGGRIIYSGP 888
+K++ E G T++ H+ F E D +I M + G+II GP
Sbjct: 179 MKDLAEEGMTMIIVTHEMG---FAREVADRVIFM-DQGKIIEEGP 219
|
Length = 240 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 27/219 (12%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARI 738
+L +I+ +PG + ++G SG+GK+TL ++ G + + G H A
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE--NGRVLVDG-----HDLALA 69
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIK------ 792
+ + + ++E+V+F+ +R I L + V++ +L G
Sbjct: 70 DPAWLRRQV---GVVLQENVLFNRSIR--DNIALADPGMSMERVIEAAKLAGAHDFISEL 124
Query: 793 ---Y-SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKN 848
Y ++VG G GLS QR+R+ IA L+ NP I+ DE TS LD + +MR + +
Sbjct: 125 PEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHD 183
Query: 849 VVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ GRTV+ H+ S + A D I++ GRI+ G
Sbjct: 184 ICA-GRTVIIIAHRLST-VKNA--DRIIVMEKGRIVEQG 218
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 28/222 (12%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH--TFAR 737
L ++ + G L+G SG GKTTL+ +++G +T G+I + G + + R
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKD-ITNLPPHKR 72
Query: 738 ISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVG 797
QN P++TV E++ F L+ P+ ++K + V E L ++L+G
Sbjct: 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKER---VAEALDLVQLEGYANRKP- 128
Query: 798 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNV-VETGRTV 856
S LS Q++R+ IA LV P ++ +DEP LD + + +K + E G T
Sbjct: 129 ----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITF 184
Query: 857 VCTIHQPSIDIFEAF--DDLILMKNGGRI--------IYSGP 888
V H D EA D I + N G+I IY P
Sbjct: 185 VFVTH----DQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 3e-12
Identities = 67/260 (25%), Positives = 124/260 (47%), Gaps = 29/260 (11%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK-VQHTFAR 737
+++D++ T G L+G +GAGK+T+ +L G + G I + G P + AR
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLAR 76
Query: 738 IS-GYCEQNDIHSPNITVEESV-IFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSL 795
++ G Q D P TV E++ +F + +S + + +L+ L+ S
Sbjct: 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMST----REIEAVIPSLLEFARLE----SK 128
Query: 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRT 855
+ V+ LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +++++ G+T
Sbjct: 129 ADVR-VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKT 187
Query: 856 VVCTIHQPSIDIFEAF----DDLILMKNGGRIIYSGPLG----QHSCKVIDYFESIPGVL 907
++ T H E D L ++++G +I P Q C VI+ + P L
Sbjct: 188 ILLTTH-----FMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIEIYGGDPDEL 242
Query: 908 KIKDNYNPATWMLEVSSSSI 927
+ P +EVS ++
Sbjct: 243 REL--IRPYARRIEVSGETL 260
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 12/186 (6%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG-IIEGDIRIGGYPKVQHTFA 736
L D++ G L G SGAGK+TL+ ++ G R T G I+ + + F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 737 RIS-GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSL 795
R G Q+ P+ TV E+V + K E V + ++L G+K+
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALPL------RVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRT 855
LP S LS +++R+ IA +V P+++ DEPT LD + +MR + + G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 856 VVCTIH 861
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 3e-12
Identities = 72/264 (27%), Positives = 115/264 (43%), Gaps = 48/264 (18%)
Query: 639 KRGKMVLPFEPLTLTFEDV--QYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALM 696
G LP +TFE++ +Y D+P ++LS++ +PG ++
Sbjct: 443 SAGLAALPELRGAITFENIRFRYAPDSP-------------EVLSNLNLDIKPGEFIGIV 489
Query: 697 GVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNIT 753
G SG+GK+TL +L T G + + G R G +
Sbjct: 490 GPSGSGKSTLTKLLQRLYTPQ--HGQVLVDGVDLAIADPAWLRRQMG-----------VV 536
Query: 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP----------GVSG 803
++E+V+FS +R I L V+ +L G + LP G
Sbjct: 537 LQENVLFSRSIR--DNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGA-N 593
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQP 863
LS QR+R+ IA LV NP I+ DE TS LD + A++MR ++ + GRTV+ H+
Sbjct: 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR-GRTVIIIAHR- 651
Query: 864 SIDIFEAFDDLILMKNGGRIIYSG 887
+ A D +I+++ G+I SG
Sbjct: 652 -LSTVRACDRIIVLEK-GQIAESG 673
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 3e-12
Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 46/216 (21%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFA 736
L DI G L A++G G+GK++L+ L G K G + V + A
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVS----------VPGSIA 69
Query: 737 RISGYCEQNDIHSP---NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL----- 788
Y Q P N T+ E+++F D E +V++ L
Sbjct: 70 ----YVSQ----EPWIQNGTIRENILFGK------PFD----EERYEKVIKACALEPDLE 111
Query: 789 ---DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVMR 844
DG + +G G++ LS Q++R+++A + ++ I +D+P S +DA I
Sbjct: 112 ILPDGDL-TEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEN 169
Query: 845 AVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880
+ ++ +T + HQ + + D ++++ NG
Sbjct: 170 CILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 4e-12
Identities = 62/207 (29%), Positives = 93/207 (44%), Gaps = 28/207 (13%)
Query: 695 LMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFA--RISGYCEQNDIHSPNI 752
L+G SG GKTTL+ +L+G + G I + G V + R Q+ P++
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDG-EDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 753 TVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRL 812
TVEE+V F +R P ++K + V E L+ ++L+ LS Q++R+
Sbjct: 58 TVEENVAFGLKMRKVPRAEIKPR---VLEALRLVQLEEF-----ADRKPHQLSGGQQQRV 109
Query: 813 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAF 871
+A LV P I+ +DEP S LD + + +K + E G T V H D EA
Sbjct: 110 ALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH----DQEEAM 165
Query: 872 --DDLILMKNGGRI--------IYSGP 888
D I + G+I IY P
Sbjct: 166 TMSDRIAIMRKGKIAQIGTPEEIYEEP 192
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 4e-12
Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 14/191 (7%)
Query: 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE-GDIRIGGYPKV 731
K ++++ ++ + + G + L+G +GAGKTT ++ G + G I I P
Sbjct: 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLP-- 68
Query: 732 QHTFARIS-GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG 790
H AR+ GY Q +TVEE+ + EI +K E ++ + +E
Sbjct: 69 MHKRARLGIGYLPQEASIFRKLTVEEN------ILAVLEIRGLSKKEREEKLEELLEEFH 122
Query: 791 IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV 850
I L S LS +R+R+ IA L NP + +DEP +G+D A + + +K +
Sbjct: 123 IT-HLRKSKASS-LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILK 180
Query: 851 ETGRTVVCTIH 861
+ G V+ T H
Sbjct: 181 DRGIGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 4e-12
Identities = 64/223 (28%), Positives = 98/223 (43%), Gaps = 27/223 (12%)
Query: 681 SDITGTFRPGILTALMGVSGAGKTTLMDVLSGR--KTGGIIEGDIRIGGYPKVQH----- 733
D++ PG + ++G SG+GKTTL+ +SGR G + +R G +
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 734 --TFARIS-GYCEQNDIHSPNITVEESV-----IFSAWLRLSPEIDLKTKAEFVNEVLQT 785
R G+ QN + V + + R I +++ EV
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIR-AEAQDWLEEV--E 139
Query: 786 IELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 845
I+LD I LP S ++RL IA LV P ++FMDEPT GLD A ++
Sbjct: 140 IDLDRID----DLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDL 193
Query: 846 VKN-VVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
++ V E G VV H ++ A D L++MK G+++ SG
Sbjct: 194 LRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMK-QGQVVESG 234
|
Length = 258 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 4e-12
Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 19/164 (11%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK------TGGIIEGDIRIGGYPKVQ 732
LL+++ T G + LMG SG GK+TL+ + G TG + + R+ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 733 HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIK 792
R G Q+ + P+++V ++++F+ L + + N L+ LDG
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 793 YSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 836
+ P + LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQ---DP--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 4e-12
Identities = 62/241 (25%), Positives = 105/241 (43%), Gaps = 38/241 (15%)
Query: 672 FNQK---KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRI 725
F++K +L L++I+ TF + ++G SG+GK+TL+ +G K G I GDI I
Sbjct: 31 FDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYI 90
Query: 726 GGYPKVQHTFARISGYCEQNDIHS--------------PNI-----TVEESVIFSAWLRL 766
G K + I + P T+E+ ++F
Sbjct: 91 G--DKKN--NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALG 146
Query: 767 SPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 826
+ + K A+F + G+ S + GLS Q++R+ IA L P I+
Sbjct: 147 VKKSEAKKLAKFYLNKM------GLDDSYLERSPF-GLSGGQKRRVAIAGILAIQPEILI 199
Query: 827 MDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886
DEPT+GLD + +M+ + + +TV H + E D++I+M G+I+ +
Sbjct: 200 FDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDK-GKILKT 257
Query: 887 G 887
G
Sbjct: 258 G 258
|
Length = 320 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 74/217 (34%), Positives = 112/217 (51%), Gaps = 29/217 (13%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTF 735
+L D++ T PG +TAL+G SG+GK+T++ +L + GG + D G P
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLD----GKP------ 77
Query: 736 ARISGYCEQNDIHSPNITV-EESVIFSAWLRLSPEIDLKTKA-EFVNEVLQTI------- 786
IS Y E +HS V +E V+F+ L+ + L++ + E V E Q
Sbjct: 78 --ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFIS 134
Query: 787 ELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 846
EL + VG G S LS Q++R+ IA L+ NP ++ +DE TS LDA + V +A+
Sbjct: 135 ELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQAL 193
Query: 847 KNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883
+ E RTV+ H+ S + A D IL+ +GGRI
Sbjct: 194 YDWPER-RTVLVIAHRLST-VERA--DQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 7e-12
Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 25/221 (11%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGGYPKVQ 732
K Q+L ++ T G + AL+G +GAGKTTL+ + G ++G I I G P
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLP--P 69
Query: 733 HTFARIS-GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTI-ELDG 790
H AR GY + P +TVEE+++ A+ R + + V + L
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRK-----ARLERVYELFPRLKE 124
Query: 791 IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV 850
+ L G LS +++ L IA L++ P ++ +DEP+ GL + + A++ +
Sbjct: 125 RRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR 179
Query: 851 ETGRTVVCTIHQPSIDIFEAF---DDLILMKNGGRIIYSGP 888
+ G T++ + Q + A D +++ GR++ G
Sbjct: 180 DEGVTIL-LVEQ---NARFALEIADRAYVLER-GRVVLEGT 215
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 7e-12
Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 31/213 (14%)
Query: 689 PGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE------GDIRIGGYPKVQHTFARISG 740
GI TAL G SG+GKT+L+++++G R G IE D G + + R G
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK---RRIG 79
Query: 741 YCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG 800
Y Q+ P+ TV ++ + W + + D Q + L GI++ L PG
Sbjct: 80 YVFQDARLFPHYTVRGNLRYGMWKSMRAQFD------------QLVALLGIEHLLDRYPG 127
Query: 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV-ETGRTVVCT 859
LS +++R+ I L+ P ++ MDEP + LD ++ ++ + E ++
Sbjct: 128 T--LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV 185
Query: 860 IHQPSID-IFEAFDDLILMKNGGRIIYSGPLGQ 891
H S+D + D +++++N G++ SGPL +
Sbjct: 186 SH--SLDEVLRLADRVVVLEN-GKVKASGPLEE 215
|
Length = 352 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 8e-12
Identities = 56/248 (22%), Positives = 103/248 (41%), Gaps = 36/248 (14%)
Query: 649 PLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMD 708
L +V + + ++ + L + T G A++G SG+GK+TL+
Sbjct: 334 GQALELRNVSF-----------TYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQ 382
Query: 709 VLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSP 768
+L+G +G I + G I+ EQ + ++ + +FS LR +
Sbjct: 383 LLAGAWD--PQQGSITLNGVE--------IASLDEQALRETISVLTQRVHLFSGTLRDNL 432
Query: 769 EIDLKTKA-EFVNEVLQTIEL------DGIKY-SLVGLPGVSGLSTEQRKRLTIAVELVA 820
+ + E + LQ + L + +G G LS +R+RL +A L+
Sbjct: 433 RLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGG-RRLSGGERRRLALARALLH 491
Query: 821 NPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVV-CTIHQPSIDIFEAFDDLILMKN 879
+ + +DEPT GLD V+ + E G+T++ T ++ D I++ +
Sbjct: 492 DAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRGLERM----DRIIVLD 546
Query: 880 GGRIIYSG 887
G+II G
Sbjct: 547 NGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 9e-12
Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 48/195 (24%)
Query: 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLH 58
T L+G G GK+TLL+ L G L+ + GE+ NG L + P +K +++SQ + +
Sbjct: 350 TALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQ-NPY 405
Query: 59 IAEMTVRETIDFSARCQGTGHRADS---MKEVIKLEKLAGIFPDPDVDAYMKAISVEGLE 115
+ T+RE I S + + L P PD GL
Sbjct: 406 LFAGTIRENILL-------ARPDASDEEIIAALDQAGLLEFVPKPD-----------GL- 446
Query: 116 KNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGL 175
DT++G+ G+SGGQ +RL ++ P L +DE + L
Sbjct: 447 ------------------DTVIGEG-GAGLSGGQAQRLALARALLSPASLLLLDEPTAHL 487
Query: 176 DSSTTFQIVSFLKHL 190
D+ T I+ L+ L
Sbjct: 488 DAETEQIILQALQEL 502
|
Length = 559 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 9e-12
Identities = 60/238 (25%), Positives = 111/238 (46%), Gaps = 29/238 (12%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP---KVQHTF 735
+++ ++ T G L+G +GAGK+T+ ++ G + G I + G P + +
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLAR 113
Query: 736 ARISGYCEQNDIHSPNITVEES-VIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYS 794
ARI G Q D TV E+ ++F + +S + + +L+ L+ S
Sbjct: 114 ARI-GVVPQFDNLDLEFTVRENLLVFGRYFGMST----REIEAVIPSLLEFARLE----S 164
Query: 795 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGR 854
VS LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +++++ G+
Sbjct: 165 KADAR-VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 223
Query: 855 TVVCTIHQPSIDIFEAF----DDLILMKNGGRIIYSGPLG----QHSCKVIDYFESIP 904
T++ T H E D L +++ G +I P C+VI+ + P
Sbjct: 224 TILLTTH-----FMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIEIYGGDP 276
|
Length = 340 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-11
Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 19/217 (8%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARI 738
+L + + R G L L+G +GAGKTTL+ ++G T G + + G V+ AR
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDD-VEALSARA 74
Query: 739 SGY----CEQNDIHSPNITVEESVIFSA---WLRLSPEIDLKTKAEFVNEVLQTIELDGI 791
+ Q+ S V + V R + A V ++ +
Sbjct: 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMERTGVA-- 130
Query: 792 KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE 851
P V+ LS +R+R+ +A L ++ +DEPT+ LD + V+ +V+
Sbjct: 131 --QFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD 187
Query: 852 TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
G+T V IH +D+ + D +++ GR+ +GP
Sbjct: 188 DGKTAVAAIH--DLDLAARYCDELVLLADGRVRAAGP 222
|
Length = 402 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-11
Identities = 53/223 (23%), Positives = 87/223 (39%), Gaps = 37/223 (16%)
Query: 674 QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKV 731
+ L++++ G ++G SG+GK+TL +L+G + + G I + G P
Sbjct: 17 KFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILLDGKPLA 72
Query: 732 QHT----FARISGYCEQNDIHS--PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQT 785
F R Q+ S P TV + L + + E+L
Sbjct: 73 PKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRI-LSEPLRPHG----LSKSQQRIAELLD- 126
Query: 786 IELDGIKYSLVGLPGV------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 839
VGLP LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 127 ---------QVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ 177
Query: 840 AIVMRAVKNVVETGRTVVCTI-HQPSIDIFEAF-DDLILMKNG 880
A ++ + + + I H + + E D + +M NG
Sbjct: 178 AQILNLLLELKKERGLTYLFISHD--LALVEHMCDRIAVMDNG 218
|
Length = 252 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 27/213 (12%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 739
L DI T G L ++G SG GKTTL+++++G G I + G P R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ--HGSITLDGKPVEGPGAER-- 72
Query: 740 GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP 799
G QN+ P V+++V F L ++ A ++L+ + L+G + +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAH---QMLKKVGLEGAEKRYIW-- 127
Query: 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA----RAAAIVMRAVKNVVETGRT 855
LS QR+R+ IA L ANP ++ +DEP LDA + ++++ + ETG+
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQ---ETGKQ 181
Query: 856 VVCTIHQPSIDIFEAF---DDLILMKNG-GRII 884
V+ H DI EA +L+L+ G GR++
Sbjct: 182 VLLITH----DIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 1e-11
Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 51/234 (21%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG--IIEG---------DIRIG 726
L +++ T RPG A++G G+GK+TL+ +L G + T G +++G D+R
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLR-- 538
Query: 727 GYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTI 786
I GY Q+ +F LR I L E+L+
Sbjct: 539 ---------RNI-GYVPQD-----------PRLFYGTLR--DNIALGAPYADDEEILRAA 575
Query: 787 ELDGIK---------YSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837
EL G+ + LS QR+ + +A L+ +P I+ +DEPTS +D R
Sbjct: 576 ELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNR 635
Query: 838 AAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891
+ +K + G+T+V H+ S + + D +I+M + GRI+ GP Q
Sbjct: 636 SEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVM-DNGRIVADGPKDQ 685
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 1e-11
Identities = 55/175 (31%), Positives = 82/175 (46%), Gaps = 39/175 (22%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGY------P 729
L DI+ + + G L+G SG GKTTL+ +++G R+T G I GG P
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAG----TIYQGGRDITRLPP 73
Query: 730 KVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE-- 787
+ R G Q+ PN+TV +++ + LK + EV + +
Sbjct: 74 Q-----KRDYGIVFQSYALFPNLTVADNIAYG----------LKNRGMGRAEVAERVAEL 118
Query: 788 LDGIKYSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837
LD LVGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 119 LD-----LVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 41/187 (21%), Positives = 75/187 (40%), Gaps = 16/187 (8%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFA 736
L ++ T G + G +G GKTTL+ +L+G R G + + + +
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGT--ALAEQRDEPH 72
Query: 737 RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLV 796
R Y P ++ E++ F W + + + L + L G +
Sbjct: 73 RNILYLGHLPGLKPELSALENLHF--WAAIHGGAQRT-----IEDALAAVGLTGFEDLPA 125
Query: 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTV 856
LS Q++RL +A ++ + +DEPT+ LD A++ ++ + G V
Sbjct: 126 AQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIV 180
Query: 857 VCTIHQP 863
+ T HQ
Sbjct: 181 LLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 21/215 (9%)
Query: 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQ 732
K +++I+ T + L+G +GAGK+TL+ +++G R T G+I G+P +
Sbjct: 11 GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTR 66
Query: 733 HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIK 792
+I E ++ N+T E++ L P+ ++EVL ++L
Sbjct: 67 KDLHKIGSLIESPPLYE-NLTARENLKVHTTLLGLPD-------SRIDEVLNIVDLTNT- 117
Query: 793 YSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET 852
G S ++RL IA+ L+ +P ++ +DEPT+GLD + +++ E
Sbjct: 118 ----GKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173
Query: 853 GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
G TV+ + H S + D I + + G + Y G
Sbjct: 174 GITVILSSHILS--EVQQLADHIGIISEGVLGYQG 206
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 61/197 (30%), Positives = 100/197 (50%), Gaps = 24/197 (12%)
Query: 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGGYPKV 731
KK ++++D++ G + L+G +GAGKTT ++ G +G I+ D I P
Sbjct: 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLP-- 72
Query: 732 QHTFARIS-GYCEQNDIHSPNI----TVEESVIFSAWLRLSPEIDLKTKA--EFVNEVLQ 784
H AR+ GY Q +I TVE++++ A L + E DLK E ++ +L+
Sbjct: 73 MHKRARLGIGYLPQ----EASIFRKLTVEDNIM--AVLEIR-EKDLKKAERKEELDALLE 125
Query: 785 TIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 844
+ ++ S S LS +R+R+ IA L ANP I +DEP +G+D A + R
Sbjct: 126 EFHITHLRDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQR 180
Query: 845 AVKNVVETGRTVVCTIH 861
+K++ + G V+ T H
Sbjct: 181 IIKHLKDRGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 30/171 (17%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 737
L+D++ PG L ++G +GAGKTT+MDV++G R EG + GG +
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD----EGSVLFGGTDLTGLPEHQ 73
Query: 738 I--SGYCE--QNDIHSPNITVEE----------SVIFSAWLRLSPEIDLKTKAEFVNEVL 783
I +G Q N+TV E SV S + RLS E + + EVL
Sbjct: 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR-----IEEVL 128
Query: 784 QTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834
+TI L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 129 ETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 2e-11
Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 28/235 (11%)
Query: 670 RGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG-GIIEGDIRIGGY 728
+ FNQ Q L + G + AL+G SG+GK+TL+ LSG TG I + G
Sbjct: 12 KTFNQH--QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGR 69
Query: 729 PKVQHTFARISGYCEQNDIHSPNI----------TVEESVIFSAWLRLSPEIDLKTKAEF 778
VQ R++ ++ ++ I +V E+V+ A L +T +
Sbjct: 70 -TVQRE-GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA---LGSTPFWRTCFSW 124
Query: 779 VNEVLQTIELDGIKYSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 833
+ L + + VG+ VS LS Q++R+ IA L+ +I DEP +
Sbjct: 125 FTREQKQRALQAL--TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIAS 182
Query: 834 LDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
LD +A IVM ++++ + G TVV T+HQ +D + + I+ G + Y G
Sbjct: 183 LDPESARIVMDTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 54/239 (22%), Positives = 97/239 (40%), Gaps = 53/239 (22%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ---KTSAYISQYDL 57
+ +LG G GK+TLL ALSG+LS SGEV+ NG L+ + P+ + A + Q
Sbjct: 29 VLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNS- 84
Query: 58 HIA-EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEK 116
+A TV+E + +G + + + + A + GL
Sbjct: 85 SLAFPFTVQEVVQMGRIPHRSGREPEEDERIA--------------AQALAATDLSGLA- 129
Query: 117 NLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL------IVGPTRALFMDE 170
DY R +SGG+++R+ + V R LF+DE
Sbjct: 130 --GRDY--------------------RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDE 167
Query: 171 ISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229
++ LD + + + L + A++++L D ++L+ +G+++ G
Sbjct: 168 PTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224
|
Length = 259 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 3e-11
Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 23/217 (10%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 739
L D + T G + AL+GV+G+GK+TL L G + G I I G P Q +
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQKNLV 80
Query: 740 GYCEQN---DIHSPNITVEESVIFS-----AWLRLSPEIDLKTKAEFVNEVLQTIELDGI 791
Y Q+ D P + VE+ V+ WLR + + D + V L +++
Sbjct: 81 AYVPQSEEVDWSFP-VLVEDVVMMGRYGHMGWLRRAKKRD----RQIVTAALARVDMVEF 135
Query: 792 KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE 851
++ +G LS Q+KR+ +A + +I +DEP +G+D + A ++ ++ + +
Sbjct: 136 RHRQIG-----ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD 190
Query: 852 TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
G+T++ + H + E D +++K G ++ SGP
Sbjct: 191 EGKTMLVSTHNLG-SVTEFCDYTVMVK--GTVLASGP 224
|
Length = 272 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-11
Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 31/229 (13%)
Query: 671 GFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGY 728
G++ + L+ + + T +PG AL+G SG+GK+T+ +++G + G +I G
Sbjct: 486 GYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGI 541
Query: 729 PKVQHTFARISG---YCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQT 785
P+ + ++ +Q DI TV +++ + W P+ DL +
Sbjct: 542 PREEIPREVLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLV-------RACKD 591
Query: 786 IELDGIKYSLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 839
+ + S G G + LS QR+RL IA LV NPSI+ +DE TS LD
Sbjct: 592 AAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETE 651
Query: 840 AIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
I+ N+ G T + H+ S I + D I++ G+++ G
Sbjct: 652 KIIDD---NLRRRGCTCIIVAHRLST-IRDC--DEIIVLERGKVVQRGT 694
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 4e-11
Identities = 56/201 (27%), Positives = 106/201 (52%), Gaps = 15/201 (7%)
Query: 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGGYPKV 731
K +++ D++ T G + L+G +GAGKTT ++ G R G II D I P
Sbjct: 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLP-- 71
Query: 732 QHTFARIS-GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG 790
H AR GY Q ++V ++++ A L++ ++ + + + NE+++ ++
Sbjct: 72 LHARARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEH 129
Query: 791 IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV 850
++ S+ G S LS +R+R+ IA L ANP I +DEP +G+D + + R ++++
Sbjct: 130 LRDSM----GQS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLR 184
Query: 851 ETGRTVVCTIH--QPSIDIFE 869
++G V+ T H + ++ + E
Sbjct: 185 DSGLGVLITDHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 4e-11
Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 21/217 (9%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP----KVQH 733
+L ++ T PG AL+G SG GK+T++ +L + G+I + G ++
Sbjct: 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLL--ERFYDPTSGEILLDGVDIRDLNLRW 74
Query: 734 TFARISGYCEQNDIHSP---NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG 790
++I G Q P + T+ E++ + E++ K +++ + ++ DG
Sbjct: 75 LRSQI-GLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLP-DG 128
Query: 791 IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV 850
+LVG S LS Q++R+ IA L+ NP I+ +DE TS LDA + +V A+ +
Sbjct: 129 Y-DTLVG-ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM 186
Query: 851 ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ GRT + H+ S I A DLI + G+++ G
Sbjct: 187 K-GRTTIVIAHRLST-IRNA--DLIAVLQNGQVVEQG 219
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 4e-11
Identities = 61/222 (27%), Positives = 106/222 (47%), Gaps = 31/222 (13%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR----KTGGIIEGDIRIGGYPKVQHT 734
+L+D++ + G +TAL+G +G GK+TL+ + R ++G + GD I Q
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPISMLSSRQ-- 73
Query: 735 FARISGYCEQNDIHSPNITVEESVIF------SAWLRLSPEIDLKTKAEFVNEVLQTIEL 788
AR Q+ + ITV E V + S W RLS E VN+ ++ +
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE-----DNARVNQAMEQTRI 128
Query: 789 DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKN 848
+ L ++ LS QR+R +A+ L + ++ +DEPT+ LD +MR ++
Sbjct: 129 N----HLADRR-LTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE 183
Query: 849 VVETGRTVVCTIHQPSIDIFEA---FDDLILMKNGGRIIYSG 887
+ G+TVV +H D+ +A D L+++ G ++ G
Sbjct: 184 LNTQGKTVVTVLH----DLNQASRYCDHLVVLA-NGHVMAQG 220
|
Length = 255 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 5e-11
Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 33/182 (18%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARI 738
LL +++ T PG L+G +GAGK+TL+ +L+G G++ +V
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKGLRV------- 68
Query: 739 SGYCEQNDIHSPNITVEESVI--FSAWLRLSPEID--LKTKAEFVNEVLQTI-----ELD 789
GY Q P TV + VI F L E++ A+ +E+L + ELD
Sbjct: 69 -GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELD 127
Query: 790 G------IKYSLVGLPGVSGLSTE-------QRKRLTIAVELVANPSIIFMDEPTSGLDA 836
G + +L+GL G R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 128 GWTLEARAEEALLGL-GFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 837 RA 838
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 5e-11
Identities = 67/228 (29%), Positives = 101/228 (44%), Gaps = 30/228 (13%)
Query: 649 PLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLM- 707
L L+ +DV Y A+K + + G + AL+G SG GKTT +
Sbjct: 2 TLLLSAQDVNIYYGDKQAVKNVNLD-------------VQRGTVNALIGPSGCGKTTFLR 48
Query: 708 ------DVLSG-RKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEESVI 759
D+ G R TG I+ I G P+V R G Q P ++V ++V+
Sbjct: 49 AINRMHDLTPGARVTGRILLDGQDIYG-PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVV 107
Query: 760 FSAWLRLSPEIDLKTKAEFVNEVLQTIEL-DGIKYSLVGLPGVSGLSTEQRKRLTIAVEL 818
A L+L+ D E L+ L D +K L P +GLS Q++RL IA L
Sbjct: 108 --AGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRL-KTPA-TGLSGGQQQRLCIARAL 163
Query: 819 VANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCT--IHQPS 864
P I+ MDEPTS LD + A + + ++ + ++ T +HQ +
Sbjct: 164 AVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 6e-11
Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 21/226 (9%)
Query: 671 GFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGII--EG---DI 723
F + +L + F +T L+G +G GK+TL LSG R G + +G D
Sbjct: 8 WFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDY 67
Query: 724 RIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVL 783
G ++ A + EQ ++ ++ + FS PE ++ V+E L
Sbjct: 68 SKRGLLALRQQVATVFQDPEQQIFYT---DIDSDIAFSLRNLGVPEAEI---TRRVDEAL 121
Query: 784 QTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 843
++ ++ + LS Q+KR+ IA LV + +DEPT+GLD ++
Sbjct: 122 TLVDAQHFRHQ-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176
Query: 844 RAVKNVVETGRTVVCTIHQPSID-IFEAFDDLILMKNGGRIIYSGP 888
++ +V G V+ + H ID I+E D + +++ G + + P
Sbjct: 177 AIIRRIVAQGNHVIISSH--DIDLIYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 6e-11
Identities = 64/220 (29%), Positives = 96/220 (43%), Gaps = 32/220 (14%)
Query: 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHT 734
+ L + T PG + AL+G +GAGK+TLM VLSG T G I I Y K+ H
Sbjct: 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI--TINNINYNKLDHK 75
Query: 735 FARISG----YCEQNDIHSPNITVEESVIFSAWLRLS-------PEIDLKTKAEFVNEVL 783
A G Y E + I +TV E++ R ID + +L
Sbjct: 76 LAAQLGIGIIYQELSVIDE--LTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMML 130
Query: 784 QTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA--- 840
+ G+K L V+ LS ++ L IA L+ + +I MDEPTS L +
Sbjct: 131 LRV---GLKVDLDEK--VANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF 185
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880
++M ++ G +V H+ + +I D +MK+G
Sbjct: 186 LIMNQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 7e-11
Identities = 65/241 (26%), Positives = 106/241 (43%), Gaps = 39/241 (16%)
Query: 668 KKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRI 725
K G K+ L D++ + G + ++G SGAGK+TL+ ++G R T G + +
Sbjct: 9 KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT----SGSVLV 64
Query: 726 GGY------PKVQHTFARISGYCEQ--NDIHSPNITVEESVIFSAWLRLSP-EIDLKTKA 776
G K R G Q N + S TV E+V P EI KA
Sbjct: 65 DGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR--TVFENVAL-------PLEIAGVPKA 115
Query: 777 EFVNEVLQTIELDGIKYSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPT 831
E VL+ +EL VGL + LS Q++R+ IA L NP ++ DE T
Sbjct: 116 EIEERVLELLEL-------VGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEAT 168
Query: 832 SGLDARAAAIVMRAVKNV-VETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890
S LD ++ ++++ E G T+V H+ +++ + D + + G ++ G +
Sbjct: 169 SALDPETTQSILALLRDINRELGLTIVLITHE--MEVVKRICDRVAVMEKGEVVEEGTVE 226
Query: 891 Q 891
+
Sbjct: 227 E 227
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 20/217 (9%)
Query: 673 NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732
+ ++L ++ + G + A++G SG+GK+TL+ +L G G++ G +
Sbjct: 14 GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSK 71
Query: 733 HTFARIS-------GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQT 785
+ + G+ Q P+ T E+V I K+ E +
Sbjct: 72 LSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLL------IGKKSVKEAKERAYEM 125
Query: 786 IELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 845
+E G+++ + P S LS +R+R+ IA LV PS++ DEPT LD A I+
Sbjct: 126 LEKVGLEHRINHRP--SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183
Query: 846 VKNV-VETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881
+ + E + + H ++ + D ++ MK+G
Sbjct: 184 MLELNRELNTSFLVVTHDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 69/281 (24%), Positives = 114/281 (40%), Gaps = 53/281 (18%)
Query: 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDV 709
+ + ++V Y + + R L D+ T G TA +G +G+GK+T+M +
Sbjct: 1 MGINLQNVSYTYQAGTPFEGRA--------LFDVNLTIEDGSYTAFIGHTGSGKSTIMQL 52
Query: 710 LSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV------EESVIFSAW 763
L+G +G +R+ I+ + DI V ES +F
Sbjct: 53 LNGLHVP--TQGSVRVDD--------TLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-- 100
Query: 764 LRLSPEIDLK-----------TKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRL 812
E LK ++ E + + L GI SL LS Q +R+
Sbjct: 101 -----ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFE-LSGGQMRRV 154
Query: 813 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFD 872
IA L P I+ +DEPT+GLD + +M K + ++G T+V H +D +
Sbjct: 155 AIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHL--MDDVANYA 212
Query: 873 DLILMKNGGRIIYSG---PLGQHSCKVIDYFESIP-GVLKI 909
D + + G+++ SG + Q +D+ E GV KI
Sbjct: 213 DFVYVLEKGKLVLSGKPKDIFQD----VDFLEEKQLGVPKI 249
|
Length = 280 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 2e-10
Identities = 65/258 (25%), Positives = 101/258 (39%), Gaps = 64/258 (24%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS-AYISQ-YDL--HI 59
LLG GCGK+TLL ++G + SGE+ +G + + P+K A + Q Y L H
Sbjct: 34 LLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPH- 89
Query: 60 AEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQ 119
MTV E I F + +G K I V+ + K L
Sbjct: 90 --MTVYENIAFGLKLRGVP------KAEIDKR-------------------VKEVAKLLG 122
Query: 120 TDYIL--KILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDE-ISNGLD 176
+++L K L L SGGQ++R+ +V + +DE +SN LD
Sbjct: 123 LEHLLNRKPLQL----------------SGGQRQRVALARALVRKPKVFLLDEPLSN-LD 165
Query: 177 SSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKF 236
+ + S +K L T + E L D +++M +G+I G +
Sbjct: 166 AKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLEL--- 221
Query: 237 FEDCGFRCPERKGVADFL 254
+ P VA F+
Sbjct: 222 -----YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 22/189 (11%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYP--KVQHT 734
L S ++ T G + G +G+GKTTL+ +L+G G + + G P + +
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGRVLLNGGPLDFQRDS 70
Query: 735 FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYS 794
AR Y ++V E++ F W + E V E L + L+G +
Sbjct: 71 IARGLLYLGHAPGIKTTLSVLENLRF--WHADHSD-------EQVEEALARVGLNGFEDR 121
Query: 795 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGR 854
V LS Q++R+ +A L++ + +DEPT+ LD A A+ G
Sbjct: 122 PVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGG 176
Query: 855 TVVCTIHQP 863
VV T HQ
Sbjct: 177 MVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 35/227 (15%)
Query: 681 SDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--GGIIEGDIRIGGYPKV------- 731
D++ PG + ++G SG+GK+TL+ L+GR G +R G ++
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 732 QHTFARIS-GYCEQNDIHSPNITVEESVIFSAWLRLSPEI---------DLKTKAEFVNE 781
+ R G+ QN + V SA + + +++ A+ +
Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRMRV------SAGANIGERLMAIGARHYGNIRATAQ---D 130
Query: 782 VLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 841
L+ +E+D + + LP S ++RL IA LV P ++FMDEPT GLD A
Sbjct: 131 WLEEVEIDPTR--IDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQAR 186
Query: 842 VMRAVKN-VVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
++ ++ V + G V+ H + A L++M+ GR++ SG
Sbjct: 187 LLDLLRGLVRDLGLAVIIVTHDLGVARLLA-QRLLVMQQ-GRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-10
Identities = 65/255 (25%), Positives = 112/255 (43%), Gaps = 49/255 (19%)
Query: 648 EPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLM 707
+ ++LT +V + + + +L ++ + G AL+G +G GK+TL+
Sbjct: 335 DQVSLTLNNVSF-----------TYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLL 383
Query: 708 DVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESV-IFSAWLR- 765
+L+ + +G+I + G P I+ Y E + V + V +FSA LR
Sbjct: 384 QLLT--RAWDPQQGEILLNGQP--------IADYSEA-ALRQAISVVSQRVHLFSATLRD 432
Query: 766 -LSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST------------EQRKRL 812
L + + EVLQ + L+ + L GL+ EQR RL
Sbjct: 433 NLLLAAPNASDEALI-EVLQQVGLEKL------LEDDKGLNAWLGEGGRQLSGGEQR-RL 484
Query: 813 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFD 872
IA L+ + ++ +DEPT GLDA ++ + + +TV+ H+ + E FD
Sbjct: 485 GIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMITHR--LTGLEQFD 541
Query: 873 DLILMKNGGRIIYSG 887
+ +M N G+II G
Sbjct: 542 RICVMDN-GQIIEQG 555
|
Length = 574 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 33/211 (15%)
Query: 689 PGILTALMGVSGAGKTTLMDVLSGRKTGGII---EGDIRIGGYPKVQHTFARISGYCEQN 745
G L L+G +GAGKTTL+ R G+I +G +++ G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 746 DIHSPN--ITVEESVI-----FSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
+ + I+V +V+ WLR D V + L+ + L + VG
Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRPVG- 112
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVC 858
LS QR+R+ +A L PS++ +DEP +GLD ++ + G ++
Sbjct: 113 ----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILM 168
Query: 859 TIHQPSIDIFEAFD--DLILMKNGGRIIYSG 887
T H D+ +A D +++ N GR+I G
Sbjct: 169 TTH----DLAQAMATCDRVVLLN-GRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 17/195 (8%)
Query: 690 GILTALMGVSGAGKTTLMDVLSGRKT---GGIIEGDIRIGGYPKVQHTFARISGYCEQND 746
G + A+MG SGAGK+TL+++++G G I D G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 747 IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806
++TV +++ L L P LK AE +V+ + GI L LP LS
Sbjct: 82 F--AHLTVRQNI----GLGLHP--GLKLNAEQQEKVVDAAQQVGIADYLDRLPE--QLSG 131
Query: 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV-ETGRTVVCTIHQPSI 865
QR+R+ +A LV I+ +DEP S LD ++ VK + E RT++ H S
Sbjct: 132 GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS- 190
Query: 866 DIFEAFDDLILMKNG 880
D + ++ G
Sbjct: 191 DARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 2e-10
Identities = 54/229 (23%), Positives = 96/229 (41%), Gaps = 46/229 (20%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYPKV----- 731
++D + G + +MG+SG+GK+TL+ R +IE G+I + G
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLV-----RLLNRLIEPTRGEILVDGKDIAKLSAA 98
Query: 732 ------QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQT 785
+ + + Q+ P+ TV E+V F ++ P+ + + +A E L+
Sbjct: 99 ELRELRRKKISMVF----QSFALLPHRTVLENVAFGLEVQGVPKAEREERAL---EALEL 151
Query: 786 IELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAI 841
+ L+G LS ++R+ +A L +P I+ MDE S LD
Sbjct: 152 VGLEGYADKYPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDE 206
Query: 842 VMRAVKNVVETGRTVVCTIHQPSIDIFEAF---DDLILMKNGGRIIYSG 887
++ + +T+V H D+ EA D + +MK G I+ G
Sbjct: 207 LLELQAKL---KKTIVFITH----DLDEALRIGDRIAIMK-DGEIVQVG 247
|
Length = 386 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 53/217 (24%), Positives = 106/217 (48%), Gaps = 25/217 (11%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFA- 736
L +++ + G + +G +GAGK+T M +++G G ++ + G +Q+
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQ----VCGEDVLQNPKEV 73
Query: 737 -RISGYCEQNDIHSP---NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIK 792
R GY + H+P ++ V E + F A + LK + V E+++ + L +
Sbjct: 74 QRNIGYLPE---HNPLYLDMYVREYLQFIAGIYGMKGQLLKQR---VEEMIELVGLRPEQ 127
Query: 793 YSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET 852
+ +G LS R+R+ +A L+ +P ++ +DEPT+GLD + +KN+ +
Sbjct: 128 HKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD 182
Query: 853 GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889
+T++ + H + EA D +++ N G+I+ L
Sbjct: 183 -KTIILSTH--IMQEVEAICDRVIIINKGKIVADKKL 216
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 3e-10
Identities = 64/218 (29%), Positives = 98/218 (44%), Gaps = 26/218 (11%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII---EGDIRIGGYPKVQHTFA 736
L D++ + G A++G +G+GK+TL +L+G ++ G I +GG + T
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNG-----LLLPEAGTITVGGMVLSEETVW 77
Query: 737 RIS---GYCEQN-DIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIK 792
+ G QN D TV++ V F P + E V V Q + G++
Sbjct: 78 DVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVP------REEMVERVDQALRQVGME 131
Query: 793 YSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET 852
L P LS Q++R+ IA L P II +DE TS LD R V+ V+ + E
Sbjct: 132 DFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ 189
Query: 853 GR-TVVCTIHQPSIDIFE-AFDDLILMKNGGRIIYSGP 888
TV+ H D+ E A D +++ N G I+ G
Sbjct: 190 KGITVLSITH----DLDEAAQADRVIVMNKGEILEEGT 223
|
Length = 279 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 3e-10
Identities = 61/226 (26%), Positives = 105/226 (46%), Gaps = 43/226 (19%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVL-------SGRKTGGIIEGDIRIGGYPKVQ 732
L + T RPG AL+G SGAGK+TL +L SGR I + G Q
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGR---------ILLDGVDLRQ 406
Query: 733 HTFARISGYCEQNDIHSPNITV-EESVIFSAWLR----------LSPEIDLKTKAEFVNE 781
+ ++ + V ++ V+F+A + E++ +A +E
Sbjct: 407 ---------LDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHE 457
Query: 782 VLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 841
+ L + +G GV+ LS QR+R+ IA ++ + I+ +DE TS LDA + +
Sbjct: 458 FIS--ALPEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQL 514
Query: 842 VMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
V +A++ + GRT + H+ + + +A D I++ + GRI+ G
Sbjct: 515 VQQALE-TLMKGRTTLIIAHRLAT-VLKA--DRIVVMDQGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 62/218 (28%), Positives = 102/218 (46%), Gaps = 25/218 (11%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYP-----KV 731
L I + G +TA++G +GAGK+TL L+G I++ G I G P K
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNG-----ILKPSSGRILFDGKPIDYSRKG 76
Query: 732 QHTFARISGYCEQNDIHSP-NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG 790
G Q+ + + +V + V F A PE +++ + + ++ G
Sbjct: 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD------NALKRTG 130
Query: 791 IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV 850
I++ L P LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + +
Sbjct: 131 IEH-LKDKP-THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQ 188
Query: 851 -ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
E G T++ H IDI + D + + GR+I G
Sbjct: 189 KELGLTIIIATH--DIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (150), Expect = 4e-10
Identities = 64/245 (26%), Positives = 106/245 (43%), Gaps = 29/245 (11%)
Query: 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS 711
+ FE V Y S R L DI + G TAL+G +G+GK+TL+ L+
Sbjct: 2 IKFEKVNYTYQPNSPFASRA--------LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLN 53
Query: 712 G--RKTGGIIE-GDIRIGGYPK------VQHTFARISGYCEQNDIHSPNITVEESVIFSA 762
G + T G + GDI + K V+ + + E EE+V+
Sbjct: 54 GLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ-------LFEETVLKD- 105
Query: 763 WLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANP 822
+ P+ K + + +E+ G+ LS Q +R+ IA L P
Sbjct: 106 -VAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFE-LSGGQMRRVAIAGILAMEP 163
Query: 823 SIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882
++ +DEPT+GLD +A +M+ +++ ++G+TVV H +D + D + + G
Sbjct: 164 EVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHL--MDDVADYADYVYLLEKGH 221
Query: 883 IIYSG 887
II G
Sbjct: 222 IISCG 226
|
Length = 288 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 4e-10
Identities = 65/265 (24%), Positives = 111/265 (41%), Gaps = 62/265 (23%)
Query: 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDV 709
+++ FE+V Y + M+K+G L +I+ G AL+G +G+GK+TLM
Sbjct: 1 MSIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQH 52
Query: 710 LSG--RKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPN---ITVEESVIFSAWL 764
+ + + G I I+GY + + N + + S++F
Sbjct: 53 FNALLKPSSGTIT-----------------IAGYHITPETGNKNLKKLRKKVSLVFQF-- 93
Query: 765 RLSPEIDLKTKAEFVNEVLQTIELDGIKYSL---------------VGLP------GVSG 803
PE L F N VL+ +E + VGL
Sbjct: 94 ---PEAQL-----FENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFE 145
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQP 863
LS Q +R+ IA + P I+ +DEP +GLD +M+ K+ + G TV+ H
Sbjct: 146 LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM 205
Query: 864 SIDIFEAFDDLILMKNGGRIIYSGP 888
D+ E DD++++++G I ++ P
Sbjct: 206 D-DVAEYADDVLVLEHGKLIKHASP 229
|
Length = 287 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 5e-10
Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 28/220 (12%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 739
L I+ PG AL+G SG+GK+TL++++ + G I + G+ +T A +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 740 GYCEQ--NDIHSPNITVEESVIFSAWLRLSPEIDLKTKA------EFVNEV---LQTIEL 788
D+ N T+ ++ + + +++ +FV+++ L T
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYGR-TEQADRAEIERALAAAYAQDFVDKLPLGLDTP-- 462
Query: 789 DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKN 848
+G GV LS QR+RL IA L+ + I+ +DE TS LD + +V A++
Sbjct: 463 -------IGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALER 514
Query: 849 VVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
+++ GRT + H+ S E D +++M + GRI+ G
Sbjct: 515 LMQ-GRTTLVIAHRLS--TIEKADRIVVMDD-GRIVERGT 550
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 6e-10
Identities = 58/233 (24%), Positives = 89/233 (38%), Gaps = 48/233 (20%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGY---RLDEFVPQKTSAYISQYDLHIA 60
LLG G GKTTLL ++ L SG+V+ +G R FV +K + L+ A
Sbjct: 33 LLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLY-A 88
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
+T RE + + AR G +KA +
Sbjct: 89 RLTARENLKYFARLNGLS------------------------RKEIKA----------RI 114
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
+ K L L D VG S G K+++ +V L +DE ++GLD T
Sbjct: 115 AELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTR 169
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233
+ F+K L + A S E L D V+++ +G++V G +
Sbjct: 170 RKFHDFIKQLKNEGRAVIFSS--HIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220
|
Length = 245 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 6e-10
Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 28/226 (12%)
Query: 672 FNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII---EGDIRIGGY 728
+ + L +++ G A++G +G+GK+T+ +L+G ++ G+I+I G
Sbjct: 17 YPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTG-----LLKPQSGEIKIDGI 71
Query: 729 PKVQHTFARIS---GYCEQN-DIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQ 784
+ I G QN D TVE+ + F + P +K + + + +
Sbjct: 72 TISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVG 131
Query: 785 TIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 844
+ L P LS Q++R+ IA L NP II DE TS LD + + +
Sbjct: 132 MEDY------LDKEP--QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKK 183
Query: 845 AVKNVVETG-RTVVCTIHQPSIDIFEAF--DDLILMKNGGRIIYSG 887
+ ++ +T +T++ H D+ EA D +I+ + G++I G
Sbjct: 184 IMVDLRKTRKKTLISITH----DMDEAILADKVIVF-SEGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 8e-10
Identities = 54/233 (23%), Positives = 91/233 (39%), Gaps = 47/233 (20%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS---AYISQYDL 57
++G G GK+TLL L G G + +G L++ Y+ Q D
Sbjct: 501 KVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQ-DP 556
Query: 58 HIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKN 117
+ ++RE I G+ + +E+I+ +LAG
Sbjct: 557 FLFSGSIRENIAL-------GNPEATDEEIIEAAQLAGAHEF------------------ 591
Query: 118 LQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDS 177
I L + DT VG+ +SGGQ++RL ++ + L +DE ++ LD
Sbjct: 592 --------IENLPMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDP 642
Query: 178 STTFQIVSFL-KHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229
T I+ L + L T +I+ T D ++++ +GKIV G
Sbjct: 643 ETEAIILQNLLQILQGRT--VIIIA---HRLSTIRSADRIIVLDQGKIVEQGS 690
|
Length = 709 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 8e-10
Identities = 58/223 (26%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--- 732
K+Q L ++ G + AL+G +GAGKTTL+ + G G I G
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPP 72
Query: 733 HTFARIS-GYCEQNDIHSPNITVEESVIFSAWLRLSPEI--DLKTKAEFVNEVLQTI-EL 788
H AR+ Y + P +TVEE+ L L D + + + EV + L
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEEN------LLLGAYARRDKEAQERDLEEVYELFPRL 126
Query: 789 DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKN 848
+ G LS +++ L IA L++ P ++ +DEP+ GL + + A+K
Sbjct: 127 KERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE 181
Query: 849 VVETGRTVVCTIHQPSIDIFEAF---DDLILMKNGGRIIYSGP 888
+ + G + + Q + A D +++N GRI+ SG
Sbjct: 182 LRKEGGMTILLVEQ---NARFALEIADRGYVLEN-GRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 9e-10
Identities = 67/237 (28%), Positives = 103/237 (43%), Gaps = 24/237 (10%)
Query: 662 DTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEG 721
DT A++ F LL ++ TF G +T L+G +G+GK+TL+ +L GR EG
Sbjct: 9 DTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPP-SEG 66
Query: 722 DIRIGGYPKVQ---HTFARISGYCEQNDIHSPNITVEESVIF------SAWLRLSPEIDL 772
+I + P FAR Y Q + +TV E V A R
Sbjct: 67 EILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAA--- 123
Query: 773 KTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 832
E V E + + L + + L V LS +R+R IA+ + + + +DEPTS
Sbjct: 124 --DREKVEEAISLVGLKPLAHRL-----VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTS 176
Query: 833 GLDARAAAIVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
LD V+ V + E G TV+ +H I++ + D ++ GG +I G
Sbjct: 177 ALDIAHQVDVLALVHRLSQERGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 65/239 (27%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGY----RLDEFVPQKTSAYISQYD 56
M LLG G GKTTL+ L+ S SG + +G + + ++ Y+ Q
Sbjct: 27 MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKL--RRRIGYLPQEF 81
Query: 57 LHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEK 116
TVRE +D+ A L GI P +V A
Sbjct: 82 GVYPNFTVREFLDYIAW-------------------LKGI-PSKEVKA------------ 109
Query: 117 NLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLD 176
+ D +L+++ L A +G +SGG ++R+ + +VG L +DE + GLD
Sbjct: 110 --RVDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD 162
Query: 177 SSTTFQIVSFLKHLVHI-TDATALISLLQPAPETFDLFD------DVMLMAEGKIVYHG 228
+ + F L + D ++S T + D V ++ +GK+V+ G
Sbjct: 163 PE---ERIRFRNLLSELGEDRIVILS-------THIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 59/236 (25%), Positives = 91/236 (38%), Gaps = 58/236 (24%)
Query: 1 MTLLLGHPGCGKTTLLSALSG--KLSHSLKVSGEVSYNGYRLDEFVPQKTS-AYISQ-YD 56
LLG GCGKTTLL ++G + SGE+ +G + P++ + + Q Y
Sbjct: 28 FLALLGPSGCGKTTLLRLIAGLERPD-----SGEILIDGRDVTGVPPERRNIGMVFQDYA 82
Query: 57 L--HIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGL 114
L H +TV E I F + +G +A+ V +L +L G+ + + L
Sbjct: 83 LFPH---LTVAENIAFGLKLRGVP-KAEIRARVRELLELVGL------EGLLNR-YPHEL 131
Query: 115 EKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE-LIVGPTRALFMDE-IS 172
SGGQ++R+ L P L +DE +S
Sbjct: 132 -------------------------------SGGQQQRVALARALAREP-SLLLLDEPLS 159
Query: 173 NGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
LD+ ++ LK L T + E L D + +M EG+IV G
Sbjct: 160 A-LDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 40/211 (18%)
Query: 695 LMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYPKVQHTFARIS-------GYCEQ 744
+MG+SG+GK+TL+ R +IE G + I G + + Q
Sbjct: 55 IMGLSGSGKSTLL-----RCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQ 109
Query: 745 NDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGL 804
+ P+ TV E+V F ++ P + + +A E L+ + L+G ++ L
Sbjct: 110 SFALLPHRTVLENVAFGLEVQGVPRAEREERAA---EALELVGLEGWEHKYPD-----EL 161
Query: 805 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV-----ETGRTVVCT 859
S ++R+ +A L +P I+ MDE S LD ++ R +++ + E +T+V
Sbjct: 162 SGGMQQRVGLARALAVDPDILLMDEAFSALD----PLIRREMQDELLRLQAELQKTIVFI 217
Query: 860 IHQPSIDIFEAF---DDLILMKNGGRIIYSG 887
H D+ EA D + +MK+ GR++ G
Sbjct: 218 TH----DLDEALRLGDRIAIMKD-GRLVQVG 243
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 65/281 (23%), Positives = 129/281 (45%), Gaps = 35/281 (12%)
Query: 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDV 709
+T+ F++V Y + + Q + D+ F G A++G +G+GK+TL+
Sbjct: 1 MTIRFDNVSYTYQKGTPYEH--------QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQN 52
Query: 710 LSG--RKTGGIIE-GDIRIGGYPK---VQHTFARISGYCEQNDIHSPNITVEESVIFSAW 763
++ + T G + DI I K ++ RI + + TVE +IF
Sbjct: 53 INALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFG-- 110
Query: 764 LRLSPE---IDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVA 820
P+ ++L + + +L ++L G ++ +S Q +++ I L
Sbjct: 111 ----PKNFKMNLDEVKNYAHRLL--MDL-GFSRDVMSQSPFQ-MSGGQMRKIAIVSILAM 162
Query: 821 NPSIIFMDEPTSGLDARAAAIVMRAVKNV-VETGRTVVCTIHQPSIDIFEAFDDLILMKN 879
NP II +DEPT+GLD ++ VMR +K++ + +T++ H + ++ D++I+MK
Sbjct: 163 NPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE 221
Query: 880 GGRIIYSGP--LGQHSCKVIDYFESIPGVLK----IKDNYN 914
G + + P L + K+ D+ +P +++ + Y
Sbjct: 222 GSIVSQTSPKELFKDKKKLADWHIGLPEIVQLQYDFEQKYQ 262
|
Length = 286 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 13/169 (7%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIEGDIRIGG---Y- 728
+ D+ P +TA +G SG GK+T++ L+ G +EG++ + G Y
Sbjct: 16 SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYG 75
Query: 729 PKVQH-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE 787
P V R G Q P +++ ++V+ A L+L+ + K E V + L+
Sbjct: 76 PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLRGAN 133
Query: 788 L-DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
L + +K L PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 134 LWNEVKDRL-DKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-09
Identities = 65/247 (26%), Positives = 103/247 (41%), Gaps = 60/247 (24%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGY---RLDEFVPQKTSAYISQYDL 57
+ LG G GK+T L L+G L L SG+V NG R E + + Q
Sbjct: 52 IVGFLGANGAGKSTTLKMLTGLL---LPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQ 108
Query: 58 HIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKN 117
++ +++ EV+KL I+ PD D + +
Sbjct: 109 LWWDLPALDSL-----------------EVLKL-----IYEIPD-DEF---------AER 136
Query: 118 LQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVG---PTRALFMDEISNG 174
L D++ +IL L+ + P+R+ +S GQ+ R EL P + LF+DE + G
Sbjct: 137 L--DFLTEILDLE----GFLKWPVRK-LSLGQRMRA---ELAAALLHPPKVLFLDEPTVG 186
Query: 175 LDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFD----LFDDVMLMAEGKIVYHGPR 230
LD + I FLK AT L+ FD L D V+L+ +G++V+ G
Sbjct: 187 LDVNAQANIREFLKEYNEERQATVLL-----TTHIFDDIATLCDRVLLIDQGQLVFDGTL 241
Query: 231 SYICKFF 237
+ + + F
Sbjct: 242 AQLQEQF 248
|
Length = 325 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 2e-09
Identities = 57/216 (26%), Positives = 108/216 (50%), Gaps = 24/216 (11%)
Query: 686 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS---GYC 742
TF +TA +G +GAGKTT + +L+G G + +GG ++ + G C
Sbjct: 952 TFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGG-KDIETNLDAVRQSLGMC 1008
Query: 743 EQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802
Q++I ++TV E ++F A L+ ++ E E+ +E G+ +
Sbjct: 1009 PQHNILFHHLTVAEHILFYAQLKG------RSWEEAQLEMEAMLEDTGLHHKRN--EEAQ 1060
Query: 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV---ETGRTVVCT 859
LS +++L++A+ V + ++ +DEPTSG+D + R++ +++ +GRT++ +
Sbjct: 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYS----RRSIWDLLLKYRSGRTIIMS 1116
Query: 860 IHQPSIDIFEAFDDLILMKNGGRIIYSG-PLGQHSC 894
H +D + D I + + GR+ SG PL +C
Sbjct: 1117 THH--MDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 58/239 (24%), Positives = 101/239 (42%), Gaps = 49/239 (20%)
Query: 598 KSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDV 657
KSR I EK ++ + P G + GK+VL FE ++ ++
Sbjct: 281 KSR-IKRLEKLEARLAEERPVE--EGKPLAFRFP---PPGKRLGKLVLEFENVSKGYDGG 334
Query: 658 QYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG 717
+ LL D++ G A++G +GAGK+TL+ +L+G + G
Sbjct: 335 RL-------------------LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG-ELGP 374
Query: 718 IIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLR-LSPEIDLKTKA 776
+ G +++G V+ GY +Q H + +++V+ L P+ D +
Sbjct: 375 -LSGTVKVG--ETVK------IGYFDQ---HRDELDPDKTVL--EELSEGFPDGDEQ--- 417
Query: 777 EFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
EV + G P V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 418 ----EVRAYLGRFGFTGEDQEKP-VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 71/255 (27%), Positives = 114/255 (44%), Gaps = 59/255 (23%)
Query: 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVL-- 710
F+DV + ++ + Q + D++ +PG A++G +GAGK+TL+++L
Sbjct: 336 EFDDVSF-----------SYDNSR-QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQR 383
Query: 711 -----SGRKTGGIIEG-DIRIGGYPKVQHT----------FAR-ISGYCEQNDIHSPNIT 753
SGR I+G DIR ++ F R I + + P+ T
Sbjct: 384 VFDPQSGRIL---IDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIE---DNIRVGRPDAT 437
Query: 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY-SLVGLPGVSGLSTEQRKRL 812
EE +R + E + IE Y ++VG G LS +R+RL
Sbjct: 438 DEE-------MRAAAER---------AQAHDFIERKPDGYDTVVGERG-RQLSGGERQRL 480
Query: 813 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFD 872
IA L+ +P I+ +DE TS LD A V A+ +++ GRT H+ S + A
Sbjct: 481 AIARALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIAHRLST-VRNA-- 536
Query: 873 DLILMKNGGRIIYSG 887
D IL+ + GR++ SG
Sbjct: 537 DRILVFDNGRVVESG 551
|
Length = 588 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-09
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 16/132 (12%)
Query: 704 TTLMDVLSG--RKTGGIIEGD-IRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIF 760
+TL+ +++G + T G I D G + RI G Q+ P +TV E++ F
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRI-GVVFQDPQLFPELTVRENLFF 59
Query: 761 SAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVA 820
E + +E G+ L P V LS Q++R+ IA L+
Sbjct: 60 GL-----------RDKEADARAEEALERVGLPDFLDREP-VGTLSGGQKQRVAIARALLK 107
Query: 821 NPSIIFMDEPTS 832
P ++ +DEPT+
Sbjct: 108 KPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 52/221 (23%), Positives = 88/221 (39%), Gaps = 22/221 (9%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTF---- 735
L + T + G + A+MG +G+GK+TL ++G + + G I G Q
Sbjct: 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG----QDLLELEP 71
Query: 736 ---ARISGYCE-QNDIHSPNITVEESVIFSAWLRLS----PEIDLKTKAEFVNEVLQTIE 787
AR + Q P ++ E + + R S +DL +F+ + +
Sbjct: 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDL---LDFLKLLKAKLA 128
Query: 788 LDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVK 847
L G+ + G S ++KR I + P + +DE SGLD A IV +
Sbjct: 129 LLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGIN 188
Query: 848 NVVETGRTVVCTIHQPSIDIFEAFD-DLILMKNGGRIIYSG 887
+ E R+ + H + D + + GRI+ SG
Sbjct: 189 RLREPDRSFLIITHYQR--LLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-09
Identities = 59/231 (25%), Positives = 104/231 (45%), Gaps = 27/231 (11%)
Query: 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS--GRKTGGIIEGDIRIGGYPKVQ-- 732
+++L I+ G + A++G SG+GK+TLM++L + T G R+ G
Sbjct: 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTY----RVAGQDVATLD 76
Query: 733 -HTFARIS----GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE 787
A++ G+ Q ++T ++V A + ++ K + E+LQ +
Sbjct: 77 ADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPA---VYAGLERKQRLLRAQELLQRLG 133
Query: 788 L-DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 846
L D ++Y P S LS Q++R++IA L+ +I DEPT LD+ + VM +
Sbjct: 134 LEDRVEYQ----P--SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAIL 187
Query: 847 KNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVI 897
+ + G TV+ H P + A + ++ G I+ P Q V
Sbjct: 188 HQLRDRGHTVIIVTHDPQV---AAQAERVIEIRDGEIV-RNPPAQEKVNVA 234
|
Length = 648 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 3e-09
Identities = 67/244 (27%), Positives = 103/244 (42%), Gaps = 65/244 (26%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 737
++L + +TALMG SG+GK+TL+ V + +IE YP+ AR
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNR-----LIEL------YPE-----AR 60
Query: 738 ISG--YCEQNDIHS--------------------PNITVEESVIFSAWL-RLSPEIDLKT 774
+SG Y + DI PN+++ E+V L RL +K+
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-----VKS 115
Query: 775 KAEFVNEVLQTIE----LDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 830
K E V +E D +K L P LS Q++RL IA L P ++ DEP
Sbjct: 116 KKELQERVRWALEKAQLWDEVKDRL-DAPAGK-LSGGQQQRLCIARALAFQPEVLLADEP 173
Query: 831 TSGLD----ARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEA--FDDLILMKNGGRII 884
T+ LD A+ ++ + K++ T+V H P +A D + G+I+
Sbjct: 174 TANLDPENTAKIESLFLELKKDM-----TIVLVTHFPQ----QAARISDYVAFLYKGQIV 224
Query: 885 YSGP 888
GP
Sbjct: 225 EWGP 228
|
Length = 250 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 20/201 (9%)
Query: 693 TALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG---YPKVQHTFARISGYCEQN-DIH 748
TAL+G +GAGK+TL+ L+G G +++ G + + G Q+ D
Sbjct: 34 TALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQ 91
Query: 749 SPNITVEESVIFSAW-LRLSP-EIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806
+ TV + V F + L E++ V E L+ + + + LS
Sbjct: 92 VFSSTVWDDVAFGPVNMGLDKDEVE-----RRVEEALKAVRMWDFRDK-----PPYHLSY 141
Query: 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSID 866
Q+KR+ IA L +P +I +DEP + LD R +M + + G+TV+ H +D
Sbjct: 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATH--DVD 199
Query: 867 IFEAFDDLILMKNGGRIIYSG 887
+ + D +++ GR++ G
Sbjct: 200 LAAEWADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 3e-09
Identities = 55/194 (28%), Positives = 80/194 (41%), Gaps = 69/194 (35%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGYPK 730
L DI +TAL+G SG GK+TL+ D++ G + +EG++ + G
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDG--- 73
Query: 731 VQHTFARISGYCEQNDIHSPNITVEE-----SVIF--------------SAWLRL----S 767
+I+ P + V E ++F + LRL
Sbjct: 74 --------------KNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKD 119
Query: 768 PEID------LKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVAN 821
E+D LK KA +EV D + S +GL G G Q++RL IA L
Sbjct: 120 KELDEIVESSLK-KAALWDEV-----KDRLHKSALGLSG--G----QQQRLCIARALAVK 167
Query: 822 PSIIFMDEPTSGLD 835
P ++ MDEPTS LD
Sbjct: 168 PEVLLMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 3e-09
Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 16/212 (7%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGGYPKVQHTFA 736
L +I + G ++G +G+GK+TL L+G + G ++ I G + K+Q
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQG-IR 76
Query: 737 RISGYCEQN-DIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSL 795
++ G QN + TVEE + F P I+++ + V+ L I L+ ++
Sbjct: 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR---VDRALAEIGLEKYRHR- 132
Query: 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRT 855
LS Q + + +A L P + DE TS LD + V+ +K + E G+T
Sbjct: 133 ----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKT 188
Query: 856 VVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+V H +++ D +I+M G+I+ G
Sbjct: 189 IVYITH--NLEELHDADRIIVMDR-GKIVLEG 217
|
Length = 274 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 3e-09
Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 26/217 (11%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFA 736
L ++G R G + L+G +GAGK+TL+ ++G +G G I+ G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELA 71
Query: 737 RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL-DGIKYSL 795
R Y Q +P W L+ KT+ E +N+V + L D + S
Sbjct: 72 RHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRST 123
Query: 796 VGLPGVSGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLDARAAAIVMRAVKNVV 850
L G QR RL + + ANP+ ++ +DEP + LD + + R + +
Sbjct: 124 NQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179
Query: 851 ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ G +V + H + + A L+K G+++ SG
Sbjct: 180 QQGLAIVMSSHDLNHTLRHA-HRAWLLK-RGKLLASG 214
|
Length = 248 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 3e-09
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 18/205 (8%)
Query: 693 TALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRI---GGYPKVQHTFARISGYCEQNDI 747
TA+ G SG+GKTTL+ +++G R G I + R R GY Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 748 HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807
P+++V ++ + R P + IEL GI + L LPG LS
Sbjct: 86 LFPHLSVRGNLRYGMK-RARPSERRISFERV-------IELLGIGHLLGRLPG--RLSGG 135
Query: 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV-ETGRTVVCTIHQPSID 866
+++R+ I L+++P ++ MDEP + LD ++ ++ + E G ++ H +
Sbjct: 136 EKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-E 194
Query: 867 IFEAFDDLILMKNGGRIIYSGPLGQ 891
+ D ++++++ GR+ +GP+ +
Sbjct: 195 VLRLADRVVVLED-GRVAAAGPIAE 218
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 53/229 (23%), Positives = 83/229 (36%), Gaps = 57/229 (24%)
Query: 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQ-YDLHIA 60
L G G GKTTL L+G + + SG + NG + +K+ Y+ Q D +
Sbjct: 29 IALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLF 85
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
+VRE + + D N Q
Sbjct: 86 TDSVREELLLGL-------------------------KELD-------------AGNEQA 107
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
+ +LK L L + P +SGGQK+RL ++ L DE ++GLD
Sbjct: 108 ETVLKDLDLYALKER---HP--LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNM 162
Query: 181 FQIVSFLKHLVHITDATALIS----LLQPAPETFDLFDDVMLMAEGKIV 225
++ ++ L A +I+ L + D V+L+A G IV
Sbjct: 163 ERVGELIRELAAQGKAVIVITHDYEFL------AKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 4e-09
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 27/228 (11%)
Query: 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDV--LSGRKTGG--IIEG-DIRIGGYP 729
K +Q L++++ G + ++G SGAGK+TL+ L R T G I++G D+
Sbjct: 16 KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNS 75
Query: 730 KVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD 789
++ +I + ++ S TV +V L +P+ ++K K V E+L
Sbjct: 76 ELTKARRQIGMIFQHFNLLSSR-TVFGNVALPLELDNTPKDEIKRK---VTELL------ 125
Query: 790 GIKYSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 844
+LVGL S LS Q++R+ IA L +NP ++ DE TS LD ++
Sbjct: 126 ----ALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILE 181
Query: 845 AVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891
+K + G T++ H+ +D+ + D + + + G +I G + +
Sbjct: 182 LLKEINRRLGLTILLITHE--MDVVKRICDCVAVISNGELIEQGTVSE 227
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 4e-09
Identities = 57/206 (27%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 690 GILTALMGVSGAGKTTLMDVLSG--RKTGG--IIEGDIRIGGYPKVQ--HTFARISGYCE 743
G + +MG+SG+GK+T + +L+ T G I+G+ I V+ + G
Sbjct: 19 GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGE-NIMKQSPVELREVRRKKIGMVF 77
Query: 744 QNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSG 803
Q P++T+ ++ L PE + K KA L+ +K LVGL
Sbjct: 78 QQFALFPHMTILQNTSLGPELLGWPEQERKEKA-----------LELLK--LVGLEEYEH 124
Query: 804 -----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVV 857
LS ++R+ +A L A P I+ MDE S LD + +K + T +T+V
Sbjct: 125 RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIV 184
Query: 858 CTIHQPSIDIFEAF---DDLILMKNG 880
H D+ EA D +++MK G
Sbjct: 185 FITH----DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 4e-09
Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 668 KKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG 727
K G + +L +L+ + + G AL+G SG+GK+TL+ +L+G G G++ + G
Sbjct: 14 KSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVG 71
Query: 728 YPKVQ-------HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
P Q A+ G+ Q+ + P + E+V A LR + A
Sbjct: 72 QPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGA---- 127
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
+E G+ L LP + LS +++R+ +A P ++F DEPT LD
Sbjct: 128 --KALLEQLGLGKRLDHLP--AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 5e-09
Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 42/193 (21%)
Query: 672 FNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731
+N+KK L+ ++ F P +TAL+G SG+GK+TL+ ++ + + P+V
Sbjct: 15 YNKKKA--LNSVSLDFYPNEITALIGPSGSGKSTLLRSIN--RMNDLN---------PEV 61
Query: 732 QHTFARISGYCEQNDIHSPNI-TVE--------------------ESVIFSAWLRLSPEI 770
T + + Y N I+SP TV+ E+V++ LRL
Sbjct: 62 TITGSIV--YNGHN-IYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYG--LRLKGIK 116
Query: 771 DLKTKAEFVNEVLQTIEL-DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 829
D + E V + L+ + D +K L GLS Q++R+ IA L +P II +DE
Sbjct: 117 DKQVLDEAVEKSLKGASIWDEVKDRL--HDSALGLSGGQQQRVCIARVLATSPKIILLDE 174
Query: 830 PTSGLDARAAAIV 842
PTS LD +A +
Sbjct: 175 PTSALDPISAGKI 187
|
Length = 252 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 5e-09
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFA-- 736
+L +++ + G + A++G SG+GK+TL+ +L G T GD+ G P + + A
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 737 -----RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI 791
+ G+ Q P+ T E+V + ++ ++A E+L + L+
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRAL---EMLAAVGLEHR 138
Query: 792 KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 839
S LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 139 ANHRP-----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 5e-09
Identities = 58/226 (25%), Positives = 94/226 (41%), Gaps = 33/226 (14%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGGYPKVQHT 734
+L ++ G +T ++G +G GKTTL+ L G K+G I I P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----P 69
Query: 735 FARIS---GYCEQNDIHSPNITVEES--VIFSAWLRLSPEIDLKTKAEFVNE---VLQTI 786
R Y Q P +TVEE+ +A R S +I + + E VL+
Sbjct: 70 HERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIP-----DEIYELFPVLK-- 122
Query: 787 ELDGIKYSLVGLPGVSG-LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 845
++G G G LS Q+++L IA LV P ++ +DEPT G+ + R
Sbjct: 123 -------EMLGRRG--GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRV 173
Query: 846 VKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891
++ + G + + Q +D D + GR++ SG +
Sbjct: 174 IRRLRAEGGMAILLVEQ-YLDFARELADRYYVMERGRVVASGAGDE 218
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 6e-09
Identities = 62/202 (30%), Positives = 88/202 (43%), Gaps = 34/202 (16%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGG--- 727
Q L I +TAL+G SG GK+TL+ D++ G K I G + + G
Sbjct: 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDI 72
Query: 728 YPKVQHTFARIS-GYCEQNDIHSPN---ITVEESVIFSAWLRLSPEIDLKTKAEFVNEVL 783
Y + RI G Q PN +++ E+V + LR D K E V L
Sbjct: 73 YGNIDVADLRIKVGMVFQK----PNPFPMSIYENVAYG--LRAQGIKDKKVLDEVVERSL 126
Query: 784 QTIEL-DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 842
+ L D +K L GLS Q++RL IA + P +I MDEPTS LD I
Sbjct: 127 RGAALWDEVKDRLKSH--AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALD----PIA 180
Query: 843 MRAVKNVVETGR---TVVCTIH 861
++ ++E + T+V H
Sbjct: 181 THKIEELMEELKKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 7e-09
Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVL--------SGRKTGGII--EGDIRIGGYP 729
+ D++ F +TA++G SG GK+T++ + S R TG I+ + DI G
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 730 KVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL- 788
V + R G Q P +++ ++VI A +L+ ++ E V L+ + L
Sbjct: 80 PV--SIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALW 135
Query: 789 DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
D +K L LS Q++RL IA + P +I MDEP S LD
Sbjct: 136 DEVKDRLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 7e-09
Identities = 64/247 (25%), Positives = 108/247 (43%), Gaps = 27/247 (10%)
Query: 667 MKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDI 723
M+ F +K L ++ G L+G +G+GK+TL+ L+G +G II +
Sbjct: 13 MEGTPFEKKALD---NVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGV 69
Query: 724 RIGGYPKVQHTFAR-----ISGYCEQNDIHSPNITVEESVIFSAW-LRLSPEIDLKTKAE 777
I KV+ + R + Y E T+E+ + F L LS E E
Sbjct: 70 DITD-KKVKLSDIRKKVGLVFQYPEYQLFEE---TIEKDIAFGPINLGLSEE-------E 118
Query: 778 FVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837
N V + + + G+ Y LS Q++R+ IA + P I+ +DEPT+GLD +
Sbjct: 119 IENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178
Query: 838 AAAIVMRAVKNV-VETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKV 896
++ +K + E T++ H S++ D I++ N G+ G + K
Sbjct: 179 GRDEILNKIKELHKEYNMTIILVSH--SMEDVAKLADRIIVMNKGKCELQGTPRE-VFKE 235
Query: 897 IDYFESI 903
++ ESI
Sbjct: 236 VETLESI 242
|
Length = 287 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 7e-09
Identities = 50/214 (23%), Positives = 99/214 (46%), Gaps = 33/214 (15%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYPKVQHTFA 736
L +I+ + +PG ++G +G+GK++L+ L ++E G I I G +
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFR-----LVELSSGSILIDGVD-----IS 69
Query: 737 RISGYCEQNDIHSPNITV--EESVIFSAWLR--LSPEIDLKTKAEFVNEVLQTIELDG-I 791
+I +D+ S I++ ++ V+FS +R L P + E + + L+ + L +
Sbjct: 70 KIG----LHDLRS-RISIIPQDPVLFSGTIRSNLDPF-GEYSDEE-LWQALERVGLKEFV 122
Query: 792 KYSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 846
+ GL V LS QR+ L +A L+ I+ +DE T+ +D A++ + +
Sbjct: 123 ESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI 182
Query: 847 KNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880
+ TV+ H+ +D D ++++ G
Sbjct: 183 REAF-KDCTVLTIAHR--LDTIIDSDRILVLDKG 213
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 7e-09
Identities = 55/225 (24%), Positives = 97/225 (43%), Gaps = 29/225 (12%)
Query: 667 MKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIR 724
+ R + L D++ G L+G +GAGK+TL+ +L+G G + R
Sbjct: 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR 84
Query: 725 IGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSA-WLRLSP-EIDLKTKAEFVNEV 782
+ + F +P +T E++ + L LS EID E ++E+
Sbjct: 85 VSSLLGLGGGF-------------NPELTGRENIYLNGRLLGLSRKEID-----EKIDEI 126
Query: 783 LQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 842
++ EL LP V S+ + RL A+ P I+ +DE + DA
Sbjct: 127 IEFSELGDFID----LP-VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKC 181
Query: 843 MRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
R ++ +++ G+TV+ H PS I D ++++ G+I + G
Sbjct: 182 QRRLRELLKQGKTVILVSHDPSS-IKRLCDRALVLEK-GKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 7e-09
Identities = 59/193 (30%), Positives = 82/193 (42%), Gaps = 46/193 (23%)
Query: 672 FNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIR 724
+ +K L DIT + +TAL+G SG GK+TL+ D++ G + I GDI
Sbjct: 16 YGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR----ITGDIL 69
Query: 725 IGGYP-------------KVQHTFARISGYCEQNDIHSPN---ITVEESVIFSAWLRLSP 768
G K+ F R PN ++ E+V + R+
Sbjct: 70 YNGENIMDSGADVVALRRKIGMVFQR------------PNPFPKSIYENVAYGP--RIHG 115
Query: 769 EIDLKTKAEFVNEVLQTIEL-DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 827
E + KT V + L+ L D +K L LS Q++RL IA L NP +I M
Sbjct: 116 EKNKKTLDTIVEKSLKGAALWDEVKDRL--HDSALSLSGGQQQRLCIARTLAVNPEVILM 173
Query: 828 DEPTSGLDARAAA 840
DEP S LD A A
Sbjct: 174 DEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 8e-09
Identities = 61/233 (26%), Positives = 102/233 (43%), Gaps = 37/233 (15%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 737
Q L DIT G L+G SGAGK++L+ VL+ + G + I G F++
Sbjct: 16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGN---HFDFSK 70
Query: 738 ISGYCEQNDIHS------------PNITVEESVIFSAWLRLS--PEIDLKTKAEFVNEVL 783
D+ P++TV+E++I A R+ + +AE ++L
Sbjct: 71 TPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLI-EAPCRVLGLSKDQALARAE---KLL 126
Query: 784 QTIELDGI--KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 841
+ + L +Y L LS Q++R+ IA L+ P ++ DEPT+ LD A
Sbjct: 127 KRLRLKPYADRYPL-------HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
Query: 842 VMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSC 894
++ +K + ETG T V H+ +++ ++ G I+ G SC
Sbjct: 180 IVSIIKELAETGITQVIVTHE--VEVARKTASRVVYMENGHIV---EQGDASC 227
|
Length = 242 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 9e-09
Identities = 65/264 (24%), Positives = 115/264 (43%), Gaps = 61/264 (23%)
Query: 680 LSDITGTFRPGIL---TALMGVS---------------GAGKTTLMDVLSGR--KTGGII 719
LS+ T TF G AL G+S GAGK+TL++ ++G T G I
Sbjct: 4 LSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQI 63
Query: 720 E-GDIRIGGYPKVQH--TFARI-----SGYCEQNDIHSPNITVEESVIFSAWLR-----L 766
+ + + AR+ +G P +T+EE++ A R L
Sbjct: 64 LIDGVDVTKKSVAKRANLLARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGL 115
Query: 767 SPEIDLKTKAEFVNEVLQTIELDGIKYSL---VGLPGVSGLSTEQRKRLTIAVELVANPS 823
S ++ + ++ F L + L G++ L +GL LS QR+ L++ + + P
Sbjct: 116 SSALNERRRSSFRER-LARLGL-GLENRLSDRIGL-----LSGGQRQALSLLMATLHPPK 168
Query: 824 IIFMDEPTSGLDARAAAIVMRAVKNVVETGR-TVVCTIH--QPSIDIFEAFDDLILMKNG 880
I+ +DE T+ LD + A VM +VE + T + H + ++D + + ++M +
Sbjct: 169 ILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALD----YGNRLIMLHS 224
Query: 881 GRII--YSGPLGQHSCKVIDYFES 902
G+I+ +G S V+D +
Sbjct: 225 GKIVLDVTGEEKA-SLTVLDLIQM 247
|
Length = 263 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 37/229 (16%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR--KTGGIIEGDIRIGGYPKVQH---- 733
D++ PG + ++G SG+GKTTL++ LS R G + +R G +
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 734 ---TFARIS-GYCEQN--DIHSPNIT----VEESVIFSAWLRLSPEIDLKTKAEFVNEVL 783
R G+ Q+ D ++ + E ++ D++ A + L
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYG---DIRATAG---DWL 135
Query: 784 QTIELDGIKYSLVGLPGV-SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 842
+ +E+D + + LP SG +QR L IA LV +P ++FMDEPT GLD A +
Sbjct: 136 ERVEIDAAR--IDDLPTTFSG-GMQQR--LQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190
Query: 843 MRAVKN-VVETGRTVVCTIHQPSIDIFEA---FDDLILMKNGGRIIYSG 887
+ ++ V E G VV H D+ A L++MK GR++ SG
Sbjct: 191 LDLLRGLVRELGLAVVIVTH----DLAVARLLAHRLLVMK-QGRVVESG 234
|
Length = 258 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-08
Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 28/204 (13%)
Query: 673 NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPK 730
N+ + +L +T T PG + AL+G SG+GK+T+ +L + TGG + + G P
Sbjct: 490 NRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPL 545
Query: 731 VQHTFARISGYCEQNDIHSPNITV-EESVIFSAWLR--LSPEIDLKTKAEFVNEVLQTIE 787
VQ+ + + +H V +E V+FS +R ++ + E +
Sbjct: 546 VQY---------DHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANA 596
Query: 788 LDGIK------YSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 841
D I + VG G S LS Q++R+ IA LV P ++ +DE TS LDA +
Sbjct: 597 HDFIMEFPNGYDTEVGEKG-SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQL 655
Query: 842 VMRAVKNVVETGRTVVCTIHQPSI 865
+ + RTV+ H+ S
Sbjct: 656 LQESRS---RASRTVLLIAHRLST 676
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-08
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 25/188 (13%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVS-YNGYRLDEFVPQKTSAYISQYDLHIAEM 62
L+G G GK+TLL L+G+L SGEV+ G R+ ++ Q+ E
Sbjct: 34 LVGRNGAGKSTLLKILAGELEPD---SGEVTRPKGLRV-GYLSQEPPLD--------PEK 81
Query: 63 TVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAIS-VEGLEKNLQTD 121
TV + + +G G + + E+ + L D + + ++G + +
Sbjct: 82 TVLDYV-----IEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAE 136
Query: 122 YILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTF 181
L LG D V +SGG ++R+ ++ L +DE +N LD +
Sbjct: 137 EALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIE 190
Query: 182 QIVSFLKH 189
+ +LK
Sbjct: 191 WLEDYLKR 198
|
Length = 530 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 53/234 (22%), Positives = 95/234 (40%), Gaps = 19/234 (8%)
Query: 671 GFNQKK--LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 728
G K +L++++ + G L+G SG GK+TL +L G + +G + G
Sbjct: 16 GLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQ 73
Query: 729 PKVQ------HTFARISGYCEQNDIHS--PNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
Q F R Q+ + P +TV + I LR +D + +
Sbjct: 74 DLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQ--IIGEPLRHLTSLDESEQKARIA 131
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
E+L + L LP LS Q +R+ IA L P +I +DE S LD A
Sbjct: 132 ELLDMVGLR--SEDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQA 187
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSC 894
+++ ++ + + T I + + ++F + + + G+I+ + Q
Sbjct: 188 VILELLRKLQQAFGTAYLFITH-DLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 62/195 (31%), Positives = 88/195 (45%), Gaps = 24/195 (12%)
Query: 661 VDTPSAMKKRG--FNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLS 711
+ +P M+ RG F Q L DI+ F +TAL+G SG GK+T + D++
Sbjct: 1 MASPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIP 60
Query: 712 GRKTGGIIEGDIRIGGY----PKVQH-TFARISGYCEQNDIHSPNITVEESVIFSAWLRL 766
G + +EG+I + G P V R G Q P ++ E+V + LR+
Sbjct: 61 GAR----VEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYG--LRV 113
Query: 767 SPEIDLKTKAEFVNEVLQTIEL-DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 825
+ D AE V L+ L D +K L GLS Q++RL IA L P ++
Sbjct: 114 NGVKDKAYLAERVERSLRHAALWDEVKDRLH--ESALGLSGGQQQRLCIARALAVEPEVL 171
Query: 826 FMDEPTSGLDARAAA 840
MDEP S LD A
Sbjct: 172 LMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 2e-08
Identities = 68/295 (23%), Positives = 115/295 (38%), Gaps = 45/295 (15%)
Query: 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDI--RIG-----G 727
++L +I+ T G + ++G SGAGK+ LM VL G G I + G
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCG 70
Query: 728 YPKVQHTFARISGYC------EQNDIHSPNITV-------------------EESVIFSA 762
Y + C E+ D + + + + +
Sbjct: 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDN 130
Query: 763 WLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANP 822
L EI + K E V + IE+ + + + + LS +++R+ +A +L P
Sbjct: 131 VLEALEEIGYEGK-EAVGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKEP 187
Query: 823 SIIFMDEPTSGLDARAAAIVMRAVKN-VVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881
+ DEPT LD + A +V A++ V +G ++V T H P + I + D I ++NG
Sbjct: 188 FLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLENGE 246
Query: 882 RIIYSGPLGQHSCKVIDYF-ESIPGVLKIKDNY--NPATWMLEVSSSSIETELGV 933
P +V+ F E + V K + P + VS I + GV
Sbjct: 247 IKEEGTPD-----EVVAVFMEGVSEVEKECEVEVGEPIIKVRNVSKRYISVDRGV 296
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 671 GFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSG-RKTGGIIEGD 722
+ +K + L +I +TAL+G SG GK+TL+ D++ G R G ++
Sbjct: 10 FYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDG 67
Query: 723 IRIGGYPKVQHTFARISGYCEQNDIHSPN---ITVEESVIFSAWLRLSPEIDLKTKAEFV 779
I R G Q PN +++ +++ + RL D K E V
Sbjct: 68 QDIYDKKIDVVELRRRVGMVFQK----PNPFPMSIYDNIAYG--PRLHGIKDKKELDEIV 121
Query: 780 NEVLQTIEL-DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 838
E L+ L D +K L GLS Q++RL IA L P ++ +DEPTS LD A
Sbjct: 122 EESLKKAALWDEVKDRLHDSA--LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIA 179
Query: 839 AA 840
Sbjct: 180 TG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 61/210 (29%), Positives = 96/210 (45%), Gaps = 33/210 (15%)
Query: 689 PGILTALMGVSGAGKTTLMDVLSG---RKTGGII-EGDIRIGGYPKVQHTFARISGYCEQ 744
PG + AL+G +GAGK+T+M VL+G R G I+ G PK A I
Sbjct: 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE-AGIG----- 82
Query: 745 NDIHS-----PNITVEESVIF------SAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY 793
IH P +T+ E+ IF + + R ID K +++L + +++
Sbjct: 83 -IIHQELNLIPQLTIAEN-IFLGREFVNRFGR----IDWKKMYAEADKLLARL---NLRF 133
Query: 794 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETG 853
S L V LS +++ + IA L +I MDEPT L + R ++ + G
Sbjct: 134 SSDKL--VGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQG 191
Query: 854 RTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883
R +V H+ +IFE DD+ + ++G I
Sbjct: 192 RGIVYISHRLK-EIFEICDDVTVFRDGQFI 220
|
Length = 501 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 49/237 (20%), Positives = 97/237 (40%), Gaps = 60/237 (25%)
Query: 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS 711
L+ +V + + +++ Q+L +++ + G AL+G SG+GK+TL+
Sbjct: 1 LSINNVSF-----------SYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLL---- 45
Query: 712 GRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEID 771
++ GD+ IT++ + LS I
Sbjct: 46 -----QLLTGDL----------------------KPQQGEITLDGVPVSDLEKALSSLIS 78
Query: 772 LKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 831
+ + ++ D + +G S +R+RL +A L+ + I+ +DEPT
Sbjct: 79 VLNQRPYL--------FDTTLRNNLGRR----FSGGERQRLALARILLQDAPIVLLDEPT 126
Query: 832 SGLDARAAAIVMRAVKNVVETGRTVV-CTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
GLD ++ + V++ +T++ T H I E D ++ ++N G+II G
Sbjct: 127 VGLDPITERQLLSLIFEVLK-DKTLIWITHHLTGI---EHMDKILFLEN-GKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 66/250 (26%), Positives = 106/250 (42%), Gaps = 44/250 (17%)
Query: 652 LTFEDVQY-YVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVL 710
+ F+ V + Y D+ L+DI+ + G TAL+G +G+GK+T+
Sbjct: 6 VEFKHVSFTYPDSKKPA------------LNDISFSIPRGSWTALIGHNGSGKSTI---- 49
Query: 711 SGRKTGGIIEGD------IRIGGYPKVQHTFARIS---GYCEQN-DIHSPNITVEESVIF 760
+ G++ D I + G T I G QN D TV + V F
Sbjct: 50 -SKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAF 108
Query: 761 SAWLRLSPEIDLKTKAEFVNEVLQTIE-LDGIKYSLVGLPGVSGLSTEQRKRLTIAVELV 819
R P ++ V +VL + LD I P + LS Q++R+ IA L
Sbjct: 109 GLENRAVPRPEMIK---IVRDVLADVGMLDYIDSE----P--ANLSGGQKQRVAIAGILA 159
Query: 820 ANPSIIFMDEPTSGLDARAAAIVMRAVKNV-VETGRTVVCTIHQPSIDIFEA-FDDLILM 877
P II +DE TS LD +++ ++ + + TV+ H DI EA D +L+
Sbjct: 160 VEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITH----DIDEANMADQVLV 215
Query: 878 KNGGRIIYSG 887
+ G+++ G
Sbjct: 216 LDDGKLLAQG 225
|
Length = 282 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 57/239 (23%), Positives = 99/239 (41%), Gaps = 35/239 (14%)
Query: 669 KRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRI 725
K G + L DI+ G ++G +GAGK+TL+ +++ GI + G +++
Sbjct: 32 KGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIA-----GIYKPTSGKVKV 86
Query: 726 GGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSA-WLRLSP-EIDLKTKAEFVNEVL 783
G +++ E P +T E++ L L+ EID E V+E++
Sbjct: 87 TG---------KVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEID-----EKVDEII 132
Query: 784 QTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 843
+ EL P V S+ RL +V P I+ +DE + DA +
Sbjct: 133 EFAELGDFID----QP-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187
Query: 844 RAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFES 902
+ +VE +T+V H I + D I +++ G+I G + VI +E
Sbjct: 188 ERLNELVEKNKTIVLVSHDLGA-IKQYCDRAIWLEH-GQIRMEGSPEE----VIPAYEE 240
|
Length = 249 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 3e-08
Identities = 57/217 (26%), Positives = 104/217 (47%), Gaps = 22/217 (10%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII--EGDIRIGGYP----KV 731
L + T G AL+G SGAGKT+L++ L G + +G ++I G
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDP 418
Query: 732 QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPE-IDLKTKAEFVNEVLQTIELDG 790
+ +S + QN P+ T+ ++V+ S E + + +V+E L + G
Sbjct: 419 ESWRKHLS-WVGQNP-QLPHGTLRDNVLL-GNPDASDEQLQQALENAWVSEFLPLLP-QG 474
Query: 791 IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV 850
+ +G +GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+A+
Sbjct: 475 LDTP-IG-DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS 532
Query: 851 ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+T + HQ ++ +D + +M++ G+I+ G
Sbjct: 533 R-RQTTLMVTHQ--LEDLAQWDQIWVMQD-GQIVQQG 565
|
Length = 588 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 56/184 (30%), Positives = 84/184 (45%), Gaps = 21/184 (11%)
Query: 694 ALMGVSGAGKTTLM---DVLSGRKTGGIIEGDIRIGG----YPKVQHTFARIS-GYCEQN 745
ALMG SG GK+TL+ + L +EG++R+ G P V R G Q
Sbjct: 34 ALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQY 93
Query: 746 DIHSPNITVEESVI----FSAWLRLSPEIDLKTKAEFVNEVLQTIEL-DGIKYSLVGLPG 800
P++T+ ++V + ++ E+D E V L+ L D +K L P
Sbjct: 94 PNPFPHLTIYDNVAIGVKLNGLVKSKKELD-----ERVEWALKKAALWDEVKDRLNDYP- 147
Query: 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTI 860
S LS QR+RL IA L P I+ MDEPT+ +D A + + ++ T+V
Sbjct: 148 -SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEYTIVLVT 205
Query: 861 HQPS 864
H P+
Sbjct: 206 HSPA 209
|
Length = 253 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 51/188 (27%), Positives = 76/188 (40%), Gaps = 56/188 (29%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGYPK 730
Q L I +TAL+G SG GK+T + D++ K IEG++ + G
Sbjct: 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDGQ-- 70
Query: 731 VQHTFARISGYCEQNDI-----------HSPN---ITVEESVIFSAWLRLSPEID-LKTK 775
Y D+ PN +++ ++V + P +K K
Sbjct: 71 --------DIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG------PRTHGIKDK 116
Query: 776 A---EFVNEVLQTIEL-----DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 827
E V + L+ L D +K S +GL G Q++RL IA L P ++ M
Sbjct: 117 KKLDEIVEKSLKGAALWDEVKDRLKKSALGLSG------GQQQRLCIARALAVEPEVLLM 170
Query: 828 DEPTSGLD 835
DEPTS LD
Sbjct: 171 DEPTSALD 178
|
Length = 250 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 4e-08
Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 20/214 (9%)
Query: 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHT 734
L LS+I G LT ++G G GK++L+ + G + G + + P + T
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEAT 73
Query: 735 FARISGYCEQNDIHSP---NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI 791
+R + Y P N TVEE++ F SP + KA LQ ++D +
Sbjct: 74 RSR-NRYSVAYAAQKPWLLNATVEENITFG-----SPFNKQRYKAVTDACSLQP-DIDLL 126
Query: 792 KY---SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA--V 846
+ + +G G++ LS QR+R+ +A L N +I+F+D+P S LD + +M+ +
Sbjct: 127 PFGDQTEIGERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGIL 185
Query: 847 KNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880
K + + RT+V H+ + D +I MK+G
Sbjct: 186 KFLQDDKRTLVLVTHK--LQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 5e-08
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 9/162 (5%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 737
Q+L+DI+ G + AL+G SG+GKTTL+ +++G + G IR G V AR
Sbjct: 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT--SGHIRFHG-TDVSRLHAR 72
Query: 738 IS--GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSL 795
G+ Q+ ++TV +++ F L + P + A +V Q +E+ + +
Sbjct: 73 DRKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837
P + LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 131 DRYP--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 6e-08
Identities = 64/266 (24%), Positives = 110/266 (41%), Gaps = 42/266 (15%)
Query: 652 LTFEDV--QYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDV 709
+ F++V QY D +K FN K G T+++G +G+GK+T+ +
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPK-------------GQWTSIVGHNGSGKSTIAKL 54
Query: 710 LSGRKTGGIIEGDIRIGGYPKVQHTFARIS---GYCEQN-DIHSPNITVEESVIFSAWLR 765
+ G + G+I F ++ G QN D V+ V F
Sbjct: 55 MIGIEKVK--SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH 112
Query: 766 LSPEIDLKTKAEFVNEVLQTIE-LDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 824
P ++ V+E L+ ++ L+ Y P + LS Q++R+ IA L NPS+
Sbjct: 113 AVPYDEMH---RRVSEALKQVDMLERADYE----P--NALSGGQKQRVAIAGVLALNPSV 163
Query: 825 IFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFD-DLILMKNGGRI 883
I +DE TS LD A ++ V+ V + +I D+ EA + D +++ N G +
Sbjct: 164 IILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH---DLSEAMEADHVIVMNKGTV 220
Query: 884 IYSGPLGQHSCKVIDYFESIPGVLKI 909
G + F+ + +I
Sbjct: 221 YKEG-------TPTEIFDHAEELTRI 239
|
Length = 269 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 6e-08
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 37/196 (18%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 739
L +++ R G + +L G +GAGK+TLM VLSG G EG+I G R +
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNI-RDT 79
Query: 740 GYCEQND---IHS-----PNITVEESVIFSAWLRLSPEIDLKTKAEFVN---------EV 782
E+ IH ++V E+ IF L EI T ++ ++
Sbjct: 80 ---ERAGIAIIHQELALVKELSVLEN-IF-----LGNEI---TPGGIMDYDAMYLRAQKL 127
Query: 783 LQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 842
L ++LD I P V L Q++ + IA L ++ +DEPT+ L A++
Sbjct: 128 LAQLKLD-IN---PATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVL 182
Query: 843 MRAVKNVVETGRTVVC 858
+ ++++ G + C
Sbjct: 183 LDIIRDLKAHG--IAC 196
|
Length = 506 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 7e-08
Identities = 60/231 (25%), Positives = 95/231 (41%), Gaps = 29/231 (12%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI------IEGDIRIGGYPKVQ 732
+L D++ PG +TAL+G +GAGK+TL+ L+G TGG + GD+ + G P
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 733 ---HTFARISGYCEQNDIHSPNITVEESVIFSAW--LRLSPEIDLKTKAEFVNEVLQTIE 787
AR+ Q + + E V+ + R + + + Q +
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDG----EIAWQALA 131
Query: 788 LDGIKYSLVGLPGVSGLSTEQRKRLTIAVEL---------VANPSIIFMDEPTSGLDARA 838
L G +LVG V+ LS + R+ A L P + +DEPT+ LD
Sbjct: 132 LAGAT-ALVG-RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAH 189
Query: 839 AAIVMRAVKNVVETGRTVVCTI-HQPSIDIFEAFDDLILMKNGGRIIYSGP 888
++ V+ + V I H P++ A D I M G I+ G
Sbjct: 190 QHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA--DRIAMLADGAIVAHGA 238
|
Length = 272 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 7e-08
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 21/220 (9%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP----KVQHTF 735
L I RPG L G +GAGK+TLM +LSG G +G+I G P ++ T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 736 ARISGYCEQNDIHSPNITVEESVIFSAWLRLS------PEIDLKTKAEFVNEVLQTIELD 789
Q P ++V E++ + L + L+ K +L+ ++LD
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAK-----NLLRELQLD 131
Query: 790 GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNV 849
+ V Q++ + IA L ++ +DEP+S L + I++ ++++
Sbjct: 132 ADNVTR----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL 187
Query: 850 VETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889
G V C ++ +A D I + G+ + + +
Sbjct: 188 KAHG--VACVYISHKLNEVKAVCDTICVIRDGQHVATKDM 225
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 7e-08
Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGG-- 727
L I+ + A +G SG GK+T + D++ + +EG+IRI G
Sbjct: 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRN 71
Query: 728 -YPKVQHT--FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQ 784
Y K + G Q P ++ E+V + LR++ D + V E L+
Sbjct: 72 IYDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLK 128
Query: 785 TIEL-DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 842
L D +K L LS Q++RL IA + +PS++ MDEP S LD + A V
Sbjct: 129 GAALWDEVKDKLK--ESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
|
Length = 250 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 7e-08
Identities = 59/256 (23%), Positives = 101/256 (39%), Gaps = 60/256 (23%)
Query: 672 FNQK---KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR--KTGGIIEGDIRIG 726
FN+K +L+ L +++ G A++G +G+GKTT ++ L+ G IE +
Sbjct: 12 FNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFK-- 69
Query: 727 GYPKVQHTFARISGYCEQNDIHSP------NI---------------------TVEESVI 759
K + E+ I I T+E+ +I
Sbjct: 70 -DEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDII 128
Query: 760 FSAW-LRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP------GVSGLSTEQRKRL 812
F + +S E K A+++ LVGL LS Q++R+
Sbjct: 129 FGPVSMGVSKEEAKKRAAKYI--------------ELVGLDESYLQRSPFELSGGQKRRV 174
Query: 813 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSID-IFEAF 871
+A L P + DEPT+GLD + ++ N+ + G+T++ H +D + E
Sbjct: 175 ALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH--DLDNVLEWT 232
Query: 872 DDLILMKNGGRIIYSG 887
I K+ G+II G
Sbjct: 233 KRTIFFKD-GKIIKDG 247
|
Length = 305 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 8e-08
Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 32/226 (14%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY----PKV 731
Q+L +I G + ++G SG+GK+TL+ ++ + I GD+ + G PKV
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVNDPKV 70
Query: 732 Q-HTFARISGYCEQNDIHSPNITVEESVIFSA-WLRLSPEIDLKTKAEFVNEVLQTIELD 789
+ +G Q P++T E+V+F +R + + + + +A E+L
Sbjct: 71 DERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQAR---ELL------ 121
Query: 790 GIKYSLVGL-------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 842
+ VGL P S LS Q++R+ IA L P ++ DEPTS LD V
Sbjct: 122 ----AKVGLAERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEV 175
Query: 843 MRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
++ ++++ E G T+V H+ I E ++ + GRI G
Sbjct: 176 LKVMQDLAEEGMTMVIVTHE--IGFAEKVASRLIFIDKGRIAEDGD 219
|
Length = 240 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 9e-08
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMT 63
L+G GCGK+TLL ++G + SGEV +G + P Y+ Q D + +T
Sbjct: 35 LVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLT 89
Query: 64 VRETIDFSARCQGTG-----HRADSMKEVIKLEKLAGIFP 98
V + + QG RA+ + E++ L +P
Sbjct: 90 VLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP 129
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 9e-08
Identities = 60/222 (27%), Positives = 91/222 (40%), Gaps = 45/222 (20%)
Query: 636 AGPKRGKMVLPFE-PLTLTFEDVQYYVDTPSAMKKRGF---NQKKLQLLSDITGTFRPGI 691
A P LP + P+ L ED++ V P K GF L+ + I+ T R G
Sbjct: 260 AEPSGDPPPLPEDAPVLLEVEDLR--VWFPI---KGGFLRRTVDHLRAVDGISLTLRRGQ 314
Query: 692 LTALMGVSGAGKTTLMDVLSGRKTGGII--EGDIRIGGYPKVQHTFARISGYCEQNDIH- 748
L+G SG+GK+TL G +I +G+IR G + + + +
Sbjct: 315 TLGLVGESGSGKSTL-----GLALLRLIPSQGEIRFDGQDIDGLSRKEMRPL--RRRMQV 367
Query: 749 ---------SPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP 799
SP +TV + +I P++ + + V E L+ VGL
Sbjct: 368 VFQDPYGSLSPRMTVGQ-IIEEGLRVHEPKLSAAERDQRVIEALEE----------VGLD 416
Query: 800 GVS------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
+ S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 417 PATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 50/228 (21%), Positives = 87/228 (38%), Gaps = 60/228 (26%)
Query: 9 GCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSA-------YISQ-YDLHIA 60
G GK+TLL+ L G + SGEV NG L + ++ + ++ Q ++L +
Sbjct: 41 GSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL-LP 96
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
++TV E ++ +AG A + + V GLE L
Sbjct: 97 DLTVLENVELPL-------------------LIAGKSAGRRKRAAEELLEVLGLEDRLLK 137
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDE-ISNGLDSST 179
++ SGGQ++R+ ++ + + DE N LDS T
Sbjct: 138 KKPSEL-------------------SGGQQQRVAIARALINNPKIILADEPTGN-LDSKT 177
Query: 180 TFQIVSFLKHLVHITDATALISLLQPA---PETFDLFDDVMLMAEGKI 224
+++ L+ L T ++ PE D V+ + +GKI
Sbjct: 178 AKEVLELLRELNKERGKTIIM-----VTHDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 39/188 (20%)
Query: 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQY--DLHI 59
+LG G GK+TLL+ L+G L GEV+ +G + + +S D H+
Sbjct: 364 VAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHL 420
Query: 60 AEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQ 119
+ TVRE + AR T + E + L PD GL
Sbjct: 421 FDTTVRENLRL-ARPDATDEELWAALERVGLADWLRALPD-------------GL----- 461
Query: 120 TDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSST 179
DT++G +SGG+++RL ++ L +DE + LD+ T
Sbjct: 462 --------------DTVLG-EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAET 506
Query: 180 TFQIVSFL 187
+++ L
Sbjct: 507 ADELLEDL 514
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 43/226 (19%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGYPKVQ 732
L+ I+ T G A++G SGAGK+T++ DV SG T I DIR Q
Sbjct: 279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT--IDGQDIRD----VTQ 332
Query: 733 HTFARISGYCEQ-----NDIHSPNI------TVEESVIFSAWLRLSPEIDLKTKAEFVNE 781
+ R G Q ND + NI E V +A +A +++
Sbjct: 333 QSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAA------------EAAQIHD 380
Query: 782 VLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 841
+Q++ +G + VG G+ LS +++R+ IA ++ NP I+ +DE TS LD
Sbjct: 381 FIQSLP-EGYD-TGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQA 437
Query: 842 VMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ A++ V GRT + H+ S I +A D++I++ N GRI+ G
Sbjct: 438 IQAALREVSA-GRTTLVIAHRLST-IIDA-DEIIVLDN-GRIVERG 479
|
Length = 497 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 29/159 (18%)
Query: 690 GILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----TFARISGYCEQN 745
G TA++G +G GK+TL+ LS T G + + G +QH AR G QN
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDG-EHIQHYASKEVARRIGLLAQN 89
Query: 746 DIHSPNITVEESV---------IFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLV 796
+ITV+E V +F+ W K E V + +Q GI + +
Sbjct: 90 ATTPGDITVQELVARGRYPHQPLFTRWR--------KEDEEAVTKAMQAT---GITH--L 136
Query: 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
V LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 137 ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 51/219 (23%), Positives = 95/219 (43%), Gaps = 17/219 (7%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTT----LMDVLSGRKTGGIIEGDIRIGGYPKVQHT 734
L+ D+ + + G + AL+G SG+GK+ ++ +L T G+I + G P + +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 735 F-ARISGYCEQNDIHS--PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI 791
R QN + P T+ I + K + E L+ + L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLS---KQARALILEALEAVGLPDP 115
Query: 792 KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE 851
+ L P LS +R+ IA+ L+ P + DEPT+ LD A V++ ++ + +
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 852 T-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889
G ++ H + + D++ +M + GRI+ G +
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDD-GRIVERGTV 210
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 18/205 (8%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 739
L + T + G +L+G SG GK+TL++++SG G + + G + R+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT--SGGVILEGKQITEPGPDRMV 58
Query: 740 GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP 799
+ QN P +TV E+ I A R+ P++ + V E I L G+ + P
Sbjct: 59 VF--QNYSLLPWLTVREN-IALAVDRVLPDLSKSERRAIVEE---HIALVGLTEAADKRP 112
Query: 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGR-TVVC 858
G LS ++R+ IA L P ++ +DEP LDA + + + E R TV+
Sbjct: 113 G--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM 170
Query: 859 TIHQPSIDIFEAF---DDLILMKNG 880
H D+ EA D ++++ NG
Sbjct: 171 VTH----DVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCT 859
G LS QR+RL IA LV P I+ DE TS LD R AIV +++ + T R V+
Sbjct: 585 GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVT-RIVIA- 642
Query: 860 IHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
H+ S I A D I + + GR++ G
Sbjct: 643 -HRLST-IRNA--DRIYVLDAGRVVQQGT 667
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 667 MKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIG 726
++ F L +++ T + G + AL+G +G+GK+TL+ ++G G+I I
Sbjct: 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILID 59
Query: 727 GYP---KVQHTFARISGYCEQ 744
G R GY Q
Sbjct: 60 GKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-07
Identities = 61/242 (25%), Positives = 91/242 (37%), Gaps = 59/242 (24%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKV-SGEVSYNGYRLDEFVPQ-------KTSAYISQY 55
++G G GK+TL AL G L ++ SGEV +G L + K A I Q
Sbjct: 40 IVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQD 99
Query: 56 DLHIAE--MTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEG 113
+ MT+ + I + R G G RA++ K ++L + G+ D Y
Sbjct: 100 PMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRY-------- 151
Query: 114 LEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISN 173
P +SGG ++R+ + + L DE +
Sbjct: 152 --------------------------P--HQLSGGMRQRVMIAMALALKPKLLIADEPTT 183
Query: 174 GLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDL------FDDVMLMAEGKIVYH 227
LD +T QI+ LK L L T DL D V++M +G+IV
Sbjct: 184 ALDVTTQAQILDLLKDLQRELGMAVLFI-------THDLGVVAELADRVVVMYKGEIVET 236
Query: 228 GP 229
GP
Sbjct: 237 GP 238
|
Length = 539 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 2e-07
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQP 863
LS +R+ + IA L N ++ +DEPT+ L + + ++ + G V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 864 SIDIFEAFDDLILMKNG 880
++FE D + ++++G
Sbjct: 143 D-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-07
Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 28/218 (12%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP--KVQHTFAR 737
L +I + AL+G +G+GK+TL +L G + EG+IR+ G P + H+ R
Sbjct: 357 LQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPLSSLSHSVLR 414
Query: 738 ISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL--------D 789
Q D P + + F A + L +I E V + L+T++L D
Sbjct: 415 QGVAMVQQD---PVVLADT---FLANVTLGRDIS----EEQVWQALETVQLAELARSLPD 464
Query: 790 GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNV 849
G+ Y+ +G G + LS Q++ L +A LV P I+ +DE T+ +D+ + +A+ V
Sbjct: 465 GL-YTPLGEQG-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAV 522
Query: 850 VETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
E T+V H+ S I EA D IL+ + G+ + G
Sbjct: 523 REH-TTLVVIAHRLST-IVEA--DTILVLHRGQAVEQG 556
|
Length = 592 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 65/243 (26%), Positives = 102/243 (41%), Gaps = 35/243 (14%)
Query: 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS 711
+TF+ V++ + ++R L D+ + G A++G +G+GK+TL+ L+
Sbjct: 3 ITFQKVEHRYQYKTPFERRA--------LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLN 54
Query: 712 G--RKTGGIIE-GD--IRIGGYPKVQHTFARISGYCEQNDIHSP-NITVEESVIFSAWLR 765
G + T G + G+ I G K + G Q H TVE+ + F
Sbjct: 55 GLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF 114
Query: 766 LSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP------GVSGLSTEQRKRLTIAVELV 819
E D K KA E+++ LVGLP LS Q +R+ IA L
Sbjct: 115 GVSEEDAKQKAR---EMIE----------LVGLPEELLARSPFELSGGQMRRVAIAGVLA 161
Query: 820 ANPSIIFMDEPTSGLDARAAAIVMRAVKNV-VETGRTVVCTIHQPSIDIFEAFDDLILMK 878
P ++ +DEPT+GLD + +M + E G T V H D D +++M
Sbjct: 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH 220
Query: 879 NGG 881
G
Sbjct: 221 KGT 223
|
Length = 290 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-07
Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 28/213 (13%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 737
L ++ RP + ALMG +GAGK+TL+ L G +K G I G + ++
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQGKE-IDFKSSK 68
Query: 738 ISGYCEQNDIHSP-NITVEESVIFSAWLRLSPEIDLKTKAEFVNEV-----LQTI--ELD 789
+ + +H N+ ++ SV+ + WL P TK FV++ + I ELD
Sbjct: 69 EALENGISMVHQELNLVLQRSVMDNMWLGRYP-----TKGMFVDQDKMYRDTKAIFDELD 123
Query: 790 GIKYSLVGLP--GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVK 847
I P V+ LS Q + + IA N I+ MDEPTS L + + ++
Sbjct: 124 -IDID----PRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIR 178
Query: 848 NVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880
+ E G +V H+ +IF+ D++ ++++G
Sbjct: 179 KLKERGCGIVYISHKME-EIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-07
Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 25/168 (14%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 737
+++S++ T G L+G SG GKTT++ +++G +T G I + G + H A
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQ-DITHVPA- 83
Query: 738 ISGYCEQNDIHS--------PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD 789
E +++ P++TV E+V F ++ +P ++ + V E L+ ++L+
Sbjct: 84 -----ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPR---VMEALRMVQLE 135
Query: 790 GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837
LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 136 EFAQR-----KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 27/240 (11%)
Query: 667 MKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDV---LSGRKTGGIIEGDI 723
K+ ++ ++L DI+ F G + ++G SGAGK+TL+ + L G I+ +
Sbjct: 6 FKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGV 65
Query: 724 RIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVL 783
I + R G Q H TV++++ + L+ +D E+ L
Sbjct: 66 DIKTIDVID--LRRKIGMVFQQP-HLFEGTVKDNIEYGPMLKGEKNVD----VEYY---L 115
Query: 784 QTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 843
+ L+ +Y+ V LS + +R++IA L NP ++ +DEPTS LD + I+
Sbjct: 116 SIVGLNK-EYAT---RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE 171
Query: 844 RAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFES 902
+ + TV+ H +++ + D N G ++ K D+F +
Sbjct: 172 ELIVKLKNKMNLTVIWITH--NMEQAKRIGDYTAFLNKGILVEYA-------KTYDFFTN 222
|
Length = 241 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 3e-07
Identities = 58/241 (24%), Positives = 91/241 (37%), Gaps = 64/241 (26%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNG---YRLDE---FVPQKTSAYISQYDL 57
L+G G GK+TL A+ G SG + ++G +L + +K + Q D
Sbjct: 36 LVGESGSGKSTLARAILG---LLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQ-DP 91
Query: 58 HIA---EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDV-DAYMKAISVEG 113
+ MT+ E I R G + ++ KE + L L G+ +V + Y
Sbjct: 92 MSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-LLLLVGVGLPEEVLNRY-------- 142
Query: 114 LEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT-TGELIVGPTRALFMDEIS 172
P +SGGQ++R+ L + P + L DE +
Sbjct: 143 --------------------------P--HELSGGQRQRVAIARALALNP-KLLIADEPT 173
Query: 173 NGLDSSTTFQIVSFLKHLVHITDATAL-----ISLLQPAPETFDLFDDVMLMAEGKIVYH 227
+ LD S QI+ LK L T L + ++ + D V +M GKIV
Sbjct: 174 SALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVA------KIADRVAVMYAGKIVEE 227
Query: 228 G 228
G
Sbjct: 228 G 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 46/242 (19%), Positives = 83/242 (34%), Gaps = 62/242 (25%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQY-------D 56
++G G GK+TL L+G S SG + +G L K Q
Sbjct: 38 IVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSS 94
Query: 57 LHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEK 116
L+ TV + R + + + ++ + GL
Sbjct: 95 LN-PRRTVGRILS-------EPLRPHGLSKSQQR--------IAELLDQV------GLPP 132
Query: 117 NLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLD 176
+ + +SGGQ++R+ ++ + L +DE ++ LD
Sbjct: 133 SFLDRRPHE-------------------LSGGQRQRIAIARALIPEPKLLILDEPTSALD 173
Query: 177 SSTTFQIVSFLKHLVHITDATAL-----ISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231
S QI++ L L T L ++L++ + D + +M G+IV GP
Sbjct: 174 VSVQAQILNLLLELKKERGLTYLFISHDLALVE------HMCDRIAVMDNGQIVEIGPTE 227
Query: 232 YI 233
+
Sbjct: 228 EL 229
|
Length = 252 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 62/209 (29%), Positives = 92/209 (44%), Gaps = 38/209 (18%)
Query: 656 DVQYYVDTPSAMKKRGFN----QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLM---- 707
DV D +A++ R N K Q L DI+ +TA +G SG GK+TL+
Sbjct: 15 DVLNLSDEQTALEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFN 72
Query: 708 ---DVLSGRKTGGIIEGDIRIGGY----PKVQ-HTFARISGYCEQNDIHSPN---ITVEE 756
D++ + IEG+IR+ G KV R G Q PN ++ E
Sbjct: 73 RMNDLVDNCR----IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQR----PNPFPKSIYE 124
Query: 757 SVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL-DGIKYSL--VGLPGVSGLSTEQRKRLT 813
+V++ LRL + + E V L+ L D +K L GLS Q++RL
Sbjct: 125 NVVYG--LRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAF----GLSGGQQQRLV 178
Query: 814 IAVELVANPSIIFMDEPTSGLDARAAAIV 842
IA + P ++ +DEPTS LD + +
Sbjct: 179 IARAIAIEPEVLLLDEPTSALDPISTLKI 207
|
Length = 272 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 4e-07
Identities = 51/243 (20%), Positives = 90/243 (37%), Gaps = 57/243 (23%)
Query: 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA- 60
L+G G GKTTL + ++G S SG V + G + P + + L IA
Sbjct: 33 VGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIAR------LGIAR 83
Query: 61 ---------EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISV 111
+TV E + A + K E+
Sbjct: 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEER------------------- 124
Query: 112 EGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 171
E E+ + +L+ +GL AD G+ +S GQ++RL + + L +DE
Sbjct: 125 EARERARE---LLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEP 176
Query: 172 SNGLDSSTTFQIVSFLKHLVHITDATALI-----SLLQPAPETFDLFDDVMLMAEGKIVY 226
+ GL+ T ++ ++ L T L+ L+ L D ++++ G+++
Sbjct: 177 AAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLV------MGLADRIVVLNYGEVIA 230
Query: 227 HGP 229
G
Sbjct: 231 EGT 233
|
Length = 250 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 5e-07
Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 49/230 (21%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSA---YISQYDLHIA 60
++G G GK+TLL L+G + SG V +G + + P Y+ Q D+ +
Sbjct: 35 IIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLF 90
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
T+R+ I A P D + ++A + G+ T
Sbjct: 91 YGTLRDNITLGA-------------------------PLADDERILRAAELAGV-----T 120
Query: 121 DYILKI-LGLDICADTIVGDPMR-RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSS 178
D++ K GLD +G+ R RG+SGGQ++ + ++ L +DE ++ +D +
Sbjct: 121 DFVNKHPNGLD----LQIGE--RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMN 174
Query: 179 TTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+ ++ L+ L + D T +I +P+ DL D +++M G+IV G
Sbjct: 175 SEERLKERLRQL--LGDKTLIIITHRPS--LLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 5e-07
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMT 63
+LG GCGK+TLL ++G + SGEV +G + P Y+ Q D + +T
Sbjct: 34 ILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTG--PGPDIGYVFQEDALLPWLT 88
Query: 64 VRETIDFSARCQGTG-----HRADSMKEVIKLEKLAGIFPD 99
V + + +G RA + E++ L +P
Sbjct: 89 VLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH 129
|
Length = 248 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 5e-07
Identities = 65/204 (31%), Positives = 95/204 (46%), Gaps = 31/204 (15%)
Query: 697 GVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY------PKVQHTFARISGYCEQNDIHSP 750
G SG GK+TL+ +++G + I GD+ IG P R G Q+ P
Sbjct: 36 GPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPA-----ERGVGMVFQSYALYP 88
Query: 751 NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810
+++V E++ F L + + ++ + V EVLQ L L P LS QR+
Sbjct: 89 HLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHL------LDRKP--KALSGGQRQ 140
Query: 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA--VKNVVETGRTVVCTIHQPSIDIF 868
R+ I LVA PS+ +DEP S LDA A + MR + GRT++ H D
Sbjct: 141 RVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTH----DQV 195
Query: 869 EAFD--DLILMKNGGRIIYSG-PL 889
EA D I++ + GR+ G PL
Sbjct: 196 EAMTLADKIVVLDAGRVAQVGKPL 219
|
Length = 369 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 5e-07
Identities = 54/177 (30%), Positives = 82/177 (46%), Gaps = 14/177 (7%)
Query: 692 LTALMGVSGAGKTTLM---DVLSGRKTGGIIEGDIRIGGY----PKVQHTFARIS-GYCE 743
+TA++G SG GKTTL+ + ++ G +EG I G P++ T R G
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVF 90
Query: 744 QNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL-DGIKYSLVGLPGVS 802
Q P +++ ++V F R+ V E L+ L D +K L PG
Sbjct: 91 QKPTPFP-MSIYDNVAFG--PRIHGVKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTR 146
Query: 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCT 859
LS Q++RL IA L P +I +DEPTS LD A + + ++ + E V+ T
Sbjct: 147 -LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVT 202
|
Length = 250 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 6e-07
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGY---RLDEFVPQKTSAYISQYDLHIA 60
LLG G GKTTL+ + G L SGE+ G + E V ++ Y+ +
Sbjct: 31 LLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRRI-GYLPEEPSLYE 86
Query: 61 EMTVRETIDFS 71
+TVRE + S
Sbjct: 87 NLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 6e-07
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 63/258 (24%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS-AYISQ-YDL--HI 59
LLG GCGKTTLL ++G S SGE+ +G + + P+K + Q Y L H
Sbjct: 36 LLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPH- 91
Query: 60 AEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQ 119
MTV E + F G R K IK V+ ++ + +EG
Sbjct: 92 --MTVEENVAF-----GLKVRKKLKKAEIKAR----------VEEALELVGLEGFAD--- 131
Query: 120 TDYILKILGLDICADTIVGDPMRRG--VSGGQKKRLTTGE-LIVGPTRALFMDEISNGLD 176
R+ +SGGQ++R+ L+ P + L +DE + LD
Sbjct: 132 ----------------------RKPHQLSGGQQQRVALARALVPEP-KVLLLDEPLSALD 168
Query: 177 SSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKF 236
+ Q+ LK L T + + E + D + +M +G+I G I
Sbjct: 169 AKLREQMRKELKELQRELGITFVY-VTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI--- 224
Query: 237 FEDCGFRCPERKGVADFL 254
+ P + VADF+
Sbjct: 225 -----YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 60/231 (25%), Positives = 101/231 (43%), Gaps = 43/231 (18%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMT 63
++G G GKTTLLS L+G+ S SG+V+ G R F +T ++L
Sbjct: 62 IVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRR---FGKGET-----IFEL------ 104
Query: 64 VRETIDF-SARCQGTGHRADSMKEVIKLEKLAGIF-----PDPDVDAYMKAISVEGLEKN 117
R+ I S+ +++++V+ L+G F D+ A A +
Sbjct: 105 -RKRIGLVSSELHERFRVRETVRDVV----LSGFFASIGIYQEDLTAEDLAAAQW----- 154
Query: 118 LQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDS 177
+L++LG AD G +S G+++R+ +V L +DE + GLD
Sbjct: 155 -----LLELLGAKHLADRPFGS-----LSQGEQRRVLIARALVKDPELLILDEPAQGLDL 204
Query: 178 STTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
Q+++ L+ L A AL+ + A E F +L+ EG++V G
Sbjct: 205 IAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-07
Identities = 60/214 (28%), Positives = 108/214 (50%), Gaps = 18/214 (8%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 739
L +I G AL+G SG+GK+T+ ++L+ + I EG+I + G+ +T A +
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLT--RFYDIDEGEILLDGHDLRDYTLASLR 416
Query: 740 GYC---EQNDIHSPNITVEESVIFSAWLRLSPE-IDLKTKAEFVNEVLQTIE--LDGIKY 793
QN +H N T+ ++ ++ + S E I+ + + + + ++ LD
Sbjct: 417 NQVALVSQN-VHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLD---- 471
Query: 794 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETG 853
+++G GV LS QR+R+ IA L+ + I+ +DE TS LD + + A+ + ++
Sbjct: 472 TVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKN 529
Query: 854 RTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
RT + H+ S I +A D IL+ G I+ G
Sbjct: 530 RTSLVIAHRLST-IEKA--DEILVVEDGEIVERG 560
|
Length = 582 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 6e-07
Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 20/216 (9%)
Query: 689 PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIH 748
G AL+G SG+GK+T++ +L + I EG I++ G ++ H R ++ H
Sbjct: 25 AGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEG-EQLYHMPGRNGPLVPADEKH 81
Query: 749 SPNITVEESVIFSAW--------LRLSPEIDLKTK----AEFVNEVLQTIELDGIKYSLV 796
+ + ++F ++ L E + AE ++ +++ G+
Sbjct: 82 LRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD 141
Query: 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV-ETGRT 855
+P + LS Q++R+ IA L P ++ DE TS LD V+ ++ + E T
Sbjct: 142 HMP--AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLT 199
Query: 856 VVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891
++ H+ + F D + + GRI+ G +
Sbjct: 200 MLLVTHE--MGFAREFADRVCFFDKGRIVEQGKPDE 233
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 7e-07
Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 46/178 (25%)
Query: 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAE 61
+L G G GKTTLL ++G L +G + +G +D+ + Y+ +
Sbjct: 31 LVLTGPNGSGKTTLLRLIAGLL---PPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPA 87
Query: 62 MTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTD 121
+TV E ++F A G + D+ A ++A+ + L +L
Sbjct: 88 LTVAENLEFWAAFLGGE--------------------ELDIAAALEAVGLAPLA-HLPFG 126
Query: 122 YILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSST 179
Y+ S GQK+R+ L+V +DE + LD++
Sbjct: 127 YL----------------------SAGQKRRVALARLLVSNRPIWILDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 8e-07
Identities = 53/240 (22%), Positives = 87/240 (36%), Gaps = 61/240 (25%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
+T L+G G GK+TLL A+ G L S SGE+ G + + + Y+ Q
Sbjct: 32 ITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDR 88
Query: 61 E--MTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNL 118
+TV++ + G + + VD ++ + +E L
Sbjct: 89 SFPITVKDVVLL-----GRYGK-------KGWFRRLNKKDKEKVDEALERVGMEDLRDRQ 136
Query: 119 QTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRAL-------FMDEI 171
+G+ +SGGQK+R+ L+ RAL +DE
Sbjct: 137 ------------------IGE-----LSGGQKQRV----LL---ARALAQNPDLLLLDEP 166
Query: 172 SNGLDSSTTFQIVSFLKHLVHITDATALISL--LQPAPETFDLFDDVMLMAEGKIVYHGP 229
G+D + +I LK L T L+ L FD V+ + ++ GP
Sbjct: 167 FTGVDVAGQKEIYDLLKELRQ-EGKTVLMVTHDLGLVM---AYFDRVICLN-RHLIASGP 221
|
Length = 254 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 8e-07
Identities = 55/249 (22%), Positives = 91/249 (36%), Gaps = 87/249 (34%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNG---YRLDE------------FVP 45
++G G GK+TLL+ L G + SGEV +G +L E FV
Sbjct: 32 FVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVF 88
Query: 46 QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAY 105
Q ++L + ++T E ++ LAG+
Sbjct: 89 Q-------SFNL-LPDLTALENVELPLL-------------------LAGVPKK------ 115
Query: 106 MKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGV---SGGQKKRLTTGELIVGP 162
E+ + + +L+ +GL GD + SGGQ++R V
Sbjct: 116 ---------ERRERAEELLERVGL--------GDRLNHYPSELSGGQQQR-------VAI 151
Query: 163 TRAL-------FMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDD 215
RAL DE + LDS T +++ L+ L T ++ PE + D
Sbjct: 152 ARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD--PELAEYADR 209
Query: 216 VMLMAEGKI 224
++ + +GKI
Sbjct: 210 IIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 8e-07
Identities = 41/182 (22%), Positives = 69/182 (37%), Gaps = 41/182 (22%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDL 57
L+G G GK+TLL+ L G + G ++ NG L + + A++ Q+
Sbjct: 350 RVALVGPSGAGKSTLLNLLLGFV---DPTEGSIAVNGVPLADADADSWRDQIAWVPQHP- 405
Query: 58 HIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKN 117
+ T+ E I + PD +A+ GL++
Sbjct: 406 FLFAGTIAENIRLAR-------------------------PDASDAEIREALERAGLDEF 440
Query: 118 LQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDS 177
+ L + DT +G+ G+SGGQ +RL + L +DE + LD+
Sbjct: 441 VAA------LPQGL--DTPIGEG-GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDA 491
Query: 178 ST 179
T
Sbjct: 492 ET 493
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 55/228 (24%), Positives = 87/228 (38%), Gaps = 47/228 (20%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGY--RLDEFVPQKTSAYISQYDLHIAE 61
LLG G GKTT + L+ L + SG + G+ + ++ + Q E
Sbjct: 31 LLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDE 87
Query: 62 MTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTD 121
+T E + AR G V G E+ + D
Sbjct: 88 LTGWENLYIHARLYG----------------------------------VPGAERRERID 113
Query: 122 YILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE-LIVGPTRALFMDEISNGLDSSTT 180
+L +GL AD +V + SGG ++RL L+ P LF+DE + GLD T
Sbjct: 114 ELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRP-EVLFLDEPTIGLDPQTR 167
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+ +++ L T L++ E L D V ++ G+I+ G
Sbjct: 168 AHVWEYIEKLKEEFGMTILLT-THYMEEAEQLCDRVAIIDHGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 8e-07
Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 33/168 (19%)
Query: 672 FNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGD--IRIGG 727
F Q+++ LSD++ +PG + L+G +GAGK+TL+ V+ G G+I+ + +RIG
Sbjct: 14 FGQRRV--LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGY 71
Query: 728 YPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE 787
P+ + D P +TV + +LRL P TK E + L+ ++
Sbjct: 72 VPQKLYL-----------DTTLP-LTV------NRFLRLRP----GTKKEDILPALKRVQ 109
Query: 788 LDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
L+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 110 AG----HLIDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 8e-07
Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 38/228 (16%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE----GDIRIGGY----- 728
Q L DIT G L+G SGAGK++L+ VL+ ++E G + I G
Sbjct: 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLN------LLEMPRSGTLNIAGNHFDFS 69
Query: 729 ----PKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLR---LSPEIDLKTKAEFVNE 781
K R G Q P++TV++++I A R LS + +AE +
Sbjct: 70 KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLI-EAPCRVLGLSKD-QALARAE---K 124
Query: 782 VLQTIELDGI--KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 839
+L+ + L ++ L LS Q++R+ IA L+ P ++ DEPT+ LD
Sbjct: 125 LLERLRLKPYADRFPL-------HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEIT 177
Query: 840 AIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
A ++ ++ + ETG T V H+ + A ++ M+N G I+ G
Sbjct: 178 AQIVSIIRELAETGITQVIVTHEVEVARKTA-SRVVYMEN-GHIVEQG 223
|
Length = 242 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 58/235 (24%), Positives = 88/235 (37%), Gaps = 57/235 (24%)
Query: 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDE------FVPQKTSAYISQY 55
++G G GK+TLL A+ G L SG + G L++ +VPQ+ S
Sbjct: 28 LAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRIGYVPQRRSI---DR 81
Query: 56 DLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLE 115
D I +VR+ + G L G+F K
Sbjct: 82 DFPI---SVRDVV-------LMG-----------LYGHKGLFRRLSKADKAKV------- 113
Query: 116 KNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGL 175
D L+ +GL AD +G+ +SGGQ++R+ +V L +DE G+
Sbjct: 114 -----DEALERVGLSELADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGV 163
Query: 176 DSSTTFQIVSFLKHLVHITDATALISL--LQPAPETFDLFDDVMLMAEGKIVYHG 228
D T I L+ L T L+ L + FD V+L+ +V G
Sbjct: 164 DPKTQEDIYELLREL-RREGMTILVVTHDLGLVL---EYFDRVLLLN-RTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 50/228 (21%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS-AYISQYDLHI 59
+ LLG G GK+TLL ++G L SG + NG + ++ Q+
Sbjct: 28 LVALLGPSGSGKSTLLRIIAG-LEQ--PDSGRIRLNGQDATRVHARDRKIGFVFQHYALF 84
Query: 60 AEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQ 119
+TVR+ I F + + K ++E+L ++ + +EGL
Sbjct: 85 KHLTVRDNIAFGLEIR----KHPKAKIKARVEEL------------LELVQLEGL----- 123
Query: 120 TDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSST 179
GD +SGGQ++R+ + + L +DE LD+
Sbjct: 124 ------------------GDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKV 165
Query: 180 TFQIVSFLKHL---VHITDATALISLLQPAPETFDLFDDVMLMAEGKI 224
++ S+L+ L VH+T T ++ Q E ++ D +++M+ GKI
Sbjct: 166 RKELRSWLRKLHDEVHVT--TVFVTHDQ--EEAMEVADRIVVMSNGKI 209
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-06
Identities = 62/252 (24%), Positives = 95/252 (37%), Gaps = 74/252 (29%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSL--KVSGEVSYNG---YRLDEFVPQK----TSAYISQ 54
++G G GK+ L A+ G L V GE+ ++G L E +K A I Q
Sbjct: 36 IVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQ 95
Query: 55 YDLH----IAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAIS 110
+ + MT+ + I EV++L +A +AI
Sbjct: 96 DPMTSLNPV--MTIGDQI----------------AEVLRLHGKG----LSKKEAKERAIE 133
Query: 111 VEGLEKNLQTDYILKILGLDICADTIVGDPMRRG------VSGGQKKRLTTGELIVGPTR 164
+L+++G+ DP RR +SGG ++R+ + +
Sbjct: 134 ------------LLELVGIP--------DPERRLKSYPHELSGGMRQRVMIAMALALNPK 173
Query: 165 ALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDL------FDDVML 218
L DE + LD + QI+ LK L TALI + T DL D V +
Sbjct: 174 LLIADEPTTALDVTVQAQILDLLKELQREKG-TALILI------THDLGVVAEIADRVAV 226
Query: 219 MAEGKIVYHGPR 230
M G+IV GP
Sbjct: 227 MYAGRIVEEGPV 238
|
Length = 316 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 59/245 (24%), Positives = 97/245 (39%), Gaps = 73/245 (29%)
Query: 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAE 61
T +LG G GK+TL L+G L S SG + ++G
Sbjct: 35 TAILGGNGAGKSTLFQNLNGILKPS---SGRILFDG------------------------ 67
Query: 62 MTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGI-FPDPD---------VDAYMKAISV 111
+ ID+S K ++KL + G+ F DPD D A+++
Sbjct: 68 ----KPIDYSR------------KGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL 111
Query: 112 EGLEKNLQ--TDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMD 169
+ E ++ D LK G+ + D +S GQKKR+ ++V + L +D
Sbjct: 112 KLPEDEVRKRVDNALKRTGI-----EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLD 166
Query: 170 EISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDL------FDDVMLMAEGK 223
E + GLD +I+ L + T +I+ T D+ D+V +M EG+
Sbjct: 167 EPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA-------THDIDIVPLYCDNVFVMKEGR 219
Query: 224 IVYHG 228
++ G
Sbjct: 220 VILQG 224
|
Length = 283 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 47/202 (23%), Positives = 95/202 (47%), Gaps = 26/202 (12%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLM---DVLSGRKTGGII------------EGD 722
++L ++ G + +++G SG+GK+T + + L G I+ +G
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78
Query: 723 IRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAW--LRLSPEIDLKTKAEFVN 780
+++ +++ R++ + ++ S ++TV E+V+ + L LS + + + +A
Sbjct: 79 LKVADKNQLRLLRTRLTMVFQHFNLWS-HMTVLENVMEAPIQVLGLSKQ-EARERAVKYL 136
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
+ E KY LS Q++R++IA L P ++ DEPTS LD
Sbjct: 137 AKVGIDERAQGKYP-------VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVG 189
Query: 841 IVMRAVKNVVETGRTVVCTIHQ 862
V+R ++ + E G+T+V H+
Sbjct: 190 EVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 20/203 (9%)
Query: 667 MKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGII--EG- 721
+K+ G+ ++L++I+ + R G A+ G SG GK+TL+ +++ T G + EG
Sbjct: 6 LKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 65
Query: 722 DIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNE 781
D+ + ++S YC Q + TVE+++IF W + D +
Sbjct: 66 DVSTLKPEAYRQ---QVS-YCAQTPALFGD-TVEDNLIFP-WQIRNRRPDRAAALDL--- 116
Query: 782 VLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAA 840
L L + ++ LS +++R+ + L P I+ +DE TS LD +
Sbjct: 117 -LARFALPDSILT----KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRN 171
Query: 841 IVMRAVKNVVETGRTVVCTIHQP 863
I + V E V+ H
Sbjct: 172 IEEMIHRYVREQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 23/201 (11%)
Query: 677 LQLLSDITGTFRPGILTALMGVSGAGKTTL---MDVLSGRKTGGII------------EG 721
++L ++ G + +++G SG+GK+T ++ L G I +G
Sbjct: 19 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDG 78
Query: 722 DIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNE 781
++ ++Q R+ G Q+ ++TV E+VI + L +KAE +
Sbjct: 79 QLKPADKRQLQRLRTRL-GMVFQHFNLWSHMTVLENVIEAPVHVLG-----VSKAEAIER 132
Query: 782 VLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 841
+ + GI P + LS Q++R+ IA L P ++ DEPTS LD
Sbjct: 133 AEKYLAKVGIAEKADAYP--AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGE 190
Query: 842 VMRAVKNVVETGRTVVCTIHQ 862
V++ ++++ E GRT+V H+
Sbjct: 191 VLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 30/196 (15%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG-----YPKVQHT 734
L ++ R G + L+G +GAGK+TL+ ++G G G I+ G +
Sbjct: 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWS--AAE 66
Query: 735 FARISGYCEQNDIHSPNITVEESVIFSAW-LRLSPEIDLKTKAEFVNEVLQTIELDGIKY 793
AR Y Q + V F L + + A +NEV + + LD
Sbjct: 67 LARHRAYLSQQQTPPFAMPV-----FQYLTLHQPDKTRTEAVASALNEVAEALGLD---- 117
Query: 794 SLVGLPGVSGLS-TE-QRKRLTIAVEL----VANPS--IIFMDEPTSGLDARAAAIVMRA 845
+G V+ LS E QR RL AV L NP+ ++ +DEP + LD A + R
Sbjct: 118 DKLGRS-VNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRL 175
Query: 846 VKNVVETGRTVVCTIH 861
+ + + G VV + H
Sbjct: 176 LSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 2e-06
Identities = 47/238 (19%), Positives = 89/238 (37%), Gaps = 64/238 (26%)
Query: 9 GCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP------------QKTSAYISQYD 56
G GKTTL + +SG L + SG V ++G + P Q +
Sbjct: 36 GAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLF----- 87
Query: 57 LHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEK 116
E+TV E + +A+ + TG + + +
Sbjct: 88 ---PELTVLENVMVAAQAR-TGSGLLLARARREEREARE--------------------- 122
Query: 117 NLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLD 176
+ + +L+ +GL AD G+ +S GQ++RL + + L +DE + GL+
Sbjct: 123 --RAEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLN 175
Query: 177 SSTTFQIVSFLKHLVHITDATALI-----SLLQPAPETFDLFDDVMLMAEGKIVYHGP 229
T ++ ++ L T L+ ++ L D V ++ +G+++ G
Sbjct: 176 PEETEELAELIRELRE-RGITVLLVEHDMDVV------MSLADRVTVLDQGRVIAEGT 226
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 63/309 (20%), Positives = 109/309 (35%), Gaps = 76/309 (24%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDE------------FVPQKT 48
+ LLG G GK+TLL ++G + +G + NG L + FV Q
Sbjct: 30 LVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQ-- 84
Query: 49 SAYISQYDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKA 108
Y L MTV + I F + + ++ V+ ++
Sbjct: 85 -----HYAL-FPHMTVADNIAFGLKVRKERPSEAEIR--------------ARVEELLRL 124
Query: 109 ISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE-LIVGPTRALF 167
+ +EGL Y ++ SGGQ++R+ L V P + L
Sbjct: 125 VQLEGLADR----YPAQL-------------------SGGQRQRVALARALAVEP-KVLL 160
Query: 168 MDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYH 227
+DE LD+ ++ +L+ L T + E +L D V+++ +G+I
Sbjct: 161 LDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQV 219
Query: 228 GPRSYICKFFEDCGFRCPERKGVADFLQEV--ISRKDQEQYWHRKDHPYGYVSIDQFITK 285
GP + + P + VA FL EV + + H G +
Sbjct: 220 GPPDEV--------YDHPASRFVARFLGEVNVLPGEVILGQLQVGAHDIG---LPLQPLP 268
Query: 286 FKTSHLGLK 294
+ L ++
Sbjct: 269 DGKADLYVR 277
|
Length = 345 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 50/239 (20%), Positives = 89/239 (37%), Gaps = 62/239 (25%)
Query: 2 TLLLGHPGCGKTTLLSALSG--KLSHSLKVSGEVSYNGYRLDE-----FVP--QKTSAYI 52
T + G G GK+TLL ++G K G + NG L + +P Q+ +
Sbjct: 26 TGIFGASGAGKSTLLRCIAGLEKPDG-----GTIVLNGTVLFDSRKKINLPPQQRKIGLV 80
Query: 53 SQ-YDL--HIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAI 109
Q Y L H + VRE + F + + S+ E++ +
Sbjct: 81 FQQYALFPH---LNVRENLAFGLKRKRNREDRISVDELL---------------DLL--- 119
Query: 110 SVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMD 169
GL+ L Y ++ SGG+K+R+ + L +D
Sbjct: 120 ---GLDH-LLNRYPAQL-------------------SGGEKQRVALARALAAQPELLLLD 156
Query: 170 EISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
E + LD + Q++ LK + + + + E L D +++M +G++ Y G
Sbjct: 157 EPFSALDRALRLQLLPELKQIKKNLNIPVIF-VTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 60/252 (23%), Positives = 92/252 (36%), Gaps = 73/252 (28%)
Query: 2 TLLLGHPGCGKTTLLSALSG--KLSHSLKVSGEVSYNG---YRLDE----------FVPQ 46
T L+G GCGK+TLL L+ L GEV +G Y LD V Q
Sbjct: 29 TALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQ 88
Query: 47 KTSAYISQYDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYM 106
K + + ++ + + + R G IKL++ +
Sbjct: 89 KPNPF---------PGSIYDNVAYGLRLHG-----------IKLKE------------EL 116
Query: 107 KAISVEGLEKNLQTDYILKILGLDICADTIVGDPMR-RGVSGGQKKRLTTGE-LIVGPTR 164
E L K D V D + G+SGGQ++RL L P
Sbjct: 117 DERVEEALRKAALWDE--------------VKDRLHALGLSGGQQQRLCLARALANEP-E 161
Query: 165 ALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALI---SLLQPAPETFDLFDDVMLMAE 221
L +DE ++ LD +T +I + L + T +I ++ Q A + D +
Sbjct: 162 VLLLDEPTSALDPISTAKIEELIAELKK--EYTIVIVTHNMQQAA----RVADRTAFLLN 215
Query: 222 GKIVYHGPRSYI 233
G++V GP I
Sbjct: 216 GRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 56/230 (24%), Positives = 95/230 (41%), Gaps = 49/230 (21%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMT 63
+LG G GK+TLL L+G G ++ NG + + E
Sbjct: 369 ILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIA----------------SLDEQA 409
Query: 64 VRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYI 123
+RETI Q + ++++ ++L PD + A+ GLEK L++
Sbjct: 410 LRETISVLT--QRVHLFSGTLRDNLRLAN-----PDASDEELWAALQQVGLEKLLESAP- 461
Query: 124 LKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQI 183
GL +T +G+ R +SGG+++RL ++ +DE + GLD T Q+
Sbjct: 462 ---DGL----NTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQV 513
Query: 184 VSFLKHLVHITDATALISLLQPAPETFDL-----FDDVMLMAEGKIVYHG 228
++ L H T L+ T L D ++++ GKI+ G
Sbjct: 514 LALL--FEHAEGKTLLMV-------THRLRGLERMDRIIVLDNGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-06
Identities = 67/247 (27%), Positives = 105/247 (42%), Gaps = 42/247 (17%)
Query: 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIEGDIRIGGYPKVQHTFARI 738
D++ T G + AL+G SG GK+TL+ +L+G + G I+ + + P Q R
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RP 92
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
Q+ P++TVE+++ F + D KAE + V + + L ++
Sbjct: 93 INMMFQSYALFPHMTVEQNIAFGL------KQDKLPKAEIASRVNEMLGLVHMQEFAKRK 146
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVV 857
P LS QR+R+ +A L P ++ +DEP LD + + V +++E G T V
Sbjct: 147 P--HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCV 204
Query: 858 CTIHQPSIDIFEAFDDLILMKNGGRI----------------IYSGPLGQHSCKVIDYFE 901
H D EA M GRI IY P ++S + I
Sbjct: 205 MVTH----DQEEA------MTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVN 254
Query: 902 SIPGVLK 908
GVLK
Sbjct: 255 VFEGVLK 261
|
Length = 377 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 53/171 (30%), Positives = 78/171 (45%), Gaps = 22/171 (12%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK---TGGIIEGDIRIGG---YPK- 730
Q L+DI +TAL+G SG GK+T + L+ + IEG++ + G Y K
Sbjct: 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77
Query: 731 --VQHTFARISGYCEQNDIHSPN---ITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQT 785
V R+ G Q PN +++ ++V + R+ D K + V L+
Sbjct: 78 VDVVELRKRV-GMVFQK----PNPFPMSIYDNVAYGP--RIHGIKDKKELDKIVEWALKK 130
Query: 786 IEL-DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
L D +K L LS Q++RL IA + P +I MDEPTS LD
Sbjct: 131 AALWDEVKDDLK--KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (121), Expect = 2e-06
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 16/228 (7%)
Query: 671 GFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS---GRKTGGIIEGDIRIGG 727
GF K + L ++ F +T+LMG +G+GKTT + L+ + +G GD+ +GG
Sbjct: 30 GFAGKTV--LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87
Query: 728 YPKVQH----TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVL 783
+ F R G Q P ++ + +L P + + A+ +
Sbjct: 88 RSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQ--ARLT 145
Query: 784 QTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 843
+ D +K L P LS Q++ L +A L NP ++ +DEPTS LD +
Sbjct: 146 EVGLWDAVKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIE 203
Query: 844 RAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891
++++ + TV+ H ++ D + GR++ GP Q
Sbjct: 204 EFIRSLADR-LTVIIVTH--NLAQAARISDRAALFFDGRLVEEGPTEQ 248
|
Length = 276 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 40/222 (18%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTL-------MDVLSGRKTGGIIEGDIRIGGYPKV 731
+L + +PG + G +G+GK++L +D+ G+ +I+G I I P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI---VIDG-IDISKLP-- 89
Query: 732 QHTF-ARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG 790
HT +R+S I +++ ++FS +R + + + K + + E L+ +L
Sbjct: 90 LHTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 791 IKYSLVGLPGVSGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 842
+ SL G G+ + TE QR+ +A V SI+ MDE T+ +D I+
Sbjct: 138 MVKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENIL 195
Query: 843 MRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884
+ V RTVV H+ S I +A DL+L+ + G ++
Sbjct: 196 QKVVMTAF-ADRTVVTIAHRVS-TILDA--DLVLVLSRGILV 233
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 50/185 (27%), Positives = 75/185 (40%), Gaps = 46/185 (24%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIEGDIRIGGYPKVQ 732
K + L I F +TAL+G SG GK+T + L+ G I G++ + G
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG----- 71
Query: 733 HTFARISGYCEQNDIHSPN---------------------ITVEESVIFSAWLRLSPEID 771
+I++PN ++ E+VI+ LRL+ D
Sbjct: 72 ------------QNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYG--LRLAGVKD 117
Query: 772 LKTKAEFVNEVLQTIEL-DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 830
E V L+ + D +K L LS Q++R+ IA L P +I +DEP
Sbjct: 118 KAVLDEAVETSLKQAAIWDEVKDHL--HESALSLSGGQQQRVCIARVLAVKPDVILLDEP 175
Query: 831 TSGLD 835
TS LD
Sbjct: 176 TSALD 180
|
Length = 252 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 27/193 (13%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYP--KVQHT 734
L S ++ T G L + G +GAGKT+L+ +L+G R G++ G P + +
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD----AGEVLWQGEPIRRQRDE 71
Query: 735 FARISGYCEQNDIHSPNI----TVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG 790
+ + Y H P I T E++ F RL D E + E L + L G
Sbjct: 72 YHQDLLYLG----HQPGIKTELTALENLRFYQ--RLHGPGD----DEALWEALAQVGLAG 121
Query: 791 IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV 850
+ +P V LS Q++R+ +A + + +DEP + +D + A + +
Sbjct: 122 FED----VP-VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA 176
Query: 851 ETGRTVVCTIHQP 863
E G V+ T HQ
Sbjct: 177 EQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 57/202 (28%), Positives = 89/202 (44%), Gaps = 33/202 (16%)
Query: 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLM---DVLSGRKTGGIIEGDIRIGG---YPK 730
Q L D++ +TA++G SG GK+T + + ++ +EG++ G Y
Sbjct: 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111
Query: 731 VQHTFA--RISGYCEQNDIHSPN---ITVEESVIFSAWLRLSPE---IDLKTKAEFVNEV 782
A R G Q PN ++ ++V + L++ ID E V E
Sbjct: 112 DVDPVALRRRIGMVFQK----PNPFPKSIYDNVAYG--LKIQGYDGDID-----ERVEES 160
Query: 783 LQTIEL-DGIKYSLVGLPGVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 839
L+ L D +K L SG LS Q++RL IA + +P +I MDEP S LD A
Sbjct: 161 LRRAALWDEVKDQL----DSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVAT 216
Query: 840 AIVMRAVKNVVETGRTVVCTIH 861
+ + ++ + E TVV H
Sbjct: 217 SKIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 28/226 (12%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 737
++L + + G + A+MG +G+GK+TL V++G I+EGDI G +
Sbjct: 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80
Query: 738 IS------GYCEQNDIHSPNITVEESVIFSAWLRLS----------PEIDLKTKAEFVNE 781
+ + Q I P ++ + +LRL+ PE+D E +NE
Sbjct: 81 RAHLGIFLAF--QYPIEIPGVSNAD------FLRLAYNSKRKFQGLPELDPLEFLEIINE 132
Query: 782 VLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 841
L+ + +D S G SG ++KR I + + + +DE SGLD A I
Sbjct: 133 KLKLVGMDPSFLSRNVNEGFSG---GEKKRNEILQMALLDSELAILDETDSGLDIDALKI 189
Query: 842 VMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ + ++ + +++ H + + D + +M+N G+II +G
Sbjct: 190 IAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQN-GKIIKTG 234
|
Length = 252 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 51/185 (27%), Positives = 75/185 (40%), Gaps = 50/185 (27%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGYPK 730
+L ++ +TAL+G SG GK+T + D++ G + EG I + G
Sbjct: 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH----EGHIYLDG--- 69
Query: 731 VQHTFARISGYCEQNDIHSPNITVEE-----SVIF--------------SAWLRLSPEID 771
DI+ P + V E ++F + LR+ E D
Sbjct: 70 --------------VDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDD 115
Query: 772 LKTKAEFVNEVLQTIEL-DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 830
E V E L+ L D +K L GLS Q++RL IA + +P +I MDEP
Sbjct: 116 EDFIEERVEESLKAAALWDEVKDKLD--KSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173
Query: 831 TSGLD 835
S LD
Sbjct: 174 CSALD 178
|
Length = 250 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 2e-06
Identities = 58/196 (29%), Positives = 84/196 (42%), Gaps = 48/196 (24%)
Query: 667 MKKRGFN--QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR 724
+K RG N K Q+L +I F +TA++G SG GK+TL+ L+ + I+ G
Sbjct: 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALN--RMNDIVSG--- 59
Query: 725 IGGYPKVQHTFARISG--YCEQNDIHSPNITVEE----------------SVIFSAWLRL 766
AR+ G + +I+SPN+ V IF +
Sbjct: 60 -----------ARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDN-VAF 107
Query: 767 SPEIDLKTKAEFVNEVL-----QTIELDGIKYSL--VGLPGVSGLSTEQRKRLTIAVELV 819
P + T ++EV+ Q D +K +L GL LS Q++RL IA L
Sbjct: 108 GPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLA 163
Query: 820 ANPSIIFMDEPTSGLD 835
P +I MDEP S LD
Sbjct: 164 IEPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 62/222 (27%), Positives = 100/222 (45%), Gaps = 36/222 (16%)
Query: 673 NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYP 729
+Q+K L +D++ + G +++G +G+GK+T + R G++E G I I G
Sbjct: 17 DQEKYTL-NDVSFHVKQGEWLSIIGHNGSGKSTTV-----RLIDGLLEAESGQIIIDGDL 70
Query: 730 KVQHTFARIS---GYCEQN-DIHSPNITVEESVIFSAWLRLSPE-IDLKTKAEFVNEVLQ 784
+ I G QN D TVE+ V F L + I + E VNE L+
Sbjct: 71 LTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG----LENKGIPHEEMKERVNEALE 126
Query: 785 TIELDGIKYSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 839
LVG+ + LS Q++R+ IA + P II +DE TS LD
Sbjct: 127 ----------LVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGR 176
Query: 840 AIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNG 880
+++ +K + + TV+ H +D D +++MKNG
Sbjct: 177 LELIKTIKGIRDDYQMTVISITH--DLDEVALSDRVLVMKNG 216
|
Length = 279 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 3e-06
Identities = 55/230 (23%), Positives = 101/230 (43%), Gaps = 36/230 (15%)
Query: 671 GFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730
G+ +LSDI+ T + T ++G+SG+GK+TL +L G G+I + G+
Sbjct: 484 GYGSN---ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSL 538
Query: 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE 787
HT + Y Q E IFS + + + K +E+ E
Sbjct: 539 KDIDRHTLRQFINYLPQ-----------EPYIFSGSILENLLLGAKENVS-QDEIWAACE 586
Query: 788 LDGIKYSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 838
+ IK + +P S +S Q++R+ +A L+ + ++ +DE TS LD
Sbjct: 587 IAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTIT 646
Query: 839 AAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ V N++ +T++ H+ + + + D +I++ +G II G
Sbjct: 647 EK---KIVNNLLNLQDKTIIFVAHR--LSVAKQSDKIIVLDHGK-IIEQG 690
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 19/196 (9%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----- 733
+L DIT + +MG SG+GK+TL+ VL+ + I + I++ G KV +
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLN--RLIEIYDSKIKVDG--KVLYFGKDI 80
Query: 734 ------TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE 787
+ G Q P++++ +++ + L+ + + + V E L+ +
Sbjct: 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVG 138
Query: 788 LDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVK 847
L Y + P S LS Q++RLTIA L P ++ MDEPTS +D + + + +
Sbjct: 139 LWKEVYDRLNSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLIT 197
Query: 848 NVVETGRTVVCTIHQP 863
++ +V H P
Sbjct: 198 E-LKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 50/210 (23%), Positives = 83/210 (39%), Gaps = 32/210 (15%)
Query: 673 NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732
+L +L +++ T G AL G SGAGK+TL+ L G I V+
Sbjct: 17 GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYA--NYLPDSGRIL------VR 68
Query: 733 HT-----FARIS------------GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTK 775
H A+ S GY Q P ++ E V R P + +
Sbjct: 69 HEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARAR 128
Query: 776 AEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
A E+L + + + L P + S +++R+ IA +A+ I+ +DEPT+ LD
Sbjct: 129 AR---ELLARLNIPERLWHLP--P--ATFSGGEQQRVNIARGFIADYPILLLDEPTASLD 181
Query: 836 ARAAAIVMRAVKNVVETGRTVVCTIHQPSI 865
A +V+ + G ++ H +
Sbjct: 182 AANRQVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 48/215 (22%), Positives = 92/215 (42%), Gaps = 56/215 (26%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 739
L ++ + +L + GVSG+GK+TL+ G G R+ + F+R
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLP---KFSR-- 59
Query: 740 GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP 799
K F+++ LQ + G+ Y +G
Sbjct: 60 ----------------------------------NKLIFIDQ-LQFLIDVGLGYLTLGQK 84
Query: 800 GVSGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVV 857
+S LS + +R+ +A EL + P ++ +DEP++GL + ++ +K +++ G TV+
Sbjct: 85 -LSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVI 143
Query: 858 CTIHQPSIDIFEAFDDLILM-----KNGGRIIYSG 887
H D+ + D +I K+GG++++SG
Sbjct: 144 LIEHNL--DVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 59/249 (23%), Positives = 98/249 (39%), Gaps = 65/249 (26%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKT------SAYISQ 54
L+G G GK+TLL L+G + + SG V +G +++ + I Q
Sbjct: 29 FVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQ 85
Query: 55 -YDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEG 113
++L I ++V E + R L G+FP + K ++
Sbjct: 86 QFNL-IERLSVLENVLSG--------RLGRRS---TWRSLFGLFPKEE-----KQRALAA 128
Query: 114 LEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRAL------- 166
LE+ +GL A +SGGQ++R V RAL
Sbjct: 129 LER----------VGLLDKAYQRADQ-----LSGGQQQR-------VAIARALMQQPKLI 166
Query: 167 FMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDL----FDDVMLMAEG 222
DE LD +++ Q++ LK + T ++SL Q DL D ++ + +G
Sbjct: 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-----DLAREYADRIVGLKDG 221
Query: 223 KIVYHGPRS 231
+IV+ GP +
Sbjct: 222 RIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-06
Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 22/223 (9%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 739
L I T G + AL+G +GAGK+TLM +++G G + IGG P + T A+
Sbjct: 27 LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS--GTLEIGGNPCARLTPAKAH 84
Query: 740 GY----CEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTK-AEFVNEVLQTIELDGIKYS 794
Q + PN++V+E+++F L K + + + ++LD S
Sbjct: 85 QLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASMQKMKQLLAALGCQLDLD----S 136
Query: 795 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGR 854
G L R+ + I L+ + I+ +DEPT+ L + ++ ++ G
Sbjct: 137 SAGS-----LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGV 191
Query: 855 TVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVI 897
+V H+ +I + D + +M++G I SG S I
Sbjct: 192 GIVFISHKLP-EIRQLADRISVMRDGT-IALSGKTADLSTDDI 232
|
Length = 510 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 4e-06
Identities = 61/215 (28%), Positives = 101/215 (46%), Gaps = 17/215 (7%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS---GRKTGGI-IEG-DIRIGGYPKVQ 732
Q + D++ + G A++G +GAGKTTL+++L G I I+G DI ++
Sbjct: 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLR 408
Query: 733 HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIK 792
+ A + D N ++ E++ E+ KA ++ + +G
Sbjct: 409 KSIATVF-----QDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILK-RSNGYD 462
Query: 793 YSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET 852
+LVG G + LS +R+RL IA ++ N I+ +DE TS LD A V A+ + +
Sbjct: 463 -TLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAI-DALRK 519
Query: 853 GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
RT H+ S + A DL+L + GR+I G
Sbjct: 520 NRTTFIIAHRLST-VRNA--DLVLFLDQGRLIEKG 551
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 14/167 (8%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS--GRKTGGI-IEGDIRIGG----YPK 730
L +I + +TA++G SG GK+T + L+ + + + G++ G K
Sbjct: 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85
Query: 731 VQHTFARIS-GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL- 788
V R + G Q P ++ ++V + R+ + K E V + L+ + L
Sbjct: 86 VDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALW 142
Query: 789 DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
D +K L LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 143 DEVKDRLHT--QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 6e-06
Identities = 51/246 (20%), Positives = 99/246 (40%), Gaps = 75/246 (30%)
Query: 1 MTLLLGHPGCGKTTLLSAL-------SGKLSHSLKVSG----EVSYNGYRLDEFVPQKTS 49
L+G G GK+TL++ + SG + + G + + R +
Sbjct: 30 TVALVGPSGSGKSTLVNLIPRFYDVDSG----RILIDGHDVRDYTLASLR-------RQI 78
Query: 50 AYISQYDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAI 109
+SQ D+ + TV E I + G + +EV + + A
Sbjct: 79 GLVSQ-DVFLFNDTVAENIAY-------GRPGATREEVEEAARAANA------------- 117
Query: 110 SVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGV--SGGQKKRLTTGELIVGPTRALF 167
++I++ L DT++G+ RGV SGGQ++R+ ++ L
Sbjct: 118 ----------HEFIME---LPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKDPPILI 161
Query: 168 MDEISNGLDSSTTFQIVSFLKHLVHITDATALI-----SLLQPAPETFDLFDDVMLMAEG 222
+DE ++ LD+ + + + L+ L+ + T + S ++ A D ++++ +G
Sbjct: 162 LDEATSALDTESERLVQAALERLM--KNRTTFVIAHRLSTIENA-------DRIVVLEDG 212
Query: 223 KIVYHG 228
KIV G
Sbjct: 213 KIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 58/239 (24%), Positives = 94/239 (39%), Gaps = 55/239 (23%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNG--------YRLDE----FVPQKTSAY 51
++G G GKTTLL +SG+L+ +G V+Y Y + E + + +
Sbjct: 37 IVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGF 93
Query: 52 ISQYDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAY--MKAI 109
+ Q M V + R G R Y ++A
Sbjct: 94 VHQNPRDGLRMQVSAGGNIGERLMAIGARH-----------------------YGNIRAE 130
Query: 110 SVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMD 169
+ + LE+ ++I D I D + R SGG ++RL +V R +FMD
Sbjct: 131 AQDWLEE------------VEIDLDRI--DDLPRTFSGGMQQRLQIARNLVTRPRLVFMD 176
Query: 170 EISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
E + GLD S +++ L+ LV +I A L D +M+M +G++V G
Sbjct: 177 EPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARL-LADRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 14/211 (6%)
Query: 686 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISG----Y 741
RPG + A+MG +G+GK+TL L+GR+ + G + G ++ + +G
Sbjct: 23 EVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFM 82
Query: 742 CEQNDIHSPNIT----VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVG 797
Q + P ++ ++ ++ R +D + + E I L + L+
Sbjct: 83 AFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEE---KIALLKMPEDLLT 139
Query: 798 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRT-V 856
G S ++KR I V P + +DE SGLD A IV V ++ + R+ +
Sbjct: 140 RSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFI 199
Query: 857 VCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ T +Q +D + D + + GRI+ SG
Sbjct: 200 IVTHYQRILDYIKP--DYVHVLYQGRIVKSG 228
|
Length = 248 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 7e-06
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYP 729
L ++ + R G + AL+G +GAGK+TLM +LSG + G+I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD----SGEILVDGKE 63
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 7e-06
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 686 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQN 745
T RPG + ++G +G GK+T + +L+G + + P R G QN
Sbjct: 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE----DPPSWDEVIKRFRGTELQN 151
Query: 746 ---DIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG-- 800
++ + V ++ L P++ +K K V E+L+ ++ G +V G
Sbjct: 152 YFKKLYEGELRA---VHKPQYVDLIPKV-VKGK---VGELLKKVDERGKFDEVVERLGLE 204
Query: 801 ------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGR 854
VS LS + +R+ IA L+ + + F DEP+S LD R R ++ + E G+
Sbjct: 205 NVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGK 264
Query: 855 TVVCTIH 861
V+ H
Sbjct: 265 YVIVVEH 271
|
Length = 591 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 7e-06
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 36/174 (20%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTT----LMDVLSGRKTGGIIEGDIRIGGYPKVQHTF 735
+ +I+ T RPG L+G SG+GK+T L+ +++ + G+I G P H
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQP--LHNL 352
Query: 736 ARISG----------YCEQNDIHSPNITVEESVIFSAWLRL-SPEIDLKTKAEFVNEVLQ 784
R + + N +P + V + I LR+ P + + + V V++
Sbjct: 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQ--IIEEGLRVHQPTLSAAQREQQVIAVME 410
Query: 785 TIELDGI---KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
+ LD +Y + S QR+R+ IA L+ PS+I +DEPTS LD
Sbjct: 411 EVGLDPETRHRYP-------AEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 8e-06
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ---KTSAYISQYDL 57
++G G GK+TLL L + SGE+ +G L + + K AY+ Q D
Sbjct: 30 KVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLRKNIAYVPQ-DP 85
Query: 58 HIAEMTVRETI 68
+ T+RE I
Sbjct: 86 FLFSGTIRENI 96
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 8e-06
Identities = 56/253 (22%), Positives = 96/253 (37%), Gaps = 51/253 (20%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS-AYISQYDLHIAEM 62
L+G GCGKTTLL A++G + ++G ++ L P K A + Q +
Sbjct: 36 LIGKSGCGKTTLLRAIAG-FVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94
Query: 63 TVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDY 122
V + + F G RA M + E++A DA
Sbjct: 95 KVEDNVAF-------GLRAQKMPKADIAERVA--------DA------------------ 121
Query: 123 ILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQ 182
LK++GL D P + +SGG ++R+ I L +DE + LD++
Sbjct: 122 -LKLVGL---GDAAAHLPAQ--LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRAN 175
Query: 183 IVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG-PRSYICKFFEDCG 241
+ + L ++ + + L D +M +G++ HG P++
Sbjct: 176 MREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL--------- 226
Query: 242 FRCPERKGVADFL 254
+ P A+FL
Sbjct: 227 YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 8e-06
Identities = 50/243 (20%), Positives = 86/243 (35%), Gaps = 67/243 (27%)
Query: 2 TLLLGHPGCGKTTLLSALSGKLSHSLKV-SGEVSYNGYRLDEFVPQKTS----AYISQYD 56
LLG G GKTTLL + G L SG + ++G + P + + Y+ +
Sbjct: 29 VALLGRNGAGKTTLLKTIMG----LLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGR 84
Query: 57 LHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEK 116
E+TV E + A + R ++ V +L FP
Sbjct: 85 RIFPELTVEENLLLGAYARRRAKRKARLERVYEL------FP------------------ 120
Query: 117 NLQTDYILKILGLDICADTIVGDPMRRG-----VSGGQKKRLTTGELIVGPTRALFMDEI 171
LK RR +SGG+++ L ++ + L +DE
Sbjct: 121 ------RLK---------------ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP 159
Query: 172 SNGLDSSTTFQIVSFLKHLVHITDATALISLL---QPAPETFDLFDDVMLMAEGKIVYHG 228
S GL +I ++ L +++L Q A ++ D ++ G++V G
Sbjct: 160 SEGLAPKIVEEIFEAIREL-----RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEG 214
Query: 229 PRS 231
+
Sbjct: 215 TAA 217
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 8e-06
Identities = 33/175 (18%), Positives = 67/175 (38%), Gaps = 5/175 (2%)
Query: 1020 KKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPL-VATERTVLYRERFAGM-YSPWAYSF 1077
+ + +F I + ++ L + E+ +ER SP Y
Sbjct: 82 EITPLFNPNSGYAYYLLGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLL 141
Query: 1078 AQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTP 1137
++L ++ IQ +I +++ + G + L L + +G L+ SL
Sbjct: 142 GKILGDLLVGLIQLLIILLL---LFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFK 198
Query: 1138 NVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYG 1192
N + A ++ S +L+ F G +P + W + + P ++G+L YG
Sbjct: 199 NSEAAILVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYG 253
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 59/184 (32%), Positives = 83/184 (45%), Gaps = 33/184 (17%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI----IEGDIRIGG---YPK 730
Q L D+ +TA +G SG GK+T + L+ R I + G I + G Y
Sbjct: 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLN-RMNDTIDGCRVTGKITLDGEDIYDP 91
Query: 731 ---VQHTFARISGYCEQNDIHSPN---ITVEESVIFSAWLRLSPEID--LKTKAEF---V 779
V AR+ G Q PN ++ E+V + P I ++KAE V
Sbjct: 92 RLDVVELRARV-GMVFQK----PNPFPKSIYENVAYG------PRIHGLARSKAELDEIV 140
Query: 780 NEVLQTIEL-DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 838
L+ L + +K L PG +GLS Q++RL IA + +P +I MDEP S LD A
Sbjct: 141 ETSLRKAGLWEEVKDRL-HEPG-TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIA 198
Query: 839 AAIV 842
A V
Sbjct: 199 TAKV 202
|
Length = 267 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 9e-06
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 146 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQP 205
SGGQ++R+ ++ L +DE ++GLD ++ +++ L+ L T +I P
Sbjct: 82 SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL-AEEGRTVIIVTHDP 140
Query: 206 APETFDLFDDVMLMAEGK 223
D V+++ +GK
Sbjct: 141 -ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 9e-06
Identities = 61/250 (24%), Positives = 94/250 (37%), Gaps = 74/250 (29%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMT 63
L+G G GK+TL L+G L S SG + ++G LD +T
Sbjct: 322 LVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLD--------------------LT 358
Query: 64 VRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDV---------DAYMKAISVEGL 114
E R Q M +F DP D + + + G
Sbjct: 359 GGELRRLRRRIQ--------M-----------VFQDPYSSLNPRMTVGDILAEPLRIHGG 399
Query: 115 ----EKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG-ELIVGPTRALFMD 169
E+ + +L+++GL D +SGGQ++R+ L + P + L +D
Sbjct: 400 GSGAERRARVAELLELVGLP----PEFLDRYPHELSGGQRQRVAIARALALEP-KLLILD 454
Query: 170 EISNGLDSSTTFQIVSFLKHLVHITDATAL-IS-----LLQPAPETFDLFDDVMLMAEGK 223
E + LD S Q+++ LK L T L IS + A D V +M +G+
Sbjct: 455 EPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIA-------DRVAVMYDGR 507
Query: 224 IVYHGPRSYI 233
IV GP +
Sbjct: 508 IVEEGPTEKV 517
|
Length = 539 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 9e-06
Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 29/189 (15%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI--IEGDIRIGGYP-KVQ 732
K Q L DI +TAL+G SG GK+T + + R I I+G + I G K Q
Sbjct: 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFN-RMNDKIAKIDGLVEIEGKDVKNQ 72
Query: 733 HTFA--RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEID--LKTKAE---FVNEVLQT 785
A + G Q PN+ V+ I+ + +P++ +K K E V + LQ
Sbjct: 73 DVVALRKNVGMVFQQ----PNVFVKS--IYEN-ISYAPKLHGMIKNKDEEEALVVDCLQK 125
Query: 786 IEL-----DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
+ L D +K + + L G Q++RL IA L P ++ +DEPTS LD ++
Sbjct: 126 VGLFEEVKDKLKQNALALSG------GQQQRLCIARALAIKPKLLLLDEPTSALDPISSG 179
Query: 841 IVMRAVKNV 849
++ +K +
Sbjct: 180 VIEELLKEL 188
|
Length = 246 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 57/244 (23%), Positives = 98/244 (40%), Gaps = 56/244 (22%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS-AYISQYDLHI 59
+ LLG G GKTTLL ++G L SG + + G + Q+ + ++ Q+
Sbjct: 30 LVALLGPSGSGKTTLLRLIAG-LERP--DSGTILFGGEDATDVPVQERNVGFVFQHYALF 86
Query: 60 AEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQ 119
MTV + + F R + R++ E K V +K + ++ L
Sbjct: 87 RHMTVFDNVAFGLRVK---PRSERPPEAEIRAK---------VHELLKLVQLDWLADRYP 134
Query: 120 TDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE-LIVGPTRALFMDEISNGLDSS 178
+SGGQ++R+ L V P + L +DE LD+
Sbjct: 135 AQ-----------------------LSGGQRQRVALARALAVEP-KVLLLDEPFGALDAK 170
Query: 179 TTFQIVSFLKHL---VHITDATALISLLQPAPETFDLFDDVMLMAEGKI--------VYH 227
++ +L+ L +H+T T ++ Q E ++ D V++M +G+I VY
Sbjct: 171 VRKELRRWLRRLHDELHVT--TVFVTHDQ--EEALEVADRVVVMNKGRIEQVGTPDEVYD 226
Query: 228 GPRS 231
P S
Sbjct: 227 HPAS 230
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 55/245 (22%), Positives = 92/245 (37%), Gaps = 67/245 (27%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNG--------YRLDE----FVPQKTSAY 51
++G G GK+TLL L+G+L+ G +Y Y+L E + + +
Sbjct: 34 IVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSEAERRRLMRTEWGF 90
Query: 52 ISQYDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAY--MKAI 109
+ Q M V + R G R Y ++A
Sbjct: 91 VHQNPRDGLRMRVSAGANIGERLMAIGARH-----------------------YGNIRAT 127
Query: 110 SVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMD 169
+ + LE+ ++I I D + R SGG ++RL +V R +FMD
Sbjct: 128 AQDWLEE------------VEIDPTRI--DDLPRAFSGGMQQRLQIARNLVTRPRLVFMD 173
Query: 170 EISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFD------LFDDVMLMAEGK 223
E + GLD S +++ L+ LV +I T D L +++M +G+
Sbjct: 174 EPTGGLDVSVQARLLDLLRGLVRDLGLAVIIV-------THDLGVARLLAQRLLVMQQGR 226
Query: 224 IVYHG 228
+V G
Sbjct: 227 VVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 50/162 (30%)
Query: 13 TTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS----AYISQYDLHIAEMTVRETI 68
+TLL ++G L + SG + +G +K + Q E+TVRE +
Sbjct: 1 STLLKLITGLLQPT---SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 69 DFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILG 128
F R ++ + L+ +G
Sbjct: 58 FFGLR------DKEADARAEE---------------------------------ALERVG 78
Query: 129 LDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDE 170
L D +SGGQK+R+ ++ + L +DE
Sbjct: 79 LPDFLDREPV----GTLSGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 45/189 (23%), Positives = 87/189 (46%), Gaps = 10/189 (5%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP-----K 730
+ + D++ + R G + + G+ GAG+T L+ L G G EG++ I G P
Sbjct: 272 HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNP 330
Query: 731 VQHTFARISGYCEQNDIHS--PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL 788
Q A I+ E H P + V +++ S ++ + AE + + I+
Sbjct: 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAE-LQIIGSAIQR 389
Query: 789 DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKN 848
+K + LP + LS +++ +A L+ NP ++ +DEPT G+D A + + +
Sbjct: 390 LKVKTASPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQ 448
Query: 849 VVETGRTVV 857
+ + G ++
Sbjct: 449 LAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 57/225 (25%), Positives = 81/225 (36%), Gaps = 73/225 (32%)
Query: 643 MVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAG 702
+ P E + L+ +D+ Y A+K I F +TAL+G SG+G
Sbjct: 12 ITFPEEEIALSTKDLHVYYGKKEAIK-------------GIDMQFEKNKITALIGPSGSG 58
Query: 703 KTTLMDVLS--------GRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 754
K+T + L+ R TG I+ I DI+ I V
Sbjct: 59 KSTYLRSLNRMNDTIDIARVTGQILYRGI----------------------DINRKEINV 96
Query: 755 EE---------------------SVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL-DGIK 792
E ++ F+ L + D K E V L+ L D +K
Sbjct: 97 YEMRKHIGMVFQRPNPFAKSIYENITFA--LERAGVKDKKVLDEIVETSLKQAALWDQVK 154
Query: 793 YSLVGLPGVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
L S LS Q++RL IA + P I+ MDEP S LD
Sbjct: 155 DDL----HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALD 195
|
Length = 267 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 15/221 (6%)
Query: 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE-GDIRIGGYPKVQH 733
+L++++ + + G AL+G SG GK+TL +L G + G + + + Q
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQR 84
Query: 734 -TFARISGYCEQNDIHS--PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG 790
F R Q+ I + P TV E I LR +D + +E+L+ ++LD
Sbjct: 85 KAFRRDIQMVFQDSISAVNPRKTVRE--IIREPLRHLLSLDKAERLARASEMLRAVDLD- 141
Query: 791 IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNV- 849
L P LS Q +R+ +A L P ++ +DE S LD A V+R +K +
Sbjct: 142 -DSVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQ 198
Query: 850 VETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890
+ G + H + + E F +++ + G+I+ + P+G
Sbjct: 199 QQFGTACLFITH--DLRLVERFCQRVMVMDNGQIVETQPVG 237
|
Length = 268 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 53/248 (21%), Positives = 85/248 (34%), Gaps = 88/248 (35%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDE----------FVPQKTSAYIS 53
LLG G GKTT L L+G L +G + +G+ + + FV T Y
Sbjct: 36 LLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLY-- 90
Query: 54 QYDLHIAEMTVRETIDFSARCQG-TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVE 112
+T RE +++ A G G + +LE+LA ++ +
Sbjct: 91 ------DRLTARENLEYFAGLYGLKGDELTA-----RLEELADRL---GMEELLD----- 131
Query: 113 GLEKNLQTDYILKILGLDICADTIVGDPMRR--GVSGGQKKRLTTGELIVGPTRALFMDE 170
RR G S G ++++ +V L +DE
Sbjct: 132 -----------------------------RRVGGFSTGMRQKVAIARALVHDPPVLLLDE 162
Query: 171 ISNGLDSSTTFQIVSFLKHL----------VHITDATALISLLQPAPETFDLFDDVMLMA 220
+ GLD T + F++ L HI E L D V+++
Sbjct: 163 PTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ------------EVERLCDRVVVLH 210
Query: 221 EGKIVYHG 228
G++VY G
Sbjct: 211 RGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 2e-05
Identities = 49/229 (21%), Positives = 97/229 (42%), Gaps = 28/229 (12%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG-RKTGGIIEGDIRIGGYPKVQHT 734
+ + D++ R G + + GV+G G++ L++ +SG RK G I + G +
Sbjct: 270 GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP---ASGRILLNGKDVLGRL 326
Query: 735 FARIS-----GYCEQNDIH---SPNITVEESVIFSAWLRLSPE-----IDLKTKAEFVNE 781
R Y ++ ++++ E+++ P +D + +F E
Sbjct: 327 SPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG-RHDKKPFSRGGFLDRRAIRKFARE 385
Query: 782 VLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 841
+++ E D ++ P LS +++L +A EL P ++ +PT GLD A
Sbjct: 386 LIE--EFD-VRAPSPDAP-ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEF 441
Query: 842 VMRAVKNVVETGRTVVCTIHQPSIDIFEAFD--DLILMKNGGRIIYSGP 888
+ + + + G+ V+ S D+ E + D I + GRI+ P
Sbjct: 442 IHERLLELRDAGKAVLLI----SEDLDEILELSDRIAVIYEGRIVGIVP 486
|
Length = 501 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 56/235 (23%)
Query: 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRL-----DEFVP--QKTSAYISQ 54
T L G G GKT+L++ ++G L+ + G + NG L F+P ++ Y+ Q
Sbjct: 27 TALFGPSGSGKTSLINMIAG-LTRPDE--GRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83
Query: 55 YDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGL 114
TVR + + SM+
Sbjct: 84 DARLFPHYTVRGNLRYG--------MWKSMRA---------------------------- 107
Query: 115 EKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNG 174
Q D ++ +LG++ D P +SGG+K+R+ G ++ L MDE
Sbjct: 108 ----QFDQLVALLGIEHLLDRY---PGT--LSGGEKQRVAIGRALLTAPELLLMDEPLAS 158
Query: 175 LDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229
LD +I+ +L+ L + ++ + E L D V+++ GK+ GP
Sbjct: 159 LDLPRKREILPYLERLRDEIN-IPILYVSHSLDEVLRLADRVVVLENGKVKASGP 212
|
Length = 352 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 59/228 (25%), Positives = 90/228 (39%), Gaps = 47/228 (20%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHS---LKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
LLG G GKTTLL A+ G + + +KV+G G+R +VPQ+ + +D I
Sbjct: 11 LLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR---HEFAWDFPI- 66
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
+V T+ S R TGH G P V +
Sbjct: 67 --SVAHTV-MSGR---TGH--------------IGWLRRPCVADFAA------------V 94
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
L+ +GL AD VG+ +SGGQ++R+ + L +DE GLD T
Sbjct: 95 RDALRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ 149
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+ L TA++ + D V+L+ G+++ G
Sbjct: 150 ELLTELFIELA--GAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 53/237 (22%), Positives = 95/237 (40%), Gaps = 56/237 (23%)
Query: 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDE-----FVP--QKTSAYISQ 54
T + G G GKTTL+ ++G GE+ NG L + F+P ++ Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ 82
Query: 55 YDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGL 114
++VR + + + RA
Sbjct: 83 EARLFPHLSVRGNLRYGMK------RAR------------------------------PS 106
Query: 115 EKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNG 174
E+ + + ++++LG+ + G +SGG+K+R+ G ++ R L MDE
Sbjct: 107 ERRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAA 161
Query: 175 LDSSTTFQIVSFLKHLVHITDATAL-IS-LLQPAPETFDLFDDVMLMAEGKIVYHGP 229
LD ++I+ +L+ L L +S LQ E L D V+++ +G++ GP
Sbjct: 162 LDDPRKYEILPYLERLHAEFGIPILYVSHSLQ---EVLRLADRVVVLEDGRVAAAGP 215
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 41/228 (17%)
Query: 683 ITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGY--------PKVQ 732
++ + G + ++G SGAGKTTL +++G T G E ++R+G P +
Sbjct: 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG--EVNVRVGDEWVDMTKPGPDGR 360
Query: 733 HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPE-------IDLKTKAEFVNEVLQT 785
R G Q P+ TV +++ + L L E I LK F E +
Sbjct: 361 GRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKM-VGFDEEKAEE 419
Query: 786 IELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 845
I LD KY LS +R R+ +A L+ P I+ +DEPT +D I
Sbjct: 420 I-LD--KYP-------DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVD 465
Query: 846 VKNVV-----ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
V + + E +T + H + + D LM++ G+I+ G
Sbjct: 466 VTHSILKAREEMEQTFIIVSHDMDF-VLDVCDRAALMRD-GKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 27/180 (15%)
Query: 689 PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIH 748
G + G +GAGKTTL+ VL+G G I+I G + +R Y H
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLG----H 89
Query: 749 SPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEV--LQTIELDGIKYSLVGLPG-----V 801
P L ++ F+ + + ++ G ++VGL G V
Sbjct: 90 LPG--------------LKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLV 135
Query: 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIH 861
LS Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 136 RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 20/163 (12%)
Query: 692 LTALMGVSGAGKTTLMDVLS--GRKTGGI-IEGDIRIGGY----PKVQ-HTFARISGYCE 743
+TA++G SG GK+T + L+ G + +EG + G P++ + R G
Sbjct: 35 VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVF 94
Query: 744 QNDIHSPNITVEESVIFSAWLRLS---PEIDLKTKAEFVNEVLQTIEL-DGIKYSLVGLP 799
Q P +++ E+V + +R+S P+ DL E V L+ L +K L
Sbjct: 95 QRPNPFP-MSIYENVAYG--VRISAKLPQADLD---EIVESALKGAALWQEVKDKLN--K 146
Query: 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 842
GLS Q++RL IA L P ++ MDEP S LD A V
Sbjct: 147 SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 33/189 (17%)
Query: 692 LTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIH--- 748
+TA++G SG GK+T + L+ +E ++R+ G +V+ F + Y + +++
Sbjct: 35 VTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEG--RVE--FFNQNIYERRVNLNRLR 87
Query: 749 --------SPNI---TVEESVIFSAWL---RLSPEIDLKTKAEFVNEVLQTIEL-DGIKY 793
PN+ +V ++V + + R EID + V L+ +L D IK+
Sbjct: 88 RQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEID-----DIVESALKDADLWDEIKH 142
Query: 794 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNV-VET 852
+ LS Q++RL IA L P ++ MDEP GLD A+ V ++++ + +
Sbjct: 143 KI--HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRS 200
Query: 853 GRTVVCTIH 861
T+V H
Sbjct: 201 ELTMVIVSH 209
|
Length = 261 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%)
Query: 672 FNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGY 728
F ++ ++ + ++ T R G A++G +G+GK+TL +L+ G+IE G++ I +
Sbjct: 21 FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLA-----GMIEPTSGELLIDDH 75
Query: 729 PKVQHTFARISGYCE---QNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQT 785
P ++ S Q+ S N S I LRL+ +++ + + + + E L+
Sbjct: 76 PLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQ 135
Query: 786 IEL--DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
+ L D Y P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 136 VGLLPDHASY----YPHM--LAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 2e-05
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 26/154 (16%)
Query: 690 GILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG---YPKVQHTFA-----RISGY 741
GI TA+ G SGAGKT+L++ +SG +G I + G + + RI GY
Sbjct: 25 GI-TAIFGRSGAGKTSLINAISGLTRPQ--KGRIVLNGRVLFDAEKGICLPPEKRRI-GY 80
Query: 742 CEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801
Q+ P+ V + L + A+F + + L GI+ L P
Sbjct: 81 VFQDARLFPHYKVRGN--------LRYGMAKSMVAQF----DKIVALLGIEPLLDRYP-- 126
Query: 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 127 GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 24/210 (11%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV--QHTFA 736
+L ++ +PG + A++G SGAGKTTL+ ++ G + G E G +V A
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457
Query: 737 RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLV 796
I G E P E +++ + DL E +N G+ +++
Sbjct: 458 LIPGEYE------PEFG-EVTILEHLRSKTG---DLNAAVEILNRA-------GLSDAVL 500
Query: 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV-ETGRT 855
S LST Q++R +A L P+++ +DE + LD A V R + + E G T
Sbjct: 501 YRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGIT 560
Query: 856 VVCTIHQPSIDIFEAF--DDLILMKNGGRI 883
++ H+P ++ A D LIL+ G
Sbjct: 561 LIVVTHRP--EVGNALRPDTLILVGYGKVP 588
|
Length = 593 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 52/250 (20%), Positives = 89/250 (35%), Gaps = 79/250 (31%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAE-- 61
+LG G GK+TLL + G L GE+ +G + + +S+ +L+
Sbjct: 39 ILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQ---------LSEEELYEIRKR 86
Query: 62 -------------MTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKA 108
+TV E + F R + T ++E+ MK
Sbjct: 87 MGVLFQQGALFSSLTVFENVAFPLR-EHTKLPESLIREL----------------VLMK- 128
Query: 109 ISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRA--- 165
L+++GL D +SGG +KR V RA
Sbjct: 129 ---------------LELVGLR----GAAADLYPSELSGGMRKR-------VALARAIAL 162
Query: 166 ----LFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAE 221
LF+DE ++GLD + I ++ L T ++ + + D V ++A+
Sbjct: 163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIM-VTHDLDSLLTIADRVAVLAD 221
Query: 222 GKIVYHGPRS 231
GK++ G
Sbjct: 222 GKVIAEGTPE 231
|
Length = 263 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 3e-05
Identities = 54/237 (22%), Positives = 97/237 (40%), Gaps = 59/237 (24%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGY---RLDEFVPQKTSAYISQYDLHIA 60
++G G GK+TLL L G G V +G ++D ++ Y+ Q D +
Sbjct: 496 IIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPADLRRNIGYVPQ-DPRLF 551
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
T+R+ I A P D + ++A + G+ T
Sbjct: 552 YGTLRDNIALGA-------------------------PYADDEEILRAAELAGV-----T 581
Query: 121 DYI-LKILGLDICADTIVGDPMR-RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSS 178
+++ GLD +G+ R R +SGGQ++ + ++ L +DE ++ +D+
Sbjct: 582 EFVRRHPDGLD----MQIGE--RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNR 635
Query: 179 TTFQIVSFLKHLVHITDATALI-----SLLQPAPETFDLFDDVMLMAEGKIVYHGPR 230
+ + LK + T ++ SLL DL D +++M G+IV GP+
Sbjct: 636 SEERFKDRLKRWLA--GKTLVLVTHRTSLL-------DLVDRIIVMDNGRIVADGPK 683
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 41/173 (23%), Positives = 56/173 (32%), Gaps = 48/173 (27%)
Query: 6 GHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDE--FVPQKTSAYISQYDLHIAEMT 63
G G GKTTLL L+G L SGEV +NG L E P + Y+ E++
Sbjct: 33 GPNGIGKTTLLRILAG-LLRPD--SGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89
Query: 64 VRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYI 123
E + F A G R + L
Sbjct: 90 ALENLHFWAAIHGGAQRTIE----------------------------DALAA------- 114
Query: 124 LKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLD 176
+GL D +S GQ++RL L + +DE + LD
Sbjct: 115 ---VGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALD 159
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 3e-05
Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 36/188 (19%)
Query: 692 LTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPN 751
+TAL+G SG GK+T + L+ + ++EG I+I G V + E +I+S N
Sbjct: 35 ITALIGPSGCGKSTFLRTLN--RMNDLVEG-IKIEG--NVIY---------EGKNIYSNN 80
Query: 752 ITVEE-------------SVIFSAWLRLS--PEI----DLKTKAEFVNEVLQTIEL-DGI 791
+ E + S + +S P+I D K E V + L+ L + +
Sbjct: 81 FDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV 140
Query: 792 KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE 851
K L LS Q++RL IA L P++I MDEPTS LD + + + N+ E
Sbjct: 141 KDKLN--TNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE 198
Query: 852 TGRTVVCT 859
+ ++ T
Sbjct: 199 SYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 19/173 (10%)
Query: 672 FNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGY 728
F ++ ++ + ++ T R G A++G +G+GK+TL +L+G +IE G+I I +
Sbjct: 21 FRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAG-----MIEPTSGEILINDH 75
Query: 729 PKVQHTFARISGYCE---QNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQT 785
P ++ S Q+ S N + I LRL+ +++ + + + + E L+
Sbjct: 76 PLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRM 135
Query: 786 IEL--DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 836
+ L D Y L+ Q++R+ +A L+ P II DE + LD
Sbjct: 136 VGLLPDHANYY------PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 27/169 (15%)
Query: 685 GTFRPGILTALMGVSGAGKTTLMDVLSGR--KTGGIIEGDIRIGGYPKVQHTFARISGYC 742
G+ + ++G +G GKTT + +L+G G IE ++ Y K Q+ A G
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY-KPQYIKADYEG-- 76
Query: 743 EQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802
TV + L S D T F E+ + ++++ I V
Sbjct: 77 ----------TVRD-------LLSSITKDFYTHPYFKTEIAKPLQIEQILDREV-----P 114
Query: 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE 851
LS + +R+ IA L + I +DEP++ LD + + ++ E
Sbjct: 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAE 163
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 58/251 (23%), Positives = 99/251 (39%), Gaps = 65/251 (25%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP------QKTSAYISQ 54
M ++G G GK+TLL +L+G + + SGE+ +NG ++ + ++ I Q
Sbjct: 32 MVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQ 88
Query: 55 YDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAI-SVEG 113
+ ++V E + G+ + L G+F D + A+ V
Sbjct: 89 QFNLVPRLSVLENVLLGRL----GYTS-------TWRSLFGLFSKEDKAQALDALERVGI 137
Query: 114 LEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRAL------- 166
L+K Q A T+ SGGQ++R V RAL
Sbjct: 138 LDKAYQR------------ASTL---------SGGQQQR-------VAIARALVQQPKII 169
Query: 167 FMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDL----FDDVMLMAEG 222
DE LD + +++ LK + T +++L Q DL D ++ + G
Sbjct: 170 LADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-----VDLAKKYADRIIGLKAG 224
Query: 223 KIVYHGPRSYI 233
+IV+ GP S +
Sbjct: 225 RIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 4e-05
Identities = 54/241 (22%), Positives = 86/241 (35%), Gaps = 63/241 (26%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS----AYISQYD 56
+ LLG G GKTTLL + G + SG + ++G + P + + AY+ +
Sbjct: 31 IVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGR 87
Query: 57 LHIAEMTVRETIDFSA-RCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLE 115
+TV E + A + + ++EV +L FP
Sbjct: 88 RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYEL------FP----------------- 124
Query: 116 KNLQTDYILKILGLDICADTIVGDPMRR---GV-SGGQKKRLTTGE-LIVGPTRALFMDE 170
LK R G SGG+++ L L+ P + L +DE
Sbjct: 125 -------RLK--------------ERRNQRAGTLSGGEQQMLAIARALMSRP-KLLLLDE 162
Query: 171 ISNGLDSSTTFQIVSFLKHLVHITDATALISLL--QPAPETFDLFDDVMLMAEGKIVYHG 228
S GL +I +K L + LL Q A ++ D ++ G+IV G
Sbjct: 163 PSEGLAPKIVEEIFEAIKELR---KEGGMTILLVEQNARFALEIADRGYVLENGRIVLSG 219
Query: 229 P 229
Sbjct: 220 T 220
|
Length = 237 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 52/237 (21%), Positives = 87/237 (36%), Gaps = 53/237 (22%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS----AYISQYD 56
+T +LG G GKTTLL L G L SG + +G + + P + + AY+ Q
Sbjct: 28 VTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGR 84
Query: 57 LHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEK 116
+TV E + R ++ +++ +FP L++
Sbjct: 85 EIFPRLTVEENLLTGLAALPRRSR-----KIP--DEIYELFP--------------VLKE 123
Query: 117 NLQTDYILKILGLDICADTIVGDPMRRG--VSGGQKKRLTTGELIVGPTRALFMDEISNG 174
L RRG +SGGQ+++L +V + L +DE + G
Sbjct: 124 MLG----------------------RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEG 161
Query: 175 LDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231
+ S I ++ L L+ Q +L D +M G++V G
Sbjct: 162 IQPSIIKDIGRVIRRLRAEGGMAILLV-EQYLDFARELADRYYVMERGRVVASGAGD 217
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 13/150 (8%)
Query: 688 RPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR--ISGYCEQN 745
G A++G SGAGK+TL+++++G T G + + G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 746 DIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805
++ ++TV +++ L L+P LK A ++ GI+ L LPG LS
Sbjct: 81 NLF-SHLTVAQNI----GLGLNP--GLKLNAAQREKLHAIARQMGIEDLLARLPG--QLS 131
Query: 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
QR+R+ +A LV I+ +DEP S LD
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIH 861
GLS Q++RL IA L +P +I MDEP S LD A + + ++ + E TVV H
Sbjct: 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTH 257
|
Length = 305 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 5e-05
Identities = 60/252 (23%), Positives = 97/252 (38%), Gaps = 80/252 (31%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ---KTSAYISQYDL 57
+ +LG G GK+TLL ALSG+LS SGEV NG L ++ P + A + Q+
Sbjct: 30 VVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQH-- 84
Query: 58 HIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLA-GIFPDPD---VDAYMKAISVEG 113
++ + F+ EV+ + + G+ D V A + + +
Sbjct: 85 ----SSL--SFPFTVE------------EVVAMGRAPHGLSRAEDDALVAAALAQVDLAH 126
Query: 114 LEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKR------LTTGELIVGPTRALF 167
L DY +SGG+++R L GP R L
Sbjct: 127 LA---GRDY--------------------PQLSGGEQQRVQLARVLAQLWEPDGPPRWLL 163
Query: 168 MDE-ISNGLDSS---TTFQIVSFLKHLVHITDATALISLLQPAPETFDL------FDDVM 217
+DE S LD + ++ + L H A+I +L DL D ++
Sbjct: 164 LDEPTSA-LDLAHQHHVLRL---ARQLAH-ERGLAVIVVLH------DLNLAARYADRIV 212
Query: 218 LMAEGKIVYHGP 229
L+ +G++V G
Sbjct: 213 LLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 57/157 (36%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
+ ++G G GK++LLSAL G+L K+SG VS G + AY+SQ I
Sbjct: 33 LVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG----------SIAYVSQEPW-IQ 78
Query: 61 EMTVRETIDFSARCQGTGHRADSM--KEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNL 118
T+RE I F G D ++VIK L +PD++ L
Sbjct: 79 NGTIRENILF-------GKPFDEERYEKVIKACAL-----EPDLEI---------LPDGD 117
Query: 119 QTDYILKILGLDICADTIVGDPMRRGV--SGGQKKRL 153
T +G+ +G+ SGGQK+R+
Sbjct: 118 L---------------TEIGE---KGINLSGGQKQRI 136
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 6e-05
Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 40/203 (19%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGGYPKVQHTF 735
LLS++ RPG + G SGAGKT+L+ L+G +G I
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRIS---------------- 451
Query: 736 ARISGYCEQNDI-------HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL 788
+ + + P T+ E++ + P + VL + L
Sbjct: 452 -----MPADSALLFLPQRPYLPQGTLREALCY-------PNAAPDFSDAELVAVLHKVGL 499
Query: 789 DGIKYSLVGL-PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVK 847
+ L LS +++RL A L+ P +F+DE TS LD + + +K
Sbjct: 500 GDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLK 559
Query: 848 NVVETGRTVVCTIHQPSIDIFEA 870
+ TV+ H+P++ F +
Sbjct: 560 EEL-PDATVISVGHRPTLWNFHS 581
|
Length = 604 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 7e-05
Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 43/177 (24%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP--QKTSAYISQYDLHIAE 61
L+G GCGK+TLLS + G L+ +GE+ N RLD +P Q+ + Q L
Sbjct: 33 LMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-LPAAQRQIGILFQDALLFPH 91
Query: 62 MTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTD 121
++V + + F+ +++G + +
Sbjct: 92 LSVGQNLLFAL-----------------------------------PATLKGNARRNAAN 116
Query: 122 YILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSS 178
L+ GLD DP +SGGQ+ R+ ++ +AL +DE + LD +
Sbjct: 117 AALERSGLDGAFHQ---DPAT--LSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 7e-05
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQP 863
LS Q++RL IA + P+++ MDEP S LD A ++ ++ ++ T++ H
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE-LKKNFTIIVVTH-- 206
Query: 864 SIDIFEAFDDLILMKNGGRIIYSG 887
S+ + D + GRI+
Sbjct: 207 SMKQAKKVSDRVAFFQSGRIVEYN 230
|
Length = 251 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 8e-05
Identities = 63/242 (26%), Positives = 102/242 (42%), Gaps = 74/242 (30%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMT 63
LLG GCGK+TLL L+ GE+ NG + ++ +E
Sbjct: 371 LLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADY----------------SEAA 411
Query: 64 VRETIDF-SARCQGTGHR-ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVE-GLEKNLQT 120
+R+ I S R H + ++++ + L P+ D + + + GLEK L+
Sbjct: 412 LRQAISVVSQRV----HLFSATLRDNLLLAA-----PNAS-DEALIEVLQQVGLEKLLED 461
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALF-------MDEISN 173
D GL+ +G+ R+ +SGG+++RL G RAL +DE +
Sbjct: 462 D-----KGLN----AWLGEGGRQ-LSGGEQRRL-------GIARALLHDAPLLLLDEPTE 504
Query: 174 GLDSSTTFQIVSFL------KHLVHITD-ATALISLLQPAPETFDLFDDVMLMAEGKIVY 226
GLD+ T QI+ L K ++ IT T L + FD + +M G+I+
Sbjct: 505 GLDAETERQILELLAEHAQNKTVLMITHRLTGL-----------EQFDRICVMDNGQIIE 553
Query: 227 HG 228
G
Sbjct: 554 QG 555
|
Length = 574 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 8e-05
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQP 863
LS +++RL A L+ P +F+DE TS LD + + + +K E G TV+ H+P
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGITVISVGHRP 148
Query: 864 SIDIFEAFDDLILMKNGGRI 883
S+ F D ++ + G
Sbjct: 149 SLWKF--HDRVLDLDGEGGW 166
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 42/196 (21%), Positives = 67/196 (34%), Gaps = 48/196 (24%)
Query: 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDE-----FVPQKTSAYISQY- 55
LLG G GK+TLL L+G L SG V +G LD ++ + Q
Sbjct: 21 LALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDP 77
Query: 56 DLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLE 115
D + V + + F G ++ V + A+ GL
Sbjct: 78 DDQLFAADVDQDVAFGPL--NLGLSEAEVERR--------------VREALTAVGASGLR 121
Query: 116 KNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGL 175
+ +SGG+KKR+ + L +DE + GL
Sbjct: 122 ERPT-----------------------HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGL 158
Query: 176 DSSTTFQIVSFLKHLV 191
D + Q+++ L+ L
Sbjct: 159 DPAGREQMLAILRRLR 174
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 9e-05
Identities = 55/231 (23%), Positives = 89/231 (38%), Gaps = 53/231 (22%)
Query: 3 LLLGHPGCGKTTLLSALSGKL----SHSLKVSGEVSYNGYRLDEFVPQKTSAYISQ-YDL 57
+L G G GKTTLL+ L G L SLKV G+ Y + ++ YI Q ++L
Sbjct: 35 ILTGPSGSGKTTLLT-LIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNL 93
Query: 58 H---IAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGL 114
A V+ ++ R + A ++A+ GL
Sbjct: 94 LGFLTARQNVQMALELQPNLSYQEARERA-------------------RAMLEAV---GL 131
Query: 115 EKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNG 174
+L DY P +SGGQK+R+ +V + + DE +
Sbjct: 132 GDHL--DYY----------------P--HNLSGGQKQRVAIARALVHRPKLVLADEPTAA 171
Query: 175 LDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIV 225
LDS + +V ++ L T LI + D+ D ++ M +GK++
Sbjct: 172 LDSKSGRDVVELMQKLAREQGCTILI--VTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 9e-05
Identities = 54/218 (24%), Positives = 90/218 (41%), Gaps = 37/218 (16%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLS-------------GRKTGGIIEGDIRIG 726
+ D + G + +MG+SG+GK+T++ +L+ G I + ++R
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 727 GYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTI 786
K+ F Q+ P++TV ++ F L + + KA L +
Sbjct: 104 RRKKIAMVF--------QSFALMPHMTVLDNTAFGMELAGINAEERREKA------LDAL 149
Query: 787 ELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM-RA 845
G++ P LS R+R+ +A L NP I+ MDE S LD +
Sbjct: 150 RQVGLENYAHSYP--DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDEL 207
Query: 846 VKNVVETGRTVVCTIHQPSIDIFEAF---DDLILMKNG 880
VK + RT+V H D+ EA D + +M+NG
Sbjct: 208 VKLQAKHQRTIVFISH----DLDEAMRIGDRIAIMQNG 241
|
Length = 400 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 56/231 (24%), Positives = 90/231 (38%), Gaps = 45/231 (19%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNG---YRLDEFVPQKTSAYISQYDL 57
++G G GK+TL+ L + SGE+ +G + +K +SQ D
Sbjct: 357 KVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQ-DP 412
Query: 58 HIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKN 117
+ T+RE I G + +E+ + KLA
Sbjct: 413 LLFSGTIRENIAL-------GRPDATDEEIEEALKLANAHEF------------------ 447
Query: 118 LQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDS 177
I L DTIVG+ +SGGQ++RL ++ L +DE ++ LD+
Sbjct: 448 --------IANLPDGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498
Query: 178 STTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
T I LK L+ T LI + + T D ++++ G+IV G
Sbjct: 499 ETEALIQDALKKLLK--GRTTLIIAHRLS--TIKNADRIIVLDNGRIVERG 545
|
Length = 567 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 19/181 (10%)
Query: 688 RPG-ILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP-KVQHTFARIS---GYC 742
R G IL + G+ GAG+T L L G + G+I + G P +++ I Y
Sbjct: 283 RAGEIL-GIAGLVGAGRTELARALFGAR--PASSGEILLDGKPVRIRSPRDAIKAGIAYV 339
Query: 743 EQNDIHS----PNITVEESVIFSAWLRLSPE--IDLKTKAEFVNEVLQTIELDGIKYSLV 796
D S ++++ E++ ++ R S ID + + ++ + IK
Sbjct: 340 P-EDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLR---IKTPSP 395
Query: 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTV 856
P + LS ++++ +A L +P ++ +DEPT G+D A A + R ++ + G+ +
Sbjct: 396 EQP-IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAI 454
Query: 857 V 857
+
Sbjct: 455 L 455
|
Length = 500 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 48/225 (21%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS-AYISQ-YDLHIAE 61
LLG GCGKTT L ++G + SG + G + + P+ A + Q Y L+
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALY-PH 86
Query: 62 MTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTD 121
MTV + I F +KL K P ++D V + + LQ +
Sbjct: 87 MTVYDNIAFG----------------LKLRK----VPKDEIDE-----RVREVAELLQIE 121
Query: 122 YILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDE-ISNGLDSSTT 180
++L D + +SGGQ++R+ G IV + MDE +SN LD+
Sbjct: 122 HLL--------------DRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN-LDAKLR 166
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIV 225
Q+ + LK L T I + E + D + +M +G+I
Sbjct: 167 VQMRAELKRLQQRLGTTT-IYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 49/229 (21%), Positives = 94/229 (41%), Gaps = 30/229 (13%)
Query: 670 RGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG-- 727
R + + + DI+ + G + G+ G+G+T LM+ L G G+IR+ G
Sbjct: 269 RNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFG--VDKRAGGEIRLNGKD 326
Query: 728 ------YPKVQHTFARISGYCEQNDIHSPNITVEESVIFS----------AWLRLSPEID 771
V+ A I+ N PN ++ +++ S A +
Sbjct: 327 ISPRSPLDAVKKGMAYITESRRDNGFF-PNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE 385
Query: 772 LKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 831
+T AE E+L +K V ++ LS ++++ I+ L P +I DEPT
Sbjct: 386 QRT-AENQRELLA------LKCHSVN-QNITELSGGNQQKVLISKWLCCCPEVIIFDEPT 437
Query: 832 SGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880
G+D A A + + ++ + + G+ ++ + +I D + + G
Sbjct: 438 RGIDVGAKAEIYKVMRQLADDGKVIL-MVSSELPEIITVCDRIAVFCEG 485
|
Length = 510 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 58/263 (22%), Positives = 104/263 (39%), Gaps = 50/263 (19%)
Query: 4 LLGHPGCGKTTLLS---ALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
L+G G GK+T+L L ++V GE Y+ +P + + + H+
Sbjct: 31 LIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYH-------MPGRNGPLVPADEKHLR 83
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFP-----DPDVDAYMKAISVEGLE 115
+M R I V + L FP D +A + + + E
Sbjct: 84 QM--RNKIGM----------------VFQSFNL---FPHKTVLDNVTEAPVLVLGMARAE 122
Query: 116 KNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGL 175
+ +L ++GL AD D M +SGGQ++R+ + + + DE+++ L
Sbjct: 123 AEKRAMELLDMVGL---ADKA--DHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSAL 177
Query: 176 DSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235
D ++++ ++ L D T L+ + + D V +G+IV G I
Sbjct: 178 DPELVGEVLNVIRRLASEHDLTMLL-VTHEMGFAREFADRVCFFDKGRIVEQGKPDEI-- 234
Query: 236 FFEDCGFRCPERKGVADFLQEVI 258
FR P+ + +FL +VI
Sbjct: 235 ------FRQPKEERTREFLSKVI 251
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 1e-04
Identities = 49/211 (23%), Positives = 94/211 (44%), Gaps = 11/211 (5%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 737
L+ ++ + G +++G +G+GK+T ++ G + G ++ D + V + +
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 738 ISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVG 797
I + D TVE+ V F + P ++ + V+E L + + K
Sbjct: 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR---VDEALLAVNMLDFKTR--- 136
Query: 798 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVV 857
+ LS Q++R+ +A + P II +DE TS LD +MR + + E + V
Sbjct: 137 --EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTV 194
Query: 858 CTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
+I +D + D +++MK G I + P
Sbjct: 195 LSITH-DLDEAASSDRILVMKAGEIIKEAAP 224
|
Length = 277 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 38/188 (20%), Positives = 78/188 (41%), Gaps = 20/188 (10%)
Query: 688 RPGILTALMGVSGAGKTTLMDVLSGR------KTGGIIEGDIRIGGY--PKVQHTFARIS 739
R G + L+G +G GK+T + +L+G+ K + D + + ++Q+ F ++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL- 82
Query: 740 GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAE--FVNEVLQTIELDGIKYSLVG 797
+ + + ++ LK K E ++E++ +EL +
Sbjct: 83 ----LEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR--- 135
Query: 798 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVV 857
+ LS + +R+ IA L + F DEP+S LD + R ++ + E V+
Sbjct: 136 --NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVL 193
Query: 858 CTIHQPSI 865
H ++
Sbjct: 194 VVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 52/238 (21%), Positives = 87/238 (36%), Gaps = 55/238 (23%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS---AYISQYDL 57
+T LLG G GK+TLL L+G L +G V G L + + A + Q
Sbjct: 29 LTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSD 85
Query: 58 HIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKN 117
+TVR+ + HR+ L D +A++ L
Sbjct: 86 TAVPLTVRDVVALGR----IPHRS-----------LWAGDSPHDAAVVDRALARTELSHL 130
Query: 118 LQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDS 177
D T+ SGG+++R+ + + L +DE +N LD
Sbjct: 131 ADRDM-----------STL---------SGGERQRVHVARALAQEPKLLLLDEPTNHLDV 170
Query: 178 STTFQIVSFLKHLVHITDATALISLLQPAPETFDL------FDDVMLMAEGKIVYHGP 229
+ ++ ++ L T T + +L DL D V+++ G++V GP
Sbjct: 171 RAQLETLALVRELAA-TGVTVVAAL-------HDLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKL-----SHSLKVSGEVSYNG 37
+T LLG G GK+TLL AL+G L +V+G+V+ NG
Sbjct: 29 VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70
|
Length = 272 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 57/222 (25%), Positives = 90/222 (40%), Gaps = 58/222 (26%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTF 735
K ++L DI+ +F PG ++G++GAGK+TL+ +++G G+ R KV
Sbjct: 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAPGIKV---- 70
Query: 736 ARISGYCEQNDIHSPNITVEESVI--------------------------FSAWL----R 765
GY Q P TV E+V A L
Sbjct: 71 ----GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAE 126
Query: 766 LSPEID------LKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELV 819
L ID L K E + L+ D V+ LS +R+R+ + L+
Sbjct: 127 LQEIIDAADAWDLDRKLEIAMDALRCPPWDAD---------VTKLSGGERRRVALCRLLL 177
Query: 820 ANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIH 861
+ P ++ +DEPT+ LDA + A + + ++ G TVV H
Sbjct: 178 SKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ---KTSAYISQ 54
+ L+G G GK+TLL A++G L + SGE+ +G + + + + Y+ Q
Sbjct: 27 IVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 43/207 (20%), Positives = 76/207 (36%), Gaps = 49/207 (23%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAY------ISQ 54
L+G G GK+TLL + + L SG + NG + + + + Q
Sbjct: 29 FVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQ 85
Query: 55 YDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGL 114
+ + V E + F+ G R + K V P
Sbjct: 86 DFRLLPDRNVYENVAFALEVTGVPPR-EIRKRV------------PAA------------ 120
Query: 115 EKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNG 174
L+++GL + P +SGG+++R+ IV L DE +
Sbjct: 121 ---------LELVGLSHKHRAL---PA--ELSGGEQQRVAIARAIVNSPTILIADEPTGN 166
Query: 175 LDSSTTFQIVSFLKHLVHITDATALIS 201
LD TT++I++ LK ++ T +++
Sbjct: 167 LDPDTTWEIMNLLKK-INKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 58/253 (22%), Positives = 101/253 (39%), Gaps = 54/253 (21%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS-AYISQ-YDLHIAE 61
+LG G GK+ LL ++G + SG++ NG + P+K +Y+ Q Y L
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYAL-FPH 85
Query: 62 MTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTD 121
MTV + I + +K V+ E +
Sbjct: 86 MTVYKNIAYG----------------------------------LKKRKVDKKEIERKVL 111
Query: 122 YILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTF 181
I ++LG+D + P +SGG+++R+ +V + L +DE + LD T
Sbjct: 112 EIAEMLGIDHLLNR---KPET--LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKE 166
Query: 182 QIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDCG 241
++ LK + T + + E + L D V +M GK++ G +
Sbjct: 167 KLREELKKIRKEFGVTV-LHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV-------- 217
Query: 242 FRCPERKGVADFL 254
F+ P+ + VA+FL
Sbjct: 218 FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-04
Identities = 55/248 (22%), Positives = 87/248 (35%), Gaps = 55/248 (22%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS--AYISQYDLHIAE 61
LLG GCGKTTLL L+G SG + +G + P Y L
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYAL-FPH 56
Query: 62 MTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTD 121
MTV E + F + + + IK P V ++ + +E
Sbjct: 57 MTVEENVAFGLKMRKVP------RAEIK----------PRVLEALRLVQLEEFADR---- 96
Query: 122 YILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTF 181
K L SGGQ++R+ +V + L +DE + LD
Sbjct: 97 ---KPHQL----------------SGGQQQRVALARALVFKPKILLLDEPLSALDKKLRD 137
Query: 182 QIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIV--------YHGPRS-Y 232
Q+ LK + T + + E + D + +M +GKI Y P + +
Sbjct: 138 QMQLELKTIQEQLGIT-FVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196
Query: 233 ICKFFEDC 240
+ +F +
Sbjct: 197 VARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 14/189 (7%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK---TGGIIEGDIRIGGYPKVQHT 734
Q L +T RPG + L G SGAGK+TL+ ++ G + G I I +
Sbjct: 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75
Query: 735 FARIS-GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL-DGIK 792
F R G Q+ + TV ++V + + D++ + V+ L + L D K
Sbjct: 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR---VSAALDKVGLLDKAK 132
Query: 793 YSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET 852
+ L G +++R+ IA +V P+++ DEPT LD + ++R +
Sbjct: 133 NFPIQLSG------GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV 186
Query: 853 GRTVVCTIH 861
G TV+ H
Sbjct: 187 GVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 56/238 (23%), Positives = 89/238 (37%), Gaps = 66/238 (27%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMT 63
+G G GKTT L LSG L + SGEV G VP K + + +
Sbjct: 52 FIGPNGAGKTTTLKILSGLLQPT---SGEVRVAG-----LVPWK------RRKKFLRRIG 97
Query: 64 V----RETI--DFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKN 117
V + + D DS LA I+ D+ ++ L +
Sbjct: 98 VVFGQKTQLWWDLPVI--------DS------FYLLAAIY---DLPPARFKKRLDELSEL 140
Query: 118 LQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT-TGELIVGPTRALFMDEISNGLD 176
L + +L P+R+ +S GQ+ R L+ P LF+DE + GLD
Sbjct: 141 LDLEELLDT-------------PVRQ-LSLGQRMRAEIAAALLHEP-EILFLDEPTIGLD 185
Query: 177 SSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFD------DVMLMAEGKIVYHG 228
I +FLK T L++ + + D V+++ +G+++Y G
Sbjct: 186 VVAQENIRNFLKEYNRERGTTVLLT-------SHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 54/241 (22%), Positives = 95/241 (39%), Gaps = 58/241 (24%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNG-----YRLDEFVPQKTSAYISQY 55
L+G G GK+TL++ + SG++ +G Y L Q A +SQ
Sbjct: 360 TVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQ--VALVSQ- 413
Query: 56 DLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLE 115
D+ + T+ I + Q E+ LA AY + V+ L
Sbjct: 414 DVVLFNDTIANNIAYGRTEQA------DRAEI--ERALA--------AAYAQDF-VDKLP 456
Query: 116 KNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGL 175
L DT +G+ +SGGQ++RL ++ L +DE ++ L
Sbjct: 457 LGL---------------DTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSAL 500
Query: 176 DSSTTFQIVSFLKHLVHITDATALI-----SLLQPAPETFDLFDDVMLMAEGKIVYHGPR 230
D+ + + + L+ L+ T L+ S ++ A D +++M +G+IV G
Sbjct: 501 DNESERLVQAALERLMQ--GRTTLVIAHRLSTIEKA-------DRIVVMDDGRIVERGTH 551
Query: 231 S 231
+
Sbjct: 552 N 552
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 50/239 (20%), Positives = 93/239 (38%), Gaps = 56/239 (23%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKV-SGEVSYNGYRLDEFVPQKTSA---YIS-QYDLH 58
++G G GK+TL ++G S +V SG + + G L E P + + +++ QY
Sbjct: 31 IMGPNGSGKSTLSKTIAGH--PSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEE 88
Query: 59 IAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKA--ISVEGLEK 116
I ++ E + R R+ +E + L + A + + E L +
Sbjct: 89 IPGVSNLEFL----RSALNARRSARGEEPLDLLDFLKLL-----KAKLALLGMDEEFLNR 139
Query: 117 NLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLD 176
++ G SGG+KKR ++ + + +DEI +GLD
Sbjct: 140 SVNE-----------------------GFSGGEKKRNEILQMALLEPKLAILDEIDSGLD 176
Query: 177 SSTTFQIVSFLKHL-------VHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+ + L + IT L++ ++P D V ++ +G+IV G
Sbjct: 177 IDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP--------DYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 17/161 (10%)
Query: 688 RPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE-GDIRIGGYPKVQHTFARISGYCE- 743
R + +L+G +GAGKTT+ + L+G + TGG I I G P H AR+ G
Sbjct: 29 REQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPG--HQIARM-GVVRT 85
Query: 744 -QNDIHSPNITVEESVIFSAWLRLSPEID---LKTKAEFVNEVLQTIELDGIKYSLVGLP 799
Q+ +TV E+++ + +L + LKT A F + ++ VGL
Sbjct: 86 FQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPA-FRRAESEALDRAATWLERVGLL 144
Query: 800 GVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
+ L+ Q++RL IA +V P I+ +DEP +GL+
Sbjct: 145 EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 42/152 (27%), Positives = 52/152 (34%), Gaps = 61/152 (40%)
Query: 694 ALMGVSGAGKTTLMDVLSGRKTGGIIE---GDIRIGGYPKVQHTFARISGYCEQNDIHSP 750
L+G SG GK+TL GR G+ E G+I G
Sbjct: 43 GLVGESGCGKSTL-----GRLILGLEEPTSGEILFEGKD--------------------- 76
Query: 751 NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG------VSGL 804
I +K E VL+ +E VGLP L
Sbjct: 77 -------------------ITKLSKEERRERVLELLEK-------VGLPEEFLYRYPHEL 110
Query: 805 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA 836
S QR+R+ IA L NP +I DEP S LD
Sbjct: 111 SGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 4e-04
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 792 KY-SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNV 849
KY +LVG S LS Q++R++IA ++ NP I+ +DE TS LD ++ +V + + N+
Sbjct: 568 KYETLVG-SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNL 625
|
Length = 1466 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 29/213 (13%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 737
+L +++ + G ++G +GAGK+TL +L+ + EG I I G
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLEAEEGKIEIDG--------ID 71
Query: 738 ISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVG 797
IS ++ S I ++ +FS +R + + + E + L+ E
Sbjct: 72 ISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSE---------- 121
Query: 798 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVV 857
G LS QR+ L +A L+ P ++ +DE T+ +D A++ + ++ T T++
Sbjct: 122 --GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTIL 178
Query: 858 CTIH--QPSIDIFEAFDDLILMKNGGRIIYSGP 888
H + ID +D +++M G Y P
Sbjct: 179 TIAHRLRTIID----YDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF--VPQKTSAYISQYDLH 58
+ G G GKTTLL L+G L +GEV + G + + Y+
Sbjct: 30 ALQITGPNGAGKTTLLRILAG-LLRPD--AGEVYWQGEPIQNVRESYHQALLYLGHQPGI 86
Query: 59 IAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGI 96
E+T E + F R G A ++ E + LAG+
Sbjct: 87 KTELTALENLHFWQRFHG-SGNAATIWEALAQVGLAGL 123
|
Length = 209 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 42/193 (21%), Positives = 82/193 (42%), Gaps = 17/193 (8%)
Query: 672 FNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG--YP 729
F+ LL I+ G L L G +GAGKTTL+ +++G +G+I
Sbjct: 9 FDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIK 66
Query: 730 KVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD 789
K T+ + + +P +T+ E+ ++ +I A + E+ + L+
Sbjct: 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLE 118
Query: 790 GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNV 849
+ GL LS+ Q++++ + ++ + +DEP LD + ++ ++
Sbjct: 119 HLIDYPCGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEH 173
Query: 850 VETGRTVVCTIHQ 862
G V+ T HQ
Sbjct: 174 RAKGGAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 5e-04
Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 42/220 (19%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARI 738
LL D++ + G LT ++G +G+GK+TL+ L + I EG + + + A +
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVW------AERSIAYV 726
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
+Q I N TV +++F E A + + ++ +L+ L L
Sbjct: 727 P---QQAWIM--NATVRGNILF-----FDEE-----DAARLADAVRVSQLEA---DLAQL 768
Query: 799 PGVSGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVK 847
G GL TE Q+ R+++A + AN + +D+P S LDA V+
Sbjct: 769 GG--GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF 826
Query: 848 NVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
G+T V HQ + D ++ GR+ +SG
Sbjct: 827 LGALAGKTRVLATHQVHV---VPRADYVVALGDGRVEFSG 863
|
Length = 1560 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 6e-04
Identities = 54/238 (22%), Positives = 94/238 (39%), Gaps = 58/238 (24%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDE------FVPQKTSAYISQ 54
+T L+G GCGK+TL LSG L G V + G LD + Q+ +
Sbjct: 29 VTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQD 85
Query: 55 YDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGL 114
+ I + I FS R G E+ + VD + + +
Sbjct: 86 PEQQIFYTDIDSDIAFSLRNLGVPE-----AEITR-----------RVDEALTLVDAQHF 129
Query: 115 EKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNG 174
P++ +S GQKKR+ +V R L +DE + G
Sbjct: 130 RHQ----------------------PIQ-CLSHGQKKRVAIAGALVLQARYLLLDEPTAG 166
Query: 175 LDSSTTFQIVSFLKHLV----HITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
LD + Q+++ ++ +V H+ ++ I L+ +++ D V ++ +G+I+ HG
Sbjct: 167 LDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 55/263 (20%), Positives = 103/263 (39%), Gaps = 59/263 (22%)
Query: 2 TLLLGHPGCGKTTLLSALS--GKLSHSLKVSGEVSYNG-----YRLDEFVPQKTSAYISQ 54
T L+G GCGK+TLL +L+ L +++ G+V ++G ++D ++ + Q
Sbjct: 30 TALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQ 89
Query: 55 YDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGL 114
+ M++ + I + R G + + + V + K A ++ D + L
Sbjct: 90 -KPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALW-----DEVKDRLHDSAL 143
Query: 115 EKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNG 174
G+SGGQ++RL + L +DE ++
Sbjct: 144 -----------------------------GLSGGQQQRLCIARALAVEPEVLLLDEPTSA 174
Query: 175 LDSSTTFQIVSFLKHLVHITDATALI---SLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231
LD T +I ++ L T +I ++ Q A + D +G++V +GP
Sbjct: 175 LDPIATGKIEELIQELK--KKYTIVIVTHNMQQAARIS----DRTAFFYDGELVEYGPTE 228
Query: 232 YICKFFEDCGFRCPERKGVADFL 254
I F P+ K D++
Sbjct: 229 QI--------FTNPKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 6e-04
Identities = 54/233 (23%), Positives = 93/233 (39%), Gaps = 40/233 (17%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
+T L+G G GKTT L L+ R+++ K S Y D+ +
Sbjct: 49 VTSLMGPTGSGKTTFLRTLN------------------RMND----KVSGYRYSGDVLLG 86
Query: 61 EMTV---RETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKN 117
++ R+ ++F R R + I LAG+ + G+ +
Sbjct: 87 GRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGV----RAHKLVPRKEFRGVAQA 142
Query: 118 LQTDYILKILGL-DICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLD 176
T+ +GL D D + P R +SGGQ++ L + L +DE ++ LD
Sbjct: 143 RLTE-----VGLWDAVKDRLSDSPFR--LSGGQQQLLCLARTLAVNPEVLLLDEPTSALD 195
Query: 177 SSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229
+TT +I F++ L D +I + + + D L +G++V GP
Sbjct: 196 PTTTEKIEEFIRSL---ADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGP 245
|
Length = 276 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 6e-04
Identities = 58/210 (27%), Positives = 84/210 (40%), Gaps = 50/210 (23%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI----IEGDIRIGGYPKVQH 733
Q L +++ +TAL+G SG GK+T + L+ R I IEG + I
Sbjct: 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLN-RMNDLIKNCRIEGKVSI-------- 76
Query: 734 TFARISGYCEQNDIHSPNITVEE-----SVIFSAW----------LRLSPEIDLKTKAEF 778
E DI+ P++ V E ++F + P I K +
Sbjct: 77 ---------EGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDL 127
Query: 779 ---VNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
V L++ L + P +S LS Q++RL IA L P II DEPTS LD
Sbjct: 128 DGVVENALRSAALWDETSDRLKSPALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALD 186
Query: 836 ----ARAAAIVMRAVKNVVETGRTVVCTIH 861
AR ++M K+ T+V H
Sbjct: 187 PISTARIEDLIMNLKKDY-----TIVIVTH 211
|
Length = 258 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 6e-04
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 737
LL DI+ T PG L+G +GAGK+TL+ +++G EG + G K+ + F +
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGSTVKIGY-FEQ 70
Query: 738 ISG 740
+SG
Sbjct: 71 LSG 73
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 6e-04
Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 34/205 (16%)
Query: 665 SAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLM---DVLSGRKTGGIIEG 721
S + K F Q L +I +TAL+G SG GK+T + + + G EG
Sbjct: 17 SEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEG 76
Query: 722 DIRIGGYPKVQHTFA----------RISGYCEQNDIHSPN---ITVEESVIFSAWLRLSP 768
+I + +P + + RIS ++ PN ++ E+V + +R
Sbjct: 77 EIIL--HPDNVNILSPEVDPIEVRMRISMVFQK-----PNPFPKSIFENVAYGLRIR--- 126
Query: 769 EIDLKTKA---EFVNEVLQTIEL-DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 824
+K ++ E V L+ L D +K L L LS Q++RL IA L +P I
Sbjct: 127 --GVKRRSILEERVENALRNAALWDEVKDRLGDL--AFNLSGGQQQRLCIARALATDPEI 182
Query: 825 IFMDEPTSGLDARAAAIVMRAVKNV 849
+ DEPTS LD A A + + ++
Sbjct: 183 LLFDEPTSALDPIATASIEELISDL 207
|
Length = 265 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 7e-04
Identities = 64/238 (26%), Positives = 93/238 (39%), Gaps = 58/238 (24%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKL---SHSLKVSGE-VSYNGYRLDEFVPQKTSAYISQYD 56
M LLG G GK+TL +G L S + + GE + Y+ L E V + D
Sbjct: 30 MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE-VRKTVGIVFQNPD 88
Query: 57 LHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEK 116
+ TV E + F G S +EV K K A +KA+ +EG E
Sbjct: 89 DQLFAPTVEEDVAFGPLNLGL-----SKEEVEKRVKEA-----------LKAVGMEGFEN 132
Query: 117 NLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLD 176
P +SGGQKKR+ ++ + +DE ++GLD
Sbjct: 133 K---------------------PPHH--LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
Query: 177 SSTTFQIVSFLKHLVHITDATALISLLQPAPETFDL------FDDVMLMAEGKIVYHG 228
QI+ L L + T +IS T D+ D V +M++GKI+ G
Sbjct: 170 PMGASQIMKLLYDL-NKEGITIIIS-------THDVDLVPVYADKVYVMSDGKIIKEG 219
|
Length = 275 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 59/237 (24%), Positives = 98/237 (41%), Gaps = 53/237 (22%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMT 63
L+GH GCGK+TLL+ +SG + SG V G ++ E P + + Y L + +T
Sbjct: 16 LIGHSGCGKSTLLNLISG---LAQPTSGGVILEGKQITEPGPDRMVVF-QNYSL-LPWLT 70
Query: 64 VRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYI 123
VRE I LA VD + +S E+ +
Sbjct: 71 VRENI-----------------------ALA-------VDRVLPDLSKS--ERRAIVEEH 98
Query: 124 LKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQI 183
+ ++GL AD G +SGG K+R+ + + L +DE LD+ T +
Sbjct: 99 IALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNL 153
Query: 184 VSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVY--HGPRSYICKFFE 238
L + T L+ T D+ D+ +L+++ ++V +GP + I + E
Sbjct: 154 QEELMQIWEEHRVTVLMV-------THDV-DEALLLSD-RVVMLTNGPAANIGQILE 201
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 7e-04
Identities = 53/231 (22%), Positives = 97/231 (41%), Gaps = 47/231 (20%)
Query: 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQY--DLHI 59
T ++G G GK+TL L G SGE+ NG+ L + +I+ + +I
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYI 559
Query: 60 AEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQ 119
++ E + A+ S E+ ++A I D +E + Q
Sbjct: 560 FSGSILENLLLGAK------ENVSQDEIWAACEIAEIKDD-----------IENMPLGYQ 602
Query: 120 TDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSST 179
T+ L +I SGGQK+R+ ++ ++ L +DE ++ LD+ T
Sbjct: 603 TE-------LSEEGSSI---------SGGQKQRIALARALLTDSKVLILDESTSNLDTIT 646
Query: 180 TFQIVSFLKHLVHITDATALI--SLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+IV +L+++ D T + L A ++ D ++++ GKI+ G
Sbjct: 647 EKKIV---NNLLNLQDKTIIFVAHRLSVAKQS----DKIIVLDHGKIIEQG 690
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 7e-04
Identities = 45/202 (22%), Positives = 66/202 (32%), Gaps = 65/202 (32%)
Query: 689 PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIH 748
PG + ++G G+GKTTL AR G
Sbjct: 1 PGEVILIVGPPGSGKTTLA-------------------------RALARELGP------- 28
Query: 749 SPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808
VI+ ID + E V + L I + G K S G E
Sbjct: 29 -----PGGGVIY---------IDGEDILEEVLDQLLLIIVGGKKASGSG---------EL 65
Query: 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV------KNVVETGRTVVCTIHQ 862
R RL +A+ P ++ +DE TS LDA A+++ E TV+ T +
Sbjct: 66 RLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125
Query: 863 PSI----DIFEAFDDLILMKNG 880
+ FD I++
Sbjct: 126 EKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 7e-04
Identities = 60/240 (25%), Positives = 97/240 (40%), Gaps = 64/240 (26%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
M LLG GCGKTT+L ++G + G++ +G E V T I Q D+ +
Sbjct: 34 MVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDG----EDV---THRSIQQRDICMV 83
Query: 61 --------EMTVRETIDFSARCQGTG--HRADSMKEVIKLEKLAGIFPDPDVDAYMKAIS 110
M++ E + + + G R +KE ++L LAG F D VD
Sbjct: 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG-FEDRYVDQ------ 136
Query: 111 VEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE-LIVGPTRALFMD 169
+SGGQ++R+ LI+ P LF +
Sbjct: 137 ----------------------------------ISGGQQQRVALARALILKPKVLLFDE 162
Query: 170 EISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229
+SN LD++ + ++ L + T+L + E F + D V++M +GKI+ G
Sbjct: 163 PLSN-LDANLRRSMREKIRELQQQFNITSLY-VTHDQSEAFAVSDTVIVMNKGKIMQIGS 220
|
Length = 351 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 8e-04
Identities = 59/250 (23%), Positives = 87/250 (34%), Gaps = 80/250 (32%)
Query: 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ------KTSAYISQ- 54
++G G GK+TLL + G L SGEV +G + + + Q
Sbjct: 29 LAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQS 85
Query: 55 ---YDLHIAEMTVRETIDFSARCQGTGHRADSMKEV--IKLEKLAGIFPDPDVDAYMKAI 109
+D +TV E + F R H S +E+ I LEKL A+
Sbjct: 86 GALFD----SLTVFENVAFPLR----EHTRLSEEEIREIVLEKLE-------------AV 124
Query: 110 SVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRAL--- 166
+ G E D +SGG KKR V RAL
Sbjct: 125 GLRGAE-----------------------DLYPAELSGGMKKR-------VALARALALD 154
Query: 167 ----FMDEISNGLDSSTTFQIVSFLKHLVHITDATALI---SLLQPAPETFDLFDDVMLM 219
DE + GLD + I ++ L T+++ L F + D + ++
Sbjct: 155 PELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL----DTAFAIADRIAVL 210
Query: 220 AEGKIVYHGP 229
+GKIV G
Sbjct: 211 YDGKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 8e-04
Identities = 65/284 (22%), Positives = 105/284 (36%), Gaps = 85/284 (29%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQK--TSAYISQYDL--HI 59
LLG GCGKTT+L ++G + SG + +G + + + Y L H
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPH- 100
Query: 60 AEMTVRETIDFSARCQGTGHR------ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEG 113
MTV E + F R Q T ++++ V +LE+ A P
Sbjct: 101 --MTVFENVAFGLRMQKTPAAEITPRVMEALRMV-QLEEFAQRKP--------------- 142
Query: 114 LEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISN 173
L SGGQ++R+ +V + L +DE +
Sbjct: 143 --HQL---------------------------SGGQQQRVAIARAVVNKPKVLLLDESLS 173
Query: 174 GLDSSTTFQIVSFLKHL---VHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG-P 229
LD Q+ + LK L + IT + + E + D +++M +G+I G P
Sbjct: 174 ALDYKLRKQMQNELKALQRKLGIT----FVFVTHDQEEALTMSDRIVVMRDGRIEQDGTP 229
Query: 230 RSYICKFFEDCGFRCPERKGVADFLQE-------VISRKDQEQY 266
R + P+ VA F+ E VI R D+++
Sbjct: 230 R---------EIYEEPKNLFVARFIGEINIFDATVIERLDEQRV 264
|
Length = 375 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 8e-04
Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 30/207 (14%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR-----KTGGIIEGDIRIGGYPKVQHT 734
LSDI G L A++G +G GKT+L+ + G + +I G + P+V
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAY--VPQVSWI 690
Query: 735 FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL-DGIKY 793
F N TV E+++F + E + +A V + ++L G
Sbjct: 691 F---------------NATVRENILFGS----DFESERYWRAIDVTALQHDLDLLPGRDL 731
Query: 794 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETG 853
+ +G GV+ +S Q++R+++A + +N I D+P S LDA A V + G
Sbjct: 732 TEIGERGVN-ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKG 790
Query: 854 RTVVCTIHQPSIDIFEAFDDLILMKNG 880
+T V +Q + D +IL+ G
Sbjct: 791 KTRVLVTNQ--LHFLPLMDRIILVSEG 815
|
Length = 1495 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 40/232 (17%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTL-MDVL--SGRKTGGIIEG-----DIRIGGYPKV 731
L ++ L + GVSG+GK++L D + G++ +E +G K
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRR--YVESLSAYARQFLGQMDKP 68
Query: 732 QHTFARISGYC-----EQNDI-HSPNITVEESVIFSAWLR-LSPEIDLKTKAEFVNEV-L 783
I G +Q +P TV +LR L + ++ + F+ +V L
Sbjct: 69 DVD--SIEGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGL 126
Query: 784 QTIELDGIKYSLVGLPGVSGLSTEQRKRLT--IAVELVANPSIIF-MDEPTSGLDARAAA 840
+ L +L G G + QR RL I L +++ +DEP+ GL R
Sbjct: 127 GYLTLSRSAPTLSG--GEA-----QRIRLATQIGSGLT---GVLYVLDEPSIGLHPRDND 176
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILM-----KNGGRIIYSG 887
++ +K + + G TV+ H D A D +I + +GG I+ G
Sbjct: 177 RLIETLKRLRDLGNTVLVVEHDE--DTIRAADHVIDIGPGAGVHGGEIVAQG 226
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.001
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 146 SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISL--L 203
SGG+++R+ + L +DE ++ LD + +++ L+ L T ++ L L
Sbjct: 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL 158
Query: 204 QPAPETFDLFDDVMLMAEGKIVYHG 228
A D V+L+ +G+IV G
Sbjct: 159 NLA---ARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 50/232 (21%), Positives = 80/232 (34%), Gaps = 62/232 (26%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGY----------RLDEFVPQKTSAYIS 53
LG G GKTT + L+ L + SG GY R VPQ S
Sbjct: 24 FLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDE- 79
Query: 54 QYDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEG 113
++T RE ++ R G + + E+
Sbjct: 80 -------DLTGRENLEMMGRLYG-------LPKDEAEERAE------------------- 106
Query: 114 LEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISN 173
+L++ L AD VG SGG ++RL ++ LF+DE +
Sbjct: 107 --------ELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153
Query: 174 GLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIV 225
GLD T I +++ L + ++ E L D + ++ G+I+
Sbjct: 154 GLDPRTRRAIWDYIRALK--EEGVTILLTTHYMEEADKLCDRIAIIDHGRII 203
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 42/215 (19%)
Query: 690 GILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDI-- 747
G + L+G SG GKTT++ +++G + EG I I G V H +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG-EDVTHR------SIQQRDICM 82
Query: 748 --HS----PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI--KYSLVGLP 799
S P++++ E+V + + P+ + K + V E L+ ++L G +Y
Sbjct: 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQR---VKEALELVDLAGFEDRY------ 133
Query: 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRAVKNVVETGRTV 856
V +S Q++R+ +A L+ P ++ DEP S LDA R+ +R ++ + T
Sbjct: 134 -VDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ--QFNITS 190
Query: 857 VCTIHQPSIDIFEAF---DDLILMKNGGRIIYSGP 888
+ H S EAF D +I+M N G+I+ G
Sbjct: 191 LYVTHDQS----EAFAVSDTVIVM-NKGKIMQIGS 220
|
Length = 351 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 17/188 (9%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKT-GGIIEGDIRIGGYPKVQ 732
K+Q L +++ G + L+G +GAGKTTL+ L G R T G I+ I + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 733 HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIK 792
++ E + S +TVEE++ + + + + ++V E+ + I+
Sbjct: 77 IMREAVAIVPEGRRVFS-RMTVEENLAMGGF--FAERDQFQERIKWVYELFPRLHERRIQ 133
Query: 793 YSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET 852
+ +S +++ L I L++ P ++ +DEP+ GL A I+++ + + +E
Sbjct: 134 RA-------GTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIEQ 182
Query: 853 GRTVVCTI 860
R TI
Sbjct: 183 LREQGMTI 190
|
Length = 237 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 32/193 (16%)
Query: 662 DTPSAMKKRGFN--QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS-------- 711
PS ++ R N K L +I +TA +G SG GK+TL+ +
Sbjct: 9 TAPSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPE 68
Query: 712 GRKTGGII-EGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWL--RLS- 767
R G I+ +G+ + + A++ G Q P +++ +++ F L +LS
Sbjct: 69 QRAEGEILLDGENILTPKQDIALLRAKV-GMVFQKPTPFP-MSIYDNIAFGVRLFEKLSR 126
Query: 768 PEIDLK-----TKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANP 822
E+D + TKA NEV + G LS Q++RL IA + P
Sbjct: 127 AEMDERVEWALTKAALWNEVKDKLHQSG-----------YSLSGGQQQRLCIARGIAIRP 175
Query: 823 SIIFMDEPTSGLD 835
++ +DEP S LD
Sbjct: 176 EVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.002
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS---AYISQ 54
+ +LG G GK+TLL L+G L S SGE+ +G L P++ + AY+ Q
Sbjct: 27 IVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 53/232 (22%), Positives = 90/232 (38%), Gaps = 34/232 (14%)
Query: 4 LLGHPGCGKTTLLSALS--GKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAE 61
L+G GCGKTT L A++ L+ +V+G + +G + Y +
Sbjct: 35 LIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDI--------------YGPRVDP 80
Query: 62 MTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTD 121
+ +R + + V+ KLAGI D D M+ E++L+
Sbjct: 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGI---RDRDHLMEVA-----ERSLRGA 132
Query: 122 YILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTF 181
+ D D + G+SGGQ++RL + L MDE ++ LD ++T
Sbjct: 133 ALW-----DEVKDRL--KTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTA 185
Query: 182 QIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233
+I + L +T + + A + D G +V HGP +
Sbjct: 186 RIEDLMTDLKKVTTIIIVTHNMHQAAR---VSDTTSFFLVGDLVEHGPTDQL 234
|
Length = 252 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 61/263 (23%), Positives = 101/263 (38%), Gaps = 48/263 (18%)
Query: 2 TLLLGHPGCGKTTLLSALSGKLS---HSLKVSGEVSYNGYRLDEFVP-QKTSAYISQY-D 56
T L+GH G GK+TLL L+G L + V V + + E P +K + Q+ +
Sbjct: 35 TALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPE 94
Query: 57 LHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEK 116
+ E TV + + F + G E I EKL M ++ E EK
Sbjct: 95 SQLFEETVLKDVAFGPQNFGI---PKEKAEKIAAEKLE-----------MVGLADEFWEK 140
Query: 117 NLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLD 176
+ P +SGGQ +R+ ++ L +DE + GLD
Sbjct: 141 S----------------------PFE--LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
Query: 177 SSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK- 235
+++ + + L++ L + D D V L+ +G I+ G S + +
Sbjct: 177 PKARIEMMQLFESIHQSGQTVVLVTHLM--DDVADYADYVYLLEKGHIISCGTPSDVFQE 234
Query: 236 --FFEDCGFRCPERKGVADFLQE 256
F + P+ AD LQ+
Sbjct: 235 VDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 42/192 (21%), Positives = 80/192 (41%), Gaps = 31/192 (16%)
Query: 1 MTLLLGHPGCGKTTLLSALS--GKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLH 58
+T ++G GCGK+T+L +++ L S +V+G++ + + YD
Sbjct: 32 VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI--------------YDRG 77
Query: 59 IAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNL 118
+ +++R + + VI KL G + D E +E +L
Sbjct: 78 VDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEAD--------EIVESSL 129
Query: 119 QTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSS 178
+ ++ D D + + M +SGGQ++RL I + MDE ++ LD
Sbjct: 130 K-----RVALWDEVKDRLKSNAME--LSGGQQQRLCIARTIAVKPEVILMDEPASALDPI 182
Query: 179 TTFQIVSFLKHL 190
+T +I ++ L
Sbjct: 183 STLKIEELIEEL 194
|
Length = 252 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 0.002
Identities = 62/241 (25%), Positives = 101/241 (41%), Gaps = 72/241 (29%)
Query: 4 LLGHPGCGKTTLLSALSGKLSH--SLKVSGEVSYNGYRLDEFVPQ---KTSAYISQYDLH 58
L+G G GKT+LL+AL G L + SLK+ NG L E P+ K +++ Q +
Sbjct: 381 LVGPSGAGKTSLLNALLGFLPYQGSLKI------NGIELRELDPESWRKHLSWVGQ-NPQ 433
Query: 59 IAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNL 118
+ T+R+ + L G +PD S E L++ L
Sbjct: 434 LPHGTLRDNV------------------------LLG---NPD-------ASDEQLQQAL 459
Query: 119 QTDYILKIL-----GLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISN 173
+ ++ + L GLD T +GD G+S GQ +RL ++ P + L +DE +
Sbjct: 460 ENAWVSEFLPLLPQGLD----TPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDEPTA 514
Query: 174 GLDSSTTFQIVSFLKHLVHITDATALI------SLLQPAPETFDLFDDVMLMAEGKIVYH 227
LD+ + ++ L T L+ L Q +D + +M +G+IV
Sbjct: 515 SLDAHSEQLVMQALNAASR--RQTTLMVTHQLEDLAQ--------WDQIWVMQDGQIVQQ 564
Query: 228 G 228
G
Sbjct: 565 G 565
|
Length = 588 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 42/197 (21%)
Query: 1 MTLLLGHPGCGKTTLLSALS--GKLSHSLKVSGEVSYNGYRL-----DEFVPQKTSAYIS 53
+T L+G GCGK+T L L+ L ++K+ GEV +G + D +K +
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 54 QYDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEG 113
Q M++ + + + R G + + K V K A ++ + D A+
Sbjct: 92 QKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSAL---- 146
Query: 114 LEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISN 173
+SGGQ++RL I + MDE ++
Sbjct: 147 ------------------------------KLSGGQQQRLCIARTIAVKPDVILMDEPTS 176
Query: 174 GLDSSTTFQIVSFLKHL 190
LD +T +I + L
Sbjct: 177 ALDPISTLKIEDLMVEL 193
|
Length = 251 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 62/251 (24%), Positives = 103/251 (41%), Gaps = 73/251 (29%)
Query: 598 KSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDV 657
KS+ +A +Y +L Q + K++ A + GP+ G V+ E L+ F D
Sbjct: 285 KSKARLA--RYEELLSQ-------EFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGD- 334
Query: 658 QYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG 717
KL L+ D++ PG + ++G +GAGK+TL +++G++
Sbjct: 335 ------------------KL-LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD 375
Query: 718 IIEGDIRIGGYPKVQHTFARISGYCEQN-DIHSPNITVEESVIFSAWLRLSPEIDLKTKA 776
G I+IG K+ Y +Q+ D PN TV W
Sbjct: 376 --SGTIKIGETVKL--------AYVDQSRDALDPNKTV--------W------------- 404
Query: 777 EFVNEVLQTIELDGIK-----Y-SLVGLPG------VSGLSTEQRKRLTIAVELVANPSI 824
E ++ L I+L + Y G V LS +R R+ +A L + ++
Sbjct: 405 EEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNV 464
Query: 825 IFMDEPTSGLD 835
+ +DEPT+ LD
Sbjct: 465 LLLDEPTNDLD 475
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.002
Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 65/232 (28%)
Query: 4 LLGHPGCGKTTLLSALSGKLSH----SLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHI 59
++G G GKT+L+SA+ G+LSH S+ + G V+Y VPQ + I
Sbjct: 648 IVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAY--------VPQVS---------WI 690
Query: 60 AEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQ 119
TVRE I F + D + + Y +AI V L+ +L
Sbjct: 691 FNATVRENILFGS--------------------------DFESERYWRAIDVTALQHDLD 724
Query: 120 TDYILKILGLDICADTIVGDPMRRGV--SGGQKKRLTTGELIVGPTRALFMDEISNGLDS 177
+ G D+ T +G+ RGV SGGQK+R++ + + D+ + LD+
Sbjct: 725 L-----LPGRDL---TEIGE---RGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDA 773
Query: 178 STTFQIV-SFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
Q+ S +K + + + L P L D ++L++EG I G
Sbjct: 774 HVAHQVFDSCMKDELKGKTRVLVTNQLHFLP----LMDRIILVSEGMIKEEG 821
|
Length = 1495 |
| >gnl|CDD|130314 TIGR01247, drrB, daunorubicin resistance ABC transporter membrane protein | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 431 LSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASLFRTVAVSLMI 490
+++++ + +L++ V P +L F V + L AIA+ ++ +I
Sbjct: 103 VAMIQGAIILALSFIVAILKPSG--VIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQII 160
Query: 491 GTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTY 526
+M +L + G P +MP+W++ + PLTY
Sbjct: 161 MSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTY 196
|
This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 236 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCT--IH 861
LS Q++RL IA + P +I MDEP S LD + + + + E ++ T +
Sbjct: 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQ 211
Query: 862 QPS-IDIFEAFDDLILMKNGGRIIY 885
Q + + AF ++ L + GGR Y
Sbjct: 212 QAARVSDMTAFFNVELTEGGGRYGY 236
|
Length = 264 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.002
Identities = 65/256 (25%), Positives = 112/256 (43%), Gaps = 72/256 (28%)
Query: 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG--IIEG-DI------ 723
+ + L++++ G + ++G SGAGK+TL+ ++ R T G +++G D+
Sbjct: 16 RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEK 75
Query: 724 -------RIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSP-EIDLKTK 775
+IG QH F +S TV ++V P E+ K
Sbjct: 76 ELRKARRQIGMI--FQH-FNLLSSR-----------TVFDNVAL-------PLELAGTPK 114
Query: 776 AEF---VNEVLQTIELDGIKYSLVGL-------PGVSGLSTEQRKRLTIAVELVANPSII 825
AE V E+L+ LVGL P + LS Q++R+ IA L +NP ++
Sbjct: 115 AEIKARVTELLE----------LVGLSDKADRYP--AQLSGGQKQRVAIARALASNPKVL 162
Query: 826 FMDEPTSGLDARAAAIVMRAVKNV-VETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884
DE TS LD ++ +K++ E G T+V H+ +D+ + D + + + GR++
Sbjct: 163 LCDEATSALDPATTRSILELLKDINRELGLTIVLITHE--MDVVKRICDRVAVIDAGRLV 220
Query: 885 YSGPLGQHSCKVIDYF 900
G V + F
Sbjct: 221 EQGT-------VSEVF 229
|
Length = 343 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 50/247 (20%), Positives = 92/247 (37%), Gaps = 68/247 (27%)
Query: 2 TLLLGHPGCGKTTLLSALSGKLSHSLKV--SGEVSYNGYRLDEFVPQKTSAYI------S 53
LLG G GK+TL S L+ L V G++S G+ L P+ A +
Sbjct: 30 VALLGPNGAGKSTLFSLLTR-----LYVAQEGQISVAGHDLRR-APRAALARLGVVFQQP 83
Query: 54 QYDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEG 113
DL +++VR+ + + A G
Sbjct: 84 TLDL---DLSVRQNLRYHAALHGLSRA--------------------------------- 107
Query: 114 LEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISN 173
E + +L LGL AD V R ++GG ++R+ ++ L +DE +
Sbjct: 108 -EARARIAELLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPALLLLDEPTV 161
Query: 174 GLDSSTTFQIVSFLKHLVH-----ITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
GLD ++ I + ++ L + AT L+ ++ D ++++ G+++ G
Sbjct: 162 GLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVLHRGRVLADG 214
Query: 229 PRSYICK 235
+ +
Sbjct: 215 AAAELRG 221
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 59/247 (23%), Positives = 90/247 (36%), Gaps = 62/247 (25%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
+L+G G GKTT L ++ + + SGE+ +G IS D
Sbjct: 29 FLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGED------------ISDLDPV-- 71
Query: 61 EMTVRETIDFSARCQGTG---HR--ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLE 115
+R I + Q G H A+++ V KL + K
Sbjct: 72 --ELRRKIGYVI--QQIGLFPHLTVAENIATVPKLLG------------WDKE------R 109
Query: 116 KNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRAL-------FM 168
+ D +L ++GLD + D +SGGQ++R VG RAL M
Sbjct: 110 IKKRADELLDLVGLD---PSEYADRYPHELSGGQQQR-------VGVARALAADPPILLM 159
Query: 169 DEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
DE LD T Q+ +K L T ++ + E L D + +M G+IV +
Sbjct: 160 DEPFGALDPITRKQLQEEIKELQKELGKT-IVFVTHDIDEALKLADRIAVMDAGEIVQYD 218
Query: 229 PRSYICK 235
I
Sbjct: 219 TPDEILA 225
|
Length = 309 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 61/237 (25%), Positives = 98/237 (41%), Gaps = 58/237 (24%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ---KTSAYISQYDLHIA 60
++G G GK+TL + G SG V +G L ++ + K Y+ Q D+ +
Sbjct: 349 IIGPSGSGKSTLARLIVGIW---PPTSGSVRLDGADLKQWDRETFGKHIGYLPQ-DVELF 404
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
TV E I AR G AD K +I+ KLAG V L
Sbjct: 405 PGTVAENI---AR---FGENADPEK-IIEAAKLAG---------------VHEL------ 436
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
IL L DT++G P +SGGQ++R+ + G + + +DE ++ LD
Sbjct: 437 -----ILRLPDGYDTVIG-PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGE 490
Query: 181 FQIVSFLKHL-------VHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPR 230
+ + +K L V IT +L+ + D ++++ +G+I G R
Sbjct: 491 QALANAIKALKARGITVVVITHRPSLLGCV----------DKILVLQDGRIARFGER 537
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 63/237 (26%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKV--SGEVSYNGYRLDEFVP---QKTSAYISQYDLH 58
++G G GK+TL KL V +G V +G+ L P ++ + Q ++
Sbjct: 33 IVGRSGSGKSTL-----TKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENV- 86
Query: 59 IAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNL 118
+ ++R+ I SM+ VI+ KLAG
Sbjct: 87 LFNRSIRDNI-------ALADPGMSMERVIEAAKLAG----------------------- 116
Query: 119 QTDYILKILGLDICADTIVGDPMRRGV--SGGQKKRLTTGELIVGPTRALFMDEISNGLD 176
D+I + L DTIVG+ +G SGGQ++R+ ++ R L DE ++ LD
Sbjct: 117 AHDFISE---LPEGYDTIVGE---QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALD 170
Query: 177 SSTTFQIVSFLKHLVHITDATALI-----SLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+ I+ + + T +I S ++ A D +++M +G+IV G
Sbjct: 171 YESEHAIMRNMHDI--CAGRTVIIIAHRLSTVKNA-------DRIIVMEKGRIVEQG 218
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 48/238 (20%), Positives = 89/238 (37%), Gaps = 62/238 (26%)
Query: 5 LGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQY-----DLHI 59
+G G GK+TLL+A++G L SG++ +G + + K + +++
Sbjct: 38 IGSNGAGKSTLLNAIAGDL---KPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94
Query: 60 AEMTVRETIDFSA-RCQGTG-------HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISV 111
E+T+ E + + R + G R S +E +
Sbjct: 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLA-------------------RLG 135
Query: 112 EGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEI 171
GLE L +GL +SGGQ++ L+ + P + L +DE
Sbjct: 136 LGLENRLSDR-----IGL---------------LSGGQRQALSLLMATLHPPKILLLDEH 175
Query: 172 SNGLDSSTTFQIVSFLKHLVHITDATALI---SLLQPAPETFDLFDDVMLMAEGKIVY 226
+ LD T ++ +V T L+ ++ D + ++++ GKIV
Sbjct: 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMED----ALDYGNRLIMLHSGKIVL 229
|
Length = 263 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.003
Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 50/185 (27%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS-------AYIS 53
+T+++G GCGK++LL A+ G++ + G+V ++ E + T AY +
Sbjct: 29 LTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAA 85
Query: 54 QYDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEG 113
Q + TV E I F G+ K V L PD+D
Sbjct: 86 QKPW-LLNATVEENITF-----GSPFNKQRYKAVTDACSL-----QPDIDL--------- 125
Query: 114 LEKNLQTDYILKILGLDICADTIVGDPMRRGV--SGGQKKRLTTGELIVGPTRALFMDEI 171
L T +G+ RG+ SGGQ++R+ + T +F+D+
Sbjct: 126 ---------------LPFGDQTEIGE---RGINLSGGQRQRICVARALYQNTNIVFLDDP 167
Query: 172 SNGLD 176
+ LD
Sbjct: 168 FSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 31/171 (18%)
Query: 685 GTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQ 744
G G + ++G +G GKTT + +L+G +I+ D G + ++S Y Q
Sbjct: 362 GEIYDGEVIGILGPNGIGKTTFVKLLAG-----VIKPDE--GSEEDL-----KVS-YKPQ 408
Query: 745 NDIHSPNITVEE---SVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801
+ TVE+ S I SA+ + F E+++ + L+ + V
Sbjct: 409 YISPDYDGTVEDLLRSAIRSAF----------GSSYFKTEIVKPLNLEDLLERPV----- 453
Query: 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET 852
LS + +R+ IA L + +DEP++ LD IV + ++ +E
Sbjct: 454 DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIEN 504
|
Length = 591 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.003
Identities = 49/224 (21%), Positives = 103/224 (45%), Gaps = 20/224 (8%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRI-GGYPKV 731
+ + L++ + TF+ +T ++G +G+GK+T++ + +G +TG I GD I K+
Sbjct: 23 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKI 82
Query: 732 QHT--FARISGYCEQ-NDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL 788
+ + G Q + T+E+ + F ++ + + + V E+L+ ++L
Sbjct: 83 KEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGP---VNLGENKQEAYKKVPELLKLVQL 139
Query: 789 --DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 846
D +K S L G Q++R+ +A + + + + +DEPT GLD + +
Sbjct: 140 PEDYVKRSPFELSG------GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLF 193
Query: 847 KNV-VETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889
+ + E + ++ H + D++I+M G I P
Sbjct: 194 ERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPF 236
|
Length = 289 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 58/212 (27%), Positives = 92/212 (43%), Gaps = 38/212 (17%)
Query: 695 LMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI---GGYPKVQHTFA---------RISGYC 742
LMG+SG+GK+TL+ ++G + G + + G V + A R+S
Sbjct: 55 LMGLSGSGKSTLLRAVNGLNP--VSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVSMVF 112
Query: 743 EQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG-- 800
+Q + P TVEE+V F ++ P+ + + + + E L+ LVGL
Sbjct: 113 QQFAL-LPWRTVEENVAFGLEMQGMPKAERRKRVD---EQLE----------LVGLAQWA 158
Query: 801 ---VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVV 857
LS ++R+ +A I+ MDEP S LD I + ++E +
Sbjct: 159 DRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALD---PLIRTQLQDELLELQSKLK 215
Query: 858 CTIHQPSIDIFEAFD--DLILMKNGGRIIYSG 887
TI S D+ EA + I + GGRII G
Sbjct: 216 KTIVFVSHDLDEALKIGNRIAIMEGGRIIQHG 247
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 801 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTV 856
LS +++ +A+ L + + +DE GLD R + A+ + G V
Sbjct: 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 857 VCTIHQPSIDIFEAFDDLILMK 878
+ H P ++ E D LI +K
Sbjct: 135 IVITHLP--ELAELADKLIHIK 154
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNG---YRLDEFVP---QKTSAYISQ 54
+ LLG G GK+TLL ++G SG + +G L++ +P ++
Sbjct: 28 IVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQD 84
Query: 55 YDL--HIAEMTVRETIDF 70
+ L H +TV E I
Sbjct: 85 FALFPH---LTVLENIAL 99
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 48/239 (20%), Positives = 91/239 (38%), Gaps = 63/239 (26%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGY---RLDEFVPQKTSAYISQYDLHIA 60
++G G GKTTL++ L G++ +G + + + Q D +
Sbjct: 34 IVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKSLRSMIGVVLQ-DTFLF 89
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGI--FPDPDVDAYMKAISVEGLEKNL 118
T+ E I G + +EVI+ K AG F + L
Sbjct: 90 SGTIMENIRL-------GRPNATDEEVIEAAKEAGAHDF-------------IMKLPNGY 129
Query: 119 QTDYILKILGLDICADTIVGDPMRRG--VSGGQKKRLTTGELIVGPTRALFMDEISNGLD 176
DT++G+ G +S G+++ L ++ + L +DE ++ +D
Sbjct: 130 ---------------DTVLGE---NGGNLSQGERQLLAIARAMLRDPKILILDEATSNID 171
Query: 177 SSTTFQIVSFLKHLVHITDATALI-----SLLQPAPETFDLFDDVMLMAEGKIVYHGPR 230
+ T I L+ L+ T++I S ++ A D ++++ +GKI+ G
Sbjct: 172 TETEKLIQEALEKLMK--GRTSIIIAHRLSTIKNA-------DKILVLDDGKIIEEGTH 221
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.004
Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 45/179 (25%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS---AYISQYDLHIA 60
L+G GCGK+T++S L SGE+ +G + + + +SQ + +
Sbjct: 34 LVGSSGCGKSTVVSLL---ERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQ-EPVLF 89
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
+ T+ E I + G + +EV + K A I
Sbjct: 90 DGTIAENIRY-------GKPDATDEEVEEAAKKANI-----------------------H 119
Query: 121 DYILKILGLDICADTIVGDPMRRGV--SGGQKKRLTTGELIVGPTRALFMDEISNGLDS 177
D+I+ L DT+VG+ RG SGGQK+R+ ++ + L +DE ++ LD+
Sbjct: 120 DFIMS---LPDGYDTLVGE---RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDA 172
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 54/243 (22%), Positives = 92/243 (37%), Gaps = 46/243 (18%)
Query: 4 LLGHPGCGKTTLLSALSG--KLSHSLKVSGEVSYNG-----YRLDEFVPQKTSAYISQYD 56
L+G GCGK+TLL + +L+ +V GEV G +D ++ + QY
Sbjct: 35 LMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYP 94
Query: 57 LHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEK 116
+T+ + + + G + E ++ A KA + + K
Sbjct: 95 NPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEW-------------ALKKAALWDEV-K 140
Query: 117 NLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLD 176
+ DY +SGGQ++RL + + L MDE + +D
Sbjct: 141 DRLNDY-------------------PSNLSGGQRQRLVIARALAMKPKILLMDEPTANID 181
Query: 177 SSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKF 236
T +I L L + T ++ PA + + D V + GK++ GP K
Sbjct: 182 PVGTAKIEELLFELK--KEYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGPTR---KV 235
Query: 237 FED 239
FE+
Sbjct: 236 FEN 238
|
Length = 253 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.004
Identities = 50/213 (23%), Positives = 84/213 (39%), Gaps = 11/213 (5%)
Query: 681 SDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGGYPKVQHTFAR 737
+I+ R G + L GV GAG+T L + L G + G I+ I Q
Sbjct: 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339
Query: 738 ISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLV 796
+ E + + A +K E N VL+ IK++
Sbjct: 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE--NAVLERYRRALNIKFNHA 397
Query: 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTV 856
LS ++++ IA L A+P ++ +DEPT G+D A + + ++++
Sbjct: 398 EQA-ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQN-VA 455
Query: 857 VCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889
V I ++ E D +L+ + G I SG L
Sbjct: 456 VLFI-SSDLEEIEQMADRVLVMHQGEI--SGAL 485
|
Length = 510 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 24/172 (13%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI----IEGDIRIGGY----P 729
+ L I+ F LTAL+G SG GK+T + L+ R I I G+I+ G
Sbjct: 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLN-RMNDDIENIKITGEIKFEGQNIYGS 76
Query: 730 KVQHTFARIS-GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL 788
K+ R G Q P +V ++V + L+++ D + + V E L+ +
Sbjct: 77 KMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAI 133
Query: 789 -----DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
D + + S Q++R+ IA L P ++ +DEPTS LD
Sbjct: 134 WKETKDNLDRN------AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.004
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 786 IELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 845
E DGI P LS + +R+ IA L+ N + DEP++ LD RA
Sbjct: 56 DEWDGITPVYK--PQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARA 113
Query: 846 VKNVVETGRTVV 857
++ + E G+
Sbjct: 114 IRRLSEEGKKTA 125
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.004
Identities = 46/201 (22%), Positives = 75/201 (37%), Gaps = 66/201 (32%)
Query: 669 KRGF--NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE----GD 722
KRG ++ ++ L ++ T G A++G SG GK+TL +L+ +IE G+
Sbjct: 18 KRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLT------MIETPTGGE 71
Query: 723 IRIGGYP--------------KVQHTFARISGYCEQNDIHS--PNITVEESVIFSAWLRL 766
+ G K+Q F QN S P V + I L +
Sbjct: 72 LYYQGQDLLKADPEAQKLLRQKIQIVF--------QNPYGSLNPRKKVGQ--ILEEPLLI 121
Query: 767 SPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE------------QRKRLTI 814
+ + + E ++ + GL E QR+R+ I
Sbjct: 122 NTSLSAAERREKALAMMAKV----------------GLRPEHYDRYPHMFSGGQRQRIAI 165
Query: 815 AVELVANPSIIFMDEPTSGLD 835
A L+ +P ++ DEP S LD
Sbjct: 166 ARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV-ETGRTVVCTIHQ 862
LS Q++R+ IA L P I DEPT+ LD V+ +K + + G T++ H
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHY 204
Query: 863 PSIDIFEAFD-DLILMKNGGRIIYSG 887
+ EA + D I++ + G+++ G
Sbjct: 205 ----MEEAVEADRIIVMDSGKVVMEG 226
|
Length = 280 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.004
Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 12/181 (6%)
Query: 670 RGFN----QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLM---DVLSGRKTGGIIEGD 722
R FN + +L D+ + +TA +G SG GK+T + + L+ G EG+
Sbjct: 84 RNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGE 143
Query: 723 IRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVI--FSAWLRLSPEIDLKTKAEFVN 780
I G + + + E S+ + R + D K + V
Sbjct: 144 IYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVE 203
Query: 781 EVLQTIEL-DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 839
+ L++ L D +K L + LS Q++RL IA + P ++ MDEPTS LD A
Sbjct: 204 KSLKSAALWDEVKDDLD--KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIAT 261
Query: 840 A 840
A
Sbjct: 262 A 262
|
Length = 329 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1252 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.98 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.98 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.98 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.98 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.98 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.98 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.98 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.98 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.98 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.98 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.98 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.98 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.98 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.98 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.98 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.98 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.98 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.98 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.98 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.98 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.98 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.98 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.97 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.97 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.97 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.97 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.97 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.97 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.97 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.97 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.97 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.97 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.97 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.97 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.97 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.97 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.97 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.97 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.97 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.97 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.97 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.97 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.97 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.97 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.97 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.97 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.97 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.97 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.97 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.97 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.97 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.97 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.97 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.97 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.97 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.97 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.97 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.97 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.97 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.97 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.97 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.97 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.97 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.97 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.97 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.97 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.97 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.97 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.97 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.97 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.97 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.97 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.97 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.97 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.97 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.97 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.97 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.97 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.97 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.97 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.97 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-193 Score=1753.19 Aligned_cols=1211 Identities=52% Similarity=0.895 Sum_probs=1103.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
|++++||+||||||||++|+|..+......|+|++||++.++..+++.++|++|+|.|++.+||||+|.|+++|++++.|
T Consensus 143 m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r 222 (1391)
T KOG0065|consen 143 MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSR 222 (1391)
T ss_pred eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccc
Confidence 68999999999999999999999876666889999999999988888999999999999999999999999999999887
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
++ ++.+.+++. ..+|.+++++||++|+||.||+...||+||||||||++|++++
T Consensus 223 ~~---~~~R~e~~~-----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v 276 (1391)
T KOG0065|consen 223 YD---EVSRREKLA-----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLV 276 (1391)
T ss_pred cc---cccHHHHHH-----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeee
Confidence 76 333333321 1468999999999999999999999999999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHHHhc
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f~~~ 240 (1252)
++++++++||+|+|||+.++.++++.|+++++..+.|.+++++||+++++++||+|++|++|+++|+||.+++++||+++
T Consensus 277 ~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~ 356 (1391)
T KOG0065|consen 277 GPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDM 356 (1391)
T ss_pred cCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCcccccccccccccc
Q 000853 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHKKALSFKKYSL 320 (1252)
Q Consensus 241 G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1252)
||.||++++++||++++++..+++++|.....+....+.+++.+.+.++..+.+...+.+.+.++.+.++.+...++|..
T Consensus 357 Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v 436 (1391)
T KOG0065|consen 357 GFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSV 436 (1391)
T ss_pred CccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceec
Confidence 99999999999999999998888888887777777788899999999999999998888888777777777888899999
Q ss_pred cHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 000853 321 TKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTA 400 (1252)
Q Consensus 321 ~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~ 400 (1252)
+.|.|+++|..|.+..++||...+.+...+.+++++++|++|++... .+..+.+.+.+++||++++.++++++++...+
T Consensus 437 ~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~-~t~~~~~~~~~~lffsll~~~f~~laEi~~~~ 515 (1391)
T KOG0065|consen 437 PYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM-STTSGGYSRGGALFFALLFNLFNGLAEIALTF 515 (1391)
T ss_pred cHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC-cccccchhhhhHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999998773 44446788999999999999999999999999
Q ss_pred hhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000853 401 SRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480 (1252)
Q Consensus 401 ~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~ 480 (1252)
+++++|+|+|...+|++|++.++..++++|..++..++|..|+||++|+.+++++||.+++.++..+.++.+++++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCccccc------------cCC-
Q 000853 481 FRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKI------------TSG- 547 (1252)
Q Consensus 481 ~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~~~------------~~~- 547 (1252)
+++...|+.++++.++++.+++||++|...||+||+|++|++|+.|++++++.|||.+++|+|. ...
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999887 111
Q ss_pred ---cccccchhhhccCcc-----cCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhcccccccccCCCC
Q 000853 548 ---NTTVGRQTLESRGLN-----FDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSS 619 (1252)
Q Consensus 548 ---~~~~g~~~l~~~~~~-----~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1252)
....|.++++.+++. +...|+|++++++++|.++|.++..+++.+.++....+.+...++.......+...
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~- 754 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAG- 754 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhcc-
Confidence 245688888887766 78889999999999999999999999999999888877766554433221111000
Q ss_pred CCCCCcccccCCCCCCCCCCCCCccCCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCC
Q 000853 620 GSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVS 699 (1252)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~n 699 (1252)
..... +... ........+..++..+..++++||.+..+.+-.++..| +++++|+|||+.++||.++||||+|
T Consensus 755 -~~~~~---~~~~-~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~S 826 (1391)
T KOG0065|consen 755 -SSSEI---EKLD-DSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGES 826 (1391)
T ss_pred -ccccc---cccc-cccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCC
Confidence 00000 0000 00000123445566677788888888777765554333 5788999999999999999999999
Q ss_pred CCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHH
Q 000853 700 GAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFV 779 (1252)
Q Consensus 700 GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~ 779 (1252)
||||||||++|+||...+.++|+|++||.+.++..++|.+|||.|+|.|.+.+||||.|.|+|.||++.+.+.+++.++|
T Consensus 827 GAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yV 906 (1391)
T KOG0065|consen 827 GAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYV 906 (1391)
T ss_pred CCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 99999999999999988899999999999988788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Q 000853 780 NEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVC 858 (1252)
Q Consensus 780 ~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p-~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~ 858 (1252)
+++++.++|++++|.+||.++ +|||.+||||++||.+|+.|| .||+|||||||||++++..|++.+|+++++|+||+|
T Consensus 907 e~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlC 985 (1391)
T KOG0065|consen 907 EEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILC 985 (1391)
T ss_pred HHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999998 999999999999999999999 899999999999999999999999999999999999
Q ss_pred EecCCCHHHHHHhcceeeeecCcEEEEecCCCCcchhHHHHHhhCCCcccCCCCCCcccceeeccCCcchhhcccchHHH
Q 000853 859 TIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQI 938 (1252)
Q Consensus 859 ~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1252)
|+||||.++++.||++++|.+||++||.||++++.+++++||++++|. +|++..|||||++|+++...+.....||++.
T Consensus 986 TIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~-~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~ 1064 (1391)
T KOG0065|consen 986 TIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGV-KCISDENPAEWMLEVIGAGAEASLSVDFAEI 1064 (1391)
T ss_pred EecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCc-cCCCCCChHHHHHhhcccccccccCccHHHH
Confidence 999999999999999999999999999999999999999999999876 6777779999999999988888788899999
Q ss_pred hhhhhHHHHHHHHhhhcCCCCCC-CCCCCCCCCCCCchHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcc
Q 000853 939 YRESTLHQENKELGKQLSSPSPG-SKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQ 1017 (1252)
Q Consensus 939 ~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~ 1017 (1252)
|++|+++++++++++.++.+.++ ..+....++|++|+|.|++.+++|+++.+||+|.|+++|++.+++.||++|+.||+
T Consensus 1065 w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~ 1144 (1391)
T KOG0065|consen 1065 WKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWK 1144 (1391)
T ss_pred HhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeee
Confidence 99999999999999999888777 55556667899999999999999999999999999999999999999999999999
Q ss_pred cCCCCccHHhHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000853 1018 QGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVII 1097 (1252)
Q Consensus 1018 ~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~~~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i 1097 (1252)
+|+ ++++++|.+|++|.++++.+..+.....+.+..||.+++||+.+|+|++.||++|++++|+|+.++++++|.+|
T Consensus 1145 ~g~---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~ 1221 (1391)
T KOG0065|consen 1145 VGH---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLI 1221 (1391)
T ss_pred cCC---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 984 68999999999999999988887777778888899999999999999999999999999999999999999999
Q ss_pred hhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhC
Q 000853 1098 TYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLC 1177 (1252)
Q Consensus 1098 ~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~s 1177 (1252)
+|+|+||.+++.+|++|++.+++..++.+++|+++.+++||.++|+.+.+++++++.+|||+++|++.||.||+|+||+|
T Consensus 1222 ~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~ls 1301 (1391)
T KOG0065|consen 1222 TYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLS 1301 (1391)
T ss_pred eeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcceecccC-------CcccHHHHHhhhcC----CcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 000853 1178 PTSWVLNGMLSSQYGDIEKEISAFG-------ETKTVSGFLDDYFG----FNHDLLGVVGIVLLIFPIVFASLFAYFIGK 1246 (1252)
Q Consensus 1178 p~~y~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~il~~~~~~~~~~~~~~l~~ 1246 (1252)
|++|.+++++..+++|.+..|...+ ...|+++|+..++| +.++.......+..++.+++..++.+.+|+
T Consensus 1302 P~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y 1381 (1391)
T KOG0065|consen 1302 PVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKY 1381 (1391)
T ss_pred cHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHH
Confidence 9999999999999999988775332 12789999999999 777766555556677889999999999999
Q ss_pred cccccC
Q 000853 1247 LNFQRR 1252 (1252)
Q Consensus 1247 ~~~~~~ 1252 (1252)
.++++|
T Consensus 1382 ~~~wrn 1387 (1391)
T KOG0065|consen 1382 LNFWRN 1387 (1391)
T ss_pred HHHHHh
Confidence 999886
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-189 Score=1854.45 Aligned_cols=1252 Identities=57% Similarity=1.030 Sum_probs=1085.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
+++|+||||||||||||+|+|+++|+.+++|+|.+||+++++...++.++||+|+|.+++++||+|||.|++++++.+.+
T Consensus 193 ~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~ 272 (1470)
T PLN03140 193 MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTR 272 (1470)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCc
Confidence 58999999999999999999999886667999999999987666677899999999999999999999999988765544
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
.+...+..+.++..+..|+.+.+.++++....+.+.+..++++++.+||++++||.||+...+||||||||||+||++|+
T Consensus 273 ~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~ 352 (1470)
T PLN03140 273 YDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIV 352 (1470)
T ss_pred ccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhc
Confidence 43333344445555555556666777776666666666789999999999999999999999999999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHHHhc
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f~~~ 240 (1252)
++|+++||||||+|||+.++.++++.|+++++..++|+++++|||+++++++||+|++|++|+++|+|+.+++.+||+++
T Consensus 353 ~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~l 432 (1470)
T PLN03140 353 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESC 432 (1470)
T ss_pred CCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHc
Confidence 99999999999999999999999999999987778999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCcccccccccccccc
Q 000853 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHKKALSFKKYSL 320 (1252)
Q Consensus 241 G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1252)
||.||++.||+||++++.++.+++++|.....|....+++++.++|+.+..++...++.+.+..+...++.....+.|..
T Consensus 433 Gf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 512 (1470)
T PLN03140 433 GFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSV 512 (1470)
T ss_pred CCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcC
Confidence 99999999999999999988766555544444445577889999999887776665554433322222222233456888
Q ss_pred cHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCc-chHhHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 000853 321 TKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAV-DVLHANAYLGALFYALMILIVNGFPELNMT 399 (1252)
Q Consensus 321 ~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~-~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~ 399 (1252)
++|.|++.|.+|.+..++||+..+..+.++.+++++++|++|++.+... +..+...+.|.+||+++..+++++.++...
T Consensus 513 s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~ 592 (1470)
T PLN03140 513 PKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALM 592 (1470)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999875443 223456678999999888888888999999
Q ss_pred hhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000853 400 ASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIAS 479 (1252)
Q Consensus 400 ~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~ 479 (1252)
+.++++|+|||...+|++|+|++++.+.++|+.++.+++|+.++|||+|+.+++++|+.+++++++.++++.++++++++
T Consensus 593 ~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a 672 (1470)
T PLN03140 593 IQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIAS 672 (1470)
T ss_pred HhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCcccccc--CCcccccchhhh
Q 000853 480 LFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKIT--SGNTTVGRQTLE 557 (1252)
Q Consensus 480 ~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~~~~--~~~~~~g~~~l~ 557 (1252)
+++++.+|..+++++++++++++||+++...||.||+|++|+||+.|++++++.|||.+..|.... ......|..+++
T Consensus 673 ~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~ 752 (1470)
T PLN03140 673 VCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLN 752 (1470)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887765322 224578999999
Q ss_pred ccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhcccccccccCCC--------CCC---CC---
Q 000853 558 SRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGS--------SGS---DR--- 623 (1252)
Q Consensus 558 ~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~--- 623 (1252)
.+++...+.|+|.+++++++|.++|.++.++++.+.+...........+............ ... ..
T Consensus 753 ~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1470)
T PLN03140 753 IFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQR 832 (1470)
T ss_pred hcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhccccccccccccccccccccccccc
Confidence 9999888889999999999999999999999999987544433332211111000000000 000 00
Q ss_pred -C-ccc----ccCC-CCCCCCCCCCCccCCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEe
Q 000853 624 -D-KKH----IDAP-LKTTAGPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALM 696 (1252)
Q Consensus 624 -~-~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~ 696 (1252)
. ... .... ..........+..++..+.+++|+|++|.++.+...++.+...+++++|+|||++++|||++||+
T Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~ 912 (1470)
T PLN03140 833 MSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALM 912 (1470)
T ss_pred cccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEE
Confidence 0 000 0000 00000111223345677889999999999987765444444445668999999999999999999
Q ss_pred cCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHH
Q 000853 697 GVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKA 776 (1252)
Q Consensus 697 G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~ 776 (1252)
||||||||||||+|+|+.+++..+|+|.+||.+.....+++.+|||+|+|.+++.+||+|++.|++.+|.+.+.+.++++
T Consensus 913 G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~ 992 (1470)
T PLN03140 913 GVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKM 992 (1470)
T ss_pred CCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHH
Confidence 99999999999999998776567999999998865445667899999999999999999999999888765555566667
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEE
Q 000853 777 EFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTV 856 (1252)
Q Consensus 777 ~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tv 856 (1252)
++++++++.++|.+++|+.+|.+++++|||||||||+||++|+.+|++|||||||||||+.++..+++.|++++++|+||
T Consensus 993 ~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tV 1072 (1470)
T PLN03140 993 MFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1072 (1470)
T ss_pred HHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 78999999999999999999988778999999999999999999999999999999999999999999999999889999
Q ss_pred EEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCcchhHHHHHhhCCCcccCCCCCCcccceeeccCCcchhhcccchH
Q 000853 857 VCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFG 936 (1252)
Q Consensus 857 i~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (1252)
|+++|||+.++++.||++++|.+||+++|+||+++..+++.+||++++|.++||++.|||||++|+++...+.....+|+
T Consensus 1073 I~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~ 1152 (1470)
T PLN03140 1073 VCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFA 1152 (1470)
T ss_pred EEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHH
Confidence 99999999778899999999987799999999988778999999999777679999999999999987665555556899
Q ss_pred HHhhhhhHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhc
Q 000853 937 QIYRESTLHQENKELGKQLSSPSPGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFW 1016 (1252)
Q Consensus 937 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~ 1016 (1252)
+.|++|+.+++.++.++++..+.+........++++.++|+|+++|++|+++++||||.++.+|+++++++|+++|++||
T Consensus 1153 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~ 1232 (1470)
T PLN03140 1153 EHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFW 1232 (1470)
T ss_pred HHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999988877666665544433333345678899999999999999999999999999999999999999999999
Q ss_pred ccCCCCccHHhHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 000853 1017 QQGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVI 1096 (1252)
Q Consensus 1017 ~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~~~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~ 1096 (1252)
+++++..++++++++.|++|+++++.++.++++++|.+..||++|+||+++|+|++++|++|++++|+|+.++++++|.+
T Consensus 1233 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~ 1312 (1470)
T PLN03140 1233 KVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTL 1312 (1470)
T ss_pred CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhh
Q 000853 1097 ITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYL 1176 (1252)
Q Consensus 1097 i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~ 1176 (1252)
|+|||+||++++.+||+|+++++++.++++++|+++++++|+.++|..+++++++++++||||++|+++||+||+|++|+
T Consensus 1313 i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~i 1392 (1470)
T PLN03140 1313 IVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWI 1392 (1470)
T ss_pred HHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcceecccCC--cccHHHHHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 000853 1177 CPTSWVLNGMLSSQYGDIEKEISAFGE--TKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252 (1252)
Q Consensus 1177 sp~~y~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~~ 1252 (1252)
||++|+++|++.|||++.+.+|.++|. ..++.+|++++|||+++++|++++++++|+++|+++++++++++|||||
T Consensus 1393 sp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1393 CPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred CHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 999999999999999998877776652 2578899999999999999999999999999999999999999999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-168 Score=1659.45 Aligned_cols=1199 Identities=31% Similarity=0.532 Sum_probs=984.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC-CceeEEEEECCccCCCcc--ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHS-LKVSGEVSYNGYRLDEFV--PQKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~-~~~~G~V~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
+++|+||||||||||||+|+|+.++. ...+|+|.+||.++++.. .++.++||+|+|.+++++||+||+.|+++++.+
T Consensus 89 ~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 168 (1394)
T TIGR00956 89 LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTP 168 (1394)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCC
Confidence 58999999999999999999997421 125999999998875322 345699999999999999999999999877643
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
..+.....+ .+ + .+..++.+++.+||+++.||.||+...+||||||||||+||+
T Consensus 169 ~~~~~~~~~---~~-------------~----------~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~ 222 (1394)
T TIGR00956 169 QNRPDGVSR---EE-------------Y----------AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAE 222 (1394)
T ss_pred CCCCCCCCH---HH-------------H----------HHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHH
Confidence 211100000 00 0 011246689999999999999999899999999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHH
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFF 237 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f 237 (1252)
+|+++|+|++|||||||||+.++.++++.|+++++..|+|+++++|||+.+++++||+|++|++|+++++|+.+++.+||
T Consensus 223 aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF 302 (1394)
T TIGR00956 223 ASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYF 302 (1394)
T ss_pred HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHH
Confidence 99999999999999999999999999999999987668999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCC-----------
Q 000853 238 EDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKS----------- 306 (1252)
Q Consensus 238 ~~~G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~----------- 306 (1252)
+++||.||++.||+||+.++.++.++.. ... .+.....+++++.+.|+.+..+++..++.+......
T Consensus 303 ~~lG~~~p~~~n~aDfl~~~~~~~~~~~-~~~-~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1394)
T TIGR00956 303 EKMGFKCPDRQTTADFLTSLTSPAERQI-KPG-YEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRE 380 (1394)
T ss_pred HHcCCCCCCCCChHHHHHhccChhhhhc-ccc-ccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHH
Confidence 9999999999999999999987654321 111 011123467788888888876555444433211110
Q ss_pred ----cccccccccccccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHH
Q 000853 307 ----ETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALF 382 (1252)
Q Consensus 307 ----~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf 382 (1252)
+........+.+..++|+|++.|.+|.+...+||+..+..+.++.+++++++|++|++.+. +..+.+.+.|++|
T Consensus 381 ~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~--~~~~~~~r~g~lf 458 (1394)
T TIGR00956 381 SHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK--NTSDFYSRGGALF 458 (1394)
T ss_pred HHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC--CchhHHHHHHHHH
Confidence 0000111234577889999999999999999999999999999999999999999997653 4446678899999
Q ss_pred HHHHHHHHhhHHHHHHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHH
Q 000853 383 YALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLL 462 (1252)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~ 462 (1252)
+++++..+.++.++.....+|++|+|||..++|++++|++++.+.++|+.++.+++|+.++|||+|+..++++|+.++++
T Consensus 459 ~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~ 538 (1394)
T TIGR00956 459 FAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLI 538 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHH
Confidence 99998888888888777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCccc
Q 000853 463 LFTVHLTSISLFRAIASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWE 542 (1252)
Q Consensus 463 ~~~~~~~~~~~~~~i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~ 542 (1252)
.++..+++.+++.++++++++...|..+++++++++++++||+++...||+||+|++|+||++|++++++.|||.+..++
T Consensus 539 ~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~ 618 (1394)
T TIGR00956 539 LFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFE 618 (1394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred ccc--C----------------------C-cccccchhhhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000853 543 KIT--S----------------------G-NTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPG 597 (1252)
Q Consensus 543 ~~~--~----------------------~-~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~~~~ 597 (1252)
|.. + + ....|.++++. .+.+...++|.+++++++|.++|.++.++++.+.+...
T Consensus 619 C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~~ 697 (1394)
T TIGR00956 619 CSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAK 697 (1394)
T ss_pred ccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 631 0 0 12356677764 55566778999999999999999999999999877544
Q ss_pred Ccccccchhccc--c----cccccCCCCCCCCCcccccCCCCCCCCCCCCCcc-CC--CCCcEEEEEeEEEEEecCcccc
Q 000853 598 KSRTIIAYEKYS--K----LQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMV-LP--FEPLTLTFEDVQYYVDTPSAMK 668 (1252)
Q Consensus 598 ~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~ 668 (1252)
..+.....++.. . ..+.+......++.......+... ..+...... .+ .....++++|+++.++.+
T Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~---- 772 (1394)
T TIGR00956 698 QKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTD-ESDDVNDEKDMEKESGEDIFHWRNLTYEVKIK---- 772 (1394)
T ss_pred CCCceEeeccccccchhhcccccccccccccccccCCCCcccc-ccccccccccccccCCCceEEEEeeEEEecCC----
Confidence 433222221100 0 000000000000000000000000 000000000 00 112458999999887422
Q ss_pred cccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-eEEEEEEECCeeCCcccccceEEEEccCCC
Q 000853 669 KRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYPKVQHTFARISGYCEQNDI 747 (1252)
Q Consensus 669 ~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~ 747 (1252)
.+++.+|+|||++++|||++||+||||||||||||+|+|+.+++ +.+|+|.+||++.. ..+++.+|||+|+|.
T Consensus 773 -----~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~-~~~~~~i~yv~Q~~~ 846 (1394)
T TIGR00956 773 -----KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD-SSFQRSIGYVQQQDL 846 (1394)
T ss_pred -----CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-hhhhcceeeeccccc
Confidence 13467999999999999999999999999999999999987643 46799999999874 356778999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc-EEE
Q 000853 748 HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPS-IIF 826 (1252)
Q Consensus 748 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~-ill 826 (1252)
+++.+||+|++.|++.+|.+...+.++++++++++++.++|.++.|+.+|.++ .+|||||||||+||++|+.+|+ ||+
T Consensus 847 ~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia~aL~~~P~~iLl 925 (1394)
T TIGR00956 847 HLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLF 925 (1394)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHHHHHHcCCCeEEE
Confidence 99999999999999988865555666777889999999999999999998654 4899999999999999999997 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCcchhHHHHHhhCCCc
Q 000853 827 MDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFESIPGV 906 (1252)
Q Consensus 827 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~ 906 (1252)
|||||||||+.++..+++.|++++++|+|||+++|||+..+++.||++++|.+||+++|.|++++..+++.+||+.. |.
T Consensus 926 LDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~-G~ 1004 (1394)
T TIGR00956 926 LDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKH-GA 1004 (1394)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhc-CC
Confidence 99999999999999999999999888999999999998767788999999998779999999988778899999997 44
Q ss_pred ccCCCCCCcccceeeccCCcchhhcccchHHHhhhhhHHHHHHHHhhhcCCCCCCC---CCCCCCCCCCCchHHHHHHHH
Q 000853 907 LKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSPGS---KDLHFPTHFPQNGWEQFKACL 983 (1252)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~~l~ 983 (1252)
++||++.|||||++|+++...+.....+|.+.|++|+.+++..+.++....+.... .......+++.|+|+|+++|+
T Consensus 1005 ~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~ 1084 (1394)
T TIGR00956 1005 PKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVL 1084 (1394)
T ss_pred CCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHH
Confidence 57999999999999998765443334689999999988776654444332221111 111112468899999999999
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcccCCCCccHHhHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhHHH-H
Q 000853 984 WKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVL-Y 1062 (1252)
Q Consensus 984 ~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~~~-~ 1062 (1252)
+|+++++||||.++++|+++++++|+++|++||++++ +++++++|.|++|+++++.++. +...+|.|+.||.+| +
T Consensus 1085 ~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~ 1160 (1394)
T TIGR00956 1085 WRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEV 1160 (1394)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999975 4688999999999988877765 445667788888886 8
Q ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHH-------HHHHHHHHHHHHHHHHHHHHHHhhc
Q 000853 1063 RERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYK-------IFWSLHGTFCNLLYFNYMGMLMVSL 1135 (1252)
Q Consensus 1063 rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~y~~~gl~~~~~~-------f~~~~~~~~~~~~~~~~~~~~~~~~ 1135 (1252)
||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+||++++.. |++|++++++..++++++|++++++
T Consensus 1161 RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~ 1240 (1394)
T TIGR00956 1161 RERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISF 1240 (1394)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988766 9999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCCcceecc---------cC----
Q 000853 1136 TPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISA---------FG---- 1202 (1252)
Q Consensus 1136 ~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~~~~~~~~~~~~~---------~~---- 1202 (1252)
+|+..+|+.++++++.++++||||++++++||+||+|++|+||++|+++|++.|||++.+.+|.. +|
T Consensus 1241 ~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~ 1320 (1394)
T TIGR00956 1241 NPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCG 1320 (1394)
T ss_pred CCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999988755421 01
Q ss_pred ---------------------Cc-----ccHHHHHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000853 1203 ---------------------ET-----KTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNF 1249 (1252)
Q Consensus 1203 ---------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1249 (1252)
.| .++.+ ++..+|++.++.|+|++++++|++++ ++++++|.+..+
T Consensus 1321 ~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~-~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956 1321 EYMKPYLENAGGYLLNPNATDSCSFCQYSYTND-FLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLAR 1391 (1394)
T ss_pred HHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHH-HHHHcCCcccccccchhhhhHHHHHH-HHHHHhhheEEE
Confidence 01 13344 45578999999999999999999988 888888887644
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-96 Score=904.64 Aligned_cols=584 Identities=24% Similarity=0.408 Sum_probs=483.3
Q ss_pred CCcEEEEEeEEEEEecCcc----------------cccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHh
Q 000853 648 EPLTLTFEDVQYYVDTPSA----------------MKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS 711 (1252)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~ 711 (1252)
.++++++.|++|.++.... .++....++++.+|+|||+++++||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 4678999999998864420 111122334678999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc
Q 000853 712 GRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI 791 (1252)
Q Consensus 712 g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~ 791 (1252)
|+.+++..+|+|.+||++... ..++.+|||+|++.+++.+||+|++.|++.++.+.....++++++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 987654468999999998643 3345689999999999999999999998877755444556667789999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHh
Q 000853 792 KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAF 871 (1252)
Q Consensus 792 ~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 871 (1252)
.|+.+|+...++||||||||++||++|+++|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++.+.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999988889999999999999999999999999999999999999999999999998889999999999987788999
Q ss_pred cceeeeecCcEEEEecCCCCcchhHHHHHhhCCCcccCCCCCCcccceeeccCCcchh------hc---ccchHHHhhhh
Q 000853 872 DDLILMKNGGRIIYSGPLGQHSCKVIDYFESIPGVLKIKDNYNPATWMLEVSSSSIET------EL---GVDFGQIYRES 942 (1252)
Q Consensus 872 d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~s 942 (1252)
|++++|. +|++++.|++ +++.+||+++| .+||++.|||||++++.+.+.+. .. .....+.|+..
T Consensus 275 D~iilL~-~G~iv~~G~~----~~~~~~f~~~G--~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLS-EGRCLFFGKG----SDAMAYFESVG--FSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEec-CCcEEEECCH----HHHHHHHHHCC--CCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 9999997 5899999997 57899999995 47999999999999998753210 00 01122334321
Q ss_pred hHHHHHHHHhhh--cCC-CCC-----CCCCC-CCCCCCCCchHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Q 000853 943 TLHQENKELGKQ--LSS-PSP-----GSKDL-HFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGI 1013 (1252)
Q Consensus 943 ~~~~~~~~~~~~--~~~-~~~-----~~~~~-~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~ 1013 (1252)
. .++..+..+. ... ... ..+.. .....+..+||+|+.+|++|++++ |||+.+...|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111110 000 000 00000 011234578999999999999988 89999999999999999999999
Q ss_pred HhcccCCCCccHHhHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 000853 1014 LFWQQGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVI 1093 (1252)
Q Consensus 1014 ~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~~~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~ 1093 (1252)
+||+++ ..++++|.|++||++++.++.+++++++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999974 467999999999999998888888889999999999999999999999999999999999999999999
Q ss_pred HhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhh
Q 000853 1094 YVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWA 1173 (1252)
Q Consensus 1094 ~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~ 1173 (1252)
|++|+|||+||++++.+||+|+++++++.++++++|+++++++|+..+|+.++|++++++++|+||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred hhhCHHHHHHHHHHHHhhCCCcc-----eecccC-CcccHHHHHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 000853 1174 YYLCPTSWVLNGMLSSQYGDIEK-----EISAFG-ETKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKL 1247 (1252)
Q Consensus 1174 ~y~sp~~y~~~~l~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~ 1247 (1252)
+|+||++|+||++++|||++.+. +|..+. .......+ ....+++..+.|.++++|++++++||+++|++|+++
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKF-VEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCcc-chhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999986532 342111 00011112 223344456789999999999999999999999988
Q ss_pred cc
Q 000853 1248 NF 1249 (1252)
Q Consensus 1248 ~~ 1249 (1252)
+|
T Consensus 658 ~~ 659 (659)
T PLN03211 658 KH 659 (659)
T ss_pred cC
Confidence 75
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-96 Score=897.60 Aligned_cols=580 Identities=32% Similarity=0.538 Sum_probs=506.0
Q ss_pred CCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-eEEEEEEEC
Q 000853 648 EPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIG 726 (1252)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~ 726 (1252)
.++.+.|+|+++..+.+.. +.+++|+|||++++|||++||||||||||||||++|+|+..++ ..+|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 4567899999987754321 3578999999999999999999999999999999999998763 689999999
Q ss_pred CeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 727 GYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 727 g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
|++...+.+++.+|||+|||.+++++||+|++.|+|.+|++...+.++++++|+++++.+||.+++|+++|+...+++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999888889999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+|+|||+.+++++||++++|.+ |+++|.
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 899999
Q ss_pred cCCCCcchhHHHHHhhCCCcccCCCCCCcccceeeccCCc-chhhcccchHHHhhhh------hHHHHHHH-HhhhcCCC
Q 000853 887 GPLGQHSCKVIDYFESIPGVLKIKDNYNPATWMLEVSSSS-IETELGVDFGQIYRES------TLHQENKE-LGKQLSSP 958 (1252)
Q Consensus 887 g~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s------~~~~~~~~-~~~~~~~~ 958 (1252)
|++ +++.+||++.| .+||++.||+||++|+.+.. ..+.. .+..+.++.. +...+..+ ..+.....
T Consensus 253 G~~----~~~~~ff~~~G--~~~P~~~Npadf~l~l~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (613)
T KOG0061|consen 253 GSP----RELLEFFSSLG--FPCPELENPADFLLDLLSVDSGTREL-EEAVRIAKLINKFSQTDNLKKTLEALEKSLSTS 325 (613)
T ss_pred cCH----HHHHHHHHhCC--CCCCCcCChHHHHHHHHccCCCchhH-HhHHHHHHHhhhccccchhhhhHHHHhhhcccc
Confidence 998 57899999995 46999999999999988742 11100 0111111110 00011100 00011000
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcccCCCCccHHhHHhHHHHHHHH
Q 000853 959 SPGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGKKIKTQQEVFNMFGAMYSA 1038 (1252)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~ 1038 (1252)
. ..+.....+||.|+++|++|.+++.+|||.+...|.++.+++|+++|++||++++ +..+++++.|++|+.
T Consensus 326 ----~--~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~ 396 (613)
T KOG0061|consen 326 ----K--KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFI 396 (613)
T ss_pred ----c--ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHH
Confidence 0 0111126899999999999999999999999999999999999999999999965 456777999999999
Q ss_pred HHHHHHHhhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHH
Q 000853 1039 AIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGT 1118 (1252)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~er~~~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~ 1118 (1252)
+.+..+..+.+.++.|+.||++|.||+.+|+|+.++|++|+.++++|+.++.+++|.+|+|||+|++++..+|++|++++
T Consensus 397 ~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~ 476 (613)
T KOG0061|consen 397 LSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLII 476 (613)
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCCccee
Q 000853 1119 FCNLLYFNYMGMLMVSLTPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEI 1198 (1252)
Q Consensus 1119 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~~~~~~~~~~~ 1198 (1252)
++..++++++|++++++.||...|+.++++++++|++|+||+++.++||+||+|++|+|+++|++||+++|||.+....|
T Consensus 477 ~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~ 556 (613)
T KOG0061|consen 477 LLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRC 556 (613)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999733333
Q ss_pred ccc--CCcccHHHHHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 000853 1199 SAF--GETKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252 (1252)
Q Consensus 1199 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~~ 1252 (1252)
... ..+...++.++.+.++++++.|.|+.++++++++||+++|++|++..+.+|
T Consensus 557 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 557 FLSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred ccCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 222 122333445677899999999999999999999999999999998776654
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-94 Score=896.65 Aligned_cols=568 Identities=30% Similarity=0.462 Sum_probs=497.3
Q ss_pred cccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-eEEEEEEECCeeCCcccccceEEEEccCCCCCCCCC
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNIT 753 (1252)
Q Consensus 675 ~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~t 753 (1252)
+++.+|+|+|++++|||+++|+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999987643 358999999998765667788999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000853 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 832 (1252)
Q Consensus 754 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~-~~~lSgGqrqrv~ia~al~~~p~illlDEPTs 832 (1252)
|+||+.|++.++.+.....++++++++++++.+||.+++|+.+|+++ .++|||||||||+||++|+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999998876666667778889999999999999999999753 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCcchhHHHHHhhCCCcccCCCC
Q 000853 833 GLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFESIPGVLKIKDN 912 (1252)
Q Consensus 833 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~ 912 (1252)
|||+.++..+++.|++++++|+|||+++|||+.++.+.||++++|. +|+++|.|++ +++.+||+++| .+||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~g--~~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDLG--HPCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHcC--CCCCCC
Confidence 9999999999999999988899999999999888999999999997 5899999998 56889999995 479999
Q ss_pred CCcccceeeccCCcchhh-----cccchHHHhhhhhHHHHHHHHhhhcCCCCC---CCCCCCCCCCCCCchHHHHHHHHH
Q 000853 913 YNPATWMLEVSSSSIETE-----LGVDFGQIYRESTLHQENKELGKQLSSPSP---GSKDLHFPTHFPQNGWEQFKACLW 984 (1252)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~ 984 (1252)
.||+||++++.+.+.+.. ...++.+.|++++.+++..+.......+.. .........++..+||.|+++|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 999999999876543211 112455666666655544433222111110 011111223567899999999999
Q ss_pred HHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcccCCCCccHHhHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhHHHHHH
Q 000853 985 KQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRE 1064 (1252)
Q Consensus 985 R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~~~~rE 1064 (1252)
|++++.||||.++..|+++++++|+++|++||+++. ++++++++.|++|++++++++.+++.+++.++.||++|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999875 46789999999999999999988888889999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Q 000853 1065 RFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQLASI 1144 (1252)
Q Consensus 1065 ~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 1144 (1252)
+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|++++++..++++++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCCcc-eecc---cCCcccHHHHHhhhcCCccc
Q 000853 1145 LASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEK-EISA---FGETKTVSGFLDDYFGFNHD 1220 (1252)
Q Consensus 1145 ~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~ 1220 (1252)
+++++++++++|+||+++.++||+||+|++|+||++|++++++.|||.+.+. +|.. ++.+...++++++.||++.+
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~ 585 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA 585 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999988764 4421 11121224778889999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 000853 1221 LLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252 (1252)
Q Consensus 1221 ~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~~ 1252 (1252)
+.|.++++|++++++|++++|++||+-.+.+|
T Consensus 586 ~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 586 DLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999777766
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-91 Score=931.57 Aligned_cols=565 Identities=23% Similarity=0.351 Sum_probs=491.8
Q ss_pred cccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC--CeEEEEEEECCeeCCc--ccccceEEEEccCCCCCC
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--GIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSP 750 (1252)
Q Consensus 675 ~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~--~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~ 750 (1252)
+++++|+|||+++++||+++|+||||||||||||+|+|+..+ .+.+|+|.+||.+... ..+++.++|++|+|.+++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 356799999999999999999999999999999999998632 2469999999987642 235667999999999999
Q ss_pred CCCHHHHHHHHHHccCCC----CCCHHHHHHH-HHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEE
Q 000853 751 NITVEESVIFSAWLRLSP----EIDLKTKAEF-VNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 825 (1252)
Q Consensus 751 ~~tv~e~l~~~~~l~~~~----~~~~~~~~~~-~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~il 825 (1252)
.+||+|++.|++.++.+. +...++.+++ ++++++.+||.+++|+.+|++.+++|||||||||+||++|+.+|+++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999998877532 1233343333 46789999999999999999889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCcchhHHHHHhhCC
Q 000853 826 FMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFESIP 904 (1252)
Q Consensus 826 llDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~ 904 (1252)
+|||||+|||+.++..+++.|++++++ |+|||+++|||+.++.+.||++++|.+ |+++|+|++ +++.+||+++|
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~lG 306 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKMG 306 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHcC
Confidence 999999999999999999999999864 999999999998789999999999985 899999997 57899999995
Q ss_pred CcccCCCCCCcccceeeccCCcch-------h---hcccchHHHhhhhhHHHHHHHHhhhcCCC--C-------------
Q 000853 905 GVLKIKDNYNPATWMLEVSSSSIE-------T---ELGVDFGQIYRESTLHQENKELGKQLSSP--S------------- 959 (1252)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~--~------------- 959 (1252)
.+||++.|||||++++++.+.. . ....++++.|++|+.+++..+.++..... .
T Consensus 307 --~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1394)
T TIGR00956 307 --FKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVA 384 (1394)
T ss_pred --CCCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHh
Confidence 3799999999999998875321 1 12347889999998777655443321111 0
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcccCCCCccHHhHHhHHHHHHHHH
Q 000853 960 PGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGKKIKTQQEVFNMFGAMYSAA 1039 (1252)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~ 1039 (1252)
...+.....+++..|+|+|+++|++|+++++||||.+++.|+++++++|+++|++||+++. +++++++|.|++||++
T Consensus 385 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~ 461 (1394)
T TIGR00956 385 KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAI 461 (1394)
T ss_pred hhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHH
Confidence 0001112234678899999999999999999999999999999999999999999999975 4578999999999999
Q ss_pred HHHHHHhhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHH
Q 000853 1040 IFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTF 1119 (1252)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~er~~~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~ 1119 (1252)
++.++.++.++ +.++.||+||+||+.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++
T Consensus 462 ~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~ 540 (1394)
T TIGR00956 462 LFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILF 540 (1394)
T ss_pred HHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHH
Confidence 99999887765 45667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCCcceec
Q 000853 1120 CNLLYFNYMGMLMVSLTPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEIS 1199 (1252)
Q Consensus 1120 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~~~~~~~~~~~~ 1199 (1252)
++.++++++|+++++++||..+|+.+++++++++++|+||++|+++||+||+|++|+||++|+|||+++|||++.+.+|.
T Consensus 541 l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~ 620 (1394)
T TIGR00956 541 ICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECS 620 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777663
Q ss_pred c------------------------cCCc-ccHHHHHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000853 1200 A------------------------FGET-KTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQ 1250 (1252)
Q Consensus 1200 ~------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 1250 (1252)
. +|++ +++.+|+...||++.+++|+|++||++|+++|+++++++++++++.
T Consensus 621 ~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~ 696 (1394)
T TIGR00956 621 QYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGA 696 (1394)
T ss_pred ccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1 1112 3567888878999999999999999999999999999999998743
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-91 Score=917.62 Aligned_cols=566 Identities=25% Similarity=0.387 Sum_probs=483.9
Q ss_pred ccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-eEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 000853 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 676 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
++.+|+|||+.++|||+++|+||||||||||||+|+|+.++. ..+|+|.+||++......++.++|++|+|.+++.+||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 567999999999999999999999999999999999987642 3489999999987544446789999999999999999
Q ss_pred HHHHHHHHHccCCCC-------CCHHHH------------------------HHHHHHHHHHcCCcccccccccCCCCCC
Q 000853 755 EESVIFSAWLRLSPE-------IDLKTK------------------------AEFVNEVLQTIELDGIKYSLVGLPGVSG 803 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~-------~~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 803 (1252)
+|++.|+++++.... ...+++ +..++++++.+||.+++|+.+|+..+++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 999999987764211 111111 1235789999999999999999998999
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 804 lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .|+|||+++|||+.++++.||++++|.+ |+
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ 415 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQ 415 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ce
Confidence 999999999999999999999999999999999999999999999986 4899999999998889999999999975 89
Q ss_pred EEEecCCCCcchhHHHHHhhCCCcccCCCCCCcccceeeccCCcch-h-----------hcccchHHHhhhhhHHHHHHH
Q 000853 883 IIYSGPLGQHSCKVIDYFESIPGVLKIKDNYNPATWMLEVSSSSIE-T-----------ELGVDFGQIYRESTLHQENKE 950 (1252)
Q Consensus 883 ~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~s~~~~~~~~ 950 (1252)
++|+||+ +++.+||+++| .+||++.|||||++++++.... . ....++++.|++|+.+++..+
T Consensus 416 ivy~G~~----~~~~~yF~~lG--f~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~ 489 (1470)
T PLN03140 416 IVYQGPR----DHILEFFESCG--FKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLEN 489 (1470)
T ss_pred EEEeCCH----HHHHHHHHHcC--CCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHH
Confidence 9999997 57899999995 3799999999999999875322 1 112467888998887765543
Q ss_pred HhhhcCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcccCCCCccHHhHHh
Q 000853 951 LGKQLSSPSPGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGKKIKTQQEVFN 1030 (1252)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~ 1030 (1252)
.++...............++|..++|.|++.|++|+++.++|||.++..|+++.+++|+++|++||+++.+..+..+.+.
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~ 569 (1470)
T PLN03140 490 ELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGAL 569 (1470)
T ss_pred HHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHH
Confidence 33221101111111112346889999999999999999999999999999999999999999999999765444445667
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHH
Q 000853 1031 MFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYK 1110 (1252)
Q Consensus 1031 ~~g~lf~~~~~~~~~~~~~~~~~~~~er~~~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~y~~~gl~~~~~~ 1110 (1252)
+.|++||++++.++.++.+ ++.++.||+||+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++
T Consensus 570 ~~g~lff~~l~~~~~~~~~-l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~ 648 (1470)
T PLN03140 570 YIGALLFSMIINMFNGFAE-LALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASR 648 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhH
Confidence 8899999999888877655 577789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHh
Q 000853 1111 IFWSLHGTFCNLLYFNYMGMLMVSLTPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQ 1190 (1252)
Q Consensus 1111 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~~~ 1190 (1252)
||+|+++++++.++++++++++++++|++.+|+.+++++++++++|+||++|+++||+||+|++|+||++|+++|+++||
T Consensus 649 Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NE 728 (1470)
T PLN03140 649 FFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNE 728 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcce-ecccCCcccHHHHHhhhcCCccc--chhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000853 1191 YGDIEKE-ISAFGETKTVSGFLDDYFGFNHD--LLGVVGIVLLIFPIVFASLFAYFIGKLNF 1249 (1252)
Q Consensus 1191 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1249 (1252)
|.+.... +.+.+.+.+.|+.+++.+|+..+ +.|+++++|++|+++|+++++++|++++.
T Consensus 729 f~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 729 MFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred ccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9775432 22223233345555688999765 56999999999999999999999999873
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-84 Score=791.12 Aligned_cols=566 Identities=27% Similarity=0.450 Sum_probs=499.2
Q ss_pred ccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-eEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 000853 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 676 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
+.++|+|+|+.++||+++.++||+||||||||++|+|..... ...|+|.+||++.+....++.++|++|+|.|+|.+||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 457999999999999999999999999999999999976432 2367999999987654447889999999999999999
Q ss_pred HHHHHHHHHccCCCC----CCHHHHH-HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000853 755 EESVIFSAWLRLSPE----IDLKTKA-EFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 829 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~----~~~~~~~-~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDE 829 (1252)
+|+|.|+++++.+.. .++.++. +..+.+++.+||++++|+++|++..|++||||||||++|.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999987632 2222222 25678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCcchhHHHHHhhCCCccc
Q 000853 830 PTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFESIPGVLK 908 (1252)
Q Consensus 830 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~ 908 (1252)
+|+|||+.|+.++.+.|+++++. +.|++++.|||+.+++++||++++|.+ |+++|+||. +++.+||+++| ..
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~G--f~ 359 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMG--FK 359 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcC--cc
Confidence 99999999999999999999865 899999999999999999999999986 899999998 56899999985 47
Q ss_pred CCCCCCcccceeeccCCcchh-----------hcc-cchHHHhhhhhHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCchH
Q 000853 909 IKDNYNPATWMLEVSSSSIET-----------ELG-VDFGQIYRESTLHQENKELGKQLSSPSPGSKDLHFPTHFPQNGW 976 (1252)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1252)
||+..++|||..++++...+. ... .++++.|.+|+.+++.....+........++.....++|..|+|
T Consensus 360 cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~ 439 (1391)
T KOG0065|consen 360 CPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYW 439 (1391)
T ss_pred CCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHH
Confidence 999999999999998832211 112 47889999998887766544332222222333344567899999
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcccCCCCccHHhHHhHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 000853 977 EQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVAT 1056 (1252)
Q Consensus 977 ~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~ 1056 (1252)
.|++.|+.|.++.+.||..+...++++.+++|+++|++|++... .+..+.+.|.|++||++++.+++++.++ +...+
T Consensus 440 ~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~~ 516 (1391)
T KOG0065|consen 440 EQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTFQ 516 (1391)
T ss_pred HHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHHh
Confidence 99999999999999999999999999999999999999999873 4567789999999999999999988876 44557
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000853 1057 ERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLT 1136 (1252)
Q Consensus 1057 er~~~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 1136 (1252)
.||||+|||...+|+++||.++..+.++|+.++.+++|.+|+||++||.+++++||.++++++++..+++++++++++++
T Consensus 517 ~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~ 596 (1391)
T KOG0065|consen 517 RLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLS 596 (1391)
T ss_pred hcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCCcceecc----------------
Q 000853 1137 PNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISA---------------- 1200 (1252)
Q Consensus 1137 ~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~~~~~~~~~~~~~---------------- 1200 (1252)
+++..|++++++.+++..+++||+||.++||+||+|++|+||+.|++|++++|||++.+.+|.+
T Consensus 597 ~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~ 676 (1391)
T KOG0065|consen 597 RTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCA 676 (1391)
T ss_pred chHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccch
Confidence 9999999999999999999999999999999999999999999999999999999998877651
Q ss_pred -----cCCc-ccHHHHHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000853 1201 -----FGET-KTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQR 1251 (1252)
Q Consensus 1201 -----~~~~-~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~ 1251 (1252)
+|+. +.+.+|+..+|++++.|.|+++||++||.++|.++..+++.|+++-+
T Consensus 677 ~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~ 733 (1391)
T KOG0065|consen 677 ATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLK 733 (1391)
T ss_pred hhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 1111 34577788888899999999999999999999999999999998643
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-75 Score=720.57 Aligned_cols=750 Identities=21% Similarity=0.273 Sum_probs=411.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
.++|||||||||||++++|.++++|+ +|+|.+||.++++.+. +..+|.|.|+|++| +.||+|||.|+.
T Consensus 381 ~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvlF-~~tI~eNI~~G~----- 451 (1228)
T KOG0055|consen 381 TVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF-ATTIRENIRYGK----- 451 (1228)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhhh-cccHHHHHhcCC-----
Confidence 37999999999999999999999997 9999999999987654 56799999998766 579999999863
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
.....+++.++.|.++. .+.+ ..|+++.||.||+.+.. |||||||||+|||
T Consensus 452 --~dat~~~i~~a~k~ana-----------------------~~fi---~~lp~g~~T~vge~g~q-LSGGQKQRIAIAR 502 (1228)
T KOG0055|consen 452 --PDATREEIEEAAKAANA-----------------------HDFI---LKLPDGYDTLVGERGVQ-LSGGQKQRIAIAR 502 (1228)
T ss_pred --CcccHHHHHHHHHHccH-----------------------HHHH---HhhHHhhcccccCCCCC-CChHHHHHHHHHH
Confidence 12233444444443221 1222 34899999999994333 9999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHH
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFF 237 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f 237 (1252)
||+.+|+|||||||||+||+.+++.+++.|++..+ |+|+|+..|. -+..+.+|+|++|++|+|++.|+|+|+...
T Consensus 503 alv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTivVaHR--LStIrnaD~I~v~~~G~IvE~G~h~ELi~~- 577 (1228)
T KOG0055|consen 503 ALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIVVAHR--LSTIRNADKIAVMEEGKIVEQGTHDELIAL- 577 (1228)
T ss_pred HHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEEEeee--hhhhhccCEEEEEECCEEEEecCHHHHHhc-
Confidence 99999999999999999999999999999998764 5677665443 345666999999999999999999998752
Q ss_pred HhcCCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHH--HHhhc---cCCCcccccc
Q 000853 238 EDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEE--ELAHS---FNKSETHKKA 312 (1252)
Q Consensus 238 ~~~G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--~~~~~---~~~~~~~~~~ 312 (1252)
..-.++.+.........+.. +.+.. ..++.....+.+........ ..... ....+.....
T Consensus 578 ---------~G~Y~~lv~~Q~~~~~~~~~--~~~~~----~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 642 (1228)
T KOG0055|consen 578 ---------GGIYSSLVRLQELEKAAEDE--EEEES----LKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEP 642 (1228)
T ss_pred ---------cchHHHHHHHHhhhhhhhcc--ccccc----hhhhhhhccccccccccccCCccccccccccccccccccc
Confidence 01112222111100000000 00000 00000000000000000000 00000 0000000000
Q ss_pred cccccccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHH-------HHHHhhheeccc-cCCcchHh-HHHHHHHHHH
Q 000853 313 LSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVI-------IASITMTAFLRS-QLAVDVLH-ANAYLGALFY 383 (1252)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~-------~~~~~g~~f~~~-~~~~~~~~-~~~~~g~lf~ 383 (1252)
........++ +|-+...+..+..+.+..+..++ .+..++.++--. ..+.+... .......+|.
T Consensus 643 ~~~~~~~~s~--------~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~ 714 (1228)
T KOG0055|consen 643 VSEEDEKVSF--------WRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFL 714 (1228)
T ss_pred cccccccccH--------HHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 0000112223 33344444444433332222221 111222111000 11111111 1112222222
Q ss_pred HHHHHH--HhhHHHHHHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhc------------cCC
Q 000853 384 ALMILI--VNGFPELNMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYV------------IGY 449 (1252)
Q Consensus 384 ~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l------------~gl 449 (1252)
.+.... ....+.+.+......+- .++-...+..++...+.||- ...
T Consensus 715 ~l~~~~~i~~~~q~~~f~~~ge~Lt--------------------~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~D 774 (1228)
T KOG0055|consen 715 GLGIVSGITNFLQHYFFGIAGEKLT--------------------KRLRSMMFRALLRQEVGWFDDPENSGALSSRLATD 774 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcc
Confidence 211111 11111111111111111 22333334444444444432 222
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhC---HHHH
Q 000853 450 SPEVGRFFRQFLLLFTVHLTSISLFRAIASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVC---PLTY 526 (1252)
Q Consensus 450 ~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~is---p~~y 526 (1252)
.++.......-+..+...+++...+..++....| -+.+..+.+.+++.++++... +++.-.+ --.|
T Consensus 775 a~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W---~lalv~la~~Pll~~~~~~~~--------~~~~~~~~~~~~~~ 843 (1228)
T KOG0055|consen 775 ASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGW---RLALVVLATFPLLILSGYLQK--------KFLKGFSKDDKKAY 843 (1228)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH--------HHHhhhhHHHHHHH
Confidence 2222222222233333333222222222222111 111222333344444443321 0110000 0112
Q ss_pred HHHHHHHHhcCCCc---------------cccccCCcc--cccchhhhccCcccCCcchhHHHHHH--------------
Q 000853 527 GEIGLTVNEFLAPR---------------WEKITSGNT--TVGRQTLESRGLNFDSSFYWISIAAL-------------- 575 (1252)
Q Consensus 527 ~~~~l~~~e~~~~~---------------~~~~~~~~~--~~g~~~l~~~~~~~~~~~~w~~~~~l-------------- 575 (1252)
...+.+.+|...+- |........ ..-.......++.......+...++.
T Consensus 844 ~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~ 923 (1228)
T KOG0055|consen 844 EEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMT 923 (1228)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcC
Confidence 22222222222110 000000000 00000111111111111000000000
Q ss_pred -----HHHHHHHHHHHHHHHHhcCCCCCcccccchhcccccccccCCCCCCCCCcccccCCCCCCCCCCCCCccCCCCCc
Q 000853 576 -----IGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPL 650 (1252)
Q Consensus 576 -----~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (1252)
-.|.++......+.-.....|+..+...+..+.....++++..+.. ..++...+.-..
T Consensus 924 ~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~-----------------~~~~~~~~~~~G 986 (1228)
T KOG0055|consen 924 FEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPD-----------------STSGGKLPNVKG 986 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCC-----------------CCCCCcccccee
Confidence 0000011111111111122344444444444443333332211000 011112222344
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++||++.|+.++ +.++|+|+|++|++|+.+||+|||||||||.+.+|-..+. |..|.|.+||.++
T Consensus 987 ~I~~~~V~F~YPsRP----------~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~G~V~IDg~di 1054 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRP----------DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDAGKVKIDGVDI 1054 (1228)
T ss_pred EEEEeeeEeeCCCCC----------CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCccc
Confidence 699999999998653 5679999999999999999999999999999999999887 5699999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHH-------HcCCcccccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQ-------TIELDGIKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~-------~~~l~~~~~~~~g~~~ 800 (1252)
.. +.+|+++|.|.|+|.+| +-|++||+.|+. . +.+.++ +.++++ ..+|.+-.||.+|+.+
T Consensus 1055 k~lnl~~LR~~i~lVsQEP~LF-~~TIrENI~YG~--~---~vs~~e----Ii~Aak~ANaH~FI~sLP~GyDT~vGerG 1124 (1228)
T KOG0055|consen 1055 KDLNLKWLRKQIGLVSQEPVLF-NGTIRENIAYGS--E---EVSEEE----IIEAAKLANAHNFISSLPQGYDTRVGERG 1124 (1228)
T ss_pred ccCCHHHHHHhcceeccCchhh-cccHHHHHhccC--C---CCCHHH----HHHHHHHhhhHHHHhcCcCcccCccCccc
Confidence 54 45788999999999986 579999999981 1 133332 223333 2367788899999876
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
.+||||||||++||||+++||+||+|||.||+||+++++.++++|++... |+|.|+++|+++ ..+.+|.++|+. +
T Consensus 1125 -~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~-gRT~IvIAHRLS--TIqnaD~I~Vi~-~ 1199 (1228)
T KOG0055|consen 1125 -VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME-GRTTIVIAHRLS--TIQNADVIAVLK-N 1199 (1228)
T ss_pred -CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc-CCcEEEEecchh--hhhcCCEEEEEE-C
Confidence 58999999999999999999999999999999999999999999999864 899999999875 578999999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|+|++.|+.++
T Consensus 1200 G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1200 GKVVEQGTHDE 1210 (1228)
T ss_pred CEEEecccHHH
Confidence 99999999643
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-72 Score=688.00 Aligned_cols=545 Identities=30% Similarity=0.514 Sum_probs=453.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
++||||||||||||||++|+|+..+...++|+|.+||++.+....++.+|||+|+|.+++++||+|++.|.++++.+...
T Consensus 58 l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~ 137 (613)
T KOG0061|consen 58 LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSL 137 (613)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCC
Confidence 58999999999999999999999875578999999998887777888999999999999999999999999998865321
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
. +. +.+.++|+++++|||.+|+||+||+...||+||||||||+||..|+
T Consensus 138 ~-------~~------------------------~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell 186 (613)
T KOG0061|consen 138 S-------KE------------------------EKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELL 186 (613)
T ss_pred C-------HH------------------------HHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHH
Confidence 0 01 1235689999999999999999999888999999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHHHhc
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f~~~ 240 (1252)
.||+||+|||||||||+.++.++++.|+++|+. |+|+|+++|||+.+++++||++++|++|+++|+|+++++.+||+++
T Consensus 187 ~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~ 265 (613)
T KOG0061|consen 187 TDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSL 265 (613)
T ss_pred cCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhC
Confidence 999999999999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHhcCch--hhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCcccccccccccc
Q 000853 241 GFRCPERKGVADFLQEVISRK--DQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHKKALSFKKY 318 (1252)
Q Consensus 241 G~~~p~~~~~ad~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (1252)
|++||++.||+||+.++.+.. ..+... ........+.++......+..+........ .. ......
T Consensus 266 G~~~P~~~Npadf~l~l~s~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~ 332 (613)
T KOG0061|consen 266 GFPCPELENPADFLLDLLSVDSGTRELEE--------AVRIAKLINKFSQTDNLKKTLEALEKSLST----SK-KVEIGT 332 (613)
T ss_pred CCCCCCcCChHHHHHHHHccCCCchhHHh--------HHHHHHHhhhccccchhhhhHHHHhhhccc----cc-cccccc
Confidence 999999999999999987743 110000 000000000000000000000000000000 00 000011
Q ss_pred cccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHHHhhH-HHHH
Q 000853 319 SLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNGF-PELN 397 (1252)
Q Consensus 319 ~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~-~~~~ 397 (1252)
..++|.|+..+.+|.+....|++.....+.++..++++++|.+|++.+. +......+.|.+|+.+....+... ..+.
T Consensus 333 ~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~--~~~~~~~~~g~~~~~~~~~~f~~~~~~i~ 410 (613)
T KOG0061|consen 333 SPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN--DAKGIQNRLGLFFFILSFMTFLSMFGAVP 410 (613)
T ss_pred CCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 6789999999999999999999999999999999999999999997643 333444777888877776655444 4678
Q ss_pred HhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000853 398 MTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAI 477 (1252)
Q Consensus 398 ~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~~~~~~~i 477 (1252)
....++++|.||+..++|+.++|++++.+.++|+.++.+++|..++|||+|+.++..+|+.++++.+...+.+.+++.++
T Consensus 411 ~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i 490 (613)
T KOG0061|consen 411 VFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFI 490 (613)
T ss_pred HhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCccccccC---Ccccccch
Q 000853 478 ASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKITS---GNTTVGRQ 554 (1252)
Q Consensus 478 ~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~~~~~---~~~~~g~~ 554 (1252)
++++++...+..+++++...+++++||+++.+.+|.||+|+.|+|..+|++++++.|||.+....+... .+...+..
T Consensus 491 ~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 570 (613)
T KOG0061|consen 491 SAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGED 570 (613)
T ss_pred HHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHH
Confidence 999999999999999999999999999999999999999999999999999999999998633333221 23455666
Q ss_pred hhhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000853 555 TLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLK 594 (1252)
Q Consensus 555 ~l~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~ 594 (1252)
.+...++. ....|.++.++..+.++|.++.++++.+..
T Consensus 571 ~l~~~~~~--~~~~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 571 VLKQLGFE--DSSFWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred HHHhcCCc--ccccchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66666654 345799999999999999999999998754
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-70 Score=682.53 Aligned_cols=550 Identities=28% Similarity=0.466 Sum_probs=456.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
+++|+|||||||||||++|+|+.++....+|+|.+||.+++....++.++||+|+|.+++++||+|||.|+++++.+...
T Consensus 53 ~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 132 (617)
T TIGR00955 53 LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRV 132 (617)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCC
Confidence 58999999999999999999999875456899999999876545567899999999999999999999999877543211
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCc-ccccCccccchhHHHHHH
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPM-RRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~-~rgLSGGqkqRvsiA~al 159 (1252)
.. + +.+.+++++++.+||.+++||.||+.. .+||||||||||+||++|
T Consensus 133 ~~---~----------------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL 181 (617)
T TIGR00955 133 TK---K----------------------------EKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASEL 181 (617)
T ss_pred CH---H----------------------------HHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHH
Confidence 00 0 012246889999999999999999853 688999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHHHh
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFED 239 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f~~ 239 (1252)
+++|+|++|||||||||+.++.++++.|+++++ .|+|+|+++|||+.++++.||++++|++|+++++|+++++.+||++
T Consensus 182 ~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~ 260 (617)
T TIGR00955 182 LTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSD 260 (617)
T ss_pred HcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHH
Confidence 999999999999999999999999999999986 5899999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCc---ccccccccc
Q 000853 240 CGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSE---THKKALSFK 316 (1252)
Q Consensus 240 ~G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 316 (1252)
.|++||++.||+||+.++.+..+..+. ......++..+.++.+....+..+.......... .........
T Consensus 261 ~g~~~p~~~n~ad~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (617)
T TIGR00955 261 LGHPCPENYNPADFYVQVLAVIPGSEN-------ESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGI 333 (617)
T ss_pred cCCCCCCCCChHHHHHHHhhcCccccc-------chHHHHHHHHHHHhcchhhHHHHHHhhhhhcccccccccccccccc
Confidence 999999999999999988764322110 0011123334444444333322222111100000 000011223
Q ss_pred cccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHHHhh-HHH
Q 000853 317 KYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNG-FPE 395 (1252)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~-~~~ 395 (1252)
.+..+++.|+..+.+|.+...+|++..+..+.+..+++++++|.+|++.+. +....+.+.|.+|+.++...+.. ...
T Consensus 334 ~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~--~~~~~~~~~g~lf~~~~~~~f~~~~~~ 411 (617)
T TIGR00955 334 GYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL--TQKGVQNINGALFLFLTNMTFQNVFPV 411 (617)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999999999999999999999999999999999997543 34456677888888877666654 355
Q ss_pred HHHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 000853 396 LNMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFR 475 (1252)
Q Consensus 396 ~~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~~~~~~ 475 (1252)
......++++|+||+..++|++++|++++.+.++|..++.+++|..+.|||+|+.+++.+|+.++++.++..+++.+++.
T Consensus 412 ~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~ 491 (617)
T TIGR00955 412 INVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGY 491 (617)
T ss_pred HHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCcc-ccccCC----ccc
Q 000853 476 AIASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRW-EKITSG----NTT 550 (1252)
Q Consensus 476 ~i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~-~~~~~~----~~~ 550 (1252)
++++++++...+..++++++.++++++||+++...+|.||+|++|+||++|++++++.|||.+..+ +|...+ +..
T Consensus 492 ~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~ 571 (617)
T TIGR00955 492 LISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPS 571 (617)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999988765 332211 234
Q ss_pred ccchhhhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 000853 551 VGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFL 593 (1252)
Q Consensus 551 ~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~ 593 (1252)
.|..+++.+|++.. +.|.++++++++.++|.++.++++++.
T Consensus 572 ~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 572 SGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred ChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888887654 469999999999999999999998864
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-71 Score=695.21 Aligned_cols=718 Identities=20% Similarity=0.274 Sum_probs=407.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
++||+||.||||||||.+|.|+++.. +|+|.++| .++||+|+++ +.+.||||||.|+..
T Consensus 549 lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~pW-I~ngTvreNILFG~~------- 607 (1381)
T KOG0054|consen 549 LVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQPW-IQNGTVRENILFGSP------- 607 (1381)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEeccccH-hhCCcHHHhhhcCcc-------
Confidence 47999999999999999999999864 99999998 5899999655 567899999999742
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
.|.++|.+++.+|++++|... |+++..|.|||. +-+||||||||++||||+|
T Consensus 608 -------------------~d~~rY~~Vi~aC~L~~Dle~--------Lp~GD~TeIGEr-GinLSGGQKqRIsLARAVY 659 (1381)
T KOG0054|consen 608 -------------------YDEERYDKVIKACALKKDLEI--------LPFGDLTEIGER-GINLSGGQKQRISLARAVY 659 (1381)
T ss_pred -------------------ccHHHHHHHHHHccCHhHHhh--------cCCCCcceecCC-ccCCcHhHHHHHHHHHHHh
Confidence 366899999999999998776 999999999992 3348999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHHHhc
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f~~~ 240 (1252)
+++||++||+|.|++|+++.++|++..-... ..++|+|+.+| ..+.++.+|+|++|++|+|.+.|+++|+.+.-
T Consensus 660 ~~adIYLLDDplSAVDahvg~~if~~ci~~~-L~~KT~ILVTH--ql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~--- 733 (1381)
T KOG0054|consen 660 QDADIYLLDDPLSAVDAHVGKHIFEECIRGL-LRGKTVILVTH--QLQFLPHADQIIVLKDGKIVESGTYEELLKSG--- 733 (1381)
T ss_pred ccCCEEEEcCcchhhhHhhhHHHHHHHHHhh-hcCCEEEEEeC--chhhhhhCCEEEEecCCeEecccCHHHHHhcc---
Confidence 9999999999999999999999998654322 34688888776 45889999999999999999999999987411
Q ss_pred CCCCCCCCChhHHHHHhcCch--hhhhh--hccCCCCCCCCCHHHHHHHHHhChhhH--HHHHHHhhccCCCcccccccc
Q 000853 241 GFRCPERKGVADFLQEVISRK--DQEQY--WHRKDHPYGYVSIDQFITKFKTSHLGL--KLEEELAHSFNKSETHKKALS 314 (1252)
Q Consensus 241 G~~~p~~~~~ad~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~~ 314 (1252)
.+|. +..... +.+.. ....+.+......+............. ...++.......++...+...
T Consensus 734 ----------~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~ 802 (1381)
T KOG0054|consen 734 ----------GDFA-ELAHEEESEQEEEASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVS 802 (1381)
T ss_pred ----------hhHH-HHhhccchhhccccccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEee
Confidence 0111 000000 00000 000000000000000000000000000 000000000000000000000
Q ss_pred cccccccHHHHHHHHHHHHHHHhhcChhHHH-HHHHHHHHHHHHhhhe-eccccCCcch------HhHHHHHHHHHHHHH
Q 000853 315 FKKYSLTKWELLKACATREFLLMKRNSFIYV-FKSTQLVIIASITMTA-FLRSQLAVDV------LHANAYLGALFYALM 386 (1252)
Q Consensus 315 ~~~~~~~~~~~~~~l~~r~~~~~~r~~~~~~-~~~~~~~~~~~~~g~~-f~~~~~~~~~------~~~~~~~g~lf~~~~ 386 (1252)
.+ -++.++++. ....... ............++.- |+..+.+... .....+.+ + |+++
T Consensus 803 ~~----vY~~Y~~a~---------~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~-v-Y~~l 867 (1381)
T KOG0054|consen 803 WS----VYKKYIKAA---------GGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLG-V-YALL 867 (1381)
T ss_pred HH----HHHHHHHhc---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHH-H-HHHH
Confidence 00 011111110 0000000 0011111111112221 2211111110 01111111 1 1111
Q ss_pred HH---HHhhHHHHHHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHH--
Q 000853 387 IL---IVNGFPELNMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFL-- 461 (1252)
Q Consensus 387 ~~---~~~~~~~~~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l-- 461 (1252)
.. ++.....+.. ...--+..-.++-.++..++.+++.||-.. +.++++..+.
T Consensus 868 ~~~~~~~~~~rs~~~--------------------~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtT---P~GRILNRFSkD 924 (1381)
T KOG0054|consen 868 GVASSLLTLLRSFLF--------------------AKGGLKASRKLHDKLLNSILRAPMSFFDTT---PTGRILNRFSKD 924 (1381)
T ss_pred HHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHhCcchhcCCC---Cccchhhhcccc
Confidence 10 0000000000 001112233455566666666666666432 3333333331
Q ss_pred -HHH------HHHHHHH------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHH
Q 000853 462 -LLF------TVHLTSI------SLFRAIASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGE 528 (1252)
Q Consensus 462 -~~~------~~~~~~~------~~~~~i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~ 528 (1252)
..+ ....... +...+++...|.+.++.. .+.+++ |.-...|.-
T Consensus 925 ~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~------pl~v~~------------------~~~~~~Y~~ 980 (1381)
T KOG0054|consen 925 IDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAII------PLGVIY------------------YFVQRYYLA 980 (1381)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH------HHHHHH------------------HHHHHHHHH
Confidence 011 1111111 111111111111111111 111111 000111111
Q ss_pred HHHHHHhcCC----CccccccCCcccccchhhhccCc--------------------ccCCcchhHHHHHHH-HHHHHHH
Q 000853 529 IGLTVNEFLA----PRWEKITSGNTTVGRQTLESRGL--------------------NFDSSFYWISIAALI-GFTVLFN 583 (1252)
Q Consensus 529 ~~l~~~e~~~----~~~~~~~~~~~~~g~~~l~~~~~--------------------~~~~~~~w~~~~~l~-~~~~~~~ 583 (1252)
.+--.....+ +-+... +.+..|...+++++- .+..+..|.++..-+ +-.+++.
T Consensus 981 tsReLkRLesitRSPi~sh~--~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~ 1058 (1381)
T KOG0054|consen 981 TSRELKRLESITRSPIYSHF--SETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLI 1058 (1381)
T ss_pred HhHHHHHhhhcccchHHHhH--HHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 000000 012233333333321 111223355544321 1111111
Q ss_pred HHHHHHHHhc--CCCCC-------------------------cccccchhcccccccccCCCCCCCCCcccccCCCCCCC
Q 000853 584 VVFTLALTFL--KSPGK-------------------------SRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTA 636 (1252)
Q Consensus 584 ~~~~l~l~~~--~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1252)
+.....+... ..++. ...+.+++|+.++.+.+.+.+ ...+...+++.
T Consensus 1059 ~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p------~~~~~~~pp~~ 1132 (1381)
T KOG0054|consen 1059 AALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAP------LEIEESRPPPS 1132 (1381)
T ss_pred HHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCC------CCCcCCCCCCC
Confidence 1111111111 11222 233445555555444322200 00111114567
Q ss_pred CCCCCCccCCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC
Q 000853 637 GPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG 716 (1252)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~ 716 (1252)
||..| .++|+|++.+|... -..+|||||++|+|||++||+|++|||||||+++|.+...
T Consensus 1133 WP~~G---------~I~f~~~~~RYrp~-----------lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e- 1191 (1381)
T KOG0054|consen 1133 WPSKG---------EIEFEDLSLRYRPN-----------LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE- 1191 (1381)
T ss_pred CCCCC---------eEEEEEeEEEeCCC-----------CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC-
Confidence 88776 48999998877432 2469999999999999999999999999999999999876
Q ss_pred CeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccc
Q 000853 717 GIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY 793 (1252)
Q Consensus 717 ~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 793 (1252)
+.+|+|.|||.++.. ++.|++++.+||||.+|. -|+|.|| ++..+..++.++++|+..+|.+...
T Consensus 1192 -~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NL----------DPf~e~sD~~IW~ALe~~~Lk~~v~ 1259 (1381)
T KOG0054|consen 1192 -PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNL----------DPFDEYSDDEIWEALERCQLKDVVS 1259 (1381)
T ss_pred -ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceec-Ccccccc----------CcccccCHHHHHHHHHHhChHHHHh
Confidence 468999999999764 578999999999998864 4777776 3444556677999999998875543
Q ss_pred -------ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHH
Q 000853 794 -------SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSID 866 (1252)
Q Consensus 794 -------~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~ 866 (1252)
..+. +++.++|.||||.+|+||||+++++||+|||+|+++|++|...|+++||+-.+ ++|||++.|+.+
T Consensus 1260 ~~p~~Ld~~v~-egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~-- 1335 (1381)
T KOG0054|consen 1260 SLPGGLDSEVS-EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLN-- 1335 (1381)
T ss_pred hCCcCCCceec-CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccc--
Confidence 3332 34579999999999999999999999999999999999999999999999775 899999999975
Q ss_pred HHHHhcceeeeecCcEEEEecCCCCc
Q 000853 867 IFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 867 ~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
....+|+|+||++ |+++++|+|.+.
T Consensus 1336 TVmd~DrVlVld~-G~v~EfdsP~~L 1360 (1381)
T KOG0054|consen 1336 TVMDSDRVLVLDA-GRVVEFDSPAEL 1360 (1381)
T ss_pred hhhhcCeEEEeeC-CeEeecCChHHH
Confidence 4567999999985 999999998654
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-69 Score=667.27 Aligned_cols=546 Identities=23% Similarity=0.354 Sum_probs=433.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
+++|+|||||||||||++|+|+.+|+ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.+...
T Consensus 96 ~~aI~GpnGaGKSTLL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~ 173 (659)
T PLN03211 96 ILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSL 173 (659)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCC
Confidence 47999999999999999999998874 3589999999987543 234689999999999999999999998765422100
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
. ++ +.+.+++++++.+||+++.||.+|+...++|||||||||+||++|+
T Consensus 174 --~-~~----------------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~ 222 (659)
T PLN03211 174 --T-KQ----------------------------EKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 222 (659)
T ss_pred --C-HH----------------------------HHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHH
Confidence 0 00 0112357899999999999999998888999999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHHHhc
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f~~~ 240 (1252)
++|+||+|||||+|||+.++.++.+.|+++++ .|+|+++++|||+.++.+.||+|++|++|++++.|+++++.+||+++
T Consensus 223 ~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~ 301 (659)
T PLN03211 223 INPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESV 301 (659)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHC
Confidence 99999999999999999999999999999986 58999999999998999999999999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhh--ccCCCcc-----cccc-
Q 000853 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAH--SFNKSET-----HKKA- 312 (1252)
Q Consensus 241 G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~-----~~~~- 312 (1252)
||+||.+.||+||+.++.+...........+. ....+...+.|+... ..+....... ....... ....
T Consensus 302 G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (659)
T PLN03211 302 GFSPSFPMNPADFLLDLANGVCQTDGVSEREK---PNVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEH 377 (659)
T ss_pred CCCCCCCCCHHHHHHHHcCccccCCCcccccc---chHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhccccccc
Confidence 99999999999999999875432100000000 001122223332211 1110000000 0000000 0000
Q ss_pred -cccccccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHH-H
Q 000853 313 -LSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILI-V 390 (1252)
Q Consensus 313 -~~~~~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~-~ 390 (1252)
.....+..++|+|+..+.+|.+.. +|++.....+.++.+++++++|++|++.+ ..+.+.+.|++|+++++.. .
T Consensus 378 ~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~----~~~~~~r~g~lff~~~~~~~~ 452 (659)
T PLN03211 378 RSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD----FRDVQDRLGLLFFISIFWGVF 452 (659)
T ss_pred ccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHH
Confidence 011124467899999999999888 67777778999999999999999999653 3456788899998876654 4
Q ss_pred hhHHHHHHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHH
Q 000853 391 NGFPELNMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTS 470 (1252)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~ 470 (1252)
..+..+..++.++++|+|||..++|++++|++++.+.++|+.++.+++|..++|||+|+.+++++|+.++++.++..+++
T Consensus 453 ~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~ 532 (659)
T PLN03211 453 PSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVS 532 (659)
T ss_pred HHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 55677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCcc-----cccc
Q 000853 471 ISLFRAIASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRW-----EKIT 545 (1252)
Q Consensus 471 ~~~~~~i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~-----~~~~ 545 (1252)
.+++.++++++++...+..++++++.++++++||+++ .+|.||+|++|+||++|++++++.|||.+.+. +|..
T Consensus 533 ~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~ 610 (659)
T PLN03211 533 QGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSL 610 (659)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCC
Confidence 9999999999999999999999999999999999997 79999999999999999999999999976432 2321
Q ss_pred CCc-ccccchhhhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 000853 546 SGN-TTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFL 593 (1252)
Q Consensus 546 ~~~-~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~ 593 (1252)
... ...+..++....+. ....|.++.+++++.+++.++.+++++..
T Consensus 611 ~~~~~~~~c~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 611 PHGSDRASCKFVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred cccCCCCCCccchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 110 01111122222222 23578999999999999999999988754
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-69 Score=705.27 Aligned_cols=217 Identities=25% Similarity=0.402 Sum_probs=188.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++.+|+++.++. +++.+|+||||+|++||++||+||||||||||+|+|+|..+ +.+|+|.++|.++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 4889999877631 12569999999999999999999999999999999999887 4589999999986
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 731 VQ--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 731 ~~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
.. ...++.+|||||++.+++.+||+|++.+.++++.. ..++.++.++++++.++|.+..++.+ ++|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~---~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGV---PAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 23456799999999999999999999998877642 23344567889999999998887764 5899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
||||+||+||+.+|+||+|||||+|||+.+++.+++.|++++++|+|||+|||+++ ++...||++++|. +|+++..|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~-~G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMV-KGAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999975 6777899999997 599999999
Q ss_pred CC
Q 000853 889 LG 890 (1252)
Q Consensus 889 ~~ 890 (1252)
+.
T Consensus 2154 ~q 2155 (2272)
T TIGR01257 2154 IQ 2155 (2272)
T ss_pred HH
Confidence 74
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-67 Score=707.33 Aligned_cols=213 Identities=20% Similarity=0.284 Sum_probs=180.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++|+||+++|+. +.+.+|+|+||+|+|||++||+||||||||||+++|.|.++ +.+|+|.+||.++
T Consensus 1237 ~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~dI 1303 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCDI 1303 (1622)
T ss_pred cEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEec
Confidence 5899999998842 12359999999999999999999999999999999999887 4589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. .++|+.+++|||++.++.. |++|||.++. +.+ ++.++++++..++.+ ..|+.+|..
T Consensus 1304 ~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~- 1371 (1622)
T PLN03130 1304 SKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEA- 1371 (1622)
T ss_pred ccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCC-
Confidence 53 4678899999999988764 9999997531 122 345777788777643 346666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|+||+||||||+||+++...|++.|++..+ ++|||+++|+++ ....||++++|. +
T Consensus 1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~-~~TvI~IAHRL~--tI~~~DrIlVLd-~ 1447 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLN--TIIDCDRILVLD-A 1447 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEeCChH--HHHhCCEEEEEE-C
Confidence 368999999999999999999999999999999999999999999999864 899999999864 567899999997 5
Q ss_pred cEEEEecCCCCc
Q 000853 881 GRIIYSGPLGQH 892 (1252)
Q Consensus 881 G~~~~~g~~~~~ 892 (1252)
|++++.|++++.
T Consensus 1448 G~IvE~Gt~~eL 1459 (1622)
T PLN03130 1448 GRVVEFDTPENL 1459 (1622)
T ss_pred CEEEEeCCHHHH
Confidence 999999998654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-67 Score=703.60 Aligned_cols=212 Identities=19% Similarity=0.268 Sum_probs=179.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++|+|++++|+. +.+.+|+|+|++|+|||++||+||||||||||+++|.|..+ +.+|+|.+||.++
T Consensus 1234 ~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di 1300 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDV 1300 (1495)
T ss_pred cEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEEh
Confidence 5899999998842 12469999999999999999999999999999999999887 5589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. .++|+.++||||++.++. -|++|||.+.. +.+ ++.++++++..++.+ ..|+.+|..
T Consensus 1301 ~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~- 1368 (1495)
T PLN03232 1301 AKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG- 1368 (1495)
T ss_pred hhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC-
Confidence 53 567889999999998876 49999996431 122 345777888777754 345666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|+||+||||||+||+++++.|++.|++..+ ++|+|+++|+++ ....+|++++|+ +
T Consensus 1369 G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~-~~TvI~IAHRl~--ti~~~DrIlVL~-~ 1444 (1495)
T PLN03232 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFK-SCTMLVIAHRLN--TIIDCDKILVLS-S 1444 (1495)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEeCCHH--HHHhCCEEEEEE-C
Confidence 468999999999999999999999999999999999999999999999754 899999999864 567899999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|++++
T Consensus 1445 G~ivE~Gt~~e 1455 (1495)
T PLN03232 1445 GQVLEYDSPQE 1455 (1495)
T ss_pred CEEEEECCHHH
Confidence 99999999854
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-64 Score=678.03 Aligned_cols=213 Identities=19% Similarity=0.213 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++|+|++++|+.. ...+|+||||+|+|||++||+|+||||||||+++|.|.++ +.+|+|.+||.|+
T Consensus 1284 ~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI 1350 (1522)
T TIGR00957 1284 RVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNI 1350 (1522)
T ss_pred cEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEc
Confidence 58999999988532 2359999999999999999999999999999999999887 4589999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. ..+|+.+++|||++.++.. |++|||.... +.+ ++.++++++..++.+ ..|+.+|..
T Consensus 1351 ~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~- 1418 (1522)
T TIGR00957 1351 AKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG- 1418 (1522)
T ss_pred cccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC-
Confidence 54 4678899999999988765 9999996211 122 344777888887754 346666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|+||+||||||+||+++...|++.|++..+ ++|||+++|++ +....+|++++|+ +
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~-~~TvI~IAHRl--~ti~~~DrIlVld-~ 1494 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFE-DCTVLTIAHRL--NTIMDYTRVIVLD-K 1494 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCH--HHHHhCCEEEEEE-C
Confidence 468999999999999999999999999999999999999999999998754 89999999986 4567899999997 5
Q ss_pred cEEEEecCCCCc
Q 000853 881 GRIIYSGPLGQH 892 (1252)
Q Consensus 881 G~~~~~g~~~~~ 892 (1252)
|++++.|++++.
T Consensus 1495 G~IvE~G~~~eL 1506 (1522)
T TIGR00957 1495 GEVAEFGAPSNL 1506 (1522)
T ss_pred CEEEEECCHHHH
Confidence 999999998653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-64 Score=664.19 Aligned_cols=218 Identities=21% Similarity=0.336 Sum_probs=180.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-------------
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG------------- 717 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~------------- 717 (1252)
.++|+||+|.|+.. +++++|+|+||+|+||+++||+||||||||||+++|.|.+.+.
T Consensus 1165 ~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred eEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 59999999988532 1246999999999999999999999999999999999987751
Q ss_pred ---------------------------------------eEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCCHH
Q 000853 718 ---------------------------------------IIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNITVE 755 (1252)
Q Consensus 718 ---------------------------------------~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~~tv~ 755 (1252)
+.+|+|++||.++.. ..+|+.+|||+|++.+| +.|++
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIr 1313 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHH
Confidence 148999999998643 56788999999999886 68999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000853 756 ESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL-------DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 828 (1252)
Q Consensus 756 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlD 828 (1252)
|||.|+. ++.++ +.++++++..++ .+..|+.+|..+ .+||||||||++|||||+++|+||+||
T Consensus 1314 eNI~~g~-----~~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1314 ENIKFGK-----EDATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred HHHhcCC-----CCCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999862 22233 335666665554 445688888654 679999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCCHHHHHHhcceeeeecC---cE-EEEecCCCC
Q 000853 829 EPTSGLDARAAAIVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLILMKNG---GR-IIYSGPLGQ 891 (1252)
Q Consensus 829 EPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~---G~-~~~~g~~~~ 891 (1252)
||||+||+++++.|++.|+++. .+++|+|+++|++ +..+.+|++++|.++ |+ +++.|+.++
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~e 1449 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHEE 1449 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCHHH
Confidence 9999999999999999999986 3589999999986 457889999999862 77 458998644
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=575.12 Aligned_cols=460 Identities=27% Similarity=0.323 Sum_probs=346.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC-CceeEEEEECCccCCCccc-------cceEEEecccc--ccCCCCCHHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHS-LKVSGEVSYNGYRLDEFVP-------QKTSAYISQYD--LHIAEMTVRETIDF 70 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~-~~~~G~V~~~g~~~~~~~~-------~~~~~yv~Q~~--~~~~~lTV~e~l~f 70 (1252)
+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.++|++|++ .|-|-+||.+-|.=
T Consensus 37 ~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E 116 (539)
T COG1123 37 ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIRE 116 (539)
T ss_pred EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHH
Confidence 47999999999999999999999875 3468999999987644322 36799999986 46777899998875
Q ss_pred HHhccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCcccc
Q 000853 71 SARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQK 150 (1252)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqk 150 (1252)
..+.+.... .+ +...++.++|+..||++.... +.....||||||
T Consensus 117 ~~~~h~~~~----~~-----------------------------ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~r 160 (539)
T COG1123 117 ALRLHGKGS----RA-----------------------------EARKRAVELLEQVGLPDPERR---DRYPHQLSGGMR 160 (539)
T ss_pred HHHHhcccc----HH-----------------------------HHHHHHHHHHHHcCCCChhhh---ccCCcccCchHH
Confidence 544332110 00 112345778999999987655 233456999999
Q ss_pred chhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCc
Q 000853 151 KRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPR 230 (1252)
Q Consensus 151 qRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1252)
|||.||+||+.+|++|++||||++||+.++.+|.+.|+++.++.|.++ +.++|...-+.++||||+||.+|++++.|+.
T Consensus 161 QRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~-l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~ 239 (539)
T COG1123 161 QRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAV-LFITHDLGVVAELADRVVVMYKGEIVETGPT 239 (539)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEE-EEEcCCHHHHHHhcCeEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999999999998766555 4567778888899999999999999999998
Q ss_pred chHHHHHHhcCCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCcccc
Q 000853 231 SYICKFFEDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHK 310 (1252)
Q Consensus 231 ~~~~~~f~~~G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 310 (1252)
+++.+.+ .++
T Consensus 240 ~~i~~~p---------------------------------~hp------------------------------------- 249 (539)
T COG1123 240 EEILSNP---------------------------------QHP------------------------------------- 249 (539)
T ss_pred HHHHhcc---------------------------------CCc-------------------------------------
Confidence 7764310 000
Q ss_pred cccccccccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHHH
Q 000853 311 KALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIV 390 (1252)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~ 390 (1252)
|... + .
T Consensus 250 -------YT~~----L--------l------------------------------------------------------- 255 (539)
T COG1123 250 -------YTRG----L--------L------------------------------------------------------- 255 (539)
T ss_pred -------ccHH----H--------H-------------------------------------------------------
Confidence 0000 0 0
Q ss_pred hhHHHHHHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHH
Q 000853 391 NGFPELNMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTS 470 (1252)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~ 470 (1252)
.+
T Consensus 256 ~a------------------------------------------------------------------------------ 257 (539)
T COG1123 256 AA------------------------------------------------------------------------------ 257 (539)
T ss_pred hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCccccccCCccc
Q 000853 471 ISLFRAIASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKITSGNTT 550 (1252)
Q Consensus 471 ~~~~~~i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~~~~~~~~~ 550 (1252)
.|. ..
T Consensus 258 ----------------------------------------~p~-----------------------~~------------ 262 (539)
T COG1123 258 ----------------------------------------VPR-----------------------LG------------ 262 (539)
T ss_pred ----------------------------------------CCC-----------------------cc------------
Confidence 000 00
Q ss_pred ccchhhhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhcccccccccCCCCCCCCCcccccC
Q 000853 551 VGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDA 630 (1252)
Q Consensus 551 ~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1252)
.... ..... ..
T Consensus 263 --------------------------------------------------------------~~~~-----~~~~~--~~ 273 (539)
T COG1123 263 --------------------------------------------------------------DEKI-----IRLPR--RG 273 (539)
T ss_pred --------------------------------------------------------------cccc-----ccccc--cc
Confidence 0000 00000 00
Q ss_pred CCCCCCCCCCCCccCCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHH
Q 000853 631 PLKTTAGPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVL 710 (1252)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l 710 (1252)
+.. ...-++.+|++..+..+..+. ....+...+++||||++++||++||+|+||||||||.++|
T Consensus 274 -------~~~-------~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i 337 (539)
T COG1123 274 -------PLR-------AEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARIL 337 (539)
T ss_pred -------ccc-------cCceeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHH
Confidence 000 112477888887776543211 0012346799999999999999999999999999999999
Q ss_pred hcCCCCCeEEEEEEECCeeC--Cc---ccccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 000853 711 SGRKTGGIIEGDIRIGGYPK--VQ---HTFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVL 783 (1252)
Q Consensus 711 ~g~~~~~~~~G~i~~~g~~~--~~---~~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l 783 (1252)
+|+.+| .+|+|.++|.+. .. ...++.+-+++||+ .+.|.+||++.+.-....... ....++++++.+++
T Consensus 338 ~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll 413 (539)
T COG1123 338 AGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELL 413 (539)
T ss_pred hCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHH
Confidence 999884 689999999762 11 23456778888887 567999999999877654432 22456677899999
Q ss_pred HHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEec
Q 000853 784 QTIELDGI-KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIH 861 (1252)
Q Consensus 784 ~~~~l~~~-~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H 861 (1252)
+.++|... .+ ..+++||||||||++|||||+.+|++|++|||||.||+..+.++.+.|+++.++ |.|.|++||
T Consensus 414 ~~VgL~~~~l~-----ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISH 488 (539)
T COG1123 414 ELVGLPPEFLD-----RYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISH 488 (539)
T ss_pred HHcCCCHHHHh-----cCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeC
Confidence 99999852 33 346899999999999999999999999999999999999999999999999866 999999999
Q ss_pred CCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 862 QPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 862 ~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
|.+ -+...||++++|. +|++|+.||.+
T Consensus 489 Dl~-vV~~i~drv~vm~-~G~iVE~G~~~ 515 (539)
T COG1123 489 DLA-VVRYIADRVAVMY-DGRIVEEGPTE 515 (539)
T ss_pred CHH-HHHhhCceEEEEE-CCeEEEeCCHH
Confidence 975 3667789999997 59999999853
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-63 Score=660.34 Aligned_cols=213 Identities=23% Similarity=0.247 Sum_probs=180.6
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++|+||+++|+. +...+|+||||+|+|||++||+|+||||||||+++|.|.++ +.+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 36999999998843 12359999999999999999999999999999999999887 558999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000853 730 KVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-------KYSLVGLP 799 (1252)
Q Consensus 730 ~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~g~~ 799 (1252)
+.. .++|+.++||||++.++. -|++|||... .+.+ ++.++++++..++.+. .|+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~-gTIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFD-GTVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCcccc-ccHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 653 467889999999998876 4999999531 1222 3457888888887653 46667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee
Q 000853 800 GVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~-p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
..+||||||||++|||||+++ |+||+||||||+||+++.+.|++.|++..+ ++|||+++|++ +....||++++|.
T Consensus 1443 -G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~-~~TvI~IAHRl--~ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 -GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS-AYTVITIAHRL--HTVAQYDKIIVMD 1518 (1560)
T ss_pred -cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC-CCEEEEEeccH--HHHHhCCEEEEEE
Confidence 468999999999999999996 899999999999999999999999998754 79999999986 5678899999997
Q ss_pred cCcEEEEecCCCC
Q 000853 879 NGGRIIYSGPLGQ 891 (1252)
Q Consensus 879 ~~G~~~~~g~~~~ 891 (1252)
+|++++.|++++
T Consensus 1519 -~G~VvE~Gt~~e 1530 (1560)
T PTZ00243 1519 -HGAVAEMGSPRE 1530 (1560)
T ss_pred -CCEEEEECCHHH
Confidence 599999999754
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-62 Score=651.11 Aligned_cols=212 Identities=18% Similarity=0.260 Sum_probs=179.9
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++|+||+++|+.. .+.+|+||||+|+|||++||+|+||||||||+++|+|... .+|+|.+||.++
T Consensus 1217 ~I~f~nVs~~Y~~~-----------~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di 1282 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEA-----------GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSW 1282 (1490)
T ss_pred eEEEEEEEEEeCCC-----------CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEc
Confidence 58999999988531 2469999999999999999999999999999999999875 379999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. ..+|+.++|+||++.++.. |+||||.... .. .++.++++++.++|.+ ..|+.+|..
T Consensus 1283 ~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~- 1350 (1490)
T TIGR01271 1283 NSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG- 1350 (1490)
T ss_pred ccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CC----CHHHHHHHHHHCCCHHHHHhCccccccccccC-
Confidence 53 4578899999999988764 9999995321 11 2456888999888754 346666653
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|+||+||||||+||+.+...|++.|++..+ ++|||+++|++ +....||++++|. +
T Consensus 1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~-~~TvI~IaHRl--~ti~~~DrIlvL~-~ 1426 (1490)
T TIGR01271 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRV--EALLECQQFLVIE-G 1426 (1490)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCH--HHHHhCCEEEEEE-C
Confidence 468999999999999999999999999999999999999999999999764 79999999986 4567899999997 5
Q ss_pred cEEEEecCCCCc
Q 000853 881 GRIIYSGPLGQH 892 (1252)
Q Consensus 881 G~~~~~g~~~~~ 892 (1252)
|++++.|++.+.
T Consensus 1427 G~ivE~g~p~~L 1438 (1490)
T TIGR01271 1427 SSVKQYDSIQKL 1438 (1490)
T ss_pred CEEEEeCCHHHH
Confidence 999999998543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-63 Score=603.72 Aligned_cols=446 Identities=22% Similarity=0.335 Sum_probs=334.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP----QKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ ..+|+|.++|.++..... ++.++||+|++.+++.+||+||+.++.....
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 111 (506)
T PRK13549 33 IVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITP 111 (506)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccc
Confidence 47899999999999999999999861 138999999998754322 3568999999888999999999988643210
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
... .. .++ ...+++++++.+||++..++.+++ |||||||||+||
T Consensus 112 ~~~-~~-~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGqkqrv~la 155 (506)
T PRK13549 112 GGI-MD-YDA-----------------------------MYLRAQKLLAQLKLDINPATPVGN-----LGLGQQQLVEIA 155 (506)
T ss_pred cCC-cC-HHH-----------------------------HHHHHHHHHHHcCCCCCcccchhh-----CCHHHHHHHHHH
Confidence 000 00 000 012357789999998888888876 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKF 236 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~ 236 (1252)
+||+.+|+||||||||+|||+.++.++.+.|+++++ .+.++|++ +|...++...||+|++|++|++++.|+.++...
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~-tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~- 232 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYI-SHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE- 232 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCcHHHHHHhcCEEEEEECCEEeeecccccCCH-
Confidence 999999999999999999999999999999999864 46666654 566678888999999999999998885332100
Q ss_pred HHhcCCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCcccccccccc
Q 000853 237 FEDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHKKALSFK 316 (1252)
Q Consensus 237 f~~~G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1252)
....+.+
T Consensus 233 -------------------------------------------~~~~~~~------------------------------ 239 (506)
T PRK13549 233 -------------------------------------------DDIITMM------------------------------ 239 (506)
T ss_pred -------------------------------------------HHHHHHh------------------------------
Confidence 0000000
Q ss_pred cccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHHHhhHHHH
Q 000853 317 KYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNGFPEL 396 (1252)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~ 396 (1252)
. ..
T Consensus 240 ----------------------------------------------~--~~----------------------------- 242 (506)
T PRK13549 240 ----------------------------------------------V--GR----------------------------- 242 (506)
T ss_pred ----------------------------------------------h--Cc-----------------------------
Confidence 0 00
Q ss_pred HHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000853 397 NMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRA 476 (1252)
Q Consensus 397 ~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~~~~~~~ 476 (1252)
T Consensus 243 -------------------------------------------------------------------------------- 242 (506)
T PRK13549 243 -------------------------------------------------------------------------------- 242 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCccccccCCcccccchhh
Q 000853 477 IASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKITSGNTTVGRQTL 556 (1252)
Q Consensus 477 i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~~~~~~~~~~g~~~l 556 (1252)
. .
T Consensus 243 ------------------------------~---~--------------------------------------------- 244 (506)
T PRK13549 243 ------------------------------E---L--------------------------------------------- 244 (506)
T ss_pred ------------------------------C---c---------------------------------------------
Confidence 0 0
Q ss_pred hccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhcccccccccCCCCCCCCCcccccCCCCCCC
Q 000853 557 ESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTA 636 (1252)
Q Consensus 557 ~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1252)
.. .. + .. +
T Consensus 245 -------------------------------------------------~~-----~~----~----~~-----~----- 252 (506)
T PRK13549 245 -------------------------------------------------TA-----LY----P----RE-----P----- 252 (506)
T ss_pred -------------------------------------------------cc-----cc----c----cc-----c-----
Confidence 00 00 0 00 0
Q ss_pred CCCCCCccCCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC
Q 000853 637 GPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG 716 (1252)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~ 716 (1252)
+..+ ...++++|+++.++. .+++.+|+|+||+|++||++||+||||||||||+|+|+|..++
T Consensus 253 -~~~~-------~~~l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~ 314 (506)
T PRK13549 253 -HTIG-------EVILEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG 314 (506)
T ss_pred -cCCC-------CceEEEecCcccccc----------ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC
Confidence 0000 013667777654421 0124589999999999999999999999999999999998752
Q ss_pred CeEEEEEEECCeeCCcc----cccceEEEEccCC---CCCCCCCHHHHHHHHHHccCCC--CCCHHHHHHHHHHHHHHcC
Q 000853 717 GIIEGDIRIGGYPKVQH----TFARISGYCEQND---IHSPNITVEESVIFSAWLRLSP--EIDLKTKAEFVNEVLQTIE 787 (1252)
Q Consensus 717 ~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~~tv~e~l~~~~~l~~~~--~~~~~~~~~~~~~~l~~~~ 787 (1252)
+.+|+|.++|.++... ..++.++|++|++ .+++.+||.||+.+........ ....+..+++++++++.++
T Consensus 315 -~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 393 (506)
T PRK13549 315 -RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLK 393 (506)
T ss_pred -CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcC
Confidence 2589999999875421 2345689999995 3677899999998753211100 0122334466889999999
Q ss_pred Cc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHH
Q 000853 788 LD-GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSID 866 (1252)
Q Consensus 788 l~-~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~ 866 (1252)
+. +..++. +..|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ +
T Consensus 394 l~~~~~~~~-----~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~ 467 (506)
T PRK13549 394 VKTASPELA-----IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-E 467 (506)
T ss_pred ccCCCcccc-----cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-H
Confidence 96 455554 4689999999999999999999999999999999999999999999999888999999999975 5
Q ss_pred HHHHhcceeeeecCcEEEEecCCCCc
Q 000853 867 IFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 867 ~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
+.+.||++++|.+ |+++..|++++.
T Consensus 468 ~~~~~d~v~~l~~-G~i~~~~~~~~~ 492 (506)
T PRK13549 468 VLGLSDRVLVMHE-GKLKGDLINHNL 492 (506)
T ss_pred HHHhCCEEEEEEC-CEEEEEeccccC
Confidence 6778999999974 899999987654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=600.14 Aligned_cols=436 Identities=21% Similarity=0.325 Sum_probs=330.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV----PQKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++.....
T Consensus 32 ~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 108 (501)
T PRK10762 32 VMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVN 108 (501)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccccc
Confidence 47999999999999999999999987 999999998875322 13468999999889999999999988643210
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
...... .. +.+.+++++++.+||++..+..+++ |||||||||+||
T Consensus 109 ~~~~~~-~~-----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la 153 (501)
T PRK10762 109 RFGRID-WK-----------------------------KMYAEADKLLARLNLRFSSDKLVGE-----LSIGEQQMVEIA 153 (501)
T ss_pred ccCccC-HH-----------------------------HHHHHHHHHHHHcCCCCCccCchhh-----CCHHHHHHHHHH
Confidence 000000 00 0012356789999999888888877 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKF 236 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~ 236 (1252)
+||+.+|++|||||||+|||+.++.++.+.|+++.. .+.++|+ ++|...++...||+|++|++|+++..|+.+++..
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii-~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~- 230 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVY-ISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE- 230 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH-
Confidence 999999999999999999999999999999999865 4666655 4566678889999999999999998775332100
Q ss_pred HHhcCCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCcccccccccc
Q 000853 237 FEDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHKKALSFK 316 (1252)
Q Consensus 237 f~~~G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1252)
+...+.+
T Consensus 231 -------------------------------------------~~~~~~~------------------------------ 237 (501)
T PRK10762 231 -------------------------------------------DSLIEMM------------------------------ 237 (501)
T ss_pred -------------------------------------------HHHHHHh------------------------------
Confidence 0000000
Q ss_pred cccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHHHhhHHHH
Q 000853 317 KYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNGFPEL 396 (1252)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~ 396 (1252)
. .
T Consensus 238 ----------------------------------------------~--~------------------------------ 239 (501)
T PRK10762 238 ----------------------------------------------V--G------------------------------ 239 (501)
T ss_pred ----------------------------------------------c--C------------------------------
Confidence 0 0
Q ss_pred HHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000853 397 NMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRA 476 (1252)
Q Consensus 397 ~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~~~~~~~ 476 (1252)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T PRK10762 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCccccccCCcccccchhh
Q 000853 477 IASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKITSGNTTVGRQTL 556 (1252)
Q Consensus 477 i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~~~~~~~~~~g~~~l 556 (1252)
.
T Consensus 240 --------------------------------------------------------------~----------------- 240 (501)
T PRK10762 240 --------------------------------------------------------------R----------------- 240 (501)
T ss_pred --------------------------------------------------------------C-----------------
Confidence 0
Q ss_pred hccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhcccccccccCCCCCCCCCcccccCCCCCCC
Q 000853 557 ESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTA 636 (1252)
Q Consensus 557 ~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1252)
+.. ...+ .. +
T Consensus 241 --------------------------------------------------~~~---~~~~-------~~-----~----- 250 (501)
T PRK10762 241 --------------------------------------------------KLE---DQYP-------RL-----D----- 250 (501)
T ss_pred --------------------------------------------------Ccc---cccc-------cc-----c-----
Confidence 000 0000 00 0
Q ss_pred CCCCCCccCCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC
Q 000853 637 GPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG 716 (1252)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~ 716 (1252)
.+ . .+..++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|..+
T Consensus 251 ~~-~-------~~~~l~~~~l~~------------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~- 303 (501)
T PRK10762 251 KA-P-------GEVRLKVDNLSG------------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP- 303 (501)
T ss_pred cC-C-------CCcEEEEeCccc------------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-
Confidence 00 0 011356666541 26999999999999999999999999999999999876
Q ss_pred CeEEEEEEECCeeCCcc----cccceEEEEccCC---CCCCCCCHHHHHHHHHHccCC---CCCCHHHHHHHHHHHHHHc
Q 000853 717 GIIEGDIRIGGYPKVQH----TFARISGYCEQND---IHSPNITVEESVIFSAWLRLS---PEIDLKTKAEFVNEVLQTI 786 (1252)
Q Consensus 717 ~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~~tv~e~l~~~~~l~~~---~~~~~~~~~~~~~~~l~~~ 786 (1252)
+.+|+|.++|.++... ..++.+||++|++ .+++.+||.||+.+....... .....++.+++++++++.+
T Consensus 304 -p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 382 (501)
T PRK10762 304 -RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLF 382 (501)
T ss_pred -CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhc
Confidence 4589999999876421 2345689999996 467889999999875311100 0012233446688999999
Q ss_pred CCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCH
Q 000853 787 ELD-GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSI 865 (1252)
Q Consensus 787 ~l~-~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 865 (1252)
++. +..++. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++
T Consensus 383 ~l~~~~~~~~-----~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~- 456 (501)
T PRK10762 383 NIKTPSMEQA-----IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP- 456 (501)
T ss_pred CCCCCCccCc-----hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-
Confidence 995 555554 4689999999999999999999999999999999999999999999999877999999999975
Q ss_pred HHHHHhcceeeeecCcEEEEecCCCCc
Q 000853 866 DIFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 866 ~~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
++.+.||++++|. +|++++.|++++.
T Consensus 457 ~~~~~~d~v~~l~-~G~i~~~~~~~~~ 482 (501)
T PRK10762 457 EVLGMSDRILVMH-EGRISGEFTREQA 482 (501)
T ss_pred HHHhhCCEEEEEE-CCEEEEEeccccC
Confidence 5677899999997 5899999987653
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-62 Score=610.17 Aligned_cols=228 Identities=21% Similarity=0.231 Sum_probs=183.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++..... .....+.+.+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 313 ~L~~~~l~~~y~~~~~~--~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGL--LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCcc--ccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 48899998877421000 0000012469999999999999999999999999999999999887 4589999999876
Q ss_pred Ccc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000853 731 VQH------TFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGV 801 (1252)
Q Consensus 731 ~~~------~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 801 (1252)
... .+++.++|++|++ .+++.+||.|++.+....+. ....++.++++.++++.+||. +..++. +
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~ 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----P 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----c
Confidence 421 2456799999997 47888999999988654331 112334456788999999995 444544 5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
++|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||+++ .+...+|++++|. +
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~-~ 539 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMY-L 539 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 689999999999999999999999999999999999999999999999765 899999999975 5667899999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|++++
T Consensus 540 G~iv~~g~~~~ 550 (623)
T PRK10261 540 GQIVEIGPRRA 550 (623)
T ss_pred CEEEEecCHHH
Confidence 89999998754
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=600.87 Aligned_cols=443 Identities=19% Similarity=0.293 Sum_probs=330.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP----QKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... ++.++||+|++.+++.+||+||+.++.....
T Consensus 33 ~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (510)
T PRK09700 33 IHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTK 109 (510)
T ss_pred EEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccc
Confidence 47999999999999999999999887 9999999988754322 2468999999889999999999987532100
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
........ +.+ +.+.+++++++.+||.+..++.+++ |||||||||+||
T Consensus 110 ~~~~~~~~----------------~~~-----------~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgG~~qrv~ia 157 (510)
T PRK09700 110 KVCGVNII----------------DWR-----------EMRVRAAMMLLRVGLKVDLDEKVAN-----LSISHKQMLEIA 157 (510)
T ss_pred cccccccc----------------CHH-----------HHHHHHHHHHHHcCCCCCcccchhh-----CCHHHHHHHHHH
Confidence 00000000 000 0112357789999999888888876 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKF 236 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~ 236 (1252)
+||+.+|+||||||||+|||+.++.++.+.|+++++ .+.|+|+ ++|...++...||++++|++|++++.|+++++..
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiii-vsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~- 234 (510)
T PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVY-ISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN- 234 (510)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH-
Confidence 999999999999999999999999999999999875 4666655 4566778889999999999999998886433100
Q ss_pred HHhcCCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCcccccccccc
Q 000853 237 FEDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHKKALSFK 316 (1252)
Q Consensus 237 f~~~G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1252)
++..+ . .
T Consensus 235 -------------------------------------------~~~~~-------------~---~-------------- 241 (510)
T PRK09700 235 -------------------------------------------DDIVR-------------L---M-------------- 241 (510)
T ss_pred -------------------------------------------HHHHH-------------H---h--------------
Confidence 00000 0 0
Q ss_pred cccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHHHhhHHHH
Q 000853 317 KYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNGFPEL 396 (1252)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~ 396 (1252)
. .. .
T Consensus 242 ----------------------------------------------~--~~--~-------------------------- 245 (510)
T PRK09700 242 ----------------------------------------------V--GR--E-------------------------- 245 (510)
T ss_pred ----------------------------------------------c--CC--C--------------------------
Confidence 0 00 0
Q ss_pred HHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000853 397 NMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRA 476 (1252)
Q Consensus 397 ~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~~~~~~~ 476 (1252)
T Consensus 246 -------------------------------------------------------------------------------- 245 (510)
T PRK09700 246 -------------------------------------------------------------------------------- 245 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCccccccCCcccccchhh
Q 000853 477 IASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKITSGNTTVGRQTL 556 (1252)
Q Consensus 477 i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~~~~~~~~~~g~~~l 556 (1252)
.
T Consensus 246 ----------------------------------~--------------------------------------------- 246 (510)
T PRK09700 246 ----------------------------------L--------------------------------------------- 246 (510)
T ss_pred ----------------------------------c---------------------------------------------
Confidence 0
Q ss_pred hccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhcccccccccCCCCCCCCCcccccCCCCCCC
Q 000853 557 ESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTA 636 (1252)
Q Consensus 557 ~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1252)
.. ... .... .. .
T Consensus 247 ----------------------------------------------~~--~~~---~~~~-------~~----------~ 258 (510)
T PRK09700 247 ----------------------------------------------QN--RFN---AMKE-------NV----------S 258 (510)
T ss_pred ----------------------------------------------cc--ccc---cccc-------cc----------c
Confidence 00 000 0000 00 0
Q ss_pred CCCCCCccCCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC
Q 000853 637 GPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG 716 (1252)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~ 716 (1252)
.+ . .+..++++|+++.+ +.+|+|+||+|++||+++|+||||||||||+++|+|..+
T Consensus 259 ~~-~-------~~~~l~~~~l~~~~---------------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~- 314 (510)
T PRK09700 259 NL-A-------HETVFEVRNVTSRD---------------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK- 314 (510)
T ss_pred cC-C-------CCcEEEEeCccccC---------------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-
Confidence 00 0 01136777776421 138999999999999999999999999999999999876
Q ss_pred CeEEEEEEECCeeCCcc----cccceEEEEccC---CCCCCCCCHHHHHHHHHHcc---CCC--C-CCHHHHHHHHHHHH
Q 000853 717 GIIEGDIRIGGYPKVQH----TFARISGYCEQN---DIHSPNITVEESVIFSAWLR---LSP--E-IDLKTKAEFVNEVL 783 (1252)
Q Consensus 717 ~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~---~~~~~~~tv~e~l~~~~~l~---~~~--~-~~~~~~~~~~~~~l 783 (1252)
+.+|+|.++|.++... ..++.+||++|+ ..+++.+||.||+.+....+ ... . ...+..++++++++
T Consensus 315 -p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 393 (510)
T PRK09700 315 -RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQR 393 (510)
T ss_pred -CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHH
Confidence 4589999999875421 234568999998 35778899999998753211 000 0 11223335678999
Q ss_pred HHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Q 000853 784 QTIELD-GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQ 862 (1252)
Q Consensus 784 ~~~~l~-~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 862 (1252)
+.+++. +..++. +..|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||++||+
T Consensus 394 ~~~~l~~~~~~~~-----~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd 468 (510)
T PRK09700 394 ELLALKCHSVNQN-----ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSE 468 (510)
T ss_pred HhcCCCCCCccCc-----cccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 999996 566655 46899999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHHHhcceeeeecCcEEEEecCC
Q 000853 863 PSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 863 ~~~~~~~~~d~~~~l~~~G~~~~~g~~ 889 (1252)
++ ++...||++++|.+ |++++.++.
T Consensus 469 ~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 469 LP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred HH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 75 56778999999975 899988875
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-62 Score=599.51 Aligned_cols=218 Identities=22% Similarity=0.305 Sum_probs=176.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEEC-Cee
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIG-GYP 729 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~-g~~ 729 (1252)
.++++|+++.++.. ..+++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++ |.+
T Consensus 279 ~l~~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~ 348 (520)
T TIGR03269 279 IIKVRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDE 348 (520)
T ss_pred eEEEeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCc
Confidence 37788888766320 0112469999999999999999999999999999999999876 458999996 532
Q ss_pred ---CCc------ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-----ccccc
Q 000853 730 ---KVQ------HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-----IKYSL 795 (1252)
Q Consensus 730 ---~~~------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~ 795 (1252)
... ...++.+||++|++.+++.+||.||+.+...+. ...+..++++.++++.++|.+ ..++.
T Consensus 349 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 424 (520)
T TIGR03269 349 WVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY 424 (520)
T ss_pred cccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC
Confidence 111 123456899999988888999999998764321 122334466889999999975 23433
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcce
Q 000853 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDL 874 (1252)
Q Consensus 796 ~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~ 874 (1252)
+.+|||||||||+|||||+.+|++|||||||+|||+.+++.+++.|++++++ |.|||++||+++ .+.+.+|++
T Consensus 425 -----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i 498 (520)
T TIGR03269 425 -----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRA 498 (520)
T ss_pred -----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEE
Confidence 5689999999999999999999999999999999999999999999999765 899999999975 566789999
Q ss_pred eeeecCcEEEEecCC
Q 000853 875 ILMKNGGRIIYSGPL 889 (1252)
Q Consensus 875 ~~l~~~G~~~~~g~~ 889 (1252)
++|. +|++++.|++
T Consensus 499 ~~l~-~G~i~~~g~~ 512 (520)
T TIGR03269 499 ALMR-DGKIVKIGDP 512 (520)
T ss_pred EEEE-CCEEEEECCH
Confidence 9997 5899999876
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-62 Score=594.70 Aligned_cols=205 Identities=20% Similarity=0.237 Sum_probs=168.0
Q ss_pred cccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc----cccceEEEEccCC---CCCCC
Q 000853 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----TFARISGYCEQND---IHSPN 751 (1252)
Q Consensus 679 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 751 (1252)
+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++ .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 5899999999999999999999999999999999876 4589999999876432 1245689999984 47788
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000853 752 ITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 830 (1252)
Q Consensus 752 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEP 830 (1252)
+|+.|++......+..........++.++++++.+++. +..++. ++.|||||||||+||++|+.+|++||||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA-----ARTLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCc-----cccCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 99999986431111000011222345688999999996 556655 468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCc
Q 000853 831 TSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 831 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
|+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|. +|++++.|.+++.
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~-~G~i~~~~~~~~~ 490 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMH-QGEISGALTGAAI 490 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEEccccC
Confidence 9999999999999999999878999999999976 5777899999997 5899999987653
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-62 Score=596.86 Aligned_cols=203 Identities=23% Similarity=0.325 Sum_probs=169.6
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc------cccceEEEEccCC--CC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH------TFARISGYCEQND--IH 748 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~ 748 (1252)
+.+|+|+||+|++||++||+||||||||||+|+|+|..+ .+|+|.++|.++... .+++.++|++|++ .+
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 469999999999999999999999999999999999863 479999999875321 1345689999997 36
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000853 749 SPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 827 (1252)
Q Consensus 749 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illl 827 (1252)
++.+||.||+.+....+.. .....+.++++.++++.+++. +..+.. +.+|||||||||+|||+|+.+|++|||
T Consensus 376 ~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred CCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 7889999999987543211 122334456788999999996 345544 468999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 828 DEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 828 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
||||+|||+.+++.+++.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|+++
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 511 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDCE 511 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999999865 899999999975 46678999999974 8999999863
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-61 Score=590.09 Aligned_cols=222 Identities=18% Similarity=0.333 Sum_probs=177.4
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.+.. .+++.+|+|+||+|++||+++|+||||||||||+++|+|..++ +.+|+|.++|.++.
T Consensus 258 l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~ 326 (500)
T TIGR02633 258 LEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVD 326 (500)
T ss_pred EEEeCCcccccc----------cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECC
Confidence 677777654310 0124589999999999999999999999999999999998763 24899999998764
Q ss_pred c----ccccceEEEEccCC---CCCCCCCHHHHHHHHHH--ccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000853 732 Q----HTFARISGYCEQND---IHSPNITVEESVIFSAW--LRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGV 801 (1252)
Q Consensus 732 ~----~~~~~~~~~v~q~~---~~~~~~tv~e~l~~~~~--l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~ 801 (1252)
. ...++.+||++|++ .+++.+||+||+.+... ............++.++++++.+++.+ ..++. +
T Consensus 327 ~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 401 (500)
T TIGR02633 327 IRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-----I 401 (500)
T ss_pred CCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc-----c
Confidence 2 12356789999995 47888999999987531 111001122334466889999999964 44554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
..|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.||++++|. +|
T Consensus 402 ~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~-~G 479 (500)
T TIGR02633 402 GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIG-EG 479 (500)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CC
Confidence 689999999999999999999999999999999999999999999999888999999999975 5777899999997 48
Q ss_pred EEEEecCCCC
Q 000853 882 RIIYSGPLGQ 891 (1252)
Q Consensus 882 ~~~~~g~~~~ 891 (1252)
+++..++..+
T Consensus 480 ~i~~~~~~~~ 489 (500)
T TIGR02633 480 KLKGDFVNHA 489 (500)
T ss_pred EEEEEEcccc
Confidence 9998887543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-61 Score=590.21 Aligned_cols=206 Identities=21% Similarity=0.330 Sum_probs=170.8
Q ss_pred ccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc----ccccceEEEEccCC---CCCC
Q 000853 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ----HTFARISGYCEQND---IHSP 750 (1252)
Q Consensus 678 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~ 750 (1252)
.+++|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 38999999999999999999999999999999999876 458999999987532 12345789999996 3778
Q ss_pred CCCHHHHHHHHHHccCCC-C--CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 000853 751 NITVEESVIFSAWLRLSP-E--IDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 826 (1252)
Q Consensus 751 ~~tv~e~l~~~~~l~~~~-~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~ill 826 (1252)
.+|+.||+.+........ . ......++.++++++.+++. +..++. +..|||||||||+||++|+.+|++||
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQL-----IMNLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCc-----cccCCHHHHHHHHHHHHHccCCCEEE
Confidence 899999998753211100 0 11223345688999999994 556655 46899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCc
Q 000853 827 MDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 827 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
|||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.+|++++|. +|++++.|++++.
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~-~g~i~~~~~~~~~ 483 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMR-EGRIAGELAREQA 483 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEE-CCEEEEEEccccC
Confidence 99999999999999999999999888999999999975 5778899999997 5899999988654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-60 Score=579.21 Aligned_cols=437 Identities=17% Similarity=0.267 Sum_probs=325.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV----PQKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.++....
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~- 101 (491)
T PRK10982 26 IHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPT- 101 (491)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccccc-
Confidence 47999999999999999999999887 999999998875432 1356899999988899999999998753100
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
.+.... .++ ...+++++++.+|+.+..++.+++ |||||||||+||
T Consensus 102 ~~~~~~-~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~lA 146 (491)
T PRK10982 102 KGMFVD-QDK-----------------------------MYRDTKAIFDELDIDIDPRAKVAT-----LSVSQMQMIEIA 146 (491)
T ss_pred cccccC-HHH-----------------------------HHHHHHHHHHHcCCCCCccCchhh-----CCHHHHHHHHHH
Confidence 000000 000 012356788999998878888776 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKF 236 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~ 236 (1252)
+||+.+|++|||||||+|||+.++.++.+.|+++++ .+.++|++ +|...++...||+|++|++|+++..|+.++...
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~-tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~- 223 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYI-SHKMEEIFQLCDEITILRDGQWIATQPLAGLTM- 223 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE-ecCHHHHHHhCCEEEEEECCEEEeecChhhCCH-
Confidence 999999999999999999999999999999999865 46666554 566678889999999999999998875322100
Q ss_pred HHhcCCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCcccccccccc
Q 000853 237 FEDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHKKALSFK 316 (1252)
Q Consensus 237 f~~~G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1252)
++..+ ..
T Consensus 224 -------------------------------------------~~~~~-------------~~----------------- 230 (491)
T PRK10982 224 -------------------------------------------DKIIA-------------MM----------------- 230 (491)
T ss_pred -------------------------------------------HHHHH-------------HH-----------------
Confidence 00000 00
Q ss_pred cccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHHHhhHHHH
Q 000853 317 KYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNGFPEL 396 (1252)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~ 396 (1252)
. .
T Consensus 231 ----------------------------------------------~--~------------------------------ 232 (491)
T PRK10982 231 ----------------------------------------------V--G------------------------------ 232 (491)
T ss_pred ----------------------------------------------h--C------------------------------
Confidence 0 0
Q ss_pred HHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000853 397 NMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRA 476 (1252)
Q Consensus 397 ~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~~~~~~~ 476 (1252)
T Consensus 233 -------------------------------------------------------------------------------- 232 (491)
T PRK10982 233 -------------------------------------------------------------------------------- 232 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCccccccCCcccccchhh
Q 000853 477 IASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKITSGNTTVGRQTL 556 (1252)
Q Consensus 477 i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~~~~~~~~~~g~~~l 556 (1252)
. ..
T Consensus 233 -------------------------------~-~~--------------------------------------------- 235 (491)
T PRK10982 233 -------------------------------R-SL--------------------------------------------- 235 (491)
T ss_pred -------------------------------C-Cc---------------------------------------------
Confidence 0 00
Q ss_pred hccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhcccccccccCCCCCCCCCcccccCCCCCCC
Q 000853 557 ESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTA 636 (1252)
Q Consensus 557 ~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1252)
.. .. . ... .
T Consensus 236 -------------------------------------------------~~-----~~-~-------~~~---------~ 244 (491)
T PRK10982 236 -------------------------------------------------TQ-----RF-P-------DKE---------N 244 (491)
T ss_pred -------------------------------------------------cc-----cc-c-------ccc---------C
Confidence 00 00 0 000 0
Q ss_pred CCCCCCccCCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC
Q 000853 637 GPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG 716 (1252)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~ 716 (1252)
+ . .+..++++|+++. .+.+|+|+||++++||++||+||||||||||+++|+|..+
T Consensus 245 -~-~-------~~~~i~~~~l~~~---------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~- 299 (491)
T PRK10982 245 -K-P-------GEVILEVRNLTSL---------------RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE- 299 (491)
T ss_pred -C-C-------CCcEEEEeCcccc---------------cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc-
Confidence 0 0 0113677777653 1248999999999999999999999999999999999877
Q ss_pred CeEEEEEEECCeeCCcc----cccceEEEEccCCC---CCCCCCHHHHHHHHH--HccCCCC-CCHHHHHHHHHHHHHHc
Q 000853 717 GIIEGDIRIGGYPKVQH----TFARISGYCEQNDI---HSPNITVEESVIFSA--WLRLSPE-IDLKTKAEFVNEVLQTI 786 (1252)
Q Consensus 717 ~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~---~~~~~tv~e~l~~~~--~l~~~~~-~~~~~~~~~~~~~l~~~ 786 (1252)
+.+|+|.++|.++... ..++.++|++|++. +++.+|+.+|..+.. ....... ......++.+.++++.+
T Consensus 300 -p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 378 (491)
T PRK10982 300 -KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSM 378 (491)
T ss_pred -CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhc
Confidence 4589999999876432 12455899999853 567888877743221 0000001 11223345678899999
Q ss_pred CCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCH
Q 000853 787 ELD-GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSI 865 (1252)
Q Consensus 787 ~l~-~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 865 (1252)
++. +..++. +.+|||||||||+||++|+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++
T Consensus 379 ~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~- 452 (491)
T PRK10982 379 RVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP- 452 (491)
T ss_pred CccCCCcccc-----cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-
Confidence 985 344444 5689999999999999999999999999999999999999999999999888999999999975
Q ss_pred HHHHHhcceeeeecCcEEEEecCCCC
Q 000853 866 DIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 866 ~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
++...||++++|.+ |+++..++..+
T Consensus 453 ~~~~~~d~v~~l~~-g~i~~~~~~~~ 477 (491)
T PRK10982 453 ELLGITDRILVMSN-GLVAGIVDTKT 477 (491)
T ss_pred HHHhhCCEEEEEEC-CEEEEEEcccc
Confidence 57788999999974 89998876643
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-59 Score=571.68 Aligned_cols=215 Identities=19% Similarity=0.295 Sum_probs=166.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ ..+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 478899887652 24589999999999999999999999999999999997542 1489999999764
Q ss_pred Cc----ccccceEEEEccCCCCCC--CCCHHHHHHHHHHc--cCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000853 731 VQ----HTFARISGYCEQNDIHSP--NITVEESVIFSAWL--RLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGV 801 (1252)
Q Consensus 731 ~~----~~~~~~~~~v~q~~~~~~--~~tv~e~l~~~~~l--~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~ 801 (1252)
.. ...++.+||++|++.+++ ..|+++++.+.... ....... +..+++++++++.++|.+ ..++. +
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~ 399 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAP-----F 399 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCc-----h
Confidence 22 123567899999875543 35777776543210 0101111 223456889999999986 55554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEecCCCHHHHH-Hhcceeeeec
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETG-RTVVCTIHQPSIDIFE-AFDDLILMKN 879 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~-~~d~~~~l~~ 879 (1252)
.+|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++++ .|||++||+++ ++.+ .+|++++|.
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~- 477 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVP- 477 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEec-
Confidence 6899999999999999999999999999999999999999999999998765 47999999975 4545 468888886
Q ss_pred CcEEEEec
Q 000853 880 GGRIIYSG 887 (1252)
Q Consensus 880 ~G~~~~~g 887 (1252)
+|++++.-
T Consensus 478 ~G~i~~~~ 485 (490)
T PRK10938 478 DGDIYRYV 485 (490)
T ss_pred CCceEEee
Confidence 47877654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-57 Score=557.73 Aligned_cols=202 Identities=21% Similarity=0.305 Sum_probs=164.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.+++.
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET-- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 488999987652 2469999999999999999999999999999999999877 45899999542
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 000853 731 VQHTFARISGYCEQND-IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~-~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~lSgGq 808 (1252)
..+||++|++ .+++.+||.|++.+....+.. ... .+...++++.+++.+ ..+.. +.+|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKV---GNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhcccccc---ccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1589999996 677889999999886432211 111 123457899999964 34444 46899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEE-Eec
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRII-YSG 887 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~g 887 (1252)
||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .|||++||+++ .+...||++++|.++|++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---GCAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---CeEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 48999999975 5667899999997667776 555
Q ss_pred CC
Q 000853 888 PL 889 (1252)
Q Consensus 888 ~~ 889 (1252)
+.
T Consensus 527 ~~ 528 (556)
T PRK11819 527 NF 528 (556)
T ss_pred CH
Confidence 53
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-56 Score=482.73 Aligned_cols=229 Identities=26% Similarity=0.367 Sum_probs=190.2
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
+.++.+|++..++.+..+-.. ......++++||+++++||.+||+|.||||||||-.+|.++.++ +|+|.++|.+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~ 349 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQD 349 (534)
T ss_pred ceEEecceEEEEecCCccccc--cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCcc
Confidence 346777777666654322111 12235699999999999999999999999999999999998763 5999999998
Q ss_pred CCc------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000853 730 KVQ------HTFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801 (1252)
Q Consensus 730 ~~~------~~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 801 (1252)
+.. ...|+.+-.|+||| .+.|.+||.|-+.-+.....+ ..+..++++++.++|+.+||+..... ..+
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~----RYP 424 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRN----RYP 424 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhh----cCC
Confidence 753 23577889999998 467899999999888766643 56788899999999999999865322 236
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
+++|||||||++||||++.+|++++||||||.||-.-+.+|+++|+++.++ |.+-+++|||.. -+-.+||+++||. +
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~-~ 502 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMR-D 502 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEe-C
Confidence 899999999999999999999999999999999999999999999999754 999999999974 3567789999997 5
Q ss_pred cEEEEecCCC
Q 000853 881 GRIIYSGPLG 890 (1252)
Q Consensus 881 G~~~~~g~~~ 890 (1252)
|+||+.||.+
T Consensus 503 GkiVE~G~~~ 512 (534)
T COG4172 503 GKIVEQGPTE 512 (534)
T ss_pred CEEeeeCCHH
Confidence 9999999974
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-56 Score=551.58 Aligned_cols=198 Identities=20% Similarity=0.273 Sum_probs=164.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 588999988663 2458999999999999999999999999999999999876 45899999874
Q ss_pred CcccccceEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHH
Q 000853 731 VQHTFARISGYCEQNDI--HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~lSgG 807 (1252)
+.+||++|++. +.+.+|++|++.+.. . .. ..+++++++++.+++. +..+.. +.+||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~-~~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---Q-EG----DDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---c-CC----ccHHHHHHHHHHcCCChhHhcCc-----ccccCHH
Confidence 36899999864 456799999986421 1 11 1134578899999984 455544 4689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEE-Ee
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRII-YS 886 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~ 886 (1252)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++||+++ .+...+|++++|.+ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999986 459999999975 56677899999975 7776 77
Q ss_pred cCC
Q 000853 887 GPL 889 (1252)
Q Consensus 887 g~~ 889 (1252)
|++
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 875
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-56 Score=550.33 Aligned_cols=201 Identities=21% Similarity=0.301 Sum_probs=163.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.+++.
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--
Confidence 488899987652 2469999999999999999999999999999999999876 45899999542
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 000853 731 VQHTFARISGYCEQND-IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~-~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~lSgGq 808 (1252)
..+||++|++ .+++.+||.|++.+....... ... +....++++.+++.+ ..+.. +..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQL---GKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhcccccc---Ccc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1589999996 477889999999886432211 111 123557899999964 34444 46899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEE-Eec
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRII-YSG 887 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~g 887 (1252)
||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||++||+++ .+...+|++++|.++|++. +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 48999999975 4667789999997656766 555
Q ss_pred C
Q 000853 888 P 888 (1252)
Q Consensus 888 ~ 888 (1252)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 5
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-55 Score=537.25 Aligned_cols=211 Identities=20% Similarity=0.241 Sum_probs=173.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ + ..|+++||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++ .
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~-~-- 400 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE-L-- 400 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe-e--
Confidence 478888887552 1 24889999999999999999999999999999999887 458999986 1
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
.++|++|+..+.+.+||+|++.+..... .. ...+.++++.+++.+..++. +.+|||||||
T Consensus 401 -------~i~y~~Q~~~~~~~~tv~e~l~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~-----~~~LSGGe~Q 460 (590)
T PRK13409 401 -------KISYKPQYIKPDYDGTVEDLLRSITDDL-----GS---SYYKSEIIKPLQLERLLDKN-----VKDLSGGELQ 460 (590)
T ss_pred -------eEEEecccccCCCCCcHHHHHHHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCC-----cccCCHHHHH
Confidence 4799999988788999999998753211 11 12467899999998766655 4689999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCC
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 889 (1252)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++|||++ .+...+|++++|. |++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--Ccceeeeec
Confidence 999999999999999999999999999999999999999764 899999999975 4667789999884 477777764
Q ss_pred CCc---chhHHHHHhhC
Q 000853 890 GQH---SCKVIDYFESI 903 (1252)
Q Consensus 890 ~~~---~~~~~~~f~~~ 903 (1252)
.+- ...+..|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 432 23456777776
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=540.10 Aligned_cols=198 Identities=24% Similarity=0.372 Sum_probs=161.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 488999987663 3469999999999999999999999999999999999876 45899999742
Q ss_pred CcccccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHH
Q 000853 731 VQHTFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~lSgG 807 (1252)
..+||++|+. .+.+..|+.+++.- .. . ....+.+.++++.+++.+ ..++. ++.||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~--~----~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---LA--P----QELEQKLRDYLGGFGFQGDKVTEE-----TRRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---hC--c----hhhHHHHHHHHHHcCCChhHhcCc-----hhhCCHH
Confidence 2579999974 34456677776531 11 1 112356788999999963 44544 4689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEE-Ee
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRII-YS 886 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~ 886 (1252)
|||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||+. .+...||++++|.+ |+++ +.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EGALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 349999999975 46678999999974 7886 88
Q ss_pred cCCC
Q 000853 887 GPLG 890 (1252)
Q Consensus 887 g~~~ 890 (1252)
|+..
T Consensus 510 g~~~ 513 (638)
T PRK10636 510 GDLE 513 (638)
T ss_pred CCHH
Confidence 8763
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-54 Score=536.23 Aligned_cols=202 Identities=24% Similarity=0.361 Sum_probs=162.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++|+++||+|||||||||||++|+|..+ +.+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 488899987653 2469999999999999999999999999999999999876 45899998 4321
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHH
Q 000853 731 VQHTFARISGYCEQND-IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~-~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~lSgGq 808 (1252)
.+||++|+. .+++.+||.|++.+..... ... .....+.++++.+++. +..++. ++.|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTP-----VKALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhCh-----hhhCCHHH
Confidence 589999985 5778899999998753211 011 1133577889999985 344544 46899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEE-EEec
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI-IYSG 887 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~-~~~g 887 (1252)
||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.+ .+...+|+++++.++|++ .|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999886 459999999965 466789999999734665 4556
Q ss_pred CC
Q 000853 888 PL 889 (1252)
Q Consensus 888 ~~ 889 (1252)
+.
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 54
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-53 Score=501.68 Aligned_cols=199 Identities=27% Similarity=0.364 Sum_probs=159.6
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++++|+++.++. ++.+++++||.|.+|+.+||+||||+|||||||+|+|... +.+|+|.+.-.-
T Consensus 320 ~vl~~~~~~~~y~~------------~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~~v 385 (530)
T COG0488 320 LVLEFENVSKGYDG------------GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGETV 385 (530)
T ss_pred eeEEEeccccccCC------------CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCCce
Confidence 45888998876532 2579999999999999999999999999999999999776 348999876432
Q ss_pred CCcccccceEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 730 KVQHTFARISGYCEQND-IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 730 ~~~~~~~~~~~~v~q~~-~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
.+||..|+. .+.+..|+.|++.-.. ++.. +..+...|..+++....-. ..++.|||||
T Consensus 386 --------~igyf~Q~~~~l~~~~t~~d~l~~~~-----~~~~----e~~~r~~L~~f~F~~~~~~----~~v~~LSGGE 444 (530)
T COG0488 386 --------KIGYFDQHRDELDPDKTVLEELSEGF-----PDGD----EQEVRAYLGRFGFTGEDQE----KPVGVLSGGE 444 (530)
T ss_pred --------EEEEEEehhhhcCccCcHHHHHHhhC-----cccc----HHHHHHHHHHcCCChHHHh----CchhhcCHhH
Confidence 579999996 3347789999886321 1111 4558889999999765322 1256899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|.||.+|+.++.+|.+|+|||||++||..+...+.+.|.+. ..|||+||||.. -+-..+++++.+.+ +-..+.|.
T Consensus 445 k~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~~g~ 519 (530)
T COG0488 445 KARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVED-KVEEFEGG 519 (530)
T ss_pred HHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEcC-ceeEcCCC
Confidence 99999999999999999999999999999999999999986 579999999975 36677888888864 43444465
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=482.76 Aligned_cols=438 Identities=23% Similarity=0.364 Sum_probs=333.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcccc----ceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ----KTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~----~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+|.||||||||+|+|+|.++|+ +|+|.++|++.....++ .-++.|.|+..+.|++||.|||.++...+.
T Consensus 36 V~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~ 112 (500)
T COG1129 36 VHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTR 112 (500)
T ss_pred EEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhccccccc
Confidence 47999999999999999999999998 99999999988755543 458899999999999999999987754322
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
. .-.. |.++. ..++.++|+.+|+....+++||+ ||+||||-|.||
T Consensus 113 ~---~g~i----------------d~~~m-----------~~~A~~~l~~lg~~~~~~~~v~~-----LsiaqrQ~VeIA 157 (500)
T COG1129 113 R---FGLI----------------DRKAM-----------RRRARELLARLGLDIDPDTLVGD-----LSIAQRQMVEIA 157 (500)
T ss_pred C---CCcc----------------CHHHH-----------HHHHHHHHHHcCCCCChhhhhhh-----CCHHHHHHHHHH
Confidence 1 0000 11111 22357789999997668999988 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCc-chHHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPR-SYICK 235 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~-~~~~~ 235 (1252)
||+..+++|++||||||+|+......+++.++++.. .|.+ ++.+.|...|+++.||||.||.+|+.+..++. .+.
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~-ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~-- 233 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QGVA-IIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET-- 233 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCE-EEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCC--
Confidence 999999999999999999999999999999999974 4544 45577899999999999999999999876641 110
Q ss_pred HHHhcCCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCccccccccc
Q 000853 236 FFEDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHKKALSF 315 (1252)
Q Consensus 236 ~f~~~G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (1252)
+.++..+
T Consensus 234 ------------------------------------------~~~~lv~------------------------------- 240 (500)
T COG1129 234 ------------------------------------------SEDELVR------------------------------- 240 (500)
T ss_pred ------------------------------------------CHHHHHH-------------------------------
Confidence 0000000
Q ss_pred ccccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHHHhhHHH
Q 000853 316 KKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNGFPE 395 (1252)
Q Consensus 316 ~~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~ 395 (1252)
T Consensus 241 -------------------------------------------------------------------------------- 240 (500)
T COG1129 241 -------------------------------------------------------------------------------- 240 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 000853 396 LNMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFR 475 (1252)
Q Consensus 396 ~~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~~~~~~ 475 (1252)
.|+|-.
T Consensus 241 -------------------------------------------------~MvGr~------------------------- 246 (500)
T COG1129 241 -------------------------------------------------LMVGRE------------------------- 246 (500)
T ss_pred -------------------------------------------------HhhCcc-------------------------
Confidence 000000
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCccccccCCcccccchh
Q 000853 476 AIASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKITSGNTTVGRQT 555 (1252)
Q Consensus 476 ~i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~~~~~~~~~~g~~~ 555 (1252)
T Consensus 247 -------------------------------------------------------------------------------- 246 (500)
T COG1129 247 -------------------------------------------------------------------------------- 246 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhcccccccccCCCCCCCCCcccccCCCCCC
Q 000853 556 LESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTT 635 (1252)
Q Consensus 556 l~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1252)
.... . +. .
T Consensus 247 -------------------------------------------------------~~~~----------~-----~~-~- 254 (500)
T COG1129 247 -------------------------------------------------------LEDL----------F-----PE-P- 254 (500)
T ss_pred -------------------------------------------------------hhhh----------c-----cc-c-
Confidence 0000 0 00 0
Q ss_pred CCCCCCCccCCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC
Q 000853 636 AGPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT 715 (1252)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~ 715 (1252)
..+ ...+..++++|++. ...++|+||++++||++||-|-=|||+|-|+++|.|..+
T Consensus 255 ~~~-------~~~~~~l~v~~l~~-----------------~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~ 310 (500)
T COG1129 255 PEE-------GIGEPVLEVRNLSG-----------------GGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP 310 (500)
T ss_pred ccc-------CCCCcEEEEecCCC-----------------CCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc
Confidence 000 00122355665542 114679999999999999999999999999999999655
Q ss_pred CCeEEEEEEECCeeCCcc----cccceEEEEccCC---CCCCCCCHHHHHHHHHHccCCC--CCCHHHHHHHHHHHHHHc
Q 000853 716 GGIIEGDIRIGGYPKVQH----TFARISGYCEQND---IHSPNITVEESVIFSAWLRLSP--EIDLKTKAEFVNEVLQTI 786 (1252)
Q Consensus 716 ~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~~tv~e~l~~~~~l~~~~--~~~~~~~~~~~~~~l~~~ 786 (1252)
..+|+|.+||+++... ..+.-++|||.|. -++..+++.+|+.++...+... -.+....++.+++..+.+
T Consensus 311 --~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l 388 (500)
T COG1129 311 --ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRL 388 (500)
T ss_pred --CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhc
Confidence 4589999999986543 3455789999885 4678999999999883222111 234455566788899998
Q ss_pred CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHH
Q 000853 787 ELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSID 866 (1252)
Q Consensus 787 ~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~ 866 (1252)
++.-..- +..+.+||||++|||.|||.|..+|++|||||||.|+|..++.+|.++|++++++|++||++|-+.. |
T Consensus 389 ~Ik~~s~----~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-E 463 (500)
T COG1129 389 RIKTPSP----EQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-E 463 (500)
T ss_pred CcccCCc----cchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-H
Confidence 8753321 1225689999999999999999999999999999999999999999999999999999999999975 8
Q ss_pred HHHHhcceeeeecCcEEEEecCCCC
Q 000853 867 IFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 867 ~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
+...|||+++|.+ |+++..=+.++
T Consensus 464 ll~~~DRIlVm~~-Gri~~e~~~~~ 487 (500)
T COG1129 464 LLGLSDRILVMRE-GRIVGELDREE 487 (500)
T ss_pred HHhhCCEEEEEEC-CEEEEEecccc
Confidence 9999999999985 89987655443
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=509.18 Aligned_cols=200 Identities=18% Similarity=0.299 Sum_probs=158.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~~------------~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYPG------------GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeCC------------CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 5889999887631 2358999999999999999999999999999999999877 45899998752
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHH
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~lSgGqr 809 (1252)
..+||++|++. ..+++.++..+......+ ... ++.+.++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHHV--DGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEecccc--ccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 35899999852 345666654322111111 111 245788999999974 34433 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEE-EecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRII-YSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~g~ 888 (1252)
|||+||++|+.+|++|||||||+|||+.+...+.+.|++. +.|||++||+++ .+...||++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QGGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999999888775 349999999975 46677899999974 8887 7776
Q ss_pred C
Q 000853 889 L 889 (1252)
Q Consensus 889 ~ 889 (1252)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 5
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=442.93 Aligned_cols=442 Identities=20% Similarity=0.322 Sum_probs=340.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcccc----ceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ----KTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~----~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+.+|+|.||||||||+++|.|.++|+ +|+|.++|+++.-..++ .-+|.|.||..+++++||.|||..+..-..
T Consensus 32 IHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~ 108 (501)
T COG3845 32 IHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSK 108 (501)
T ss_pred EEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccc
Confidence 46899999999999999999999998 99999999988655543 458999999999999999999998753210
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
.. .. +.+ +.+.+++++.+.+||+-..|..|++ ||-||||||.|-
T Consensus 109 ~~-~~-------------------~~~-----------~~~~~i~~l~~~yGl~vdp~~~V~d-----LsVG~qQRVEIl 152 (501)
T COG3845 109 GG-LI-------------------DRR-----------QARARIKELSERYGLPVDPDAKVAD-----LSVGEQQRVEIL 152 (501)
T ss_pred cc-cc-------------------CHH-----------HHHHHHHHHHHHhCCCCCccceeec-----CCcchhHHHHHH
Confidence 00 00 000 0123467889999999999999998 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKF 236 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~ 236 (1252)
++|+.+|++|||||||+-|-|....++++.|+++++ .|+++|. ++|...|+.+.|||+.||.+|+++-.-+ ..
T Consensus 153 KaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~-ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~--~~--- 225 (501)
T COG3845 153 KALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIF-ITHKLKEVMAIADRVTVLRRGKVVGTVD--PV--- 225 (501)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEE-EeccHHHHHHhhCeeEEEeCCeEEeeec--CC---
Confidence 999999999999999999999999999999999986 5666654 6788999999999999999999753321 00
Q ss_pred HHhcCCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCcccccccccc
Q 000853 237 FEDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHKKALSFK 316 (1252)
Q Consensus 237 f~~~G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1252)
...+.++..+
T Consensus 226 --------------------------------------~~~t~~ela~-------------------------------- 235 (501)
T COG3845 226 --------------------------------------AETTEEELAE-------------------------------- 235 (501)
T ss_pred --------------------------------------CCCCHHHHHH--------------------------------
Confidence 0000000000
Q ss_pred cccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHHHhhHHHH
Q 000853 317 KYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNGFPEL 396 (1252)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~ 396 (1252)
T Consensus 236 -------------------------------------------------------------------------------- 235 (501)
T COG3845 236 -------------------------------------------------------------------------------- 235 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000853 397 NMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRA 476 (1252)
Q Consensus 397 ~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~~~~~~~ 476 (1252)
.|+|-.
T Consensus 236 ------------------------------------------------lMvG~~-------------------------- 241 (501)
T COG3845 236 ------------------------------------------------LMVGRE-------------------------- 241 (501)
T ss_pred ------------------------------------------------HhcCCc--------------------------
Confidence 000000
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCccccccCCcccccchhh
Q 000853 477 IASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKITSGNTTVGRQTL 556 (1252)
Q Consensus 477 i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~~~~~~~~~~g~~~l 556 (1252)
+
T Consensus 242 ------------------------------------------------------------------------------v- 242 (501)
T COG3845 242 ------------------------------------------------------------------------------V- 242 (501)
T ss_pred ------------------------------------------------------------------------------c-
Confidence 0
Q ss_pred hccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhcccccccccCCCCCCCCCcccccCCCCCCC
Q 000853 557 ESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTA 636 (1252)
Q Consensus 557 ~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1252)
. ... .. ..
T Consensus 243 ----------------------------------------------~---------~~~--------~~--------~~- 250 (501)
T COG3845 243 ----------------------------------------------V---------LRV--------VK--------PP- 250 (501)
T ss_pred ----------------------------------------------c---------ccc--------cc--------CC-
Confidence 0 000 00 00
Q ss_pred CCCCCCccCCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC
Q 000853 637 GPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG 716 (1252)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~ 716 (1252)
..++ +..++.+|++..... ....+++|||++++||++||.|-.|-|-+.|+.+|+|..++
T Consensus 251 -~~pg-------~~vL~V~~L~v~~~~------------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~ 310 (501)
T COG3845 251 -STPG-------EVVLEVEDLSVKDRR------------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP 310 (501)
T ss_pred -CCCC-------CeEEEEeeeEeecCC------------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc
Confidence 0001 235788888764321 24578999999999999999999999999999999998763
Q ss_pred CeEEEEEEECCeeC-C---ccc-ccceEEEEccCCC---CCCCCCHHHHHHHHHHccC----CCCCCHHHHHHHHHHHHH
Q 000853 717 GIIEGDIRIGGYPK-V---QHT-FARISGYCEQNDI---HSPNITVEESVIFSAWLRL----SPEIDLKTKAEFVNEVLQ 784 (1252)
Q Consensus 717 ~~~~G~i~~~g~~~-~---~~~-~~~~~~~v~q~~~---~~~~~tv~e~l~~~~~l~~----~~~~~~~~~~~~~~~~l~ 784 (1252)
.+|+|.++|+++ . ... .+.-++|||+|.. +.+.+|+.||+.+...-+. ..-.......+...++++
T Consensus 311 --~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~ 388 (501)
T COG3845 311 --ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIE 388 (501)
T ss_pred --CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHH
Confidence 369999999986 2 222 2345899999863 4578999999988643211 112344566777889999
Q ss_pred HcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 000853 785 TIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPS 864 (1252)
Q Consensus 785 ~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 864 (1252)
.++....... ...+.||||++||+-+||+|.++|++|+..+||.|||..+.+.|.+.|.+.+++|+.|+++|-+.+
T Consensus 389 ~fdVr~~~~~----~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD 464 (501)
T COG3845 389 EFDVRAPSPD----APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD 464 (501)
T ss_pred HcCccCCCCC----cchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH
Confidence 9887632211 125789999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 865 IDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 865 ~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
|+++.+|++.+|.+ |+++...++++
T Consensus 465 -Eil~lsDrIaVi~~-Gri~~~~~~~~ 489 (501)
T COG3845 465 -EILELSDRIAVIYE-GRIVGIVPPEE 489 (501)
T ss_pred -HHHHhhheeeeeeC-Cceeccccccc
Confidence 89999999999985 89999888764
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-48 Score=387.32 Aligned_cols=215 Identities=27% Similarity=0.378 Sum_probs=190.2
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|++.++ ++..+|+|||++|++||+++|+|||||||||||+||.++.. +.+|+|.+||.++.
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 6778887655 45689999999999999999999999999999999999877 56999999997653
Q ss_pred ----cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 732 ----QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 732 ----~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
....|+.+|+|+|+..+||.+||.||+.++-.. ....++++.+++..+.|+.+||.+.+|.. +.+||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~--v~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK--VKKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHH--HcCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcH
Confidence 235788999999999999999999999987432 13456778888999999999999999876 6799999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|||||+|||||+.+|+++++|||||+|||+...++.+.+++++++|.|.|++||++.. .-+.+||++.|+ +|++++.|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd-~G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMD-QGKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEee-CCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999998764 456789999997 59999999
Q ss_pred CCC
Q 000853 888 PLG 890 (1252)
Q Consensus 888 ~~~ 890 (1252)
+++
T Consensus 219 ~p~ 221 (240)
T COG1126 219 PPE 221 (240)
T ss_pred CHH
Confidence 874
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=388.84 Aligned_cols=220 Identities=24% Similarity=0.327 Sum_probs=192.2
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
+++++++..+... ..+...+|+|||++|++||++||+|+||||||||++++.++.. |++|+|.+||.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 5778887655421 1123569999999999999999999999999999999999877 56999999998754
Q ss_pred c------ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 Q------HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
. +..|+.+|+++|+..++...||.||+.|+..+.. .++++.++++.++++.+||.+..+.. +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 3 3467899999999999999999999999988764 45788889999999999999988876 57999
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
|||||||+|||||+.+|+||++|||||+|||++...|.+.|+++.++ |.||+++||+++ -+-+.|||+.+|. +|+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~-~G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLD-QGRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEee-CCEEE
Confidence 99999999999999999999999999999999999999999999865 999999999864 2556788888887 59999
Q ss_pred EecCCCC
Q 000853 885 YSGPLGQ 891 (1252)
Q Consensus 885 ~~g~~~~ 891 (1252)
+.|++.+
T Consensus 222 E~G~v~~ 228 (339)
T COG1135 222 EEGTVSE 228 (339)
T ss_pred EeccHHH
Confidence 9999754
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-45 Score=370.81 Aligned_cols=229 Identities=26% Similarity=0.362 Sum_probs=200.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.+++++++.++ +++.+++|||++|++||+++|+||||+|||||||+|.|+.+ |.+|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcch
Confidence 58888887654 46789999999999999999999999999999999999988 5699999999986
Q ss_pred Cc------ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCC
Q 000853 731 VQ------HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-KYSLVGLPGVSG 803 (1252)
Q Consensus 731 ~~------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~ 803 (1252)
.. ...++++|+++|+-.+|.++||+||+.|.. |...+.+++..++.+..-|+.+||... .+. .+.+
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafpl--re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~-----~PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPL--REHTKLPESLIRELVLMKLELVGLRGAAADL-----YPSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheeh--HhhccCCHHHHHHHHHHHHHhcCCChhhhhh-----Cchh
Confidence 43 245778999999999999999999999975 444566778888889999999999887 443 3789
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 804 lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
|||||+||+++|||++.+|+||++||||+||||.++..+-++|+++.+. |.|++++|||.+ ++...+|+++++.+ |+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gk 223 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GK 223 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999876 999999999986 68889999999985 89
Q ss_pred EEEecCCCCcch----hHHHHHhhC
Q 000853 883 IIYSGPLGQHSC----KVIDYFESI 903 (1252)
Q Consensus 883 ~~~~g~~~~~~~----~~~~~f~~~ 903 (1252)
|+++|++++..+ .+.+||...
T Consensus 224 v~~~Gt~~el~~sd~P~v~qf~~G~ 248 (263)
T COG1127 224 VIAEGTPEELLASDDPWVRQFFNGI 248 (263)
T ss_pred EEEeCCHHHHHhCCCHHHHHHhcCC
Confidence 999999876432 356777665
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=368.58 Aligned_cols=216 Identities=26% Similarity=0.359 Sum_probs=193.1
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++|+|++..+ +++.+++|+|++|++||++.++|||||||||+||+|.++.. +++|+|++||+++.
T Consensus 2 I~~~nvsk~y-------------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRY-------------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhc-------------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 5788887654 35679999999999999999999999999999999999988 56999999999875
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCH
Q 000853 732 Q---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG--IKYSLVGLPGVSGLST 806 (1252)
Q Consensus 732 ~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~g~~~~~~lSg 806 (1252)
. ...|+.+|||-|.-.+||++||.||+.+--.+. ..++++.+++++|+++.+||.. ..++. +++|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 457899999999999999999999999887665 4567788899999999999975 44443 789999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
||+|||.+||||+.+|+||+||||+++|||.++..+++-++++.++ |+|||++|||.+ |.+.+.|++++|. +|+++.
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEE
Confidence 9999999999999999999999999999999999999999999866 999999999986 7889999999997 599999
Q ss_pred ecCCCCc
Q 000853 886 SGPLGQH 892 (1252)
Q Consensus 886 ~g~~~~~ 892 (1252)
.++|++.
T Consensus 217 ~~~P~~i 223 (309)
T COG1125 217 YDTPDEI 223 (309)
T ss_pred eCCHHHH
Confidence 9998764
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=369.32 Aligned_cols=204 Identities=27% Similarity=0.383 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.+.++++++.+. ...+|+|||++|++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 367777776653 3569999999999999999999999999999999999987 5699999999886
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
......+|||+|++.++|.+||+||+.++...+. ...+++++++.+.|+.+||.+..+.. +++|||||||
T Consensus 68 --~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 --TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred --CCCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 2344567999999999999999999999987764 34456667899999999999998876 6899999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
||+|||||+.+|++|+||||+++||+.|+..+++.|.++.+ .++||+++|||.+ |...+.||+++|.++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999999875 4899999999986 677889999999853
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=394.82 Aligned_cols=201 Identities=20% Similarity=0.239 Sum_probs=159.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.+.++|+++.++.. -.++++++|-|.+++.++++||||+|||||||++.|.+. |..|.|.-.-+.
T Consensus 389 vi~~~nv~F~y~~~------------~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H~- 453 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN------------PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSHN- 453 (614)
T ss_pred eEEEeccccCCCCc------------chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccccc-
Confidence 57888888766432 258999999999999999999999999999999999887 457888655443
Q ss_pred CcccccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 731 VQHTFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
++++..|+. .+..+.++-|++.=.. .++...+.+..++..+||.+..... ..++||+||
T Consensus 454 -------~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gq 514 (614)
T KOG0927|consen 454 -------KLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVV----PMSQLSDGQ 514 (614)
T ss_pred -------cchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCcccccc----chhhccccc
Confidence 234444542 3334567777765211 1133456789999999999665443 257999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|+||.+|+.++.+|.+|+|||||+|||..+...+-+.|.+. ..+||++|||.. -+.+.++++.+..+++...+.|.
T Consensus 515 r~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 515 RRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred chhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCcc
Confidence 99999999999999999999999999999999999999886 468999999976 36778899999998877888887
Q ss_pred C
Q 000853 889 L 889 (1252)
Q Consensus 889 ~ 889 (1252)
.
T Consensus 591 i 591 (614)
T KOG0927|consen 591 I 591 (614)
T ss_pred H
Confidence 4
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=372.76 Aligned_cols=218 Identities=28% Similarity=0.461 Sum_probs=186.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. + ++|+||||++++|++++|+||||||||||+|+|.|.++ |.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~~------------~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYGN------------R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEECC------------E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 5889999988742 2 59999999999999999999999999999999999887 5699999999876
Q ss_pred CcccccceEEEEccCCC--CCCCCCHHHHHHHHHHccCC--CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQHTFARISGYCEQNDI--HSPNITVEESVIFSAWLRLS--PEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
....-+..+|||||... ....+||+|-+..+..-+.. .... ++.++.++++|+.+|+.+.+++.+| +|||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 55444568999999652 23458999999876322211 1122 3346789999999999999998865 8999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
||+|||-|||||+.+|++|+|||||+|+|+.++..+.++|++++++|+||++++||++ .+.+.||+++.|. +++++.
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~ 219 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIAS 219 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEec
Confidence 9999999999999999999999999999999999999999999988999999999997 5888999999995 689999
Q ss_pred cCCCCc
Q 000853 887 GPLGQH 892 (1252)
Q Consensus 887 g~~~~~ 892 (1252)
|++++.
T Consensus 220 G~~~~~ 225 (254)
T COG1121 220 GPPEEV 225 (254)
T ss_pred cChhhc
Confidence 998764
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=395.87 Aligned_cols=214 Identities=29% Similarity=0.450 Sum_probs=188.9
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|++..+.. ++.+|+||||+|++||++|++||||||||||+|+|+|... +++|+|.++|.+..
T Consensus 5 i~~~~l~k~~~~------------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~ 70 (293)
T COG1131 5 IEVRNLTKKYGG------------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVV 70 (293)
T ss_pred eeecceEEEeCC------------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCc
Confidence 566777665421 4679999999999999999999999999999999999988 46999999998865
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 732 Q--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 732 ~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
. ...++.+||+||++.+++.+||+|++.|.+.++.... +..+++++++++.++|.+..++. +++||+|||
T Consensus 71 ~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~k 142 (293)
T COG1131 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGMK 142 (293)
T ss_pred cCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHH
Confidence 4 4567889999999999999999999999999986543 44567899999999999855444 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETG-RTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||+||+||+++|++|||||||+||||.++..+++.|++++++| +||+++||+++ ++...||++++|. +|++++.|+
T Consensus 143 qrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~-~G~~~~~g~ 220 (293)
T COG1131 143 QRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILN-DGKIIAEGT 220 (293)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEe-CCEEEEeCC
Confidence 99999999999999999999999999999999999999999887 89999999986 6777799999997 599999998
Q ss_pred C
Q 000853 889 L 889 (1252)
Q Consensus 889 ~ 889 (1252)
+
T Consensus 221 ~ 221 (293)
T COG1131 221 P 221 (293)
T ss_pred H
Confidence 6
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=345.23 Aligned_cols=213 Identities=26% Similarity=0.362 Sum_probs=186.9
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++|+||+..|+. .+++|+||||+|++||++-|+||||||||||||+|.+... ++.|+|.+||+++.
T Consensus 2 I~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 567777765532 2569999999999999999999999999999999999877 56999999999865
Q ss_pred c---c---cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 Q---H---TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~---~---~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
. + -.||++|+|+||..+.+..||.||+.|+.+..+ .+.++.++++.++|+.+||.+..+.. +.+||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 3 1 358899999999999999999999999987764 34567778899999999999998776 57999
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||+|||+||||++.+|++|+.||||-+|||..+.+|++++.++.+.|.||++.||+ .++.+.+.+.++..++|+++.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd--~~lv~~~~~rvl~l~~Grl~~ 217 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD--LELVNRMRHRVLALEDGRLVR 217 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc--HHHHHhccCcEEEEeCCEEEe
Confidence 999999999999999999999999999999999999999999999889999999997 467777776666666799987
Q ss_pred ecC
Q 000853 886 SGP 888 (1252)
Q Consensus 886 ~g~ 888 (1252)
+..
T Consensus 218 d~~ 220 (223)
T COG2884 218 DES 220 (223)
T ss_pred ccc
Confidence 654
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=353.51 Aligned_cols=203 Identities=27% Similarity=0.388 Sum_probs=184.9
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCH
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
.++++||||+++.||++||+|||||||||+|++|++++. |++|.|++||.+..+ ...++.+|.++.+.-++..+|+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 348999999999999999999999999999999999988 569999999998643 4578899999988888999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000853 755 EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgL 834 (1252)
+|||.|.+++.. ....+.+++.+++.+.++|.++.|+++| ++|.|+||||+|||||+++|++++||||||||
T Consensus 93 rEnl~~Fa~L~~---l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 93 RENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HHHHHHHHHHhh---hhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 999999998864 4556677889999999999999999865 89999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 835 DARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 835 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
|..+...+.+.++++++.|++||++||.++ |+.+.||+++++.+ |++++.|++++
T Consensus 165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~~ 219 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIEA 219 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHHH
Confidence 999999999999999988999999999975 67779999999975 89999999754
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=359.78 Aligned_cols=221 Identities=29% Similarity=0.391 Sum_probs=188.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|++..++ +++++|+|||++|++||+++|+|||||||||||++|.|... +.+|+|.+||.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 478899887764 34679999999999999999999999999999999999776 5689999999765
Q ss_pred Cc------ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-----CCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000853 731 VQ------HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLS-----PEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP 799 (1252)
Q Consensus 731 ~~------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 799 (1252)
.. +++|+.+||++|++.+.+.++|.+|+..+..-+.+ -....++.+..+-+.|+.+|+.+.+..+.
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh---
Confidence 32 35678899999999999999999999876422211 11222444566788999999999887763
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeee
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
..|||||+|||+|||||+.+|+|++.|||+++|||.+++.+|+.|+++.++ |.|||++.|+.+. ..++|||++-|.
T Consensus 146 --~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 146 --STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred --ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 589999999999999999999999999999999999999999999999854 9999999999764 567889999997
Q ss_pred cCcEEEEecCCCCc
Q 000853 879 NGGRIIYSGPLGQH 892 (1252)
Q Consensus 879 ~~G~~~~~g~~~~~ 892 (1252)
+|+++|+||+.+.
T Consensus 223 -~G~ivfDg~~~el 235 (258)
T COG3638 223 -AGRIVFDGPASEL 235 (258)
T ss_pred -CCcEEEeCChhhh
Confidence 5999999998764
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=374.64 Aligned_cols=220 Identities=27% Similarity=0.409 Sum_probs=188.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++.+|+++.|+ ++.+|+|+||++++||+++|+||||||||||||+|+|.++ +.+|+|.+||+++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 367888888763 4679999999999999999999999999999999999887 4589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSP-EIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
.. +.+.+.++|+||.....+.+||+|-+.++..-+... ....++.++.++++|+.+|+.+.+++.+ .+|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 43 457788999999998888999999999874322111 1112334457999999999999998764 68999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
||||||.|||||+.+|++|+||||||+||...+.++++.++++++ +|+|||+++||++. ....||++++|. +|+++.
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk-~G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLK-DGKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEE-CCeEEe
Confidence 999999999999999999999999999999999999999999984 59999999999874 667889999997 599999
Q ss_pred ecCCCCc
Q 000853 886 SGPLGQH 892 (1252)
Q Consensus 886 ~g~~~~~ 892 (1252)
.|++++.
T Consensus 220 ~G~p~ev 226 (258)
T COG1120 220 QGTPEEV 226 (258)
T ss_pred ecCcchh
Confidence 9998753
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=364.27 Aligned_cols=210 Identities=27% Similarity=0.432 Sum_probs=177.0
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++.+|++..+... .....+|++|||+|++||+++|+|||||||||||++|.|... |++|.|.++|.++.
T Consensus 2 i~~~~v~k~y~~~---------~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~ 70 (226)
T COG1136 2 IELKNVSKIYGLG---------GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLT 70 (226)
T ss_pred cEEeeeEEEeccC---------CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcC
Confidence 3466776655332 112579999999999999999999999999999999999887 46999999998764
Q ss_pred cc------c-ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000853 732 QH------T-FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGL 804 (1252)
Q Consensus 732 ~~------~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~l 804 (1252)
.. . .++.+|||+|+..+.|++||+||+.++..+.... ....+++++++++.+||.+..+.. .+.+|
T Consensus 71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~----~p~eL 143 (226)
T COG1136 71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKK----KPSEL 143 (226)
T ss_pred cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccC----Cchhc
Confidence 31 2 3457999999999999999999999887665432 224567788999999999776522 25799
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 805 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 805 SgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
||||||||+|||||+.+|++++.||||.+||+.++..|++.++++.++ |+|||++|||+ ++...+||++.+.+ |+
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKD-GK 219 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeC-Ce
Confidence 999999999999999999999999999999999999999999999865 99999999985 67889999999986 66
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=347.07 Aligned_cols=219 Identities=26% Similarity=0.350 Sum_probs=188.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCC---CCCeEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK---TGGIIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~---~~~~~~G~i~~~g 727 (1252)
.++.+|+++.| +++.+|+|||+.|++++++|++|||||||||||+++.... +.-..+|+|.++|
T Consensus 7 ~~~~~~l~~yY-------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYY-------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEE-------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 47788888776 3567999999999999999999999999999999999743 3335789999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
+++.. ..+|+.+|+|+|.|.-|| +|++||+.|+.++.+..+ ++.++.|++.|+...|++....+.... ..
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s-a~ 148 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS-AL 148 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC-cc
Confidence 98643 247889999999999988 999999999988876443 677889999999999987654444333 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+|||||+|||||||||+.+|+||+||||||+|||.+...|.++|.+|++ .-|||++||.+. ......|+...+.. |+
T Consensus 149 ~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~~-G~ 225 (253)
T COG1117 149 GLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFYL-GE 225 (253)
T ss_pred CCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhcc-cE
Confidence 7999999999999999999999999999999999999999999999985 799999999864 45667789988875 89
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
++++|+.+
T Consensus 226 LvE~g~T~ 233 (253)
T COG1117 226 LVEFGPTD 233 (253)
T ss_pred EEEEcCHH
Confidence 99999974
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=406.75 Aligned_cols=218 Identities=22% Similarity=0.354 Sum_probs=188.3
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++.+|+++.++. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 46889999887631 13569999999999999999999999999999999999987 569999999998
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 730 KVQ--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 730 ~~~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
+.. ...++.+|||+|++.+++.+||+|++.|.++++.. ..++.+++++++++.+||.+..++. +++||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~---~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGR---SWEEAQLEMEAMLEDTGLHHKRNEE-----AQDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHH
Confidence 643 23567799999999999999999999998776532 2334456789999999999887766 4689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|||||+||+||+.+|++|+|||||+|||+.+++.+++.|++++ +|+|||++||+++ ++...+|++++|.+ |+++..|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999995 5999999999975 56678999999974 8999999
Q ss_pred CCCC
Q 000853 888 PLGQ 891 (1252)
Q Consensus 888 ~~~~ 891 (1252)
++..
T Consensus 1143 s~~~ 1146 (2272)
T TIGR01257 1143 TPLF 1146 (2272)
T ss_pred CHHH
Confidence 8743
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=381.26 Aligned_cols=217 Identities=27% Similarity=0.398 Sum_probs=194.7
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|++..+. +..+|+|+|++|++||+++|+|||||||||||++|+|+.. +++|+|.++|.++
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 478888876652 2228999999999999999999999999999999999987 5699999999998
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 731 VQ-HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~-~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
+. ...+|.+++|+|+..+||++||+||+.|+.+++. ..+++.+++|+++.+.++|.+..+++ +++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 76 3456789999999999999999999999988764 34567788999999999999999887 579999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||+|||||+++|++++||||.|+||+..+..+...|+++.++ |.|+|.+|||. .|...++|++++|. +|++...|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999998765 89999999996 47888999999998 699999999
Q ss_pred CCCc
Q 000853 889 LGQH 892 (1252)
Q Consensus 889 ~~~~ 892 (1252)
+.+.
T Consensus 218 p~el 221 (338)
T COG3839 218 PLEL 221 (338)
T ss_pred hHHH
Confidence 8664
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=363.13 Aligned_cols=207 Identities=29% Similarity=0.462 Sum_probs=186.8
Q ss_pred cccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCe---eCCc-ccccceEEEEccCCCCCC
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY---PKVQ-HTFARISGYCEQNDIHSP 750 (1252)
Q Consensus 675 ~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~-~~~~~~~~~v~q~~~~~~ 750 (1252)
+...+++|||++|+.||++|++|||||||||||++|+|+.. ++.|.|.+||. +... ....|++|||+|+..+|+
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 34568999999999999999999999999999999999988 56999999999 5444 344578999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000853 751 NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 830 (1252)
Q Consensus 751 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEP 830 (1252)
.+||.||+.|+.+.+ ...++..+.+.++.+.|+.+.|++..+.. +.+|||||||||++||||+.+|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998877 33455677788999999999999988776 679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 831 TSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 831 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
.++||..-+.++.+.|+++.++ |.|++++|||++ |..+.+|++++|.+ |+|...||+.+
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~e 224 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPDE 224 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHHH
Confidence 9999999999999999999866 999999999986 78999999999975 99999999865
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=383.66 Aligned_cols=218 Identities=28% Similarity=0.399 Sum_probs=194.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|++..+ ++..+|+|+|++|++||+++++|||||||||||++|+|... |++|+|.+||+++
T Consensus 5 ~l~i~~v~k~y-------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSF-------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeec-------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 58888887665 34679999999999999999999999999999999999987 5699999999998
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 731 VQH-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~~-~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
..- ..+|.+|+|+|+..+||++||+||+.|+.+++. ...+++.++++.++++.++|.+..+++ +.+||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHH
Confidence 653 457889999999999999999999999987442 334566778999999999999988776 579999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||++||||+.+|++|+||||.|+||..-+.+++.-|+++.++ |.|.|++|||.+ |...+.|++++|. +|+|...|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~-~G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMN-DGRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEcc-CCceeecCC
Confidence 9999999999999999999999999999999999999998755 999999999975 7788999999997 599999999
Q ss_pred CCCc
Q 000853 889 LGQH 892 (1252)
Q Consensus 889 ~~~~ 892 (1252)
+++.
T Consensus 221 P~ei 224 (352)
T COG3842 221 PEEI 224 (352)
T ss_pred HHHH
Confidence 8764
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=378.28 Aligned_cols=215 Identities=26% Similarity=0.381 Sum_probs=187.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEec
Confidence 588899987663 3469999999999999999999999999999999999887 4689999999986
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 731 VQ--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 731 ~~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
.. ...++.+||++|++.+++.+||+||+.|.+.++. ...++..++++++++.++|.+..++.+ ++|||||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHH
Confidence 43 2356789999999999999999999998776543 233444567889999999988777764 5899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||++||+||+++|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|.+ |++++.|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~ 221 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGA 221 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999975 67778999999975 89999999
Q ss_pred CC
Q 000853 889 LG 890 (1252)
Q Consensus 889 ~~ 890 (1252)
++
T Consensus 222 ~~ 223 (306)
T PRK13537 222 PH 223 (306)
T ss_pred HH
Confidence 74
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=342.58 Aligned_cols=219 Identities=24% Similarity=0.342 Sum_probs=182.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++.+|++..++.... ...+|+||||+|.+||++||+|+||||||||.++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~~---------~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGKF---------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCcc---------hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCccc
Confidence 4778888877754321 1259999999999999999999999999999999999887 4699999999875
Q ss_pred Ccc----cccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000853 731 VQH----TFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGL 804 (1252)
Q Consensus 731 ~~~----~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~l 804 (1252)
... .+++.+.+|+||| .+.|..||++.|.-+.... ..+ +.++++.++++.+||....-++ .+.+|
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~--~~~~~i~~~L~~VgL~~~~l~R----~P~eL 142 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLS--KSQQRIAELLDQVGLPPSFLDR----RPHEL 142 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC---Ccc--HHHHHHHHHHHHcCCCHHHHhc----Cchhc
Confidence 543 4677899999998 4678999999987665432 222 2334489999999997653322 36799
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 805 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 805 SgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
|||||||++|||||+.+|++||||||||+||+..+.+|+++|.++.++ +.|.|++|||.+ -+...|||+++|.+ |++
T Consensus 143 SGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~i 220 (252)
T COG1124 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQI 220 (252)
T ss_pred ChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-CeE
Confidence 999999999999999999999999999999999999999999999865 889999999976 36678899999975 999
Q ss_pred EEecCCCC
Q 000853 884 IYSGPLGQ 891 (1252)
Q Consensus 884 ~~~g~~~~ 891 (1252)
++.++.++
T Consensus 221 vE~~~~~~ 228 (252)
T COG1124 221 VEIGPTEE 228 (252)
T ss_pred EEeechhh
Confidence 99999754
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=377.53 Aligned_cols=219 Identities=23% Similarity=0.299 Sum_probs=187.2
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++.+ .+.+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 6788988776421 012469999999999999999999999999999999999887 46899999999864
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 QH------TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~~------~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
.. ..++.+||++|+..+++..||+||+.+....+. ...++.++++.++++.+||.+..+.. +.+||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~e~l~~vgL~~~~~~~-----~~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEIKRKVTELLALVGLGDKHDSY-----PSNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 31 236689999999999999999999998765432 33455667789999999999887765 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
|||||||+|||||+.+|++|+||||||+||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++++|. +|+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~-~G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999865 999999999975 4667899999997 59999
Q ss_pred EecCCCC
Q 000853 885 YSGPLGQ 891 (1252)
Q Consensus 885 ~~g~~~~ 891 (1252)
+.|++.+
T Consensus 221 ~~g~~~~ 227 (343)
T TIGR02314 221 EQGTVSE 227 (343)
T ss_pred EEcCHHH
Confidence 9998753
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=355.15 Aligned_cols=216 Identities=25% Similarity=0.378 Sum_probs=189.7
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|++|+++. + ..+|+|+|++|++||.++|+|+||||||||+++|+|... +.+|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~~-----------~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG-----------R-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC-----------C-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeec
Confidence 3678899887742 1 469999999999999999999999999999999999988 4589999999985
Q ss_pred C----cccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 731 V----QHTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 731 ~----~~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
. ....++.+|||+|+|. .+..-||.|.+.|+.... ..+.++.+++++++++.+|+.+.+++. +.+||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccC
Confidence 4 3467889999999984 456789999999987544 345567888999999999999987765 57999
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
|||||||+||.+|+.+|++|+|||||||||+..++.+++.++++.++ |+|||++|||.+ .+.+.+|++++|.+ |+++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~ 218 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKIL 218 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEe
Confidence 99999999999999999999999999999999999999999999877 789999999975 57777999999975 8999
Q ss_pred EecCCC
Q 000853 885 YSGPLG 890 (1252)
Q Consensus 885 ~~g~~~ 890 (1252)
++|++.
T Consensus 219 ~~g~p~ 224 (235)
T COG1122 219 ADGDPA 224 (235)
T ss_pred ecCCHH
Confidence 999873
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=321.55 Aligned_cols=197 Identities=27% Similarity=0.380 Sum_probs=172.8
Q ss_pred ceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHHHHHH
Q 000853 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEESVIF 760 (1252)
Q Consensus 682 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~~tv~e~l~~ 760 (1252)
..+++|++||++||+||||||||||||+++|... |.+|+|++||++.... ...|-++.++|+.++|..+||++|+.+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 5678899999999999999999999999999887 4599999999986543 456678999999999999999999988
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 000853 761 SAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840 (1252)
Q Consensus 761 ~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~ 840 (1252)
+..-. .+.+ .+.+++++.++..+||.++.+++ +.+|||||||||++||+|+++-+||+||||+|.|||.-+.
T Consensus 95 Gl~P~--LkL~-a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPG--LKLN-AEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCcc--cccC-HHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 64211 1222 34567799999999999998877 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 841 IVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 841 ~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
++..++.++.+ ++.|++++||+|+ +.....|+++++.+ |+|.+.|+..
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~~ 215 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGSTQ 215 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccHH
Confidence 99999999985 4899999999997 78889999999975 9999999863
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=376.15 Aligned_cols=217 Identities=27% Similarity=0.428 Sum_probs=184.8
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++|+||++.|+.++ +.++|||+||+|+|||.+|++||||+||||+.++|...+. |.+|+|.+||+|
T Consensus 464 G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~ 531 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVP 531 (716)
T ss_pred ceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCee
Confidence 3699999999998653 4679999999999999999999999999999999999887 569999999999
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHcCCcccccccccCCCC
Q 000853 730 KVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAE-----FVNEVLQTIELDGIKYSLVGLPGV 801 (1252)
Q Consensus 730 ~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~g~~~~ 801 (1252)
+.. ..+++++|+|.|+|.+| +-|++||+.|+.. +.++++..+ .+.+.+ .++.+..||.+|..+
T Consensus 532 i~~~~~~~lr~~Ig~V~QEPvLF-s~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGEkG- 602 (716)
T KOG0058|consen 532 ISDINHKYLRRKIGLVGQEPVLF-SGSIRENIAYGLD-----NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGEKG- 602 (716)
T ss_pred hhhcCHHHHHHHeeeeeccceee-cccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHH--HhCccccccccCCcc-
Confidence 653 46789999999999986 5699999999753 233333221 122222 356778999999876
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
..||||||||++|||||++||+||||||+||+||++++..+++.|.++.+ ++|||++.|+. ..++.+|+|++++ +|
T Consensus 603 ~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRL--STV~~Ad~Ivvi~-~G 678 (716)
T KOG0058|consen 603 SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRL--STVRHADQIVVID-KG 678 (716)
T ss_pred ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhh--hHhhhccEEEEEc-CC
Confidence 58999999999999999999999999999999999999999999999875 69999999986 4678999999997 49
Q ss_pred EEEEecCCCC
Q 000853 882 RIIYSGPLGQ 891 (1252)
Q Consensus 882 ~~~~~g~~~~ 891 (1252)
++++.|+.+|
T Consensus 679 ~V~E~G~h~e 688 (716)
T KOG0058|consen 679 RVVEMGTHDE 688 (716)
T ss_pred eEEecccHHH
Confidence 9999998654
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=360.23 Aligned_cols=214 Identities=24% Similarity=0.355 Sum_probs=180.4
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 4677776652 2459999999999999999999999999999999999877 458999999987542
Q ss_pred ------ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 733 ------HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 733 ------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
..+++.++|++|++.+++.+||.||+.+....+. ....++..+++.++++.+++.+..++. +++|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLY-----PAELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCH
Confidence 2346679999999988889999999988754321 123344456788999999998766654 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++...+|++++|. +|++++
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~-~G~i~~ 217 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLY-DGKIVA 217 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEE-CCeEEE
Confidence 9999999999999999999999999999999999999999999864 899999999975 5667899999997 589999
Q ss_pred ecCCC
Q 000853 886 SGPLG 890 (1252)
Q Consensus 886 ~g~~~ 890 (1252)
.|+++
T Consensus 218 ~g~~~ 222 (235)
T cd03261 218 EGTPE 222 (235)
T ss_pred ecCHH
Confidence 99863
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=332.21 Aligned_cols=210 Identities=24% Similarity=0.370 Sum_probs=186.1
Q ss_pred cccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCccc----ccceEEEEccCCCC
Q 000853 673 NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT----FARISGYCEQNDIH 748 (1252)
Q Consensus 673 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~ 748 (1252)
++++++++++||+++++||++|++|||||||||.+.++.|... +.+|+|.+||.+++... .|.-+||.||++..
T Consensus 13 ~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SI 90 (243)
T COG1137 13 SYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASI 90 (243)
T ss_pred hhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccchH
Confidence 3467889999999999999999999999999999999999988 45999999999976532 23458999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000853 749 SPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 828 (1252)
Q Consensus 749 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlD 828 (1252)
|-.+||+||+......+.. +....+++++++++|+.+++.+.++.. ...||||||+|+.|||||+.+|+.++||
T Consensus 91 Fr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~-----a~sLSGGERRR~EIARaLa~~P~fiLLD 164 (243)
T COG1137 91 FRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSK-----AYSLSGGERRRVEIARALAANPKFILLD 164 (243)
T ss_pred hhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCc-----ccccccchHHHHHHHHHHhcCCCEEEec
Confidence 9999999999988777642 223345666789999999999999876 3589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCc
Q 000853 829 EPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 829 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
||++|+||.+..+|+++++.|+++|..|++|-|... |....|||..++.+ |++..+|++++.
T Consensus 165 EPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ei 226 (243)
T COG1137 165 EPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPEEI 226 (243)
T ss_pred CCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHHHH
Confidence 999999999999999999999999999999999986 78899999999985 899999998653
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=372.94 Aligned_cols=216 Identities=24% Similarity=0.351 Sum_probs=187.4
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++++|++..++ ++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 40 ~~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEE
Confidence 3588999988763 3469999999999999999999999999999999999887 458999999998
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 730 KVQ--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 730 ~~~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
... ...++.+||++|++.+++.+|+.||+.+.+.++. ....+..++++++++.++|.+..++.+ ++||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHH
Confidence 643 2356789999999999999999999998765542 223344556788999999998777764 589999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||||++||+||+++|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|.+ |++++.|
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g 254 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEG 254 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 999999999999999999999999999999999999999999877999999999975 67788999999975 8999999
Q ss_pred CCC
Q 000853 888 PLG 890 (1252)
Q Consensus 888 ~~~ 890 (1252)
+++
T Consensus 255 ~~~ 257 (340)
T PRK13536 255 RPH 257 (340)
T ss_pred CHH
Confidence 974
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=375.71 Aligned_cols=217 Identities=25% Similarity=0.355 Sum_probs=188.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|++..++ +++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.+||.++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 377888887652 12468999999999999999999999999999999999887 5699999999986
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 731 VQ-HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~-~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
.. ...++.+|||+|++.+++++||+||+.|+.+.+. .+.++.+++++++++.++|.+..++. +++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRG---MPKAEIEERVAEAARILELEPLLDRK-----PRELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHH
Confidence 43 2235679999999999999999999999865432 34455567789999999998877765 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++..|+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~-~G~i~~~g~ 218 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMN-GGVAEQIGT 218 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEECC
Confidence 9999999999999999999999999999999999999999865 899999999975 6788999999997 599999999
Q ss_pred CCC
Q 000853 889 LGQ 891 (1252)
Q Consensus 889 ~~~ 891 (1252)
+++
T Consensus 219 ~~~ 221 (356)
T PRK11650 219 PVE 221 (356)
T ss_pred HHH
Confidence 754
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=373.40 Aligned_cols=216 Identities=23% Similarity=0.385 Sum_probs=189.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.+||.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 578899987663 2458999999999999999999999999999999999987 5699999999986
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 731 VQH-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~~-~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
... ..++.+|||+|++.+++.+||+||+.|+.+.+. ...++.+++++++++.++|.+..++. ++.||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 542 235679999999999999999999999876542 34455677899999999998877665 568999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|.+ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999975 67788999999985 89999999
Q ss_pred CCC
Q 000853 889 LGQ 891 (1252)
Q Consensus 889 ~~~ 891 (1252)
+++
T Consensus 221 ~~~ 223 (351)
T PRK11432 221 PQE 223 (351)
T ss_pred HHH
Confidence 754
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=374.47 Aligned_cols=216 Identities=26% Similarity=0.411 Sum_probs=188.9
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.+||.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 478889887663 2458999999999999999999999999999999999887 5699999999986
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 731 VQ-HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~-~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
.. ...++.+||++|++.++|.+||+||+.|+.+.+ ..+.++.+++++++++.++|.+..++. +++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHH
Confidence 43 234567999999999999999999999986543 233455667899999999999887765 568999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|.+ |++++.|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999975 67888999999975 89999999
Q ss_pred CCC
Q 000853 889 LGQ 891 (1252)
Q Consensus 889 ~~~ 891 (1252)
+++
T Consensus 219 ~~~ 221 (353)
T TIGR03265 219 PQE 221 (353)
T ss_pred HHH
Confidence 754
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=373.55 Aligned_cols=217 Identities=26% Similarity=0.358 Sum_probs=188.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEE--EEEEECCe
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE--GDIRIGGY 728 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~--G~i~~~g~ 728 (1252)
.++++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCE
Confidence 478889887663 2458999999999999999999999999999999999887 457 99999999
Q ss_pred eCCcc-cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 729 PKVQH-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 729 ~~~~~-~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
++... ..++.+||++|++.+++.+||+||+.|+...+. ...++.+++++++++.++|.+..++. +++||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~-----~~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQK---MPKADIAERVADALKLVGLGDAAAHL-----PAQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhcCCCchhhCC-----hhhCCHH
Confidence 86432 245679999999999999999999999875442 34455567799999999999887766 5689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET--GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~-~G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMK-DGRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 999999999999999999999999999999999999999999876 799999999975 6778899999997 589999
Q ss_pred ecCCCCc
Q 000853 886 SGPLGQH 892 (1252)
Q Consensus 886 ~g~~~~~ 892 (1252)
.|++++.
T Consensus 220 ~g~~~~~ 226 (362)
T TIGR03258 220 HGEPQAL 226 (362)
T ss_pred EcCHHHH
Confidence 9997543
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=369.38 Aligned_cols=203 Identities=27% Similarity=0.402 Sum_probs=177.6
Q ss_pred ccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCC
Q 000853 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNIT 753 (1252)
Q Consensus 676 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~~t 753 (1252)
++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 4569999999999999999999999999999999999887 458999999987643 234667999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000853 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 833 (1252)
Q Consensus 754 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsg 833 (1252)
|+||+.+.+.++. ....+.+++++++++.++|.+..++. +++|||||||||+||+||+++|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRP-----VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998776542 22334456789999999998877765 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 834 LDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 834 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|. +|++++.|+++
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~-~G~i~~~g~~~ 209 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIID-HGRIIAEGTPE 209 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 9999999999999999877999999999975 5677899999997 58999999863
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=370.05 Aligned_cols=218 Identities=25% Similarity=0.376 Sum_probs=186.9
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.+||.++.
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67788887652 2458999999999999999999999999999999999877 45899999999864
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 732 QH-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLS-PEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 732 ~~-~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
.. ..++.+||++|++.+++.+||+||+.|+...+.. .....++.++++.++++.++|.+..++. +.+||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----PAQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 32 2346799999999999999999999998654211 1233455567889999999998877665 568999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|++++.|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~-~G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMS-QGNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999866 899999999975 6778899999997 589999998
Q ss_pred CCC
Q 000853 889 LGQ 891 (1252)
Q Consensus 889 ~~~ 891 (1252)
+++
T Consensus 221 ~~~ 223 (353)
T PRK10851 221 PDQ 223 (353)
T ss_pred HHH
Confidence 754
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=328.45 Aligned_cols=190 Identities=23% Similarity=0.351 Sum_probs=160.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCC----ccccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDE----FVPQKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~----~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+|||||||||||++|.|+.+|+ +|+|.++|.++.. ...|+.+|+|+|+..+||++||.||+..+...-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~ 106 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVK 106 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHc
Confidence 37899999999999999999999987 9999999976632 2246789999999999999999999998753210
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
+.. . .+.+.++.++|+..||.+.+|...+. |||||||||+||
T Consensus 107 -~~~---k-----------------------------~eA~~~A~~lL~~VGL~~ka~~yP~q-----LSGGQqQRVAIA 148 (240)
T COG1126 107 -KLS---K-----------------------------AEAREKALELLEKVGLADKADAYPAQ-----LSGGQQQRVAIA 148 (240)
T ss_pred -CCC---H-----------------------------HHHHHHHHHHHHHcCchhhhhhCccc-----cCcHHHHHHHHH
Confidence 000 0 01123457789999999999988765 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
|||+.+|+++++|||||+|||+...++.+.++++++ .|.|.++ ++|-..-+.+.+|||+.|++|++++.|+++++
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMiv-VTHEM~FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMII-VTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEE-EechhHHHHHhhheEEEeeCCEEEEecCHHHH
Confidence 999999999999999999999999999999999997 4666665 45667788889999999999999999988776
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=331.33 Aligned_cols=205 Identities=25% Similarity=0.405 Sum_probs=186.2
Q ss_pred ccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCC
Q 000853 674 QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNIT 753 (1252)
Q Consensus 674 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~t 753 (1252)
.+++.+++|+||.++||+++|++|||||||||++++|.|.+. +++|+|.++|.+.... .+.+|||.|.+.-+++.+|
T Consensus 12 Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~-~~~rIGyLPEERGLy~k~t 88 (300)
T COG4152 12 FGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQE-IKNRIGYLPEERGLYPKMT 88 (300)
T ss_pred cCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhh-hhhhcccChhhhccCccCc
Confidence 356789999999999999999999999999999999999988 5699999999986543 4557899999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000853 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 833 (1252)
Q Consensus 754 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsg 833 (1252)
|.|.|.|.|++++ .+.++.++.+...|+.+++.+...++ +.+||.|++|++.+-.+++++|+++|||||+||
T Consensus 89 v~dql~yla~LkG---m~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfisaviHePeLlILDEPFSG 160 (300)
T COG4152 89 VEDQLKYLAELKG---MPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFISAVIHEPELLILDEPFSG 160 (300)
T ss_pred HHHHHHHHHHhcC---CcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHHHHhcCCCEEEecCCccC
Confidence 9999999999985 45667778899999999999888776 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 834 LDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 834 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
|||.+.+.+.+.+.+++++|.|||+++|+++ .+.++||++++|. +|+.|.+|++.+
T Consensus 161 LDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~-kG~~V~~G~v~~ 216 (300)
T COG4152 161 LDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLK-KGQTVLYGTVED 216 (300)
T ss_pred CChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheec-CCceEEeccHHH
Confidence 9999999999999999999999999999986 6888999999997 589999999753
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=347.27 Aligned_cols=199 Identities=30% Similarity=0.450 Sum_probs=170.0
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-ccccceEEEEccCCCCCCCCCHH
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-HTFARISGYCEQNDIHSPNITVE 755 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~~tv~ 755 (1252)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|++
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHH
Confidence 468999999999999999999999999999999999877 468999999987643 22356789999999888899999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000853 756 ESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835 (1252)
Q Consensus 756 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD 835 (1252)
||+.+...... ...+..+++++++++.+++.+..++. +.+||||||||++|||+|+.+|++|+|||||+|||
T Consensus 91 ~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD 162 (213)
T cd03259 91 ENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRY-----PHELSGGQQQRVALARALAREPSLLLLDEPLSALD 162 (213)
T ss_pred HHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99988654321 22334456688999999998766654 46899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 836 ARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 836 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 163 AKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999764 899999999975 56678999999975 8888765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=369.99 Aligned_cols=216 Identities=25% Similarity=0.343 Sum_probs=188.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.+. ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478899987663 2458999999999999999999999999999999999887 4689999999986
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 731 VQ-HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~-~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
.. ...++.+||++|++.++|.+||.||+.|+...+. ....+.+++++++++.++|.+..++. +.+||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----p~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQK---TPAAEITPRVMEALRMVQLEEFAQRK-----PHQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 43 2245679999999999999999999999865432 23445566789999999999877765 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~-~G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMR-DGRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999865 999999999975 6778899999997 599999999
Q ss_pred CCC
Q 000853 889 LGQ 891 (1252)
Q Consensus 889 ~~~ 891 (1252)
+.+
T Consensus 229 ~~~ 231 (375)
T PRK09452 229 PRE 231 (375)
T ss_pred HHH
Confidence 754
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=369.68 Aligned_cols=216 Identities=25% Similarity=0.366 Sum_probs=187.9
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|++..+. ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 588899987652 2458999999999999999999999999999999999987 4589999999986
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 731 VQ-HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~-~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
.. ...++.+||++|++.+++.+||.||+.|+.+.+. ....+.++++.++++.++|.+..++. +.+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDK---LPKAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 43 2346789999999999999999999999865432 23455667899999999998877665 568999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~-~G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMN-RGKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEe-CCEEEEEcC
Confidence 9999999999999999999999999999999999999998754 899999999975 6788999999997 589999999
Q ss_pred CCC
Q 000853 889 LGQ 891 (1252)
Q Consensus 889 ~~~ 891 (1252)
+++
T Consensus 234 ~~~ 236 (377)
T PRK11607 234 PEE 236 (377)
T ss_pred HHH
Confidence 754
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=347.41 Aligned_cols=200 Identities=27% Similarity=0.417 Sum_probs=172.7
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 756 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e 756 (1252)
+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++. ..++.++|++|++.+++.+|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVT--GPGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECc--cccCcEEEEecccccccCCCHHH
Confidence 469999999999999999999999999999999999876 45899999998764 24567899999998888899999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000853 757 SVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 836 (1252)
Q Consensus 757 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~ 836 (1252)
|+.+....+. ...+...++++++++.+++.+..++. +.+||||||||++|||||+.+|++++|||||+|||+
T Consensus 93 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQG---VPKAEARERAEELLELVGLSGFENAY-----PHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 9998754432 22334456788999999998766654 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeec-CcEEEEecCC
Q 000853 837 RAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKN-GGRIIYSGPL 889 (1252)
Q Consensus 837 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~~~~g~~ 889 (1252)
.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|.+ +|++++.+++
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999865 4899999999975 56678999999975 5999998875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=364.31 Aligned_cols=215 Identities=25% Similarity=0.353 Sum_probs=183.7
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478889887663 2469999999999999999999999999999999999877 4589999999875
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 731 VQ--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 731 ~~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
.. ...++.+||++|++.+++.+||+||+.+.+..+. ...++..++++++++.++|.+..++. +++|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~-----~~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVR-----VALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCc-----hhhCCHHH
Confidence 32 2346679999999988889999999987654432 22334445678899999998877665 45899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|. +|++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLE-SGRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 99999999999999999999999999999999999999999877999999999975 5667899999997 589999998
Q ss_pred CC
Q 000853 889 LG 890 (1252)
Q Consensus 889 ~~ 890 (1252)
++
T Consensus 219 ~~ 220 (303)
T TIGR01288 219 PH 220 (303)
T ss_pred HH
Confidence 63
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=347.86 Aligned_cols=213 Identities=27% Similarity=0.351 Sum_probs=180.0
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 66 (220)
T cd03265 2 EVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVR 66 (220)
T ss_pred EEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCc
Confidence 4677776552 2469999999999999999999999999999999999876 458999999987532
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 733 --HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 733 --~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
...++.++|++|++.+++.+||+||+.+....+. ...++.+++++++++.++|.+..++. +..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 138 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRL-----VKTYSGGMRR 138 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHH
Confidence 2345678999999988889999999998765432 22334456788999999998766655 4689999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCC
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 889 (1252)
|++||+||+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|. +|++++.|++
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 216 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIID-HGRIIAEGTP 216 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEeCCh
Confidence 999999999999999999999999999999999999999876 899999999975 5667789999997 5899998876
Q ss_pred C
Q 000853 890 G 890 (1252)
Q Consensus 890 ~ 890 (1252)
+
T Consensus 217 ~ 217 (220)
T cd03265 217 E 217 (220)
T ss_pred H
Confidence 3
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=347.43 Aligned_cols=209 Identities=25% Similarity=0.353 Sum_probs=175.3
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 567888876631 12359999999999999999999999999999999999877 45899999998753
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 QH------TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~~------~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
.. .+++.++|++|++.+++.+||.||+.+....+. ...+..++++.++++.+++.+..++. +.+||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHAL-----PMQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCC
Confidence 21 245679999999988889999999998765432 22334456788999999998776655 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.+ |++
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i 216 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GRL 216 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CcC
Confidence 99999999999999999999999999999999999999999999777999999999975 45667899999975 653
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=367.98 Aligned_cols=205 Identities=23% Similarity=0.309 Sum_probs=179.7
Q ss_pred cccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc---cc----cceEEEEccCCC
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TF----ARISGYCEQNDI 747 (1252)
Q Consensus 675 ~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~----~~~~~~v~q~~~ 747 (1252)
+.+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... .. ++.++||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 34569999999999999999999999999999999999987 5699999999986532 22 568999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000853 748 HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 827 (1252)
Q Consensus 748 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illl 827 (1252)
+++.+||+||+.|...+. ....++..+++.++++.+||.+..++. +.+|||||||||+|||||+.+|++|+|
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~-----p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRY-----PDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986553 234455667899999999998776665 568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 828 DEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 828 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
||||++||+.++..+++.++++.++ |+|||++||+++ ++...+|++++|. +|+++..|++++
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~-~G~iv~~g~~~e 216 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMK-AGEIVQVGTPDE 216 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEeeCCHHH
Confidence 9999999999999999999999754 899999999975 5678899999997 589999998754
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=332.78 Aligned_cols=209 Identities=24% Similarity=0.357 Sum_probs=182.8
Q ss_pred cccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCccc----ccceEEEEccCCCCCC
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT----FARISGYCEQNDIHSP 750 (1252)
Q Consensus 675 ~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~ 750 (1252)
+...+++||||++++||++||+||||||||||+|+|+|.++ |++|+|.++|.++.... .+.-++-.+|...+|+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 45679999999999999999999999999999999999988 56999999999876432 2445788899999999
Q ss_pred CCCHHHHHHHHHHccC--------CC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000853 751 NITVEESVIFSAWLRL--------SP-EIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVAN 821 (1252)
Q Consensus 751 ~~tv~e~l~~~~~l~~--------~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~ 821 (1252)
++||.||+..++..+. +. ....++..+++.++|+.+||.+.+++.. .+||+||||||.|||||+++
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A-----~~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA-----GNLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh-----hcCChhHhHHHHHHHHHhcC
Confidence 9999999998865331 11 1134566788999999999999999874 48999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCc
Q 000853 822 PSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 822 p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
|++|+||||.+||.+....++.+.|++++++ |.||+++-|+++ -++..||+++||.. |+++.+|+|++.
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P~eV 237 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTPEEV 237 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCHHHH
Confidence 9999999999999999999999999999974 799999999987 48899999999975 899999998754
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=367.16 Aligned_cols=219 Identities=21% Similarity=0.304 Sum_probs=184.9
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++.. .+++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5788888876411 013569999999999999999999999999999999999887 46899999999864
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 QH------TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~~------~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
.. ..++.+||++|++.+++.+||+||+.+....+. ...++.++++.++++.+||.+..++. +++||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRY-----PAQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 31 235679999999998889999999998765432 23344556789999999998776654 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
|||||||+|||||+++|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|. +|+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~-~G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVID-AGRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999765 899999999975 5667899999997 58999
Q ss_pred EecCCCC
Q 000853 885 YSGPLGQ 891 (1252)
Q Consensus 885 ~~g~~~~ 891 (1252)
+.|++++
T Consensus 221 ~~g~~~~ 227 (343)
T PRK11153 221 EQGTVSE 227 (343)
T ss_pred EEcCHHH
Confidence 9998643
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=369.29 Aligned_cols=216 Identities=26% Similarity=0.378 Sum_probs=185.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 377888887652 2468999999999999999999999999999999999887 4589999999886
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 731 VQH-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~~-~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
... ..++.+||++|++.+++.+||+||+.|....+. ...++.+++++++++.++|.+..++. +.+||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~-----~~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRK-----PKALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHH
Confidence 432 234679999999999999999999999865432 23345556789999999998777665 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~-~G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999975 5778899999997 589999998
Q ss_pred CCC
Q 000853 889 LGQ 891 (1252)
Q Consensus 889 ~~~ 891 (1252)
+++
T Consensus 218 ~~~ 220 (369)
T PRK11000 218 PLE 220 (369)
T ss_pred HHH
Confidence 754
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=349.42 Aligned_cols=218 Identities=26% Similarity=0.373 Sum_probs=181.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367888887663 2459999999999999999999999999999999999876 4689999999876
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 731 VQH-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLS-PEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 731 ~~~-~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
... ..++.++|++|++.+++.+||+||+.+....+.. ......+..++++++++.++|.+..++. +.+|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----PAQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHH
Confidence 432 2345789999999888889999999987543321 0012233445678899999998766654 46899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|++++.|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMN-KGRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEec
Confidence 99999999999999999999999999999999999999999865 899999999975 4667899999997 58999999
Q ss_pred CCC
Q 000853 888 PLG 890 (1252)
Q Consensus 888 ~~~ 890 (1252)
+++
T Consensus 220 ~~~ 222 (239)
T cd03296 220 TPD 222 (239)
T ss_pred CHH
Confidence 863
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=343.56 Aligned_cols=209 Identities=24% Similarity=0.404 Sum_probs=176.6
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 4667776552 2458999999999999999999999999999999999876 468999999987643
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 000853 733 HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRL 812 (1252)
Q Consensus 733 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv 812 (1252)
..++.++|++|++.+++.+|++||+.+....+. ....+.++.+.++++.+++.+..++. +.+||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHH
Confidence 345678999999988888999999988765442 22334456788999999998766654 468999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 813 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 813 ~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLN-KGRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEe-CCEEEecC
Confidence 9999999999999999999999999999999999999877899999999975 4667789999997 48887754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=343.12 Aligned_cols=210 Identities=27% Similarity=0.386 Sum_probs=176.7
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 4677776552 2458999999999999999999999999999999999876 458999999988643
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000853 733 H-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKR 811 (1252)
Q Consensus 733 ~-~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqr 811 (1252)
. ..++.++|++|++.+++..|++||+.+....+. ...++.+++++++++.+++.+..+.. ++.||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRK-----PKQLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCC-----hhhCCHHHHHH
Confidence 2 234579999999988888999999988754331 22344456788999999998776655 46899999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 812 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 812 v~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMN-DGQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEE-CCEEEecC
Confidence 99999999999999999999999999999999999999864 899999999975 5667789999997 58988875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=350.00 Aligned_cols=205 Identities=27% Similarity=0.390 Sum_probs=173.2
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc---c-ccceEEEEccCCCCCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---T-FARISGYCEQNDIHSPNI 752 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~~v~q~~~~~~~~ 752 (1252)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 458999999999999999999999999999999999876 4589999999876432 1 235689999999999999
Q ss_pred CHHHHHHHHHHccCCCC-------CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEE
Q 000853 753 TVEESVIFSAWLRLSPE-------IDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 825 (1252)
Q Consensus 753 tv~e~l~~~~~l~~~~~-------~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~il 825 (1252)
||+||+.+....+.... ...++..+++.++++.+++.+..++. +++||||||||++|||||+.+|++|
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~ll 165 (236)
T cd03219 91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----AGELSYGQQRRLEIARALATDPKLL 165 (236)
T ss_pred CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988754332110 01234456788999999998766554 4689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 826 FMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 826 llDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.|+++
T Consensus 166 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 228 (236)
T cd03219 166 LLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLD-QGRVIAEGTPD 228 (236)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEeecCHH
Confidence 999999999999999999999999877899999999975 5667799999997 48999998863
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=369.69 Aligned_cols=219 Identities=24% Similarity=0.346 Sum_probs=185.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 377888887652 3569999999999999999999999999999999999887 4689999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLS-PEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
.. ...++.+||++|++.+++.+||+|++.++...+.. .....+..+++++++++.+++.+..++. +++|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCH
Confidence 43 34567899999999988999999999886421110 0101223456789999999998877765 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
|||||++|||||+++|++|+|||||+|||+.++.++++.|++++++|+|||+++|+++ ++.+.||++++|. +|++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~-~G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLA-DGRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEe
Confidence 9999999999999999999999999999999999999999999877899999999975 5668899999997 5899999
Q ss_pred cCCCC
Q 000853 887 GPLGQ 891 (1252)
Q Consensus 887 g~~~~ 891 (1252)
|++++
T Consensus 221 G~~~e 225 (402)
T PRK09536 221 GPPAD 225 (402)
T ss_pred cCHHH
Confidence 99764
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=360.13 Aligned_cols=213 Identities=22% Similarity=0.368 Sum_probs=184.4
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67888887652 3469999999999999999999999999999999999877 56899999998764
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 732 Q--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 732 ~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
. ...++.+||++|++.+++.+|+.||+.+.+.++. ...++..++++++++.+||.+..++. ++.||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKK-----IGQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCc-----hhhCCHHHH
Confidence 3 2346679999999999999999999998876543 22334456688999999999887766 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 889 (1252)
||++||+||+++|++|+|||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.||++++|. +|++++.|++
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~-~G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIIN-KGKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999999999999999965 799999999975 5778899999997 5999999997
Q ss_pred C
Q 000853 890 G 890 (1252)
Q Consensus 890 ~ 890 (1252)
+
T Consensus 217 ~ 217 (301)
T TIGR03522 217 D 217 (301)
T ss_pred H
Confidence 4
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=347.76 Aligned_cols=213 Identities=24% Similarity=0.358 Sum_probs=179.4
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 4667776552 2469999999999999999999999999999999999877 458999999987542
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 733 H---T-FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 733 ~---~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
. . .++.++|++|++.+++.+|++||+.+....+. ...+...++++++++.+++.+..++. ++.|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHH
Confidence 1 1 23568999999998899999999988654332 22334455678999999998766654 46899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||++||+||+.+|++|+|||||+|||+.+++.+.+.|+++.++|+|||++||+++ ++.+.+|++++|. +|++++.|+
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~ 216 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIY-EGKVLAEGT 216 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEEeC
Confidence 99999999999999999999999999999999999999999877899999999975 6778899999997 589999988
Q ss_pred CC
Q 000853 889 LG 890 (1252)
Q Consensus 889 ~~ 890 (1252)
.+
T Consensus 217 ~~ 218 (232)
T cd03218 217 PE 218 (232)
T ss_pred HH
Confidence 64
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=343.86 Aligned_cols=215 Identities=24% Similarity=0.412 Sum_probs=179.8
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++.. .+...+++|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 5678888765321 011269999999999999999999999999999999999877 45899999998764
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 732 Q--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 732 ~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
. ..+++.++|++|++.+++.+||+||+.+....+. ...++..++++++++.+++.+..+.. +++||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHH
Confidence 3 2346679999999988888999999988654432 23344556788999999998766654 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.+ |++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999777999999999975 56678999999975 8887754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=346.44 Aligned_cols=214 Identities=26% Similarity=0.327 Sum_probs=177.2
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCC-----CCCeEEEEEEECC
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK-----TGGIIEGDIRIGG 727 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~-----~~~~~~G~i~~~g 727 (1252)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|.. + +.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDG 66 (227)
T ss_pred EEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECC
Confidence 4567776542 346999999999999999999999999999999999987 5 5689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.++ .+||+||+.+....+.. ...++.++++.++++.+++.+..+.... +.
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 87532 23456799999998877 79999999887544321 1122245668899999999876554321 36
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ ++.+.+|++++|. +|+
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~-~G~ 217 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLL-NGR 217 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEe-CCE
Confidence 89999999999999999999999999999999999999999999999876 99999999975 5667899999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 218 i~~~g~~~ 225 (227)
T cd03260 218 LVEFGPTE 225 (227)
T ss_pred EEEecCcc
Confidence 99999864
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=383.20 Aligned_cols=216 Identities=29% Similarity=0.434 Sum_probs=180.2
Q ss_pred CcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCe
Q 000853 649 PLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 728 (1252)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 728 (1252)
...++++|++|.|... +..+|+|+|++|+|||.+||+|+||||||||+|+|+|++. |.+|+|++||.
T Consensus 469 ~g~I~~~nvsf~y~~~-----------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~dg~ 535 (709)
T COG2274 469 QGEIEFENVSFRYGPD-----------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDGV 535 (709)
T ss_pred CceEEEEEEEEEeCCC-----------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCE
Confidence 3469999999988532 2369999999999999999999999999999999999988 56999999999
Q ss_pred eCC---cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-------CcccccccccC
Q 000853 729 PKV---QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE-------LDGIKYSLVGL 798 (1252)
Q Consensus 729 ~~~---~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~g~ 798 (1252)
|.. ...+|+.+|||+||+.++ +-|++||+.++. ++.+.+ .+.++++..| +..-.++.+|+
T Consensus 536 dl~~i~~~~lR~~ig~V~Q~~~Lf-~gSI~eNi~l~~-----p~~~~e----~i~~A~~~ag~~~fI~~lP~gy~t~v~E 605 (709)
T COG2274 536 DLNDIDLASLRRQVGYVLQDPFLF-SGSIRENIALGN-----PEATDE----EIIEAAQLAGAHEFIENLPMGYDTPVGE 605 (709)
T ss_pred eHHhcCHHHHHhheeEEcccchhh-cCcHHHHHhcCC-----CCCCHH----HHHHHHHHhCcHHHHHhccccccccccc
Confidence 864 356899999999998775 569999998753 233322 2333343333 34456677776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee
Q 000853 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 799 ~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
.+ .+||||||||++|||||+++|+||+||||||+||+.+++.|.+.|+++.. |+|+|+++|+++ ....+|++++|+
T Consensus 606 ~G-~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~ 681 (709)
T COG2274 606 GG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLD 681 (709)
T ss_pred CC-CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEcc
Confidence 54 68999999999999999999999999999999999999999999999864 899999999864 678999999997
Q ss_pred cCcEEEEecCCCCc
Q 000853 879 NGGRIIYSGPLGQH 892 (1252)
Q Consensus 879 ~~G~~~~~g~~~~~ 892 (1252)
+|+++++|+.++.
T Consensus 682 -~Gkiv~~gs~~el 694 (709)
T COG2274 682 -QGKIVEQGSHEEL 694 (709)
T ss_pred -CCceeccCCHHHH
Confidence 5999999997543
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=324.78 Aligned_cols=216 Identities=25% Similarity=0.361 Sum_probs=179.4
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++.+|++..| ++.++|++|||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecC
Confidence 6677777654 44679999999999999999999999999999999999887 45899999999976
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCH
Q 000853 732 QH----TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE-LDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 732 ~~----~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~g~~~~~~lSg 806 (1252)
.. ..++-++||||....|+.+||+|||..++..+.. ++..+..++++.+.+- |.+.++.+- ..|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~a-----G~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRA-----GTLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcc-----cCCCh
Confidence 43 2456789999999999999999999988654422 1111222667777764 556666553 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
||||.++|||||+.+|++|+|||||.||-|.-.++|.+.|++++++ |.||+++-+... ...+.+|+.++|. .|++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle-~Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLE-NGRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEe-CCEEEE
Confidence 9999999999999999999999999999999999999999999966 779999988765 4567889999997 599999
Q ss_pred ecCCCCcc
Q 000853 886 SGPLGQHS 893 (1252)
Q Consensus 886 ~g~~~~~~ 893 (1252)
+|+.++..
T Consensus 218 ~G~~~eL~ 225 (237)
T COG0410 218 SGTAAELL 225 (237)
T ss_pred ecCHHHHh
Confidence 99986543
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=340.56 Aligned_cols=206 Identities=28% Similarity=0.401 Sum_probs=174.4
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 4677776552 2469999999999999999999999999999999999876 468999999987542
Q ss_pred -ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000853 733 -HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKR 811 (1252)
Q Consensus 733 -~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqr 811 (1252)
...++.++|++|++.+++.+|++||+.+....+. . .+++++++++.+++.+..++. +..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHH
Confidence 2345678999999988889999999988754331 1 134578899999998776654 46899999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 812 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 812 v~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~-~g~i~~~g 208 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIIN-KGKLIEEG 208 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 99999999999999999999999999999999999999877899999999975 4667789999997 58888765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=354.79 Aligned_cols=219 Identities=22% Similarity=0.332 Sum_probs=181.5
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++... ...+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 67889988764210 012469999999999999999999999999999999999887 45899999998864
Q ss_pred c-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCC
Q 000853 732 Q-----HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD--GIKYSLVGLPGVSG 803 (1252)
Q Consensus 732 ~-----~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~g~~~~~~ 803 (1252)
. ...++.+||++|++. .+...||+||+.|..... ....++..+++.++++.+||. +..++. ++.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 3 134678999999974 334689999999875432 234455567789999999996 444443 568
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 804 lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++...||++++|.+ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999865 899999999965 46678999999975 89
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|++.
T Consensus 223 i~~~g~~~ 230 (287)
T PRK13637 223 CELQGTPR 230 (287)
T ss_pred EEEECCHH
Confidence 99999864
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=354.27 Aligned_cols=205 Identities=23% Similarity=0.308 Sum_probs=174.5
Q ss_pred ccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc---c----ccceEEEEccCC
Q 000853 674 QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---T----FARISGYCEQND 746 (1252)
Q Consensus 674 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~ 746 (1252)
++++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.++|++|++
T Consensus 34 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred cCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 445679999999999999999999999999999999999887 4589999999875421 1 135789999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 000853 747 IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 826 (1252)
Q Consensus 747 ~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~ill 826 (1252)
.+++.+|++||+.+....+. .......+++.++++.++|.+..++. +++||||||||++|||||+.+|++||
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKY-----PDELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88889999999998754331 22334456788999999998776665 46899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 827 MDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 827 lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|. +|++++.|+++
T Consensus 184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~-~G~i~~~g~~~ 246 (269)
T cd03294 184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMK-DGRLVQVGTPE 246 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEEeCCHH
Confidence 99999999999999999999999754 899999999975 4667899999997 58999999864
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=343.08 Aligned_cols=208 Identities=28% Similarity=0.422 Sum_probs=171.9
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++... +.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~~~---------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~ 70 (218)
T cd03255 2 ELKNLSKTYGGGG---------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISK 70 (218)
T ss_pred eEeeeEEEecCCC---------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhh
Confidence 4677776653210 01469999999999999999999999999999999999877 468999999987543
Q ss_pred cc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 733 HT-------FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 733 ~~-------~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
.. .++.++|++|++.+++.+||+||+.+....+. ......+++++++++.+||.+..++. ++.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 142 (218)
T cd03255 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHY-----PSELS 142 (218)
T ss_pred cchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcC-----hhhcC
Confidence 11 24579999999988889999999998765432 22233456788999999998766554 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++ +.+|++++|.+ |+
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRD-GK 217 (218)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeC-Cc
Confidence 9999999999999999999999999999999999999999999986 5899999999975 34 48999999975 65
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=343.26 Aligned_cols=214 Identities=26% Similarity=0.400 Sum_probs=179.1
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++. +.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (220)
T cd03263 2 QIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRT 68 (220)
T ss_pred EEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 46677765521 11469999999999999999999999999999999999877 468999999987643
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 733 --HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 733 --~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
..+++.++|++|++.+++..|++||+.+....+. ...++..++++++++.++|.+..++. +.+|||||||
T Consensus 69 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 140 (220)
T cd03263 69 DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKR 140 (220)
T ss_pred chHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHH
Confidence 2345679999999988889999999998765432 22333455688999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
|++|||+|+.+|++|+|||||+|||+.+++.+.+.|+++++ ++|||++||+++ .+.+.+|++++|. +|++++.|+++
T Consensus 141 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~ 217 (220)
T cd03263 141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMS-DGKLRCIGSPQ 217 (220)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEE-CCEEEecCCHH
Confidence 99999999999999999999999999999999999999876 699999999975 4667789999997 58999998864
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=349.08 Aligned_cols=206 Identities=29% Similarity=0.386 Sum_probs=171.6
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc------cccceEEEEccCCCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH------TFARISGYCEQNDIHSP 750 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~ 750 (1252)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 468999999999999999999999999999999999876 4589999999875421 24567999999998888
Q ss_pred CCCHHHHHHHHHHcc-----CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEE
Q 000853 751 NITVEESVIFSAWLR-----LSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 825 (1252)
Q Consensus 751 ~~tv~e~l~~~~~l~-----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~il 825 (1252)
.+||+||+.+..... .......+...+++.++++.+++.+..+.. +.+|||||||||+||+||+.+|++|
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 899999998753211 000111123345678899999997765554 4689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 826 FMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 826 llDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|++++.|++++
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~-~G~i~~~~~~~~ 231 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLK-DGRIVFDGPPAE 231 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEeecCHHH
Confidence 999999999999999999999999764 899999999976 5666899999997 589999998643
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=341.26 Aligned_cols=217 Identities=24% Similarity=0.358 Sum_probs=179.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++.. ...+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 47889998876321 011469999999999999999999999999999999999876 4689999999886
Q ss_pred Cccc------c-cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000853 731 VQHT------F-ARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSG 803 (1252)
Q Consensus 731 ~~~~------~-~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 803 (1252)
.... . ++.++|++|++.+++.+|++||+.+....+. ...++.++++.++++.+||.+..++. +.+
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK---KKPAEINSRALEMLAAVGLEHRANHR-----PSE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhhCC-----hhh
Confidence 4321 2 2568999999988889999999998654321 22334456788999999998766554 468
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 804 lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||+++ ....+|++++|. +|+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~--~~~~~~~~~~l~-~G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ--LAKRMSRQLEMR-DGR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhhCEEEEEE-CCE
Confidence 999999999999999999999999999999999999999999999975 5899999999974 345578888886 589
Q ss_pred EEEecCC
Q 000853 883 IIYSGPL 889 (1252)
Q Consensus 883 ~~~~g~~ 889 (1252)
+++.|+.
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9998874
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=340.45 Aligned_cols=221 Identities=36% Similarity=0.632 Sum_probs=180.3
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC-CeEEEEEEECCeeC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG-GIIEGDIRIGGYPK 730 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 730 (1252)
+.|+|+++.++.. ...+.+++|+||++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 5677887766321 0135799999999999999999999999999999999998751 13589999999886
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHH-HHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNE-VLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
....+++.++|++|++.+++.+|++||+.+............+...+++++ .++.+++.+..++. +++||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 544567789999999998999999999998765432221122222334555 88888887766544 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|+|++||++..++.+.+|++++|.+ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999999877899999999974468889999999975 8998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=345.97 Aligned_cols=217 Identities=24% Similarity=0.320 Sum_probs=180.6
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++.. .+.+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 4677777665310 001269999999999999999999999999999999999887 46899999999864
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 QH------TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~~------~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
.. ..++.++|++|++.+++.+|++||+.+....+. ...+...+.+.++++.+++.+..+.. +.+||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAY-----PAQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCC
Confidence 31 235679999999998889999999988754432 22334456788999999998766654 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVME-KGEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999765 899999999975 4667789999997 58999
Q ss_pred EecCC
Q 000853 885 YSGPL 889 (1252)
Q Consensus 885 ~~g~~ 889 (1252)
+.|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 99875
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=345.98 Aligned_cols=215 Identities=26% Similarity=0.368 Sum_probs=180.6
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 56778877652 2458999999999999999999999999999999999876 56899999998864
Q ss_pred c-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 732 Q-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 732 ~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
. ..+++.++|++|++.+++.+||.||+.+..... .....++.++++.++++.+|+.+..+.. ++.|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHY-----PSELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCH
Confidence 2 234567999999998888999999998764211 1123344456788999999998766654 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFID-KGRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEee
Confidence 9999999999999999999999999999999999999999999877999999999975 4667789999997 5899999
Q ss_pred cCCC
Q 000853 887 GPLG 890 (1252)
Q Consensus 887 g~~~ 890 (1252)
|+++
T Consensus 218 g~~~ 221 (240)
T PRK09493 218 GDPQ 221 (240)
T ss_pred CCHH
Confidence 9864
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=339.77 Aligned_cols=192 Identities=28% Similarity=0.401 Sum_probs=163.5
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCC-CCCCCCHH
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDI-HSPNITVE 755 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~-~~~~~tv~ 755 (1252)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.....++.++|++|++. .++..|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 468999999999999999999999999999999999877 468999999988644445667999999974 34567999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000853 756 ESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835 (1252)
Q Consensus 756 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD 835 (1252)
||+.+...... . ..+++.++++.+++.+..++. +.+||||||||++|||||+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKELD----A---GNEQAETVLKDLDLYALKERH-----PLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhcC----c---cHHHHHHHHHHcCCchhcCCC-----chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 99987643221 1 124578899999998776655 46899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 836 ARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 836 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999999777999999999975 46667999999975 7764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=354.63 Aligned_cols=220 Identities=21% Similarity=0.314 Sum_probs=181.7
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++... .....+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceecc
Confidence 77899998874211 012359999999999999999999999999999999999887 45899999986531
Q ss_pred ---------------------------cccccceEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 000853 732 ---------------------------QHTFARISGYCEQND-IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVL 783 (1252)
Q Consensus 732 ---------------------------~~~~~~~~~~v~q~~-~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l 783 (1252)
...+++.+||++|++ ..+...||+||+.|+.... ....++.++++.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 123466799999986 3445679999999875432 234455567789999
Q ss_pred HHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Q 000853 784 QTIELD-GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQ 862 (1252)
Q Consensus 784 ~~~~l~-~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 862 (1252)
+.+||. +..++. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 555544 56899999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 863 PSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 863 ~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
++ ++.+.+|++++|. +|++++.|++++
T Consensus 225 ~~-~~~~~adrv~vl~-~G~i~~~g~~~~ 251 (305)
T PRK13651 225 LD-NVLEWTKRTIFFK-DGKIIKDGDTYD 251 (305)
T ss_pred HH-HHHHhCCEEEEEE-CCEEEEECCHHH
Confidence 65 4678899999997 589999998754
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=356.09 Aligned_cols=232 Identities=19% Similarity=0.243 Sum_probs=185.8
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++++|+++.++............+...+++||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEE
Confidence 358899998877532110000001123569999999999999999999999999999999999887 458999999998
Q ss_pred CCcc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCC
Q 000853 730 KVQH------TFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPG 800 (1252)
Q Consensus 730 ~~~~------~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~ 800 (1252)
+... .+++.++||+|++ .+++.+|+.|++.+...... ...+.++.++++.++++.++|.+ ..++.
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~----- 158 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY----- 158 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----
Confidence 6431 2456799999997 57889999999998654331 12344556677889999999943 33433
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
+.+|||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++.++ |.|+|++|||++ .+.+.+|++++|.
T Consensus 159 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~- 236 (331)
T PRK15079 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMY- 236 (331)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 5789999999999999999999999999999999999999999999999765 899999999975 4556799999997
Q ss_pred CcEEEEecCCCC
Q 000853 880 GGRIIYSGPLGQ 891 (1252)
Q Consensus 880 ~G~~~~~g~~~~ 891 (1252)
+|++++.|++++
T Consensus 237 ~G~ive~g~~~~ 248 (331)
T PRK15079 237 LGHAVELGTYDE 248 (331)
T ss_pred CCEEEEEcCHHH
Confidence 589999998654
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=344.69 Aligned_cols=212 Identities=28% Similarity=0.395 Sum_probs=178.9
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 56778877652 2458999999999999999999999999999999999876 45899999998864
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000853 732 QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKR 811 (1252)
Q Consensus 732 ~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqr 811 (1252)
. ..+.++|++|++.+++.+||.||+.+....+. ....+..+++.++++.+++.+..++. +.+||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHH
Confidence 3 23457999999988888999999988654332 22334456788999999998766554 46899999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeec-CcEEEEecCC
Q 000853 812 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKN-GGRIIYSGPL 889 (1252)
Q Consensus 812 v~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~~~~g~~ 889 (1252)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++...+|++++|.+ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999975 56778999999974 5999998875
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=347.18 Aligned_cols=214 Identities=28% Similarity=0.381 Sum_probs=180.0
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 67888887652 2458999999999999999999999999999999999876 45899999998754
Q ss_pred c-----------ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000853 732 Q-----------HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG 800 (1252)
Q Consensus 732 ~-----------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 800 (1252)
. ...++.++|++|++.+++..|++||+.+...... ....+...+++.++++.+|+.+..++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 2 1235678999999988888999999987543211 122334456788999999998766544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
+++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|. +
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~-~ 219 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMD-Q 219 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-C
Confidence 4689999999999999999999999999999999999999999999999877999999999975 5667899999997 5
Q ss_pred cEEEEecCC
Q 000853 881 GRIIYSGPL 889 (1252)
Q Consensus 881 G~~~~~g~~ 889 (1252)
|++++.|++
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 899999885
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=353.37 Aligned_cols=219 Identities=23% Similarity=0.323 Sum_probs=180.9
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++... ...+.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67899988874211 012459999999999999999999999999999999999877 45899999999763
Q ss_pred c-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000853 732 Q-------HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVS 802 (1252)
Q Consensus 732 ~-------~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 802 (1252)
. ...++.+||++|++. .+...||.||+.|+.... ....++..++++++++.++|. +..++. ++
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PF 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cc
Confidence 1 234567999999863 333579999999875432 223444556789999999996 445544 56
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++++|. +|
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~-~G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH-KG 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 89999999999999999999999999999999999999999999999765 899999999975 5677899999997 59
Q ss_pred EEEEecCCC
Q 000853 882 RIIYSGPLG 890 (1252)
Q Consensus 882 ~~~~~g~~~ 890 (1252)
++++.|+++
T Consensus 223 ~i~~~g~~~ 231 (290)
T PRK13634 223 TVFLQGTPR 231 (290)
T ss_pred EEEEECCHH
Confidence 999999864
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=343.15 Aligned_cols=199 Identities=26% Similarity=0.412 Sum_probs=168.0
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc---c-ccceEEEEccCCCCCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---T-FARISGYCEQNDIHSPNI 752 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~~v~q~~~~~~~~ 752 (1252)
+.+++|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 468999999999999999999999999999999999887 4689999999875432 1 245689999999888999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000853 753 TVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTI-ELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 831 (1252)
Q Consensus 753 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPT 831 (1252)
|++||+.+....+. ..+..+.+.++++.+ ++.+..++. +++||||||||++|||||+.+|++|+|||||
T Consensus 91 t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 91 TVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred cHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99999998754331 122334566778877 466555544 4689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCC
Q 000853 832 SGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 832 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 889 (1252)
+|||+.++..+++.|++++++|+|||++||+++ ++...+|++++|. +|++++.|++
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 216 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLE-RGRVVLEGTA 216 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEee-CCeEEEeCCH
Confidence 999999999999999999877899999999975 4667899999997 5899998875
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=347.67 Aligned_cols=219 Identities=26% Similarity=0.334 Sum_probs=178.2
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ .++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhh
Confidence 45677776542 02469999999999999999999999999999999999877 46899999998754
Q ss_pred c------ccccceEEEEccCCCCCCCCCHHHHHHHHHHccC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000853 732 Q------HTFARISGYCEQNDIHSPNITVEESVIFSAWLRL-----SPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG 800 (1252)
Q Consensus 732 ~------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 800 (1252)
. ..+++.++|++|++.+++.+||+||+.+...... ......+..++++.++++.+++.+..+..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 2 1245679999999988889999999976421100 00011223356688899999998766554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
+.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|.
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~- 220 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLK- 220 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEE-
Confidence 4689999999999999999999999999999999999999999999999754 899999999975 4667899999997
Q ss_pred CcEEEEecCCCC
Q 000853 880 GGRIIYSGPLGQ 891 (1252)
Q Consensus 880 ~G~~~~~g~~~~ 891 (1252)
+|++++.|++++
T Consensus 221 ~G~i~~~~~~~~ 232 (243)
T TIGR02315 221 AGEIVFDGAPSE 232 (243)
T ss_pred CCEEEecCCHHH
Confidence 589999998743
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=373.12 Aligned_cols=225 Identities=27% Similarity=0.394 Sum_probs=184.9
Q ss_pred CCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEE
Q 000853 645 LPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR 724 (1252)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~ 724 (1252)
+......++|+||+++|+.++ +..+|+|+||.|++|+.+||+|||||||||++++|.+.+. |.+|+|+
T Consensus 344 ~~~~~g~ief~nV~FsYPsRp----------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~ 411 (1228)
T KOG0055|consen 344 LSSIKGEIEFRNVCFSYPSRP----------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVL 411 (1228)
T ss_pred ccccccceEEEEEEecCCCCC----------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEE
Confidence 334456799999999997653 4579999999999999999999999999999999999988 5699999
Q ss_pred ECCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHH---HHHHHHcCCcccccccccC
Q 000853 725 IGGYPKVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFV---NEVLQTIELDGIKYSLVGL 798 (1252)
Q Consensus 725 ~~g~~~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~g~ 798 (1252)
+||.++.. +..|..+|.|.|+|.+ ...|++||+.|+. ++.+.++..+.. +..--...|.+..++.+|.
T Consensus 412 idG~di~~~~~~~lr~~iglV~QePvl-F~~tI~eNI~~G~-----~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge 485 (1228)
T KOG0055|consen 412 IDGEDIRNLNLKWLRSQIGLVSQEPVL-FATTIRENIRYGK-----PDATREEIEEAAKAANAHDFILKLPDGYDTLVGE 485 (1228)
T ss_pred EcCccchhcchHHHHhhcCeeeechhh-hcccHHHHHhcCC-----CcccHHHHHHHHHHccHHHHHHhhHHhhcccccC
Confidence 99998653 4578899999999966 5689999998852 233333222111 1111223456677888988
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee
Q 000853 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 799 ~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
.++ +||||||||++|||||+++|+||+||||||+||+++++.++++|++..+ |+|.|+++|+.+ ..+.+|++++|.
T Consensus 486 ~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~-grTTivVaHRLS--tIrnaD~I~v~~ 561 (1228)
T KOG0055|consen 486 RGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK-GRTTIVVAHRLS--TIRNADKIAVME 561 (1228)
T ss_pred CCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc-CCeEEEEeeehh--hhhccCEEEEEE
Confidence 765 5999999999999999999999999999999999999999999998764 999999999875 456799999997
Q ss_pred cCcEEEEecCCCCc
Q 000853 879 NGGRIIYSGPLGQH 892 (1252)
Q Consensus 879 ~~G~~~~~g~~~~~ 892 (1252)
+ |+|++.|+.+|+
T Consensus 562 ~-G~IvE~G~h~EL 574 (1228)
T KOG0055|consen 562 E-GKIVEQGTHDEL 574 (1228)
T ss_pred C-CEEEEecCHHHH
Confidence 5 999999998764
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=352.02 Aligned_cols=220 Identities=28% Similarity=0.357 Sum_probs=181.3
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++... ...+.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.+||.++.
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67889988874210 011359999999999999999999999999999999999887 45899999999863
Q ss_pred c-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000853 732 Q-------HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVS 802 (1252)
Q Consensus 732 ~-------~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 802 (1252)
. ...++.+||++|++. .+...||.||+.|..... ....++.++++.++++.++|. +..++. ++
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 143 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----PF 143 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----cc
Confidence 1 234667999999862 333469999999875432 223455567789999999995 344433 57
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~-~G~ 221 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLE-KGH 221 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-CCE
Confidence 89999999999999999999999999999999999999999999999877999999999975 4667899999997 589
Q ss_pred EEEecCCCC
Q 000853 883 IIYSGPLGQ 891 (1252)
Q Consensus 883 ~~~~g~~~~ 891 (1252)
+++.|++++
T Consensus 222 i~~~g~~~~ 230 (288)
T PRK13643 222 IISCGTPSD 230 (288)
T ss_pred EEEECCHHH
Confidence 999999754
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=345.24 Aligned_cols=202 Identities=27% Similarity=0.377 Sum_probs=172.7
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNIT 753 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~~t 753 (1252)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.+||.++.. ...++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 458999999999999999999999999999999999877 458999999987542 234567899999998888999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000853 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG--IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 831 (1252)
Q Consensus 754 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPT 831 (1252)
++||+.+....+. ...+...+.+.++++.+++.+ ..++. +++||||||||++|||||+.+|++|+|||||
T Consensus 92 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRY-----PHELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999988754432 233444567889999999985 44443 4689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 832 SGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 832 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|+++
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 221 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMK-NGEIVQVGTPD 221 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEecCHH
Confidence 999999999999999999864 899999999975 5677899999997 58999998863
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=354.86 Aligned_cols=220 Identities=25% Similarity=0.354 Sum_probs=181.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++... ...+.+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 489999998874211 012459999999999999999999999999999999999887 4589999999875
Q ss_pred Cc-------------------ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-
Q 000853 731 VQ-------------------HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD- 789 (1252)
Q Consensus 731 ~~-------------------~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~- 789 (1252)
.. ..+++.+||++|++. .+...|++||+.|+.... ..+.++..+++.++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~ 167 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDD 167 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCCh
Confidence 32 134678999999973 233469999998875322 223445556788999999996
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHH
Q 000853 790 GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFE 869 (1252)
Q Consensus 790 ~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~ 869 (1252)
+..++. +.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+
T Consensus 168 ~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~ 241 (320)
T PRK13631 168 SYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLE 241 (320)
T ss_pred hHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHH
Confidence 444433 5689999999999999999999999999999999999999999999999877999999999865 4667
Q ss_pred HhcceeeeecCcEEEEecCCC
Q 000853 870 AFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 870 ~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
.+|++++|.+ |++++.|+++
T Consensus 242 ~adri~vl~~-G~i~~~g~~~ 261 (320)
T PRK13631 242 VADEVIVMDK-GKILKTGTPY 261 (320)
T ss_pred hCCEEEEEEC-CEEEEeCCHH
Confidence 8999999974 8999999874
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=307.15 Aligned_cols=200 Identities=28% Similarity=0.409 Sum_probs=177.7
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 756 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e 756 (1252)
+.+|+|+|++|.+||.++++||||||||||||+++|..+ |..|+|.+||.++....- .-|.|+|++.++|.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 459999999999999999999999999999999999988 558999999998754322 2399999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000853 757 SVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 836 (1252)
Q Consensus 757 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~ 836 (1252)
|+.|+.++++ .++.++.+++.+++..+||.+..++. +-+|||||||||.|||||..+|++|+||||.+.||.
T Consensus 94 NvafgL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~-----i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLRG---IEKAQRREIAHQMLALVGLEGAEHKY-----IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHhCcccccccc-----eEeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 9999999885 45678888999999999999887765 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeec-CcEEEEecCC
Q 000853 837 RAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKN-GGRIIYSGPL 889 (1252)
Q Consensus 837 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~~~~g~~ 889 (1252)
-+++.++++|-++.+ .|+.++++||+.+ |..-.++++++|+- .|+|+..-++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999875 5999999999976 45557899999973 2788888776
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=337.54 Aligned_cols=206 Identities=27% Similarity=0.361 Sum_probs=173.3
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ +++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 56778877652 12469999999999999999999999999999999999876 45899999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 QH------TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~~------~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
.. .+++.++|++|++.+++.+|+.||+.+....+. ...+..+++++++++.+++.+..++. +.+||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAF-----PEQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCC
Confidence 21 245679999999988889999999998754432 22334456788999999998765554 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++...+|++++|.+ |
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G 213 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDD-G 213 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecC-C
Confidence 99999999999999999999999999999999999999999999777999999999975 56677899999975 5
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=348.28 Aligned_cols=217 Identities=21% Similarity=0.307 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 478889887652 2458999999999999999999999999999999999877 4589999999875
Q ss_pred Ccc------cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000853 731 VQH------TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGL 804 (1252)
Q Consensus 731 ~~~------~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~l 804 (1252)
... ..++.++|++|++.+++.+|+.||+.+...... ....+..++++.++++.+++.+..+.. +..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhC
Confidence 421 135578999999988888999999988643221 122333445678899999998776654 4689
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 805 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 805 SgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~-~G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVA-DKKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999765 899999999975 5667899999997 5899
Q ss_pred EEecCCCC
Q 000853 884 IYSGPLGQ 891 (1252)
Q Consensus 884 ~~~g~~~~ 891 (1252)
++.|++++
T Consensus 223 ~~~g~~~~ 230 (269)
T PRK11831 223 VAHGSAQA 230 (269)
T ss_pred EEeCCHHH
Confidence 99998643
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=348.37 Aligned_cols=216 Identities=26% Similarity=0.336 Sum_probs=181.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYKD------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeCC------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 3788899886631 2358999999999999999999999999999999999877 4589999999886
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQ---HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
.. ...++.+||++|++. .++..||.||+.|..... ....++.++++.++++.++|.+..++. +..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKP-----PYHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----hhhCCH
Confidence 43 234567999999973 445689999999864322 223344456788999999998776665 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~-~G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLK-EGRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999975 4567899999997 5899999
Q ss_pred cCCC
Q 000853 887 GPLG 890 (1252)
Q Consensus 887 g~~~ 890 (1252)
|+++
T Consensus 220 g~~~ 223 (274)
T PRK13647 220 GDKS 223 (274)
T ss_pred CCHH
Confidence 9863
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=346.12 Aligned_cols=203 Identities=23% Similarity=0.282 Sum_probs=154.4
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..+.+.+|.+.++. ++-+++.++++.++.-+..+++|+||+||||++|++.|... +..|.+-+.+
T Consensus 361 p~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~-- 425 (582)
T KOG0062|consen 361 PNLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP-- 425 (582)
T ss_pred CeeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc--
Confidence 35777777765532 11268899999999999999999999999999999999766 3477776654
Q ss_pred CCcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 730 KVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 730 ~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
|.+++|..|...-+..+.|.+-- +..+.+ +... ++.++..+..+||....- ...+.+||||||
T Consensus 426 ------r~ri~~f~Qhhvd~l~~~v~~vd-~~~~~~--pG~~----~ee~r~hl~~~Gl~g~la----~~si~~LSGGQK 488 (582)
T KOG0062|consen 426 ------RLRIKYFAQHHVDFLDKNVNAVD-FMEKSF--PGKT----EEEIRRHLGSFGLSGELA----LQSIASLSGGQK 488 (582)
T ss_pred ------cceecchhHhhhhHHHHHhHHHH-HHHHhC--CCCC----HHHHHHHHHhcCCCchhh----hccccccCCcch
Confidence 34789999987655556665533 333333 2222 344678899999976432 222578999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEE-EEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI-IYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~-~~~g~ 888 (1252)
-||++|.....+|.+|+|||||+.||..+-..+-+.|++. +..||++||+.+ -+-..|+.+.+..+ |++ -.+|.
T Consensus 489 srvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~-g~vt~ieg~ 563 (582)
T KOG0062|consen 489 SRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVED-GKVTPIEGG 563 (582)
T ss_pred hHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcC-CcEEeeecc
Confidence 9999999999999999999999999999999999999987 457999999854 35667888888875 555 34554
Q ss_pred C
Q 000853 889 L 889 (1252)
Q Consensus 889 ~ 889 (1252)
.
T Consensus 564 ~ 564 (582)
T KOG0062|consen 564 I 564 (582)
T ss_pred H
Confidence 3
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=337.51 Aligned_cols=206 Identities=26% Similarity=0.337 Sum_probs=172.8
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYPN------------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeCC------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 45677765521 2458999999999999999999999999999999999876 458999999987642
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 733 H------TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 733 ~------~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
. .+++.++|++|++.+++.+|++||+.+....+. ...++.+++++++++.+++.+..++. +.+|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRAL-----PAELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCH
Confidence 1 245679999999998899999999998755432 22344456788999999998766554 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|.+ |+
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999999999999999999999999999777999999999975 45567899999975 65
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=322.65 Aligned_cols=192 Identities=27% Similarity=0.370 Sum_probs=167.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
+++++|||||||||+||+|.++++|+ +|+|.+||+++.+.. .|+.+|||-|.-.+||++||.|||.....+.+.
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w 105 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGW 105 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCC
Confidence 47899999999999999999999998 999999999987755 368899999999999999999999987665431
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcc--cccccccCCcccccCccccchhHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDI--CADTIVGDPMRRGVSGGQKKRLTT 155 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~~t~vg~~~~rgLSGGqkqRvsi 155 (1252)
. ++ +.+.+++++|+.+||+. ..+....+ |||||+|||.+
T Consensus 106 ~------k~----------------------------~i~~r~~ELl~lvgL~p~~~~~RyP~e-----LSGGQQQRVGv 146 (309)
T COG1125 106 D------KE----------------------------RIKKRADELLDLVGLDPSEYADRYPHE-----LSGGQQQRVGV 146 (309)
T ss_pred C------HH----------------------------HHHHHHHHHHHHhCCCHHHHhhcCchh-----cCcchhhHHHH
Confidence 1 00 11345789999999974 45666655 99999999999
Q ss_pred HHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 156 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
||||+.+|+|+++|||+++|||.++.++++-++++.+..++|+++ ++|..+|+++++|||++|++|+++.+++++++..
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivf-VTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVF-VTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEE-EecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999999998887777655 6788999999999999999999999999999864
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=342.17 Aligned_cols=206 Identities=22% Similarity=0.311 Sum_probs=176.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 488999988763 2468999999999999999999999999999999999877 4589999999764
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
. .+++.++|++|++.+++.+||+||+.+.. + . ..++++.++++.++|.+..+.. +.+|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~--~---~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGL--K---G----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhcc--c---c----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 2 34567899999998888899999998742 1 1 1234578899999998766554 4689999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCC
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 889 (1252)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++...+|++++|. +|++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~-~G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIE-EGKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999975 4667899999997 4899998875
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=339.56 Aligned_cols=212 Identities=27% Similarity=0.422 Sum_probs=177.2
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 46677776552 2458999999999999999999999999999999999877 45899999998754
Q ss_pred cc--cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 732 QH--TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 732 ~~--~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
.. ..++.++|++|++.+++.+|++||+.+....+ ....++..+.+.++++.+|+.+..++. +.+||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDK-----VRELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHH
Confidence 21 22357899999998888999999998765443 123334456688999999998766554 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++ ..+|++++|. +|++++.|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~-~G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLH-RGRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEe-CCeEEEeCC
Confidence 999999999999999999999999999999999999999975 5899999999975 34 4599999997 589999887
Q ss_pred C
Q 000853 889 L 889 (1252)
Q Consensus 889 ~ 889 (1252)
+
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 5
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=350.32 Aligned_cols=220 Identities=24% Similarity=0.379 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++... ...+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 378899988874211 012469999999999999999999999999999999999887 4589999999886
Q ss_pred Cc-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000853 731 VQ-------HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGV 801 (1252)
Q Consensus 731 ~~-------~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 801 (1252)
.. ...++.+||++|++. .+...||.||+.|..... ....++..+++.++++.+||. +..++. +
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----P 143 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 32 135678999999862 233459999999875432 233445566789999999996 555543 5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|. +
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~-~ 221 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMK-E 221 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-C
Confidence 68999999999999999999999999999999999999999999999975 4899999999975 4667899999997 5
Q ss_pred cEEEEecCCC
Q 000853 881 GRIIYSGPLG 890 (1252)
Q Consensus 881 G~~~~~g~~~ 890 (1252)
|++++.|++.
T Consensus 222 G~i~~~g~~~ 231 (286)
T PRK13646 222 GSIVSQTSPK 231 (286)
T ss_pred CEEEEECCHH
Confidence 8999999864
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=349.92 Aligned_cols=217 Identities=24% Similarity=0.333 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++.. +.+.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 47889998876421 12358999999999999999999999999999999999887 4589999999986
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQ---HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
.. ...++.+||++|++. .++..||+||+.|..... ....++..++++++++.+||.+..+.. +.+|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKERE-----PARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234567999999973 667889999999875432 234445566789999999998776655 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..+|++++|. +|+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~-~G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMK-NGQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999975 34 6799999997 589999
Q ss_pred ecCCC
Q 000853 886 SGPLG 890 (1252)
Q Consensus 886 ~g~~~ 890 (1252)
.|+++
T Consensus 221 ~g~~~ 225 (279)
T PRK13650 221 TSTPR 225 (279)
T ss_pred ECCHH
Confidence 99864
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=335.83 Aligned_cols=208 Identities=32% Similarity=0.485 Sum_probs=174.2
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+++|+||++++| +++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCcccc
Confidence 4677776552 245899999999999 999999999999999999999877 458999999987542
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 733 --HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 733 --~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
..+++.++|++|++.+++.+|+.||+.+....+. ...++..+.++++++.+++.+..++. +.+|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHH
Confidence 2345678999999988889999999998765432 22233456688999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+|++++|. +|++++.|
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~-~g~i~~~g 211 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 99999999999999999999999999999999999999976 599999999975 4556789999997 48888765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=342.71 Aligned_cols=215 Identities=23% Similarity=0.353 Sum_probs=180.6
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67778877652 2469999999999999999999999999999999999876 45899999998764
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 732 QH----TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 732 ~~----~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
.. ..++.++|++|++.+++.+|+.||+.+....+. ....++.+++++++++.+++.+..+.. ++.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHH
Confidence 31 135679999999988888999999987643321 122334456788999999998765544 4689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|. +|++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~-~G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVS-QGHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEe-CCeEEeeC
Confidence 999999999999999999999999999999999999999999877999999999975 5778899999997 58999999
Q ss_pred CCC
Q 000853 888 PLG 890 (1252)
Q Consensus 888 ~~~ 890 (1252)
+++
T Consensus 220 ~~~ 222 (241)
T PRK10895 220 TPT 222 (241)
T ss_pred CHH
Confidence 864
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=333.80 Aligned_cols=226 Identities=22% Similarity=0.327 Sum_probs=185.5
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC-C--CeEEEEEEECCe
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT-G--GIIEGDIRIGGY 728 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~-~--~~~~G~i~~~g~ 728 (1252)
++.+|++.++.... +...+++||||++++||++||+|.|||||||+.++|.|.++ + ...+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~~---------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTDA---------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecCC---------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 46677777665421 23569999999999999999999999999999999999876 2 246799999999
Q ss_pred eCCc---c---c-ccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000853 729 PKVQ---H---T-FARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP 799 (1252)
Q Consensus 729 ~~~~---~---~-~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 799 (1252)
++.. + + +.+.+++++|++ .+.|.+|+.+.+.-....+.... ..++..+++.++|+.+|+.+..... +.
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~--~~ 149 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRL--KS 149 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHH--hh
Confidence 7532 1 1 235799999997 56788999998876655432111 3456677899999999998753222 33
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeee
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
.+.+|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++.+ .|.|+|++|||+. -+.+.+|++.||.
T Consensus 150 YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY 228 (316)
T COG0444 150 YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY 228 (316)
T ss_pred CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE
Confidence 4789999999999999999999999999999999999999999999999986 5999999999986 4788999999998
Q ss_pred cCcEEEEecCCCC
Q 000853 879 NGGRIIYSGPLGQ 891 (1252)
Q Consensus 879 ~~G~~~~~g~~~~ 891 (1252)
.|++|+.|++++
T Consensus 229 -aG~iVE~g~~~~ 240 (316)
T COG0444 229 -AGRIVEEGPVEE 240 (316)
T ss_pred -CcEEEEeCCHHH
Confidence 599999999754
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=342.24 Aligned_cols=215 Identities=26% Similarity=0.342 Sum_probs=177.9
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCe---EEEEEEECCe
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI---IEGDIRIGGY 728 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~---~~G~i~~~g~ 728 (1252)
++++|+++.++ ++.+++|+||+|++||+++|+|+||||||||+++|+|..++.+ .+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56788877653 2358999999999999999999999999999999999876321 2899999998
Q ss_pred eCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCC
Q 000853 729 PKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD----GIKYSLVGLP 799 (1252)
Q Consensus 729 ~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~g~~ 799 (1252)
++.. ...++.++|++|++.+++ .|++||+.+....+. ....++..+.+.++++.+++. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 234567999999988887 999999998754432 122344456788999999997 444433
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
+++||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~- 217 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFY- 217 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEE-
Confidence 568999999999999999999999999999999999999999999999977 589999999975 4667899999997
Q ss_pred CcEEEEecCCC
Q 000853 880 GGRIIYSGPLG 890 (1252)
Q Consensus 880 ~G~~~~~g~~~ 890 (1252)
+|++++.|+++
T Consensus 218 ~G~i~~~~~~~ 228 (247)
T TIGR00972 218 DGELVEYGPTE 228 (247)
T ss_pred CCEEEEeCCHH
Confidence 48999999863
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=335.97 Aligned_cols=209 Identities=24% Similarity=0.297 Sum_probs=174.6
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 56778877652 12468999999999999999999999999999999999877 46899999998753
Q ss_pred c---c---cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 Q---H---TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~---~---~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
. . .+++.++|++|++.+++..|++||+.+....+. ...++..++++++++.+++.+..++. +..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG---ASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----chhCC
Confidence 2 1 145678999999988889999999988754431 23334455678899999998766554 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++...+|++++|.+ |+++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 99999999999999999999999999999999999999999999777899999999975 46667899999975 7764
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=348.38 Aligned_cols=217 Identities=27% Similarity=0.369 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYSD------------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeCC------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 5889999987631 2459999999999999999999999999999999999877 4689999999886
Q ss_pred Cc-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000853 731 VQ-----HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGL 804 (1252)
Q Consensus 731 ~~-----~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~l 804 (1252)
.. ..+++.+||++|++. .+...|++||+.+..... ..+.++..++++++++.++|.+..++. ++.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 31 235677999999974 335689999998865322 223444456789999999998776655 4689
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 805 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 805 SgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...||++++|.+ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 899999999975 45568999999975 899
Q ss_pred EEecCCCC
Q 000853 884 IYSGPLGQ 891 (1252)
Q Consensus 884 ~~~g~~~~ 891 (1252)
++.|++++
T Consensus 221 ~~~g~~~~ 228 (283)
T PRK13636 221 ILQGNPKE 228 (283)
T ss_pred EEeCCHHH
Confidence 99998743
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=359.79 Aligned_cols=204 Identities=23% Similarity=0.303 Sum_probs=175.9
Q ss_pred ccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc---c----ccceEEEEccCCCC
Q 000853 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---T----FARISGYCEQNDIH 748 (1252)
Q Consensus 676 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~~ 748 (1252)
...+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.+||.++... . .++.+||++|++.+
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 3458999999999999999999999999999999999887 4589999999986431 1 23579999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000853 749 SPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 828 (1252)
Q Consensus 749 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlD 828 (1252)
++.+||+||+.+....+. ...++.++++.++++.++|.+..++. +++|||||||||+|||||+.+|++||||
T Consensus 118 ~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999999999999865442 23344556788999999998776655 4689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 829 EPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 829 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
|||+|||+.++..+++.|+++.+ .|+|||++||+++ ++...+|++++|. +|++++.|++++
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~-~G~i~~~g~~~~ 251 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQ-NGEVVQVGTPDE 251 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEE-CCEEEecCCHHH
Confidence 99999999999999999999975 4899999999975 5667899999997 589999998654
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=336.15 Aligned_cols=206 Identities=26% Similarity=0.365 Sum_probs=172.4
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+|+++||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 4677776652 2458999999999999999999999999999999999877 458999999987632
Q ss_pred -----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 733 -----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 733 -----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
..+++.++|++|++.+++.+|+.||+.+...... ....++..+++.++++.+++.+..++. +.+||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHH
Confidence 2346679999999988888999999988643111 122334456788999999998766554 4689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |+
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 999999999999999999999999999999999999999999877899999999975 56678999999975 65
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=309.69 Aligned_cols=218 Identities=26% Similarity=0.401 Sum_probs=181.6
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++.+|++|+.. .+.+|++||++++|||++||+||||||||||||.|+|... +.+|++.+||.+..
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChh
Confidence 56678888763 4679999999999999999999999999999999999887 45899999999865
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 732 Q---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 732 ~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
. .+..+..+..||+..+-+..||+|-+.++..-.. ......+..+.++++|...++.+.+.+. ...|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~-~g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHR-SGREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccc-cCCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchH
Confidence 3 3445566999999988788999999998753221 1122234455688899999998887654 36899999
Q ss_pred HHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 809 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 809 rqrv~ia~al~~------~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
||||.+||.|+. ++++|+||||||.||...+..++++.++++++|..|+++-||.+. ...++|++++|. +|+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~-~Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLH-QGR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeee-CCe
Confidence 999999999986 346899999999999999999999999999999999999999875 567788888887 599
Q ss_pred EEEecCCCCc
Q 000853 883 IIYSGPLGQH 892 (1252)
Q Consensus 883 ~~~~g~~~~~ 892 (1252)
++..|++.+.
T Consensus 219 v~a~g~p~~v 228 (259)
T COG4559 219 VIASGSPQDV 228 (259)
T ss_pred EeecCCHHHh
Confidence 9999998653
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=343.54 Aligned_cols=215 Identities=22% Similarity=0.287 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 378889887663 2459999999999999999999999999999999999877 4589999999875
Q ss_pred Cc----------------ccccceEEEEccCCCCCCCCCHHHHHHHHHH-ccCCCCCCHHHHHHHHHHHHHHcCCcccc-
Q 000853 731 VQ----------------HTFARISGYCEQNDIHSPNITVEESVIFSAW-LRLSPEIDLKTKAEFVNEVLQTIELDGIK- 792 (1252)
Q Consensus 731 ~~----------------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~-l~~~~~~~~~~~~~~~~~~l~~~~l~~~~- 792 (1252)
.. ..+++.++|++|++.+++.+|++||+.++.. .+ ....+..++++.++++.+|+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 31 1345679999999998888999999987542 22 123344456788999999997653
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhc
Q 000853 793 YSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFD 872 (1252)
Q Consensus 793 ~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 872 (1252)
+.. +.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...||
T Consensus 147 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d 220 (257)
T PRK10619 147 GKY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 220 (257)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 332 4689999999999999999999999999999999999999999999999877999999999975 4566789
Q ss_pred ceeeeecCcEEEEecCCC
Q 000853 873 DLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 873 ~~~~l~~~G~~~~~g~~~ 890 (1252)
++++|. +|++++.|+.+
T Consensus 221 ~i~~l~-~G~i~~~~~~~ 237 (257)
T PRK10619 221 HVIFLH-QGKIEEEGAPE 237 (257)
T ss_pred EEEEEE-CCEEEEeCCHH
Confidence 999997 48999998863
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=338.17 Aligned_cols=217 Identities=24% Similarity=0.323 Sum_probs=172.1
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++.. .....+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5677887765311 001258999999999999999999999999999999999876 45899999998764
Q ss_pred c------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000853 732 Q------HTFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVS 802 (1252)
Q Consensus 732 ~------~~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 802 (1252)
. ..+++.++|++|++ .+++.+|++||+.+........ ...+..++.++++++.+++. +..+.. +.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRY-----PH 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCC-----ch
Confidence 3 23456799999998 4567899999998865433211 11111122235788999985 444443 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMY-AG 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEe-CC
Confidence 89999999999999999999999999999999999999999999999865 899999999975 4556899999997 58
Q ss_pred EEEEec
Q 000853 882 RIIYSG 887 (1252)
Q Consensus 882 ~~~~~g 887 (1252)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 887654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=348.50 Aligned_cols=220 Identities=25% Similarity=0.334 Sum_probs=180.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 367888887763210 002469999999999999999999999999999999999887 4699999999876
Q ss_pred Cc-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000853 731 VQ-------HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGV 801 (1252)
Q Consensus 731 ~~-------~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 801 (1252)
.. ...++.+||++|++. .+..+||.||+.+....+ ....++..++++++++.++|. +..++. +
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----P 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----c
Confidence 32 124567999999973 333689999998865432 123445556789999999996 455554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|. +|
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~-~G 221 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLE-HG 221 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 689999999999999999999999999999999999999999999999877999999999975 4667899999997 58
Q ss_pred EEEEecCCC
Q 000853 882 RIIYSGPLG 890 (1252)
Q Consensus 882 ~~~~~g~~~ 890 (1252)
++++.|+++
T Consensus 222 ~i~~~g~~~ 230 (287)
T PRK13641 222 KLIKHASPK 230 (287)
T ss_pred EEEEeCCHH
Confidence 999999864
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=334.52 Aligned_cols=211 Identities=24% Similarity=0.378 Sum_probs=172.5
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 4677887766321 012469999999999999999999999999999999999877 45899999998754
Q ss_pred cc---c---cc-ceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000853 732 QH---T---FA-RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGL 804 (1252)
Q Consensus 732 ~~---~---~~-~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~l 804 (1252)
.. . ++ +.++|++|++.+++.+|++||+.+....+. ....+..+++.++++.+|+.+..++. +..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHR-----PSEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhC
Confidence 21 1 22 568999999988888999999988654331 12233445678999999998766554 4689
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 805 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 805 SgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ..+.+|++++|.+ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~--~~~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE--LAKKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEEEeC-CEe
Confidence 999999999999999999999999999999999999999999999764 899999999975 3456899999974 776
Q ss_pred E
Q 000853 884 I 884 (1252)
Q Consensus 884 ~ 884 (1252)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 4
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=330.23 Aligned_cols=203 Identities=24% Similarity=0.301 Sum_probs=183.5
Q ss_pred ccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc---c---c-ccceEEEEccCCCCCC
Q 000853 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---H---T-FARISGYCEQNDIHSP 750 (1252)
Q Consensus 678 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~---~-~~~~~~~v~q~~~~~~ 750 (1252)
.-++|+||+|+.||++.|||-||||||||+++|.++.. |+.|+|+++|.++.. . . .++.+++|+|+..++|
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 45889999999999999999999999999999999887 569999999998643 1 2 3567899999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000853 751 NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 830 (1252)
Q Consensus 751 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEP 830 (1252)
..||.||..|+..+++ .+++++++++.+.|+.+||.+..+.. +++|||||||||.+||||+.+|+||++|||
T Consensus 120 hrtVl~Nv~fGLev~G---v~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 120 HRTVLENVAFGLEVQG---VPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred chhHhhhhhcceeecC---CCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 9999999999988874 45678889999999999999998876 679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCc
Q 000853 831 TSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 831 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
+|.|||--+.++++-|.++.++ ++|||++|||.+ |....-||+.+|. +|+++..|++++.
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~eI 252 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPEEI 252 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHHHH
Confidence 9999999999999999998755 899999999987 6778889999996 6999999999764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=299.09 Aligned_cols=198 Identities=26% Similarity=0.391 Sum_probs=172.5
Q ss_pred cccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc------c-ccceEEEEccCCC
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH------T-FARISGYCEQNDI 747 (1252)
Q Consensus 675 ~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~-~~~~~~~v~q~~~ 747 (1252)
+...||++|++.|++||.+||+|||||||||||-+|+|+.. +.+|+|.+.|++.... . ..+.+|+|+|...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 45679999999999999999999999999999999999877 4599999999985431 1 3467999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000853 748 HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 827 (1252)
Q Consensus 748 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illl 827 (1252)
+.|++|..||+.....++.... .+..+...+.|+.+||.+..+.. +.+|||||+|||+||||+...|+|||.
T Consensus 99 Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~vGLg~Rl~Hy-----P~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGESS---ADSRAGAKALLEAVGLGKRLTHY-----PAQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHhCcccccccC-----ccccCchHHHHHHHHHHhcCCCCEEec
Confidence 9999999999999988886422 23345578899999998876654 579999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 828 DEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 828 DEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
||||-+||..+...|.+++-.+.+ .|.|.|++|||| .+...|+|.+-|.+ |+++.
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~-G~l~~ 226 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRS-GRLVE 226 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeec-ceecc
Confidence 999999999999999999999875 499999999997 46789999999975 88875
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=339.94 Aligned_cols=214 Identities=25% Similarity=0.345 Sum_probs=179.3
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 67888887653 2459999999999999999999999999999999999876 46899999998752
Q ss_pred c---------ccccceEEEEccCCCCCCCCCHHHHHHHH-HHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000853 732 Q---------HTFARISGYCEQNDIHSPNITVEESVIFS-AWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801 (1252)
Q Consensus 732 ~---------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 801 (1252)
. ...++.++|++|++.+++.+|+.||+.+. ...+ ....++..+++.+.++.+|+.+..+.. +
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~ 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----P 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----h
Confidence 0 12456789999999988899999999753 2222 122333456688999999998766654 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
++||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~-~g 217 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYME-NG 217 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEE-CC
Confidence 689999999999999999999999999999999999999999999999877999999999975 4567799999997 58
Q ss_pred EEEEecCCC
Q 000853 882 RIIYSGPLG 890 (1252)
Q Consensus 882 ~~~~~g~~~ 890 (1252)
++++.|+++
T Consensus 218 ~i~~~~~~~ 226 (242)
T PRK11124 218 HIVEQGDAS 226 (242)
T ss_pred EEEEeCCHH
Confidence 999999864
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=339.63 Aligned_cols=214 Identities=21% Similarity=0.346 Sum_probs=178.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 478899887652 2469999999999999999999999999999999999877 4689999999876
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCC
Q 000853 731 VQH----TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTI-ELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 731 ~~~----~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~g~~~~~~lS 805 (1252)
... ..++.++|++|++.+++.+||.||+.+..... ..++..+.++++++.+ ++.+..+.. ++.||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 432 23567999999998888899999998864221 1122334566777777 465544443 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999999877999999999975 57788999999974 89999
Q ss_pred ecCCCC
Q 000853 886 SGPLGQ 891 (1252)
Q Consensus 886 ~g~~~~ 891 (1252)
.|++++
T Consensus 218 ~~~~~~ 223 (237)
T PRK11614 218 EDTGDA 223 (237)
T ss_pred eCCHHH
Confidence 998754
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=333.38 Aligned_cols=198 Identities=24% Similarity=0.374 Sum_probs=170.9
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 756 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e 756 (1252)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... ++.++|++|++.+++.+|++|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 468999999999999999999999999999999999876 56899999998764332 246899999998888899999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000853 757 SVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 836 (1252)
Q Consensus 757 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~ 836 (1252)
|+.+....+. .. ++++.++++.+++.+..+.. +..||||||||++||||++.+|++|+|||||+|||+
T Consensus 90 ~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 90 NLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 (223)
T ss_pred HHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH
Confidence 9987654432 11 23577889999998766654 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 837 RAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 837 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
.++..+++.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.|++.+
T Consensus 158 ~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~~ 210 (223)
T TIGR03740 158 IGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIIS-EGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEe-CCEEEEecChhh
Confidence 9999999999999877899999999975 4667899999997 589999998754
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=334.32 Aligned_cols=193 Identities=28% Similarity=0.415 Sum_probs=163.0
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCC-CCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDI-HSPNI 752 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~-~~~~~ 752 (1252)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.++.. ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 469999999999999999999999999999999999877 458999999987542 234567899999974 35678
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000853 753 TVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 832 (1252)
Q Consensus 753 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTs 832 (1252)
|++||+.+....+. ......++++.++++.+++.+..++. +..||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENLG---LPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999988654321 22333445688899999998665554 46899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 833 GLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 833 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.+ |
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLED-G 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-C
Confidence 99999999999999999877999999999975 45667999999975 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=356.91 Aligned_cols=216 Identities=27% Similarity=0.464 Sum_probs=182.7
Q ss_pred CCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECC
Q 000853 648 EPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG 727 (1252)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g 727 (1252)
+++.+..+|+++.++. ++++++|+|+++++|+.+||+|+||||||||+++|+|..+ +++|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECC
Confidence 4566777899988753 2379999999999999999999999999999999999987 4699999999
Q ss_pred eeCC---cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc------cccccC
Q 000853 728 YPKV---QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIK------YSLVGL 798 (1252)
Q Consensus 728 ~~~~---~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~g~ 798 (1252)
.+.. ...++++++||+|+|.+++ -|++||+.++. ++.+ ++.+.++++..+|.+.. |+.+|+
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8753 4578999999999998765 59999998752 1222 34567788888776554 455554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee
Q 000853 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 799 ~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
. .++|||||+|||++||||+++++++++||||++||.++++.|++.|.++++ ++|||++||++ .....+|+|++|+
T Consensus 453 ~-G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl--~~~~~~D~I~vld 528 (559)
T COG4988 453 G-GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRL--EDAADADRIVVLD 528 (559)
T ss_pred C-CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcCh--HHHhcCCEEEEec
Confidence 4 478999999999999999999999999999999999999999999999987 69999999985 4567899999997
Q ss_pred cCcEEEEecCCCCc
Q 000853 879 NGGRIIYSGPLGQH 892 (1252)
Q Consensus 879 ~~G~~~~~g~~~~~ 892 (1252)
+|++++.|..++.
T Consensus 529 -~G~l~~~g~~~~L 541 (559)
T COG4988 529 -NGRLVEQGTHEEL 541 (559)
T ss_pred -CCceeccCCHHHH
Confidence 5999999997654
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=344.66 Aligned_cols=216 Identities=27% Similarity=0.380 Sum_probs=181.2
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++. ++.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 678888876631 2358999999999999999999999999999999999877 56999999998764
Q ss_pred c---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 732 Q---HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 732 ~---~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
. ...++.++|++|++. .+...||.||+.+..... ....+..+++++++++.++|.+..++. ++.||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHH
Confidence 3 234567899999974 344689999998765432 233444556788999999998776665 4689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999865 899999999975 56678999999974 899999
Q ss_pred cCCCC
Q 000853 887 GPLGQ 891 (1252)
Q Consensus 887 g~~~~ 891 (1252)
|++++
T Consensus 220 g~~~~ 224 (277)
T PRK13652 220 GTVEE 224 (277)
T ss_pred CCHHH
Confidence 98743
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=330.52 Aligned_cols=190 Identities=26% Similarity=0.343 Sum_probs=165.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+.+|+|+||||||||+++|.++-.|+ +|+|.++|.+++... .|+.+|+++|+..++...||.||+.|..++
T Consensus 34 I~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLei 110 (339)
T COG1135 34 IFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLEL 110 (339)
T ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhh
Confidence 46899999999999999999999998 999999998876543 257799999999999999999999998876
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
.+.. ++ +...++.++|+..||++..+....+ |||||||||+
T Consensus 111 ag~~------k~----------------------------ei~~RV~elLelVgL~dk~~~yP~q-----LSGGQKQRVa 151 (339)
T COG1135 111 AGVP------KA----------------------------EIKQRVAELLELVGLSDKADRYPAQ-----LSGGQKQRVA 151 (339)
T ss_pred cCCC------HH----------------------------HHHHHHHHHHHHcCChhhhccCchh-----cCcchhhHHH
Confidence 5321 00 1123578899999999999988766 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
|||||+.+|+||++|||||+|||.+...|.+.|+++.++.|-|+++. +|-++-+.+.||||.||++|++++.|+..++
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlI-THEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLI-THEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEE-echHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 99999999999999999999999999999999999998877776654 5556678889999999999999999998876
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=341.28 Aligned_cols=219 Identities=24% Similarity=0.295 Sum_probs=177.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||++||+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 588899987652 245899999999999999999999999999999999987531 3689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++ .|++||+.+....+. ...+..+++++++++.+++.+...... +..+.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 153 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHG---ANKKDLDGVVENALRSAALWDETSDRL-KSPAL 153 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcchhhhh-cCChh
Confidence 87532 134567999999988777 899999998754331 223344456888999998843211111 12246
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|. +|+
T Consensus 154 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~-~G~ 230 (258)
T PRK14268 154 SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL-MGE 230 (258)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999965 799999999975 4667799999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 231 i~~~~~~~ 238 (258)
T PRK14268 231 LIEFGQTR 238 (258)
T ss_pred EEEeCCHH
Confidence 99999863
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=343.86 Aligned_cols=214 Identities=25% Similarity=0.335 Sum_probs=179.7
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ +++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 56788877652 12459999999999999999999999999999999999877 46899999998764
Q ss_pred c----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 732 Q----HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 732 ~----~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
. ...++.+||++|++. .++..|+.||+.+..... ....++.+++++++++.++|.+..++. ++.|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRS-----PKTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----cccCCH
Confidence 2 234567999999975 356789999998865432 123444556788999999998776654 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|.|||++||+++ ++ ..+|++++|. +|++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~-~G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMD-RGKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEE-CCEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999975 34 6799999997 4899999
Q ss_pred cCCC
Q 000853 887 GPLG 890 (1252)
Q Consensus 887 g~~~ 890 (1252)
|+++
T Consensus 217 g~~~ 220 (274)
T PRK13644 217 GEPE 220 (274)
T ss_pred CCHH
Confidence 9864
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=340.98 Aligned_cols=214 Identities=25% Similarity=0.308 Sum_probs=179.0
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 66 (252)
T TIGR03005 2 RFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYH 66 (252)
T ss_pred EEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 5677777652 2458999999999999999999999999999999999877 458999999987532
Q ss_pred ----------------ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccc
Q 000853 733 ----------------HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLV 796 (1252)
Q Consensus 733 ----------------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 796 (1252)
..+++.++|++|++.+++..|+.||+.++.... .....+..++.+.++++.+++.+..+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~- 143 (252)
T TIGR03005 67 MPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM- 143 (252)
T ss_pred cccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC-
Confidence 124567999999998888999999998753211 1123344456788999999998766554
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhccee
Q 000853 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLI 875 (1252)
Q Consensus 797 g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~ 875 (1252)
+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++...+|+++
T Consensus 144 ----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~ 218 (252)
T TIGR03005 144 ----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVC 218 (252)
T ss_pred ----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEE
Confidence 4689999999999999999999999999999999999999999999998765 899999999975 5667899999
Q ss_pred eeecCcEEEEecCCC
Q 000853 876 LMKNGGRIIYSGPLG 890 (1252)
Q Consensus 876 ~l~~~G~~~~~g~~~ 890 (1252)
+|. +|++++.|+.+
T Consensus 219 ~l~-~G~i~~~g~~~ 232 (252)
T TIGR03005 219 FFD-KGRIVEQGKPD 232 (252)
T ss_pred EEE-CCEEEEeCCHH
Confidence 997 58999998863
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=340.10 Aligned_cols=221 Identities=24% Similarity=0.279 Sum_probs=179.4
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECCe
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGGY 728 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g~ 728 (1252)
++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 4 IEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred EEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 67888887652 245899999999999999999999999999999999987532 36899999998
Q ss_pred eCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 729 PKVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 729 ~~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
++.. ..+++.+||++|++.+++.+||.||+.+....+.. ....++..+.+.++++.++|.+...... +..+.+||
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS 148 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRL-DAPAGKLS 148 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhh-cCCcccCC
Confidence 7642 24566799999999888899999999987543211 1122344567889999999864211111 12256899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.+|++++|. +|++++
T Consensus 149 gG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~ 225 (250)
T PRK14247 149 GGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLY-KGQIVE 225 (250)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEE-CCeEEE
Confidence 9999999999999999999999999999999999999999999865 899999999975 4667899999997 589999
Q ss_pred ecCCC
Q 000853 886 SGPLG 890 (1252)
Q Consensus 886 ~g~~~ 890 (1252)
.|+++
T Consensus 226 ~g~~~ 230 (250)
T PRK14247 226 WGPTR 230 (250)
T ss_pred ECCHH
Confidence 99864
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=341.31 Aligned_cols=215 Identities=27% Similarity=0.407 Sum_probs=179.3
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 67788887653 2468999999999999999999999999999999999876 46899999998753
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 732 Q---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 732 ~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
. ..+++.++|++|++.+++.+||+||+.+...... ...+..++.++++++.+++.+..++. +..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHH
Confidence 2 2345678999999888788999999988643221 11223345678899999998766655 46899999
Q ss_pred HHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 809 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 809 rqrv~ia~al~------~~p~illlDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
||||+||+||+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||+++ ++...+|++++|. +|
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLH-QG 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEE-CC
Confidence 99999999999 5999999999999999999999999999997 56899999999975 4667899999997 58
Q ss_pred EEEEecCCCC
Q 000853 882 RIIYSGPLGQ 891 (1252)
Q Consensus 882 ~~~~~g~~~~ 891 (1252)
++++.|++++
T Consensus 218 ~i~~~~~~~~ 227 (258)
T PRK13548 218 RLVADGTPAE 227 (258)
T ss_pred EEEeeCCHHH
Confidence 9999988643
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=340.33 Aligned_cols=216 Identities=24% Similarity=0.285 Sum_probs=177.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 588999988663 245899999999999999999999999999999999987642 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD----GIKYSLVGL 798 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~g~ 798 (1252)
.++.. ...++.++|++|++.++ .+||+||+.+....+. ....+..++++.++++.+++. +..++
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~---- 146 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT---- 146 (254)
T ss_pred EecccccccHHHHhhceEEEeeccccc-cCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC----
Confidence 87532 23466799999998776 4899999998754321 112333456688889998874 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee
Q 000853 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 799 ~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
.+++||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.+|++++|.
T Consensus 147 -~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 147 -NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred -CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 2578999999999999999999999999999999999999999999999964 799999999975 4667899999997
Q ss_pred cCcEEEEecCCC
Q 000853 879 NGGRIIYSGPLG 890 (1252)
Q Consensus 879 ~~G~~~~~g~~~ 890 (1252)
+|+++..|++.
T Consensus 224 -~G~i~~~g~~~ 234 (254)
T PRK14273 224 -NGCIEEESSTD 234 (254)
T ss_pred -CCEEEEeCCHH
Confidence 58999999863
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=343.99 Aligned_cols=214 Identities=24% Similarity=0.346 Sum_probs=177.9
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 56788877652 2459999999999999999999999999999999999887 46899999998863
Q ss_pred c-----ccccceEEEEccCCCC-CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 Q-----HTFARISGYCEQNDIH-SPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~-----~~~~~~~~~v~q~~~~-~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
. ...++.++|++|++.. +...|+.||+.+....+ ....++..+++.++++.+++.+..++. +..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCC
Confidence 1 1345679999999753 34568999998865432 123334455688899999998766654 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~-~G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLR-QGQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999877899999999975 4667899999997 489999
Q ss_pred ecCCC
Q 000853 886 SGPLG 890 (1252)
Q Consensus 886 ~g~~~ 890 (1252)
.|+++
T Consensus 217 ~g~~~ 221 (271)
T PRK13638 217 HGAPG 221 (271)
T ss_pred eCCHH
Confidence 99864
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=328.27 Aligned_cols=203 Identities=21% Similarity=0.301 Sum_probs=157.9
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..+.++||++.++ ++++++++++|-|.--..++|+||||.||||||++|.|.+. |..|+..-|
T Consensus 585 PvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~RKn--- 647 (807)
T KOG0066|consen 585 PVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELRKN--- 647 (807)
T ss_pred CeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhhcc---
Confidence 3577788887653 35678999999999999999999999999999999999887 446776433
Q ss_pred CCcccccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 730 KVQHTFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 730 ~~~~~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
.+-++|+..|+. .+....|+-|.|.-. .+ .+. +.....|..+||...++++- +..||||
T Consensus 648 -----hrL~iG~FdQh~~E~L~~Eetp~EyLqr~----FN--lpy----q~ARK~LG~fGL~sHAHTik----ikdLSGG 708 (807)
T KOG0066|consen 648 -----HRLRIGWFDQHANEALNGEETPVEYLQRK----FN--LPY----QEARKQLGTFGLASHAHTIK----IKDLSGG 708 (807)
T ss_pred -----ceeeeechhhhhHHhhccccCHHHHHHHh----cC--CCh----HHHHHHhhhhhhhhccceEe----eeecCCc
Confidence 233689988875 344566777776522 11 222 22566789999998888762 5789999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||-||++|.--++.|+||||||||++||.++...+-+.|+++ ...||++|||-.+ +.+.-|.+.|+.+.|.-.-.|
T Consensus 709 QKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eIdG 784 (807)
T KOG0066|consen 709 QKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEIDG 784 (807)
T ss_pred chHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhccc
Confidence 999999999999999999999999999999999999999987 4579999998653 556667888887766545556
Q ss_pred CCCCc
Q 000853 888 PLGQH 892 (1252)
Q Consensus 888 ~~~~~ 892 (1252)
..++.
T Consensus 785 dFeDY 789 (807)
T KOG0066|consen 785 DFEDY 789 (807)
T ss_pred cHHHH
Confidence 65433
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=346.05 Aligned_cols=190 Identities=27% Similarity=0.420 Sum_probs=169.0
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcccc-ceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ-KTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~-~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
++|+|||||||||||++|+|+.+|+ +|+|.++|.++++..++ +.+|+|+|+..++|++||+|||.|+.+.++...
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k- 107 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPK- 107 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCch-
Confidence 6899999999999999999999997 99999999999987764 679999999999999999999999987654210
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
+ +.+.+++++.+.|+|.+..|++... |||||||||+|||||+
T Consensus 108 -----~----------------------------ei~~rV~eva~~L~l~~lL~r~P~~-----LSGGQrQRVAlaRAlV 149 (338)
T COG3839 108 -----A----------------------------EIDKRVKEVAKLLGLEHLLNRKPLQ-----LSGGQRQRVALARALV 149 (338)
T ss_pred -----H----------------------------HHHHHHHHHHHHcCChhHHhcCccc-----CChhhHHHHHHHHHHh
Confidence 0 1134578899999999999998765 9999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
++|++++||||+|.||+..+..+...++++.+..+.|+| .++|+..|+..++|||++|++|++...|++.++.
T Consensus 150 r~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~I-YVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 150 RKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTI-YVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred cCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEE-EEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 999999999999999999999999999998876665554 4678888999999999999999999999999884
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=335.16 Aligned_cols=199 Identities=26% Similarity=0.427 Sum_probs=163.8
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCC--CCCCH
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHS--PNITV 754 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~~tv 754 (1252)
+.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++. ..++.++|++|++.+. +..|+
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 458999999999999999999999999999999999876 45899999998653 3456789999998653 34899
Q ss_pred HHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000853 755 EESVIFSAWLRLSP-EIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 833 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsg 833 (1252)
+||+.+....+... ....+..+++++++++.+++.+..++. +.+||||||||++|||||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 99998754321100 011123345688999999998766554 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 834 LDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 834 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999999877899999999975 56677899999964 5 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=342.15 Aligned_cols=217 Identities=27% Similarity=0.357 Sum_probs=182.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ..+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 4789999887632 12459999999999999999999999999999999999887 4589999999986
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQ---HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
.. ...++.+||++|++. .++..||.||+.+..... ....++..+++.++++.+||.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNRE-----PHRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCH
Confidence 43 234567999999973 667789999998875433 123444556789999999998877665 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..+|++++|. +|++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~-~G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMN-KGEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999875 899999999975 34 5699999997 589999
Q ss_pred ecCCCC
Q 000853 886 SGPLGQ 891 (1252)
Q Consensus 886 ~g~~~~ 891 (1252)
.|++++
T Consensus 221 ~g~~~~ 226 (279)
T PRK13635 221 EGTPEE 226 (279)
T ss_pred ECCHHH
Confidence 998643
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=348.37 Aligned_cols=225 Identities=17% Similarity=0.237 Sum_probs=181.5
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC--CeEEEEEEECCee
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--GIIEGDIRIGGYP 729 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~--~~~~G~i~~~g~~ 729 (1252)
++++|+++.++.. .+...+|+||||+|++||++||+|+||||||||+++|+|..++ .+.+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 6788888876421 1124699999999999999999999999999999999998753 1468999999998
Q ss_pred CCcc---c----ccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000853 730 KVQH---T----FARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG 800 (1252)
Q Consensus 730 ~~~~---~----~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 800 (1252)
+... . .++.++|++|++ .+.+.+|+.+++........ ....++.++++.++++.+||.+..+.. ...
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l--~~~ 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRL--DVY 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHH--hCC
Confidence 6431 1 224699999998 46788999998876544321 223455567889999999997532111 123
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
+++|||||||||+|||||+.+|++|++||||+|||+.++.++++.|+++.+ .|.|+|++||+++ .+.+.+|++++|.
T Consensus 151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~- 228 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMY- 228 (326)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 579999999999999999999999999999999999999999999999986 4899999999975 4567899999997
Q ss_pred CcEEEEecCCCC
Q 000853 880 GGRIIYSGPLGQ 891 (1252)
Q Consensus 880 ~G~~~~~g~~~~ 891 (1252)
+|++++.|++++
T Consensus 229 ~G~ive~g~~~~ 240 (326)
T PRK11022 229 AGQVVETGKAHD 240 (326)
T ss_pred CCEEEEECCHHH
Confidence 599999998754
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=339.87 Aligned_cols=222 Identities=25% Similarity=0.277 Sum_probs=179.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478889887663 245899999999999999999999999999999999987642 3589999999
Q ss_pred eeCC--c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKV--Q---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~--~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++. . ..+++.++|++|++.+++.+|+.||+.+....+.. ....+..++.++++++.+++........ +..+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 148 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRL-NDYPS 148 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhh-ccChh
Confidence 8764 1 23456799999999888899999999887543311 1123334456788999998853211111 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...+|++++|. +|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~-~G~ 225 (253)
T PRK14267 149 NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY-LGK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999975 699999999975 4667899999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 226 i~~~~~~~ 233 (253)
T PRK14267 226 LIEVGPTR 233 (253)
T ss_pred EEEeCCHH
Confidence 99999864
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=340.86 Aligned_cols=219 Identities=20% Similarity=0.242 Sum_probs=179.9
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 478889887652 2469999999999999999999999999999999999877 5689999999876
Q ss_pred Ccc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC----------C--CCCHHHHHHHHHHHHHHcCCcccccc
Q 000853 731 VQH---T-FARISGYCEQNDIHSPNITVEESVIFSAWLRLS----------P--EIDLKTKAEFVNEVLQTIELDGIKYS 794 (1252)
Q Consensus 731 ~~~---~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~----------~--~~~~~~~~~~~~~~l~~~~l~~~~~~ 794 (1252)
... . .+..++|++|++.+++.+|++||+.+....... . .....+..+.+.+.++.+|+.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 432 1 234589999999999999999999986431100 0 00112234567888999999776655
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcc
Q 000853 795 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDD 873 (1252)
Q Consensus 795 ~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~ 873 (1252)
. +++||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+
T Consensus 150 ~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 Q-----AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred C-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 4 4689999999999999999999999999999999999999999999999875 899999999975 56678999
Q ss_pred eeeeecCcEEEEecCCCC
Q 000853 874 LILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 874 ~~~l~~~G~~~~~g~~~~ 891 (1252)
+++|. +|++++.|++++
T Consensus 224 i~~l~-~g~i~~~~~~~~ 240 (255)
T PRK11300 224 IYVVN-QGTPLANGTPEE 240 (255)
T ss_pred EEEEE-CCeEEecCCHHH
Confidence 99997 589999998643
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-37 Score=337.72 Aligned_cols=216 Identities=26% Similarity=0.332 Sum_probs=178.4
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 56788877552 2458999999999999999999999999999999999876 45899999998754
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-----CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 732 QH----TFARISGYCEQNDIHSPNITVEESVIFSAWLRLS-----PEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 732 ~~----~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.. ..++.++|++|++.+++.+|++||+.+....... .....+..+++++++++.+++.+..+.. ++
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AG 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hh
Confidence 31 1234699999999999999999999886432100 0011233455688999999998766654 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|. +|+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLH-QGS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEE-CCe
Confidence 8999999999999999999999999999999999999999999999976 799999999975 4667899999997 489
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 220 ~~~~~~~~ 227 (242)
T TIGR03411 220 VLAEGSLD 227 (242)
T ss_pred EEeeCCHH
Confidence 99999864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=353.48 Aligned_cols=206 Identities=22% Similarity=0.314 Sum_probs=176.9
Q ss_pred cccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee----CCc---cc---c-cceEEEEc
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP----KVQ---HT---F-ARISGYCE 743 (1252)
Q Consensus 675 ~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~----~~~---~~---~-~~~~~~v~ 743 (1252)
+...+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+ +.. .. . ++.++|++
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 45678999999999999999999999999999999999887 568999999963 211 11 2 25799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc
Q 000853 744 QNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPS 823 (1252)
Q Consensus 744 q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~ 823 (1252)
|++.+++.+||+||+.|+...+. ...++..+++.++++.+||.+..+.. +.+||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~g---~~~~~~~~~a~e~le~vgL~~~~~~~-----~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQG---MPEAERRKRVDEQLELVGLAQWADKK-----PGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999865432 23455567789999999998877665 46899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCc
Q 000853 824 IIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 824 illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
||+|||||+|||+.++..+++.|+++.++ ++|||++||+++ ++.+.+|++++|. +|+++..|++++.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~-~G~iv~~g~~~ei 252 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIME-GGRIIQHGTPEEI 252 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEecCHHHH
Confidence 99999999999999999999999999865 899999999975 5678899999997 5899999997543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-37 Score=330.28 Aligned_cols=194 Identities=27% Similarity=0.389 Sum_probs=164.1
Q ss_pred ceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHHHHHH
Q 000853 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEESVIF 760 (1252)
Q Consensus 682 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~~tv~e~l~~ 760 (1252)
|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999887 4589999999876432 234679999999998889999999987
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 000853 761 SAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840 (1252)
Q Consensus 761 ~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~ 840 (1252)
....+. .. .+..++++.++++.+++.+..++. +.+||||||||++|||+|+.+|++++|||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 543211 11 123345688999999998766655 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 841 IVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 841 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
.+++.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLD-NGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEE-CCEEeecC
Confidence 999999999754 899999999975 4667799999997 48887654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=347.40 Aligned_cols=227 Identities=22% Similarity=0.253 Sum_probs=184.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++.+|+++.+....... ...+.+.+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 478899988775321100 00113469999999999999999999999999999999999877 4589999999886
Q ss_pred Ccc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000853 731 VQH------TFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGV 801 (1252)
Q Consensus 731 ~~~------~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~ 801 (1252)
... .+++.++|++|++ .+.+.+|+.+++........ ....++.++++.++++.+||.+ ..++. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 431 3456799999998 57788999999987654321 2334455677899999999963 33433 5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
++|||||||||+|||||+.+|++||+||||+|||..++..+++.|+++.++ |.|||++||+++ .+...+|++++|. +
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~-~ 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMY-L 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 799999999999999999999999999999999999999999999999764 999999999865 4556789999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|+.++
T Consensus 231 G~ive~g~~~~ 241 (327)
T PRK11308 231 GRCVEKGTKEQ 241 (327)
T ss_pred CEEEEECCHHH
Confidence 99999998754
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=339.51 Aligned_cols=222 Identities=22% Similarity=0.310 Sum_probs=179.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 377888887663 245899999999999999999999999999999999987532 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++.+||+||+.+....+. ....+..+++++++++.+++.+...... ...+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 147 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRL-DKPGG 147 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHh-hCCcc
Confidence 87531 2345679999999988889999999988754332 1123344567888999998842111111 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee----
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK---- 878 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~---- 878 (1252)
+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~ 225 (258)
T PRK14241 148 GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEAT 225 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccC
Confidence 8999999999999999999999999999999999999999999999964 689999999975 5667899999997
Q ss_pred -cCcEEEEecCCC
Q 000853 879 -NGGRIIYSGPLG 890 (1252)
Q Consensus 879 -~~G~~~~~g~~~ 890 (1252)
++|++++.|+++
T Consensus 226 ~~~g~i~~~~~~~ 238 (258)
T PRK14241 226 GKPGRLVEIDDTE 238 (258)
T ss_pred CCCceEEecCCHH
Confidence 359999999863
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=347.50 Aligned_cols=226 Identities=20% Similarity=0.296 Sum_probs=183.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-eEEEEEEECCee
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYP 729 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 729 (1252)
.++++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 48899998876431 12346999999999999999999999999999999999987641 138999999998
Q ss_pred CCc---cc---cc-ceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000853 730 KVQ---HT---FA-RISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG 800 (1252)
Q Consensus 730 ~~~---~~---~~-~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 800 (1252)
+.. .. ++ +.++|++|++ .+.+.+|+.+++........ ....++..+++.++++.++|.+..+. . ...
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KMY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cCC
Confidence 643 11 22 4799999998 57789999999987654432 23445556778899999999753322 1 233
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
+++|||||||||+|||||+.+|++||+||||+|||+.++..+++.|+++.++ |.|+|++|||++ .+...+|++++|.
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~- 236 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY- 236 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE-
Confidence 6799999999999999999999999999999999999999999999999865 899999999975 4556899999997
Q ss_pred CcEEEEecCCCC
Q 000853 880 GGRIIYSGPLGQ 891 (1252)
Q Consensus 880 ~G~~~~~g~~~~ 891 (1252)
+|++++.|++++
T Consensus 237 ~G~ive~g~~~~ 248 (330)
T PRK09473 237 AGRTMEYGNARD 248 (330)
T ss_pred CCEEEEECCHHH
Confidence 599999999754
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=335.09 Aligned_cols=212 Identities=23% Similarity=0.327 Sum_probs=173.4
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (230)
T TIGR03410 2 EVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITK 66 (230)
T ss_pred EEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCC
Confidence 4677776552 2469999999999999999999999999999999999887 468999999987543
Q ss_pred c----cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCHH
Q 000853 733 H----TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE-LDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 733 ~----~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~g~~~~~~lSgG 807 (1252)
. ..++.++|++|++.+++.+|+.||+.+....+. .. ..+...++++.++ +.+..++. +++||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G 135 (230)
T TIGR03410 67 LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGG 135 (230)
T ss_pred CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHH
Confidence 1 124578999999998888999999988754331 11 1233566777775 44444443 4689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|+++++. +|++++.
T Consensus 136 ~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~g~i~~~ 213 (230)
T TIGR03410 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVME-RGRVVAS 213 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEE
Confidence 999999999999999999999999999999999999999999864 899999999975 4666789999997 5899999
Q ss_pred cCCCCc
Q 000853 887 GPLGQH 892 (1252)
Q Consensus 887 g~~~~~ 892 (1252)
|+.++.
T Consensus 214 ~~~~~~ 219 (230)
T TIGR03410 214 GAGDEL 219 (230)
T ss_pred CCHHHc
Confidence 987543
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=341.00 Aligned_cols=225 Identities=23% Similarity=0.310 Sum_probs=180.2
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++.....+ ..+++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 67888888764210000 0113569999999999999999999999999999999999877 46899999998764
Q ss_pred cc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000853 732 QH------TFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVS 802 (1252)
Q Consensus 732 ~~------~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 802 (1252)
.. .+++.++|++|++ .+.+.+|++||+.+...... ....+..++++.++++.+++. +..+.. +.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 21 1356799999996 45678999999987643211 122233456788999999995 444443 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ .+.+.+|++++|. +|
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~-~G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMD-KG 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEe-CC
Confidence 89999999999999999999999999999999999999999999999865 899999999975 4666899999997 58
Q ss_pred EEEEecCCCC
Q 000853 882 RIIYSGPLGQ 891 (1252)
Q Consensus 882 ~~~~~g~~~~ 891 (1252)
++++.|++++
T Consensus 228 ~i~~~g~~~~ 237 (265)
T TIGR02769 228 QIVEECDVAQ 237 (265)
T ss_pred EEEEECCHHH
Confidence 9999998754
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=348.51 Aligned_cols=213 Identities=25% Similarity=0.407 Sum_probs=178.7
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
-.++|+||++++.. ++++|+++||+|++||.+||+|+|||||||++|+|.+... .+|+|.+||++
T Consensus 350 ~~I~F~dV~f~y~~------------k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~d 414 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGP------------KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQD 414 (591)
T ss_pred CcEEEEeeEEEeCC------------CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCee
Confidence 35999999998742 3459999999999999999999999999999999999775 48999999998
Q ss_pred CC---cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000853 730 KV---QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLP 799 (1252)
Q Consensus 730 ~~---~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~ 799 (1252)
+. ....|+.+||||||..++ +-||.+|+.|+. +..+.+ +|.++.+..++.+ ...|.+|+.
T Consensus 415 ik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn-----~sas~e----eV~e~~k~a~~hd~i~~l~~GY~T~VGer 484 (591)
T KOG0057|consen 415 IKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGN-----PSASDE----EVVEACKRAGLHDVISRLPDGYQTLVGER 484 (591)
T ss_pred HhhhChHHhhhheeEeCCccccc-chhHHHHhhcCC-----CCcCHH----HHHHHHHHcCcHHHHHhccccchhhHhhc
Confidence 64 356889999999997765 579999999862 344433 3555566665543 445667766
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
+ ..|||||||||+||||++.+|+|+++|||||.||.+++.++++.+++.. .++|+|++.|+. +....||+++++.+
T Consensus 485 G-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l--~ll~~~DkI~~l~n 560 (591)
T KOG0057|consen 485 G-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRL--DLLKDFDKIIVLDN 560 (591)
T ss_pred c-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecc--hhHhcCCEEEEEEC
Confidence 4 5799999999999999999999999999999999999999999999943 589999999985 57889999999985
Q ss_pred CcEEEEecCCCCc
Q 000853 880 GGRIIYSGPLGQH 892 (1252)
Q Consensus 880 ~G~~~~~g~~~~~ 892 (1252)
|++.+.|+..+.
T Consensus 561 -G~v~e~gth~el 572 (591)
T KOG0057|consen 561 -GTVKEYGTHSEL 572 (591)
T ss_pred -CeeEEeccHHHH
Confidence 899999997543
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=341.36 Aligned_cols=217 Identities=23% Similarity=0.362 Sum_probs=181.3
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++++|+++.++. +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 6 ~~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~ 72 (271)
T PRK13632 6 VMIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGIT 72 (271)
T ss_pred eEEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEe
Confidence 35889999886531 13468999999999999999999999999999999999877 458999999988
Q ss_pred CCc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 730 KVQ---HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 730 ~~~---~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
+.. ..+++.++|++|++. .++.+|++||+.+..... ....++..+++.++++.++|.+..++. ++.||
T Consensus 73 i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 144 (271)
T PRK13632 73 ISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLS 144 (271)
T ss_pred cCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCC
Confidence 643 235677999999974 567789999998865322 123344456788999999998776665 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||++||+++ ++ ..+|++++|. +|+++
T Consensus 145 ~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~-~G~i~ 221 (271)
T PRK13632 145 GGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFS-EGKLI 221 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999765 599999999976 34 5799999997 58999
Q ss_pred EecCCC
Q 000853 885 YSGPLG 890 (1252)
Q Consensus 885 ~~g~~~ 890 (1252)
..|+++
T Consensus 222 ~~g~~~ 227 (271)
T PRK13632 222 AQGKPK 227 (271)
T ss_pred EecCHH
Confidence 999864
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=341.84 Aligned_cols=219 Identities=28% Similarity=0.391 Sum_probs=180.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 478889887652 2469999999999999999999999999999999999876 4589999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLS-PEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
.. ..+++.++|++|++.+++.+|+.||+.+....... ........+++++++++.+++.+..++. +.+|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----VDSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCH
Confidence 32 23456799999998888889999999875321100 0011122345688999999998766655 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~-~G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALR-GGEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEE
Confidence 9999999999999999999999999999999999999999999765 899999999975 5667899999997 589999
Q ss_pred ecCCCC
Q 000853 886 SGPLGQ 891 (1252)
Q Consensus 886 ~g~~~~ 891 (1252)
.|+.++
T Consensus 229 ~~~~~~ 234 (265)
T PRK10575 229 QGTPAE 234 (265)
T ss_pred ecCHHH
Confidence 998654
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=336.25 Aligned_cols=217 Identities=24% Similarity=0.297 Sum_probs=174.1
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 68 (243)
T TIGR01978 2 KIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68 (243)
T ss_pred eEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCC
Confidence 4677776652 246899999999999999999999999999999999984211568999999987543
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCC----CCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCC-
Q 000853 733 H---T-FARISGYCEQNDIHSPNITVEESVIFSAWLRLSP----EIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGVS- 802 (1252)
Q Consensus 733 ~---~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~----~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~- 802 (1252)
. . .+..++|++|++.+++.+|++|++.+........ ....++..+++.++++.++|.+ ..+.. +.
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 143 (243)
T TIGR01978 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRS-----VNE 143 (243)
T ss_pred CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccc-----ccc
Confidence 1 2 2334899999999999999999998764322110 1122333466889999999973 44443 33
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHH-hcceeeeecCc
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEA-FDDLILMKNGG 881 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~~G 881 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|. +|
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~-~G 221 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLL-DG 221 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEe-CC
Confidence 59999999999999999999999999999999999999999999999877899999999975 45455 69999887 58
Q ss_pred EEEEecCC
Q 000853 882 RIIYSGPL 889 (1252)
Q Consensus 882 ~~~~~g~~ 889 (1252)
++++.|++
T Consensus 222 ~i~~~g~~ 229 (243)
T TIGR01978 222 RIVKSGDV 229 (243)
T ss_pred EEEEecCH
Confidence 99999986
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=337.28 Aligned_cols=221 Identities=26% Similarity=0.340 Sum_probs=177.6
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC---CCeEEEEEEEC
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIEGDIRIG 726 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~---~~~~~G~i~~~ 726 (1252)
..++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 3588999988763 2358999999999999999999999999999999999743 12358999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000853 727 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801 (1252)
Q Consensus 727 g~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 801 (1252)
|.++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+..+++++++++.+++.+...... ...+
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRL-HESA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHh-hCCc
Confidence 987642 134567999999988777 5999999987543321 122334566888999999854211111 1225
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
.+|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|.+ |
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~-G 224 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM-G 224 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-C
Confidence 68999999999999999999999999999999999999999999999954 799999999975 46678999999975 8
Q ss_pred EEEEecCCC
Q 000853 882 RIIYSGPLG 890 (1252)
Q Consensus 882 ~~~~~g~~~ 890 (1252)
++++.|+++
T Consensus 225 ~i~~~g~~~ 233 (253)
T PRK14242 225 KLIEVGPTE 233 (253)
T ss_pred EEEEeCCHH
Confidence 999998863
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=339.97 Aligned_cols=218 Identities=24% Similarity=0.359 Sum_probs=179.8
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 67788877652 3469999999999999999999999999999999999876 46899999998753
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccC-CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 732 Q---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRL-SPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 732 ~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
. ...++.++|++|++.+++.+|+.||+.++..... ......+...++++++++.+++.+..++. +..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHH
Confidence 2 2345678999999888888999999987521100 00111123345678899999998766654 4689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLA-NGHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEE-CCeEEEEc
Confidence 999999999999999999999999999999999999999999877899999999975 5678899999997 48999999
Q ss_pred CCCC
Q 000853 888 PLGQ 891 (1252)
Q Consensus 888 ~~~~ 891 (1252)
+.++
T Consensus 221 ~~~~ 224 (255)
T PRK11231 221 TPEE 224 (255)
T ss_pred CHHH
Confidence 8754
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=340.83 Aligned_cols=220 Identities=25% Similarity=0.314 Sum_probs=181.8
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEE
Confidence 3588899988763 2458999999999999999999999999999999999877 458999999987
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 730 KVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLS-PEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 730 ~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
+.. ...++.++|++|++.+++..|++||+.+...-... .....+..+++++++++.+++.+..++. ++.||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 145 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLS 145 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCC
Confidence 542 23345789999999888889999999875211100 0001123345688999999998766654 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++.+.+|++++|. +|+++
T Consensus 146 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~ 223 (265)
T PRK10253 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALR-EGKIV 223 (265)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999864 899999999975 5778899999997 58999
Q ss_pred EecCCCC
Q 000853 885 YSGPLGQ 891 (1252)
Q Consensus 885 ~~g~~~~ 891 (1252)
+.|++++
T Consensus 224 ~~g~~~~ 230 (265)
T PRK10253 224 AQGAPKE 230 (265)
T ss_pred EeCCHHH
Confidence 9998754
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=342.80 Aligned_cols=219 Identities=24% Similarity=0.331 Sum_probs=177.5
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++... ...+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67888888763210 001359999999999999999999999999999999999877 46899999998754
Q ss_pred c-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCC
Q 000853 732 Q-------HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGVS 802 (1252)
Q Consensus 732 ~-------~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~ 802 (1252)
. ..+++.++|++|++. .+...|++||+.+...... ...++..++++++++.++|.+ ..+.. +.
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFG---VSQEEAEALAREKLALVGISESLFEKN-----PF 144 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCChhhhhCC-----cc
Confidence 2 234567999999962 2334799999988654321 233444566788999999963 34443 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|. +|+
T Consensus 145 ~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~-~G~ 222 (280)
T PRK13649 145 ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLE-KGK 222 (280)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEE-CCE
Confidence 89999999999999999999999999999999999999999999999877899999999975 4667789999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 223 i~~~g~~~ 230 (280)
T PRK13649 223 LVLSGKPK 230 (280)
T ss_pred EEEeCCHH
Confidence 99998864
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=338.50 Aligned_cols=223 Identities=22% Similarity=0.292 Sum_probs=178.9
Q ss_pred CCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC--C-CeEEEEEE
Q 000853 648 EPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIEGDIR 724 (1252)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~ 724 (1252)
....++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... + .+.+|+|.
T Consensus 10 ~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 10 APSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred CCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 344688999988763 2358999999999999999999999999999999999864 2 13689999
Q ss_pred ECCeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000853 725 IGGYPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP 799 (1252)
Q Consensus 725 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 799 (1252)
++|.++.. ..+++.++|++|++.+++ .|++||+.+....+. ..+.++.+++++++++.+++.+...... ..
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~ 152 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQ 152 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hc
Confidence 99987632 234667999999988776 899999988654321 1233444567889999999843111111 11
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
.+.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|.
T Consensus 153 ~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~- 229 (260)
T PRK10744 153 SGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMY- 229 (260)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 2468999999999999999999999999999999999999999999999964 789999999975 4667889999997
Q ss_pred CcEEEEecCCC
Q 000853 880 GGRIIYSGPLG 890 (1252)
Q Consensus 880 ~G~~~~~g~~~ 890 (1252)
+|++++.|+++
T Consensus 230 ~G~i~~~g~~~ 240 (260)
T PRK10744 230 LGELIEFGNTD 240 (260)
T ss_pred CCEEEEeCCHH
Confidence 58999999863
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=329.75 Aligned_cols=213 Identities=23% Similarity=0.338 Sum_probs=175.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++... ..+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~~---------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQGE---------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCCC---------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 478899988763210 01358999999999999999999999999999999999877 4589999999876
Q ss_pred Cccc------c-cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000853 731 VQHT------F-ARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSG 803 (1252)
Q Consensus 731 ~~~~------~-~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 803 (1252)
.... . ++.++|++|++.+++.+|+.||+.+....+. ....+.++++.++++.+++.+..+.. +..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHL-----PAQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCC-----hhh
Confidence 4311 1 2579999999988888999999988654331 22334456788999999998766554 468
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 804 lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+ +.+|++++|. +|+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~-~g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLV-NGQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999754 899999999975 34 6699999997 488
Q ss_pred EEE
Q 000853 883 IIY 885 (1252)
Q Consensus 883 ~~~ 885 (1252)
+++
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 765
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=340.99 Aligned_cols=215 Identities=29% Similarity=0.381 Sum_probs=179.1
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.+.. ++.+++|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYPD------------GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeCC------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 567888876531 2358999999999999999999999999999999999877 45899999998863
Q ss_pred c-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 Q-----HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~-----~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
. ...++.++|++|++. .+...||.||+.+..... ....++..+++.++++.++|.+..++. +++||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKP-----PHHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCC-----hhhCC
Confidence 1 124567999999963 334579999998764322 123344556788999999998777665 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|.+ |++++
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 46678999999975 89999
Q ss_pred ecCCC
Q 000853 886 SGPLG 890 (1252)
Q Consensus 886 ~g~~~ 890 (1252)
.|+++
T Consensus 218 ~g~~~ 222 (275)
T PRK13639 218 EGTPK 222 (275)
T ss_pred eCCHH
Confidence 99864
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=337.46 Aligned_cols=224 Identities=23% Similarity=0.253 Sum_probs=181.5
Q ss_pred CCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC---CeEEEEE
Q 000853 647 FEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDI 723 (1252)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~i 723 (1252)
..+..++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+.+|+|
T Consensus 16 ~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 82 (267)
T PRK14237 16 EEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI 82 (267)
T ss_pred CCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEE
Confidence 3445689999988763 24699999999999999999999999999999999998753 1468999
Q ss_pred EECCeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 000853 724 RIGGYPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798 (1252)
Q Consensus 724 ~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~ 798 (1252)
.++|.++.. ...++.++|++|++.+++ .|++||+.+...... ....+..++++.++++.++|.+..+....
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~- 158 (267)
T PRK14237 83 LYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAG--VKDKKVLDEIVETSLKQAALWDQVKDDLH- 158 (267)
T ss_pred EECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCchhhhhhc-
Confidence 999988642 134667999999987776 699999988653321 11233445668889999998643222221
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee
Q 000853 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 799 ~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
..+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.||++++|.
T Consensus 159 ~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~ 236 (267)
T PRK14237 159 KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFY 236 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEE
Confidence 23578999999999999999999999999999999999999999999999964 799999999975 5678899999997
Q ss_pred cCcEEEEecCCC
Q 000853 879 NGGRIIYSGPLG 890 (1252)
Q Consensus 879 ~~G~~~~~g~~~ 890 (1252)
+|++++.|++.
T Consensus 237 -~G~i~~~g~~~ 247 (267)
T PRK14237 237 -LGDLIEYDKTR 247 (267)
T ss_pred -CCEEEEeCCHH
Confidence 58999999863
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=300.07 Aligned_cols=191 Identities=24% Similarity=0.402 Sum_probs=165.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
++||+||||||||||||+|+|+..|. +|+|.+||++.+...+ ++.++.+.|+..+|..+||++|+.++.. ++-
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~---P~L 100 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS---PGL 100 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC---ccc
Confidence 48999999999999999999999997 9999999999877655 5779999999999999999999988642 111
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
+... +.+.+++.++...||....+...++ |||||||||++||+|
T Consensus 101 kL~a-------------------------------~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGqRQRvALARcl 144 (231)
T COG3840 101 KLNA-------------------------------EQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQRQRVALARCL 144 (231)
T ss_pred ccCH-------------------------------HHHHHHHHHHHHhChhhHhhhCccc-----cCchHHHHHHHHHHH
Confidence 1100 0123467889999999999998887 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
+++-+|++||||+|+|||.-+.+....+.+++.+++.|+++..||| +++.+.+|+++++++|+|.++|+.++..
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999999999999999999999999999999998888888777666 4888999999999999999999877653
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=327.15 Aligned_cols=198 Identities=24% Similarity=0.307 Sum_probs=167.3
Q ss_pred cccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-ccccceEEEEccCCCCCCCCCHHHH
Q 000853 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-HTFARISGYCEQNDIHSPNITVEES 757 (1252)
Q Consensus 679 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~~tv~e~ 757 (1252)
.++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 4579999999999999999999999999999999887 458999999987643 2345679999999998888999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 000853 758 VIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837 (1252)
Q Consensus 758 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~ 837 (1252)
+.+....+. . .....+++++++++.+++.+..++. +++||||||||++|||+|+.+|++++|||||+|||+.
T Consensus 91 ~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 987543211 1 1122345678899999998766654 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 838 AAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 838 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|. +|++++.|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~-~g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVS-QGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEE-CCeEEEecC
Confidence 999999999998764 899999999965 4567899999997 589998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=338.63 Aligned_cols=221 Identities=26% Similarity=0.354 Sum_probs=180.9
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-eEEEEEEECCee
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYP 729 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 729 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 478888887652 246899999999999999999999999999999999987643 236999999987
Q ss_pred CCc--------ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-----CCCCHHHHHHHHHHHHHHcCCcccccccc
Q 000853 730 KVQ--------HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLS-----PEIDLKTKAEFVNEVLQTIELDGIKYSLV 796 (1252)
Q Consensus 730 ~~~--------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 796 (1252)
+.. ...++.++|++|++.+++.+|+.||+.+......+ .....++.+++++++++.+++.+..++.
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~- 149 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR- 149 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-
Confidence 532 12355689999999888899999999875321000 0011123445788999999998766654
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhccee
Q 000853 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLI 875 (1252)
Q Consensus 797 g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~ 875 (1252)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|+++
T Consensus 150 ----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 150 ----VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred ----ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 4689999999999999999999999999999999999999999999999754 899999999975 4677899999
Q ss_pred eeecCcEEEEecCCCC
Q 000853 876 LMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 876 ~l~~~G~~~~~g~~~~ 891 (1252)
+|. +|++++.|++++
T Consensus 225 ~l~-~g~i~~~g~~~~ 239 (262)
T PRK09984 225 ALR-QGHVFYDGSSQQ 239 (262)
T ss_pred EEE-CCEEEEeCCHHH
Confidence 997 589999998754
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=338.68 Aligned_cols=217 Identities=24% Similarity=0.321 Sum_probs=181.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4889999887632 12358999999999999999999999999999999999877 4589999999876
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQ---HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
.. ..+++.++|++|++. +++..|+.+|+.+..... ....+...++++++++.+++.+..+.. +++|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 43 235667999999974 677789999998865432 123344456688999999998766654 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++. .+|++++|. +|++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~-~G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMN-KGTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999976 444 599999997 589999
Q ss_pred ecCCCC
Q 000853 886 SGPLGQ 891 (1252)
Q Consensus 886 ~g~~~~ 891 (1252)
.|++++
T Consensus 223 ~g~~~~ 228 (269)
T PRK13648 223 EGTPTE 228 (269)
T ss_pred ecCHHH
Confidence 998754
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=339.30 Aligned_cols=218 Identities=28% Similarity=0.407 Sum_probs=179.0
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 46677776652 2469999999999999999999999999999999999877 45899999998754
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHH-ccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 732 Q---HTFARISGYCEQNDIHSPNITVEESVIFSAW-LRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 732 ~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~-l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
. ...++.++|++|++.+++.+||.||+.+... .+........+..+++.++++.+++.+..++. +..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----MSTLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHH
Confidence 3 2335568999999877788999999987531 11000011122345688999999998766654 4689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLD-GGRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCCEEEec
Confidence 999999999999999999999999999999999999999999877899999999976 5668899999997 48999999
Q ss_pred CCCC
Q 000853 888 PLGQ 891 (1252)
Q Consensus 888 ~~~~ 891 (1252)
+.++
T Consensus 220 ~~~~ 223 (256)
T TIGR03873 220 PPRE 223 (256)
T ss_pred CHHH
Confidence 8654
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=335.49 Aligned_cols=220 Identities=23% Similarity=0.290 Sum_probs=176.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcC---CCCCeEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR---KTGGIIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~---~~~~~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|. .++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 477888887652 24589999999999999999999999999999999996 23212489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ...++.++|++|++.+++ .|+.||+.+....+.. ...+..++.++++++.+++.+...... ...+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKL-KESAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcc
Confidence 87642 234567999999987776 6999999887544321 122334456788999999864221111 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|++++|. +|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~-~G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFY-MGE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEE-CCE
Confidence 899999999999999999999999999999999999999999999995 4799999999975 5667899999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 223 ~~~~~~~~ 230 (250)
T PRK14245 223 MVEYDDTK 230 (250)
T ss_pred EEEECCHH
Confidence 99999864
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=340.92 Aligned_cols=219 Identities=24% Similarity=0.325 Sum_probs=181.8
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCe-EEEEEEECCe
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI-IEGDIRIGGY 728 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~-~~G~i~~~g~ 728 (1252)
..++++|+++.++. ..+.+++|+||+|++||++||+||||||||||+++|+|..++.. .+|+|.++|.
T Consensus 4 ~~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~ 72 (282)
T PRK13640 4 NIVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGI 72 (282)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCE
Confidence 35889999887632 12459999999999999999999999999999999999876421 1399999999
Q ss_pred eCCc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000853 729 PKVQ---HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGL 804 (1252)
Q Consensus 729 ~~~~---~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~l 804 (1252)
++.. ...++.+||++|++. .++..||.||+.|....+ ....++.++++.++++.++|.+..+.. ++.|
T Consensus 73 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~L 144 (282)
T PRK13640 73 TLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANL 144 (282)
T ss_pred ECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccC
Confidence 8643 234567999999974 567899999998864332 234445566789999999998766655 4689
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 805 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 805 SgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
|||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|. +|++
T Consensus 145 S~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~-~G~i 221 (282)
T PRK13640 145 SGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLD-DGKL 221 (282)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999865 899999999975 34 6799999997 5899
Q ss_pred EEecCCC
Q 000853 884 IYSGPLG 890 (1252)
Q Consensus 884 ~~~g~~~ 890 (1252)
++.|+++
T Consensus 222 ~~~g~~~ 228 (282)
T PRK13640 222 LAQGSPV 228 (282)
T ss_pred EEeCCHH
Confidence 9999864
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=325.27 Aligned_cols=193 Identities=24% Similarity=0.423 Sum_probs=165.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCc---cCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGY---RLDEFV-PQKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~---~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++++|||||||||||++|+|+..|+ +|.|.+||+ +.+... ..+.+|||.|+-.+|+++||.|||.|+.+++.
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~ 106 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK 106 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccc
Confidence 47999999999999999999999998 999999999 555533 34679999999999999999999999987651
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
. + +.+ .+.+.+++++|+.+.|++..+... ..|||||||||++|
T Consensus 107 ~--~---p~~---------------------------~~~r~rv~elL~lvqL~~la~ryP-----~QLSGGQrQRVALA 149 (345)
T COG1118 107 E--R---PSE---------------------------AEIRARVEELLRLVQLEGLADRYP-----AQLSGGQRQRVALA 149 (345)
T ss_pred c--C---CCh---------------------------hhHHHHHHHHHHHhcccchhhcCc-----hhcChHHHHHHHHH
Confidence 1 1 000 012345688899999988777766 44999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|||+..|++|+||||+++||++.+.++.++|+++....+.+++. ++|+..|++++||||++|++|+|...||+.++.
T Consensus 150 RALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvf-VTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 150 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVF-VTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEE-EeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 99999999999999999999999999999999998876766655 567888999999999999999999999999873
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=322.77 Aligned_cols=196 Identities=30% Similarity=0.578 Sum_probs=163.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-eEEEEEEECCee
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYP 729 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 729 (1252)
.++|+|+++.++.+ .+++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 58899999988643 13457999999999999999999999999999999999987632 568999999988
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 730 KVQ--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 730 ~~~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
+.. ...++.++|++|++.+++.+||+||+.+....+ .+. .+..||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~-----~~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNE-----FVRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------ccc-----chhhCCHH
Confidence 643 235667999999998889999999998753211 111 24689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ +.|+|+++|+...++.+.+|++++|.+ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 677777666543367788999999975 898876
Q ss_pred c
Q 000853 887 G 887 (1252)
Q Consensus 887 g 887 (1252)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=346.62 Aligned_cols=228 Identities=15% Similarity=0.225 Sum_probs=180.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC--CeEEEEEEECCe
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--GIIEGDIRIGGY 728 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~--~~~~G~i~~~g~ 728 (1252)
.++++|+++.++.. .+.+.+|+||||+|++||++||+|+||||||||+++|+|..++ .+.+|+|.++|.
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 37788998877432 1234699999999999999999999999999999999998752 246899999999
Q ss_pred eCCcc---c----ccceEEEEccCCC--CCCCCCHHHHHHHHHHccCCCC---CCHHHHHHHHHHHHHHcCCcccccccc
Q 000853 729 PKVQH---T----FARISGYCEQNDI--HSPNITVEESVIFSAWLRLSPE---IDLKTKAEFVNEVLQTIELDGIKYSLV 796 (1252)
Q Consensus 729 ~~~~~---~----~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~l~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~ 796 (1252)
++... . .++.++|++|++. +.+.+||.+++.+......... ....+.++++.++++.+||.+..+..
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~- 152 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM- 152 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH-
Confidence 86431 1 1346999999985 5678999999976432111000 11123456788999999997532211
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhccee
Q 000853 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLI 875 (1252)
Q Consensus 797 g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~ 875 (1252)
...+.+|||||||||+||+||+.+|++||+||||+|||+.++..+++.|+++.++ |.|||++|||++ .+.+.+|+++
T Consensus 153 -~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~ 230 (330)
T PRK15093 153 -RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKIN 230 (330)
T ss_pred -hCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEE
Confidence 1235799999999999999999999999999999999999999999999999874 899999999975 4567899999
Q ss_pred eeecCcEEEEecCCCC
Q 000853 876 LMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 876 ~l~~~G~~~~~g~~~~ 891 (1252)
+|. +|++++.|+.++
T Consensus 231 vm~-~G~ive~g~~~~ 245 (330)
T PRK15093 231 VLY-CGQTVETAPSKE 245 (330)
T ss_pred EEE-CCEEEEECCHHH
Confidence 997 599999998644
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=331.82 Aligned_cols=198 Identities=23% Similarity=0.327 Sum_probs=167.0
Q ss_pred ccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHH
Q 000853 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVI 759 (1252)
Q Consensus 680 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~ 759 (1252)
|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..... ..+|++|++.+++.+|+.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999877 468999999988643221 2489999999888899999998
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 000853 760 FSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 839 (1252)
Q Consensus 760 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~ 839 (1252)
+...... .....++.++++.++++.+++.+..++. +.+||||||||++|||+|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 8632111 1223344456688999999998766654 468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCC
Q 000853 840 AIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 840 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 889 (1252)
..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|++
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLT-NGPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEe-CCcEecccCc
Confidence 9999999998764 899999999975 5677899999997 5899988865
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=334.14 Aligned_cols=221 Identities=21% Similarity=0.290 Sum_probs=178.9
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC--CC-eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--GG-IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 478889887663 2458999999999999999999999999999999999864 21 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++.+|++||+.+....+. .....+.++++.++++.+++.+....... ..+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcC
Confidence 87632 2346779999999988888999999987643321 11223344567889999998642111111 1256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|. +|+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~-~G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY-MGD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999976 689999999975 5667899999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 225 i~~~~~~~ 232 (252)
T PRK14256 225 LVECGETK 232 (252)
T ss_pred EEEeCCHH
Confidence 99999864
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=341.35 Aligned_cols=221 Identities=23% Similarity=0.326 Sum_probs=181.7
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++.... ...+.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~-------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNEE-------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCCC-------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 4788999887742100 012469999999999999999999999999999999999887 4689999999886
Q ss_pred Cc----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 731 VQ----HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 731 ~~----~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
.. ...++.+||++|++. .+...|+.|++.|..... .....+.+++++++++.+||.+..++. +..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHA-----PHLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCC
Confidence 43 234677999999974 234569999999875432 123344556789999999998877665 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|. +|+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~-~~~d~v~~l~-~G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EA-VEADRIIVMD-SGKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HH-hcCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999764 999999999976 34 4599999997 48999
Q ss_pred EecCCCC
Q 000853 885 YSGPLGQ 891 (1252)
Q Consensus 885 ~~g~~~~ 891 (1252)
+.|++++
T Consensus 224 ~~g~~~~ 230 (280)
T PRK13633 224 MEGTPKE 230 (280)
T ss_pred EecCHHH
Confidence 9998743
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=320.07 Aligned_cols=190 Identities=58% Similarity=0.951 Sum_probs=161.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++.+ .+++.+|+|+||++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 47888998876421 012468999999999999999999999999999999999753225689999999886
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
. ...++.++|++|++.+++.+|++||+.+...++ +|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 4 345667899999998888999999998753110 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++.++.+.+|++++|.++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999987799999999998644567899999997548998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=344.84 Aligned_cols=194 Identities=32% Similarity=0.467 Sum_probs=167.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF--VPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++++||||||||||+|+|+|++.|+ +|+|.++|.+.... ..++.+||++|++.+++.+||+||+.|.+.+++..
T Consensus 33 i~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~ 109 (293)
T COG1131 33 IFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS 109 (293)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC
Confidence 47999999999999999999999997 99999999887652 34567999999999999999999999999876532
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
.. ..+.+++++++.+||++..++++++ ||+||||||+||+|
T Consensus 110 ~~----------------------------------~~~~~~~~~l~~~~L~~~~~~~~~~-----lS~G~kqrl~ia~a 150 (293)
T COG1131 110 KE----------------------------------EAEERIEELLELFGLEDKANKKVRT-----LSGGMKQRLSIALA 150 (293)
T ss_pred hh----------------------------------HHHHHHHHHHHHcCCchhhCcchhh-----cCHHHHHHHHHHHH
Confidence 10 0122468899999999866777765 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFF 237 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f 237 (1252)
|+++|++|||||||+|||+.++.++++.|+++++..+.|++++ +|...++..+||+|++|++|++++.|+.+++...+
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlis-sH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~ 228 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLS-THILEEAEELCDRVIILNDGKIIAEGTPEELKEKF 228 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEe-CCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhh
Confidence 9999999999999999999999999999999987544566665 56677999999999999999999999988876654
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=346.23 Aligned_cols=214 Identities=24% Similarity=0.383 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|++++|+.+ +.++|+|+||++++||++||+|+||||||||++.|+|... +.+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 68999999988643 3469999999999999999999999999999999999877 4599999999885
Q ss_pred C---cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCC
Q 000853 731 V---QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIK-------YSLVGLPG 800 (1252)
Q Consensus 731 ~---~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~g~~~ 800 (1252)
. ++++++.+++++|...++ .-|++|||.++. ++.+ +|.+.++++.+||.+.. ++.+|+.
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF-~~Tlr~NL~lA~-----~~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge~- 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLF-SGTLRDNLRLAN-----PDAS----DEELWAALQQVGLEKLLESAPDGLNTWLGEG- 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHH-HHHHHHHHhhcC-----CCCC----HHHHHHHHHHcCHHHHHHhChhhhhchhccC-
Confidence 4 344677899999987654 579999998752 2333 45588999999997653 3456654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
.+.||||||||++|||+|++|.++++|||||.|||+.|++++++.|.+-++ |+|+|++||+.. -.+.||+|++|. +
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~-~ 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLD-N 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEE-C
Confidence 478999999999999999999999999999999999999999999998775 899999999864 468999999997 5
Q ss_pred cEEEEecCCCCc
Q 000853 881 GRIIYSGPLGQH 892 (1252)
Q Consensus 881 G~~~~~g~~~~~ 892 (1252)
|+++++|..++.
T Consensus 548 Gkiie~G~~~~L 559 (573)
T COG4987 548 GKIIEEGTHAEL 559 (573)
T ss_pred CeeeecCCHHhh
Confidence 999999997653
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=329.58 Aligned_cols=212 Identities=27% Similarity=0.390 Sum_probs=179.0
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
.++|+++.++ .+.+++|+|+++++||+++|+||||||||||+++|+|..+ +..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 4677776552 2469999999999999999999999999999999999887 458999999987643
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000853 733 H-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKR 811 (1252)
Q Consensus 733 ~-~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqr 811 (1252)
. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++. +..||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHH
Confidence 2 235678999999988888999999988755432 22334455678899999998776655 46899999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCC
Q 000853 812 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 812 v~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 889 (1252)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|. +|++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~-~G~~~~~~~~ 215 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMN-KGKIQQIGTP 215 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEecCCH
Confidence 99999999999999999999999999999999999999864 899999999975 4667899999997 4899998875
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=336.74 Aligned_cols=220 Identities=23% Similarity=0.280 Sum_probs=177.7
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC---CeEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 588999988763 24589999999999999999999999999999999998753 13689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++. |+.||+.+....+.. .....+..+++.++++.+++.+...... ...+.
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcc
Confidence 88642 2345679999999887764 999999987543321 1122334566888999999964211111 11256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+...+|++++|. +|+
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~-~G~ 239 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH-LGN 239 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999965 789999999975 4567789999997 589
Q ss_pred EEEecCC
Q 000853 883 IIYSGPL 889 (1252)
Q Consensus 883 ~~~~g~~ 889 (1252)
++..|++
T Consensus 240 i~~~g~~ 246 (267)
T PRK14235 240 LVEVGDT 246 (267)
T ss_pred EEEeCCH
Confidence 9999975
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=331.56 Aligned_cols=213 Identities=25% Similarity=0.400 Sum_probs=179.1
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+|+|+|+++.+||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 4667776552 2469999999999999999999999999999999999876 458999999988643
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000853 733 H-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKR 811 (1252)
Q Consensus 733 ~-~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqr 811 (1252)
. ..++.++|++|++.+++..|+.||+.+....+. .......+.++++++.+++.+..++. +++||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRY-----PNQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHHH
Confidence 2 235679999999988888999999988754331 22233445678999999997766654 46899999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 812 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 812 v~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|+.+
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~ 216 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMS-NGKIEQIGSPD 216 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEE-CCEEEEecCHH
Confidence 99999999999999999999999999999999999998765 899999999975 4667899999997 58999999864
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=369.37 Aligned_cols=222 Identities=22% Similarity=0.310 Sum_probs=185.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+||||++++||+++|+||||||||||+|+|+|..++++.+|+|.++|.++
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 478889887662 2469999999999999999999999999999999999876433689999999886
Q ss_pred Cccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQHT----FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~~~----~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
.... .++.+||++|++.+++.+||+||+.+....+.......++..++++++++.+++.+..+.. +.+|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP-----VGNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCH
Confidence 4321 2456999999998889999999998865432111112334456788999999998776655 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||+++ ++.+.+|++++|. +|++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~-~G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIR-DGRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEE-CCEEeee
Confidence 9999999999999999999999999999999999999999999877999999999975 4667789999997 5899999
Q ss_pred cCCCCc
Q 000853 887 GPLGQH 892 (1252)
Q Consensus 887 g~~~~~ 892 (1252)
|++++.
T Consensus 225 ~~~~~~ 230 (506)
T PRK13549 225 RPAAGM 230 (506)
T ss_pred cccccC
Confidence 998764
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=337.86 Aligned_cols=220 Identities=20% Similarity=0.260 Sum_probs=176.6
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC---CeEEEEEEEC
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIG 726 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 726 (1252)
..++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3588999988763 24589999999999999999999999999999999998652 1368999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000853 727 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801 (1252)
Q Consensus 727 g~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 801 (1252)
|.++.. ..+++.++|++|++.+++ .||+||+.+....+. .. ...++++.++++.+++........ +..+
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~ 152 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKL-NESG 152 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhh-CCCc
Confidence 987531 234567999999998777 499999998764432 11 123455778888887743111111 1225
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec--
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN-- 879 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~-- 879 (1252)
.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|++++|.+
T Consensus 153 ~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~ 230 (269)
T PRK14259 153 YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEE 230 (269)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccc
Confidence 68999999999999999999999999999999999999999999999964 799999999975 57788999999985
Q ss_pred --------CcEEEEecCCC
Q 000853 880 --------GGRIIYSGPLG 890 (1252)
Q Consensus 880 --------~G~~~~~g~~~ 890 (1252)
.|++++.|+++
T Consensus 231 ~~~~~~g~~g~~~~~~~~~ 249 (269)
T PRK14259 231 VEGGSGGKVGYLVEFNETK 249 (269)
T ss_pred cccccccccceEEEeCCHH
Confidence 36789999864
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=325.20 Aligned_cols=193 Identities=23% Similarity=0.308 Sum_probs=145.9
Q ss_pred eEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHH
Q 000853 684 TGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAW 763 (1252)
Q Consensus 684 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~ 763 (1252)
.++|..||+++++||||-||||+.++|+|..+ |++|+ ..+ -.++|=||--.-....||++-+.-...
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~~-------~~vSyKPQyI~~~~~gtV~~~l~~~~~ 427 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EED-------LKVSYKPQYISPDYDGTVEDLLRSAIR 427 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Ccc-------ceEeecceeecCCCCCcHHHHHHHhhh
Confidence 45688899999999999999999999999887 44776 111 146888887555567899998764432
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 000853 764 LRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 843 (1252)
Q Consensus 764 l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~ 843 (1252)
-+... .-...++.+-++|.+..+..+ .+|||||.|||+||.+|.+++++.+||||++.||.+.+..+-
T Consensus 428 ~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~va 495 (591)
T COG1245 428 SAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVA 495 (591)
T ss_pred hhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHH
Confidence 21111 123457788888888877764 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec---CCCCcchhHHHHHhhCC
Q 000853 844 RAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG---PLGQHSCKVIDYFESIP 904 (1252)
Q Consensus 844 ~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g---~~~~~~~~~~~~f~~~~ 904 (1252)
+.|+++.++ ++|.+++-||.-+ +.-..|++++.. |+---+| +|...++.+..|.+.++
T Consensus 496 kvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~--GePg~~g~a~~P~~mr~GMN~FLk~l~ 557 (591)
T COG1245 496 KVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE--GEPGKHGHASPPMSMREGMNRFLKNLG 557 (591)
T ss_pred HHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe--cCCCccCcCCCCccHHHHHHHHHHHcC
Confidence 999999854 8999999998653 334557777664 3332222 23334566778888773
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=334.20 Aligned_cols=220 Identities=22% Similarity=0.274 Sum_probs=176.5
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC-CeEEEEEEECCeeC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG-GIIEGDIRIGGYPK 730 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 730 (1252)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|+++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56778877653 24589999999999999999999999999999999997642 24689999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
.. ..+++.++|++|++.+++ .|++||+.+....+.... ..+..++++.++++.+++.+...... +..+++||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHH
Confidence 43 234667999999988776 699999998754432111 12334456788999999953211111 1124689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~~g 223 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFH-LGELIEFG 223 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEE-CCEEEEEC
Confidence 99999999999999999999999999999999999999999865 899999999975 4667899999997 58999999
Q ss_pred CCC
Q 000853 888 PLG 890 (1252)
Q Consensus 888 ~~~ 890 (1252)
+..
T Consensus 224 ~~~ 226 (246)
T PRK14269 224 ESK 226 (246)
T ss_pred CHH
Confidence 863
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=333.91 Aligned_cols=210 Identities=25% Similarity=0.337 Sum_probs=174.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 367888887652 2458999999999999999999999999999999999876 4589999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCH
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~lSg 806 (1252)
.. ...++.++|++|++.+++ .|++||+.+....+ . . ..+++.++++.+++. +..++. +..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G-E---KNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C-c---HHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 42 234567999999987776 69999998754322 1 1 134577889999996 444433 568999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLN-KGILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEe-CCEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999975 4667899999997 589999
Q ss_pred ecCCC
Q 000853 886 SGPLG 890 (1252)
Q Consensus 886 ~g~~~ 890 (1252)
.|++.
T Consensus 213 ~~~~~ 217 (241)
T PRK14250 213 YAKTY 217 (241)
T ss_pred eCCHH
Confidence 88863
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=331.21 Aligned_cols=201 Identities=29% Similarity=0.408 Sum_probs=169.4
Q ss_pred cccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc--ccccceEEEEc-cCCCCCCC
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCE-QNDIHSPN 751 (1252)
Q Consensus 675 ~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~ 751 (1252)
+.+++|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 45679999999999999999999999999999999999877 468999999987432 23456789997 55667788
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000853 752 ITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 831 (1252)
Q Consensus 752 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPT 831 (1252)
+|++|++.+...++. ...++..+.+.++++.+++.+..++. +..||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTP-----VRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999999988755432 22334455678899999998777665 4589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 832 SGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 832 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
+|||+.++..+.+.|++++++ ++|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVID-KGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEecC
Confidence 999999999999999999764 899999999975 4667889999997 48888765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=329.58 Aligned_cols=195 Identities=28% Similarity=0.383 Sum_probs=165.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
+++|+||||||||||||+|+|.++|. +|+|.++|+++..... .+.++||||.....+.+||+|-+.++..-...
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 58999999999999999999999987 9999999999876554 46799999998888899999999987532100
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
... .+.+ ++...++++|+.+|+.+-+++.+.+ |||||||||.|||
T Consensus 107 --~~~-------------~~~~---------------~D~~~v~~aL~~~~~~~la~r~~~~-----LSGGerQrv~iAr 151 (258)
T COG1120 107 --LFG-------------RPSK---------------EDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRVLIAR 151 (258)
T ss_pred --ccc-------------CCCH---------------hHHHHHHHHHHHhCcHHHhcCcccc-----cChhHHHHHHHHH
Confidence 000 0000 1122468889999999999999987 9999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
||+++|+||+||||||+||...+.++++.++++.+..|.|+|+++ |+...+.++||++++|++|+++.+|+++++.
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vl-HDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVL-HDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEe-cCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 999999999999999999999999999999999987777777765 5667899999999999999999999987764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=340.03 Aligned_cols=220 Identities=20% Similarity=0.316 Sum_probs=177.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++... ...+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 478899988764210 001358999999999999999999999999999999999887 4589999999875
Q ss_pred Cc--------ccccceEEEEccCCCC-CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000853 731 VQ--------HTFARISGYCEQNDIH-SPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPG 800 (1252)
Q Consensus 731 ~~--------~~~~~~~~~v~q~~~~-~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~ 800 (1252)
.. ..+++.++|++|++.. ....|++||+.|....+ ....++..+++.++++.++|. +..++.
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 31 2345679999999742 23469999998865322 123344446678899999994 455543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|.
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~- 225 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMH- 225 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-
Confidence 4689999999999999999999999999999999999999999999998764 899999999975 5677899999997
Q ss_pred CcEEEEecCCC
Q 000853 880 GGRIIYSGPLG 890 (1252)
Q Consensus 880 ~G~~~~~g~~~ 890 (1252)
+|++++.|+++
T Consensus 226 ~G~i~~~g~~~ 236 (289)
T PRK13645 226 EGKVISIGSPF 236 (289)
T ss_pred CCEEEEeCCHH
Confidence 58999998863
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=336.59 Aligned_cols=220 Identities=24% Similarity=0.370 Sum_probs=177.3
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC------eEEEEEEE
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG------IIEGDIRI 725 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~------~~~G~i~~ 725 (1252)
++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 56778877552 346999999999999999999999999999999999987632 01799999
Q ss_pred CCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000853 726 GGYPKVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLS-PEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801 (1252)
Q Consensus 726 ~g~~~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 801 (1252)
+|.+... ..+++.++|++|++..++.+|++||+.+....+.. .....++..++++++++.+++.+..++. +
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9987542 23455689999998766679999999875321110 0111123345688999999998765544 4
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHh
Q 000853 802 SGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAF 871 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~---------~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~ 871 (1252)
..|||||||||+|||+|+ .+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++...+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 689999999999999999 599999999999999999999999999999875 899999999975 566789
Q ss_pred cceeeeecCcEEEEecCCCC
Q 000853 872 DDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 872 d~~~~l~~~G~~~~~g~~~~ 891 (1252)
|++++|. +|++++.|++++
T Consensus 223 d~i~~l~-~G~i~~~g~~~~ 241 (272)
T PRK13547 223 DRIAMLA-DGAIVAHGAPAD 241 (272)
T ss_pred CEEEEEE-CCeEEEecCHHH
Confidence 9999997 589999998754
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=319.15 Aligned_cols=177 Identities=26% Similarity=0.385 Sum_probs=154.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
+++|+||||||||||||+|+|+.+|+ +|+|.++|.+++ .+...++||+|++.++|..||+||+.|+.+.++...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~- 104 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSK- 104 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHHhhheehhhccccch-
Confidence 47999999999999999999999997 999999999883 456678999999999999999999999886643110
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
. +.+.++++.|+..||.+..|....+ |||||||||+|||||+
T Consensus 105 ---------~------------------------e~~~~a~~~L~~VgL~~~~~~~P~q-----LSGGMrQRVaiARAL~ 146 (248)
T COG1116 105 ---------A------------------------EARERAKELLELVGLAGFEDKYPHQ-----LSGGMRQRVAIARALA 146 (248)
T ss_pred ---------H------------------------hHHHHHHHHHHHcCCcchhhcCccc-----cChHHHHHHHHHHHHh
Confidence 0 0112467899999999999988766 9999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCC
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEG 222 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G 222 (1252)
.+|+||+||||+++||+.|+.++.+.|.++.+..+.|++ .++|..+|+..++|||++|+++
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tvl-lVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL-LVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEE-EEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999999998887666655 5678889999999999999984
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=348.06 Aligned_cols=192 Identities=22% Similarity=0.373 Sum_probs=168.1
Q ss_pred ceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-------ccccceEEEEccCCCCCCCCCH
Q 000853 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-------HTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 682 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999877 458999999987532 1245679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000853 755 EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgL 834 (1252)
+||+.|+.. ...+++++++++.++|.+..+.. +++|||||||||+|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988632 11235688999999998776665 4689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 835 DARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 835 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
|+.++..+++.|+++.++ |+|+|++||+++ ++...+|++++|. +|+++..|++++
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~-~G~i~~~g~~~~ 215 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLE-QGKVKAFGPLEE 215 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEe-CCEEEEecCHHH
Confidence 999999999999999865 899999999975 5778899999997 589999998754
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=343.05 Aligned_cols=205 Identities=29% Similarity=0.429 Sum_probs=175.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++++|||||||||||++|+|+..|+ +|+|.++|++++...+ ++.+++|+|+-.+||++||+||+.|+.+.+....
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~ 109 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLK 109 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCC
Confidence 36899999999999999999999998 9999999999998766 5679999999999999999999999986432110
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
++ +.+.+++++++.++|++..+..+.+ |||||||||+|||||
T Consensus 110 -----~~----------------------------~i~~rv~e~L~lV~L~~~~~R~p~q-----LSGGQqQRVALARAL 151 (352)
T COG3842 110 -----KA----------------------------EIKARVEEALELVGLEGFADRKPHQ-----LSGGQQQRVALARAL 151 (352)
T ss_pred -----HH----------------------------HHHHHHHHHHHHcCchhhhhhChhh-----hChHHHHHHHHHHHh
Confidence 00 0123578899999999988888766 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHHHh
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFED 239 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f~~ 239 (1252)
+.+|++||||||.|+||..-+.++..-++++.+..|.|.|. ++|+..|.+.++|||+||++|+|...|+++++
T Consensus 152 ~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~-VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei------ 224 (352)
T COG3842 152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVY-VTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI------ 224 (352)
T ss_pred hcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEE-EECCHHHHhhhccceEEccCCceeecCCHHHH------
Confidence 99999999999999999999999999999999887666554 67888899999999999999999999999998
Q ss_pred cCCCCCCCCChhHHHH
Q 000853 240 CGFRCPERKGVADFLQ 255 (1252)
Q Consensus 240 ~G~~~p~~~~~ad~~~ 255 (1252)
|..|...-.|+|+-
T Consensus 225 --Y~~P~~~fVA~FiG 238 (352)
T COG3842 225 --YERPATRFVADFIG 238 (352)
T ss_pred --hhCcchHHHHHHhC
Confidence 44555554556553
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=335.85 Aligned_cols=225 Identities=19% Similarity=0.280 Sum_probs=180.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.+..+.. +...+.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 3788999887742100 000112469999999999999999999999999999999999887 4689999999876
Q ss_pred Ccc---cccceEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCC
Q 000853 731 VQH---TFARISGYCEQNDI--HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVSGL 804 (1252)
Q Consensus 731 ~~~---~~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~l 804 (1252)
... ..++.++|++|++. +.+.+|+.|++.+....+. ....+...+.++++++.+++. +..+.. +.+|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhc
Confidence 421 23456899999974 4677899999988654331 123334456788999999994 444443 4689
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 805 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 805 SgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|++
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~-~G~i 228 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMH-QGEV 228 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999764 899999999975 5666799999997 5899
Q ss_pred EEecCCC
Q 000853 884 IYSGPLG 890 (1252)
Q Consensus 884 ~~~g~~~ 890 (1252)
++.|+++
T Consensus 229 ~~~~~~~ 235 (267)
T PRK15112 229 VERGSTA 235 (267)
T ss_pred EecCCHH
Confidence 9988763
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=317.21 Aligned_cols=190 Identities=48% Similarity=0.866 Sum_probs=162.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCC--CCCeEEEEEEECCe
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK--TGGIIEGDIRIGGY 728 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~--~~~~~~G~i~~~g~ 728 (1252)
.++++|+++.++... ...++.+|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.+||+
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 578899988774210 001246999999999999999999999999999999999987 6 56899999999
Q ss_pred eCCcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 729 PKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 729 ~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
+......++.++|++|++.+++.+|++||+.+...++ .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8754455678999999998888999999997643110 599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|+++.++.+.+|++++|.+ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999999877999999999986456778999999975 8888764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=327.65 Aligned_cols=200 Identities=26% Similarity=0.377 Sum_probs=171.8
Q ss_pred cccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHHH
Q 000853 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEES 757 (1252)
Q Consensus 679 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~~tv~e~ 757 (1252)
+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999877 5689999999876432 235678999999988889999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 000853 758 VIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837 (1252)
Q Consensus 758 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~ 837 (1252)
+.+...... ....+.++.+.++++.++|.+..++. ++.||||||||++|||||+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKRK---VDKKEIERKVLEIAEMLGIDHLLNRK-----PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHHhcC-----cccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 988653321 22334455678899999998776665 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 838 AAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 838 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|+.+
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 215 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKPE 215 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999999999998764 899999999975 46678999999974 8999998863
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=340.39 Aligned_cols=223 Identities=21% Similarity=0.261 Sum_probs=180.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC---CeEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~~~g 727 (1252)
.++++|+++.+.. +.+.+|+|+||+|++||++||+||||||||||+++|+|.... .+.+|+|.+||
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 5889999987742 124589999999999999999999999999999999997642 24589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ...++.++|+||++.++ ..|++||+.|+..... ....+..++.+.++++.++|.+..++.++. .+.
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~-~~ti~eNi~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~~ 224 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRNNG--INDRKILEKIVEKSLKSAALWDEVKDDLDK-AGN 224 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccC-CCcHHHHHHhHHHhcC--CChHHHHHHHHHHHHHHcCCcchhhhhhhC-Ccc
Confidence 98742 24567899999999876 4799999998643321 111222334577888998885433333433 357
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||+++ .+.+.+|++++|. +|+
T Consensus 225 ~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~-~G~ 301 (329)
T PRK14257 225 ALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFY-QGW 301 (329)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999876 799999999975 4556699999997 589
Q ss_pred EEEecCCCC
Q 000853 883 IIYSGPLGQ 891 (1252)
Q Consensus 883 ~~~~g~~~~ 891 (1252)
+++.|++.+
T Consensus 302 i~e~g~~~~ 310 (329)
T PRK14257 302 IEEAGETKT 310 (329)
T ss_pred EEEeCCHHH
Confidence 999999743
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=369.15 Aligned_cols=124 Identities=26% Similarity=0.362 Sum_probs=103.4
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC---cEEE
Q 000853 751 NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-KYSLVGLPGVSGLSTEQRKRLTIAVELVANP---SIIF 826 (1252)
Q Consensus 751 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p---~ill 826 (1252)
.+|+.|++.|...+.. .....+.++.+||.+. .+.. +..||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~~---------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIPK---------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhchh---------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 3789999998765421 1124678999999753 3333 4689999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee-----cCcEEEEecCCC
Q 000853 827 MDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK-----NGGRIIYSGPLG 890 (1252)
Q Consensus 827 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~~~~g~~~ 890 (1252)
|||||+|||+.+...+++.|+++.++|.|||+++|+++ ....+|+++.|. ++|++++.|+++
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 99999999999999999999999878999999999864 456899999994 579999999874
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=333.43 Aligned_cols=220 Identities=21% Similarity=0.288 Sum_probs=177.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC--C-eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--G-IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~--~-~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|...+ . +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 588999987653 24589999999999999999999999999999999997652 1 2489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++. |++||+.+....+.. ...++..++++++++.+++.+...... ...+.
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGT--KNKKKLQEIVEKSLKDVALWDEVKDRL-HTQAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcc
Confidence 87632 2345679999999887775 999999886543311 123344456788899998854211111 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|. +|+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~-~G~ 231 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFY-MGE 231 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999965 799999999975 5667899999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
++..|+++
T Consensus 232 i~~~g~~~ 239 (259)
T PRK14274 232 LVECNDTN 239 (259)
T ss_pred EEEECCHH
Confidence 99999864
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=349.20 Aligned_cols=195 Identities=23% Similarity=0.376 Sum_probs=169.3
Q ss_pred ceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-------ccccceEEEEccCCCCCCCCCH
Q 000853 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-------HTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 682 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999887 458999999987532 1245679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000853 755 EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgL 834 (1252)
+||+.|+.... ...+.+++++++++.++|.+..++. +.+|||||||||+|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRL-----PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999875321 1223455688999999998777665 4689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 835 DARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 835 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
|+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|++++.|+++
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 217 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLE-DGRVAAAGPIA 217 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEEECCHH
Confidence 999999999999999865 899999999975 5667899999997 58999999864
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=376.68 Aligned_cols=210 Identities=26% Similarity=0.363 Sum_probs=178.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.|+. .++.+|+|+|++|+|||++||+|+||||||||+|+|+|.++ |.+|+|.+||+++
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEc
Confidence 5899999998842 13469999999999999999999999999999999999987 4589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-------KYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~g~~~ 800 (1252)
.. ..+|+.+|||+|++.++. -|++||+.++. + .+ +++++++++..++.+. .|+.+|..
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~-----~-~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~- 585 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA-----P-LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG- 585 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC-----C-CC----HHHHHHHHHHcCcHHHHHhccccccccccCC-
Confidence 53 467889999999998765 69999998742 1 22 2446777887777643 46667655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ ++|+|++||++ +..+.+|++++|+ +
T Consensus 586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~--~~i~~~D~Iivl~-~ 659 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRL--STIRNADRIYVLD-A 659 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecCh--HHHHcCCEEEEEE-C
Confidence 3689999999999999999999999999999999999999999999886 58999999986 4567899999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|+.++
T Consensus 660 G~iv~~G~~~~ 670 (686)
T TIGR03797 660 GRVVQQGTYDE 670 (686)
T ss_pred CEEEEECCHHH
Confidence 99999999654
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=331.61 Aligned_cols=220 Identities=23% Similarity=0.260 Sum_probs=177.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 478889887652 245899999999999999999999999999999999976531 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ...++.++|++|++.+++ .|++||+.|....... ...++..++++++++.+++.+...... ...+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 146 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDL-KKSAL 146 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHh-hCCcc
Confidence 88642 134567999999998776 8999999987543321 122334456788999998753111111 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|. +|+
T Consensus 147 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~-~G~ 223 (251)
T PRK14270 147 KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL-MGD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE-CCe
Confidence 8999999999999999999999999999999999999999999999876 699999999975 5667899999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 224 i~~~~~~~ 231 (251)
T PRK14270 224 LIEFNKTE 231 (251)
T ss_pred EEEeCCHH
Confidence 99999864
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=335.96 Aligned_cols=217 Identities=25% Similarity=0.348 Sum_probs=181.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++.. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 47899998876321 12358999999999999999999999999999999999887 5689999999886
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQ---HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
.. ...++.+||++|++. .++..||.||+.+..... ....++..++++++++.++|.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234667999999974 567789999998765432 123344456788999999998766654 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|.+ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EA-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999975 34 46999999975 89999
Q ss_pred ecCCC
Q 000853 886 SGPLG 890 (1252)
Q Consensus 886 ~g~~~ 890 (1252)
.|+++
T Consensus 221 ~g~~~ 225 (277)
T PRK13642 221 EAAPS 225 (277)
T ss_pred eCCHH
Confidence 99864
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=324.99 Aligned_cols=191 Identities=26% Similarity=0.382 Sum_probs=163.2
Q ss_pred ceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-------ccccceEEEEccCCCCCCCCCH
Q 000853 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-------HTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 682 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
|+||++++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999877 458999999987531 1245679999999988889999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000853 755 EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgL 834 (1252)
+||+.+..... ..+..++++.++++.+++.+..+.. +.+||||||||++||++|+.+|++++|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 2233455688999999998765544 4689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 835 DARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 835 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|+.+++.+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVME-DGRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 999999999999999865 899999999975 4667899999997 48888765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=332.39 Aligned_cols=221 Identities=22% Similarity=0.291 Sum_probs=178.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-e--EEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-I--IEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~--~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478899987663 245899999999999999999999999999999999986532 2 489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ...++.++|++|++.+++ .|++||+.+....+. .....+.++.+.++++.+++.+...... +..+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 149 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKL-NKSAL 149 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHh-cCCcc
Confidence 87532 234567999999998877 899999988754332 1122334456788899888843211111 12356
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec---
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN--- 879 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~--- 879 (1252)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.+
T Consensus 150 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~ 227 (259)
T PRK14260 150 GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDES 227 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCC
Confidence 8999999999999999999999999999999999999999999999865 699999999986 57788999999973
Q ss_pred -CcEEEEecCCC
Q 000853 880 -GGRIIYSGPLG 890 (1252)
Q Consensus 880 -~G~~~~~g~~~ 890 (1252)
+|++++.|+++
T Consensus 228 ~~G~i~~~~~~~ 239 (259)
T PRK14260 228 RIGQMVEFGVTT 239 (259)
T ss_pred CCceEEEeCCHH
Confidence 59999999864
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=327.37 Aligned_cols=212 Identities=23% Similarity=0.329 Sum_probs=175.7
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++. + ..|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 567888877631 1 138999999999999999999999999999999877 45899999998754
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 732 QH-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 732 ~~-~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
.. ..++.++|++|++.+++.+|+.||+.+..... ... .+..++++.++++.+++.+..++. +..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLHAIARQMGIEDLLARL-----PGQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhcccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCC-----cccCCHHHHH
Confidence 32 23457899999998888899999998753211 111 123355688999999998776665 4689999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCC
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 889 (1252)
|++|||+++.+|++++|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|. +|++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVA-DGRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999999999999998764 899999999975 4667789999997 5899999986
Q ss_pred C
Q 000853 890 G 890 (1252)
Q Consensus 890 ~ 890 (1252)
+
T Consensus 215 ~ 215 (232)
T PRK10771 215 D 215 (232)
T ss_pred H
Confidence 4
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=294.09 Aligned_cols=207 Identities=24% Similarity=0.339 Sum_probs=175.4
Q ss_pred ccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-------------c---cccc
Q 000853 674 QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-------------H---TFAR 737 (1252)
Q Consensus 674 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------------~---~~~~ 737 (1252)
++...+||+||++.++|+.+.|+|.|||||||+|+||.-+.. |..|.|.+||..+.. + ..|.
T Consensus 16 ~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs 93 (256)
T COG4598 16 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRT 93 (256)
T ss_pred cccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHH
Confidence 356779999999999999999999999999999999997766 568999999975321 1 1344
Q ss_pred eEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHH
Q 000853 738 ISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVE 817 (1252)
Q Consensus 738 ~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~a 817 (1252)
..|+|+|+..++..+||.||+.-+- .+ ....++.+..++.+..|..+|+.+.++.. +..|||||+||++||||
T Consensus 94 ~L~mVFQ~FNLWsHmtvLeNViEaP-vh-VLg~~k~ea~e~Ae~~L~kVGi~ek~~~Y-----P~~LSGGQQQR~aIARa 166 (256)
T COG4598 94 RLGMVFQHFNLWSHMTVLENVIEAP-VH-VLGVSKAEAIERAEKYLAKVGIAEKADAY-----PAHLSGGQQQRVAIARA 166 (256)
T ss_pred HhhHhhhhcchhHHHHHHHHHHhcc-hH-hhcCCHHHHHHHHHHHHHHhCchhhhhcC-----ccccCchHHHHHHHHHH
Confidence 5799999999999999999997542 11 12345677788899999999999998865 56899999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 818 LVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 818 l~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
|+.+|+++++|||||.|||+-.-++.+.+++++++|+|.+++||.+.. .-+...+++.+. .|.|.++|||++
T Consensus 167 LameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh-~G~iEE~G~P~q 238 (256)
T COG4598 167 LAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLH-QGKIEEEGPPEQ 238 (256)
T ss_pred HhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEee-cceecccCChHH
Confidence 999999999999999999999999999999999999999999997543 334457777886 599999999853
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=331.86 Aligned_cols=220 Identities=25% Similarity=0.305 Sum_probs=175.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC--CC-eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--GG-IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478899987663 2458999999999999999999999999999999999743 21 2489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++ .|++||+.+....+. ....+..++.+.++++.+++.+...... ...+.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 147 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRL-HDSAL 147 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHH-hcCcc
Confidence 87632 234567999999988776 899999988754332 1122333456788899988753211111 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|. +|+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~G~ 224 (252)
T PRK14239 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL-DGD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999865 699999999975 5677899999997 489
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+.+
T Consensus 225 i~~~g~~~ 232 (252)
T PRK14239 225 LIEYNDTK 232 (252)
T ss_pred EEEeCCHH
Confidence 99999864
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=331.30 Aligned_cols=220 Identities=22% Similarity=0.309 Sum_probs=178.9
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 578999988763 246899999999999999999999999999999999987631 3689999999
Q ss_pred eeCCc----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000853 728 YPKVQ----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSG 803 (1252)
Q Consensus 728 ~~~~~----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 803 (1252)
.++.. ..+++.++|++|++.+++ .|++||+.+...... ....++..+.+.++++.+++.+..++... ..+.+
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87642 234667999999988777 899999987643221 12333444566788899998653221111 22568
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 804 lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|+++++ ++|||++||+++ ++.+.+|++++|.+ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999976 589999999975 56778999999974 899
Q ss_pred EEecCCC
Q 000853 884 IYSGPLG 890 (1252)
Q Consensus 884 ~~~g~~~ 890 (1252)
++.|+++
T Consensus 241 ~~~g~~~ 247 (276)
T PRK14271 241 VEEGPTE 247 (276)
T ss_pred EEeCCHH
Confidence 9999864
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=323.50 Aligned_cols=189 Identities=25% Similarity=0.373 Sum_probs=161.4
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC---cc----cccceEEEEccCCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV---QH----TFARISGYCEQNDIHS 749 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~~----~~~~~~~~v~q~~~~~ 749 (1252)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++. .. ..++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 469999999999999999999999999999999999877 46899999998742 11 2356799999999888
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000853 750 PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 829 (1252)
Q Consensus 750 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDE 829 (1252)
+..|++||+.+....+. ....+..++++++++.+++.+..++. +.+||||||||++|||||+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYKK---LSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 88999999998654321 22334456788999999998776655 46899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeee
Q 000853 830 PTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILM 877 (1252)
Q Consensus 830 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 877 (1252)
||+|||+.++..+.+.|+++.++|.|||++||+++ ..+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999877899999999974 45678888764
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=332.86 Aligned_cols=220 Identities=23% Similarity=0.297 Sum_probs=175.5
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC---CeEEEEEEEC
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIG 726 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 726 (1252)
..++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 38 ~~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~ 104 (285)
T PRK14254 38 TVIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFR 104 (285)
T ss_pred ceEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEEC
Confidence 3588999987662 24599999999999999999999999999999999998652 1368999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000853 727 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801 (1252)
Q Consensus 727 g~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 801 (1252)
|.++.. ..+++.++|++|++.+++. |+.||+.+....+.. .. ..+++++++++.+++.+...... ...+
T Consensus 105 G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~---~~-~~~~~~~~~l~~~~l~~~i~~~~-~~~~ 178 (285)
T PRK14254 105 GKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGY---DG-DIDERVEESLRRAALWDEVKDQL-DSSG 178 (285)
T ss_pred CEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCC---cH-HHHHHHHHHHHHcCCCchhHHHH-hCCc
Confidence 987532 2346689999999877775 999999887544321 12 23456888999998853111111 1125
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
.+||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...+|+++++.++|
T Consensus 179 ~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l~~G 256 (285)
T PRK14254 179 LDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFLTGG 256 (285)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEeeCC
Confidence 68999999999999999999999999999999999999999999999976 489999999975 4566789876554469
Q ss_pred EEEEecCCC
Q 000853 882 RIIYSGPLG 890 (1252)
Q Consensus 882 ~~~~~g~~~ 890 (1252)
++++.|++.
T Consensus 257 ~i~~~g~~~ 265 (285)
T PRK14254 257 ELVEFDDTD 265 (285)
T ss_pred EEEEeCCHH
Confidence 999998863
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=328.28 Aligned_cols=202 Identities=24% Similarity=0.341 Sum_probs=167.1
Q ss_pred cccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC--eEEEEEEECCeeCCcccc-cceEEEEccCCC--CCCCCC
Q 000853 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG--IIEGDIRIGGYPKVQHTF-ARISGYCEQNDI--HSPNIT 753 (1252)
Q Consensus 679 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~~~~-~~~~~~v~q~~~--~~~~~t 753 (1252)
+++|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 478999999999999999999999999999999987631 158999999988654333 357899999984 556789
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000853 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG---IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 830 (1252)
Q Consensus 754 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEP 830 (1252)
+.|++.+....... ..+..++++.++++.+++.+ ..+.. +..|||||||||+|||+|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGK---LSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCc---cHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999876543211 12334566889999999973 33333 468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 831 TSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 831 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|+++..|+++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 211 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMD-DGRIVERGTVK 211 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 9999999999999999999764 899999999975 5667899999997 58999998863
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=330.03 Aligned_cols=220 Identities=21% Similarity=0.307 Sum_probs=175.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC--CC-eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--GG-IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 727 (1252)
.-+++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 71 (251)
T PRK14244 5 HASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDG 71 (251)
T ss_pred EEEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECC
Confidence 346677776552 2468999999999999999999999999999999999864 21 3589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ...++.++|++|++.+++. |+.||+.+....+.. ....+..++.+.++++.+++.+...+... ..+.
T Consensus 72 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 148 (251)
T PRK14244 72 IDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGL-AKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAF 148 (251)
T ss_pred EehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChh
Confidence 87532 1346679999999887775 999999886433321 11223344567889999998652211111 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.+|++++|.+ |+
T Consensus 149 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~-G~ 225 (251)
T PRK14244 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQS-GR 225 (251)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999864 899999999975 56678999999974 89
Q ss_pred EEEecCC
Q 000853 883 IIYSGPL 889 (1252)
Q Consensus 883 ~~~~g~~ 889 (1252)
+++.|++
T Consensus 226 i~~~~~~ 232 (251)
T PRK14244 226 IVEYNTT 232 (251)
T ss_pred EEEeCCH
Confidence 9999886
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=329.88 Aligned_cols=219 Identities=25% Similarity=0.335 Sum_probs=176.7
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECCe
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGGY 728 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g~ 728 (1252)
++++|+++.++ ++.+++|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 77888887652 245899999999999999999999999999999999976531 26899999998
Q ss_pred eCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000853 729 PKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSG 803 (1252)
Q Consensus 729 ~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 803 (1252)
++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.+++.++.+++.+..+... ...+.+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGV--KSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCchhHHHH-hCChhh
Confidence 7642 134567999999998777 8999999986543211 122334456788899988864211111 223578
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 804 lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.+ |++
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i 223 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GEL 223 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999875 799999999975 46778999999975 899
Q ss_pred EEecCCC
Q 000853 884 IYSGPLG 890 (1252)
Q Consensus 884 ~~~g~~~ 890 (1252)
+..|+++
T Consensus 224 ~~~g~~~ 230 (250)
T PRK14262 224 IEYGPTR 230 (250)
T ss_pred EEecCHH
Confidence 9999863
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=328.21 Aligned_cols=219 Identities=25% Similarity=0.333 Sum_probs=175.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+++|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 367888887663 245899999999999999999999999999999999975421 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ...++.++|++|++.+++ .|+.||+.+....+.. ...+..++++.++++.+++.+...... ...+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 145 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRL-KKSAL 145 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCC
Confidence 87642 234667999999988776 8999999987543321 123344566788888888743111111 11256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|.+ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14240 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLN-GE 222 (250)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999964 899999999965 46678999999975 89
Q ss_pred EEEecCC
Q 000853 883 IIYSGPL 889 (1252)
Q Consensus 883 ~~~~g~~ 889 (1252)
+++.|++
T Consensus 223 i~~~~~~ 229 (250)
T PRK14240 223 IVEFGDT 229 (250)
T ss_pred EEEeCCH
Confidence 9999875
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=331.50 Aligned_cols=220 Identities=25% Similarity=0.314 Sum_probs=177.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC---CeEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 25 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 25 ALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred EEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 588999988763 24589999999999999999999999999999999998652 13689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+...... ...+.
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 167 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGI--NNRRVLDEAVERSLRGAALWDEVKDRL-HENAF 167 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcc
Confidence 88642 2346789999999888775 999999886543311 122233456788899888864211111 12246
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|++++|. +|+
T Consensus 168 ~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~-~G~ 244 (272)
T PRK14236 168 GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMY-MGK 244 (272)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999976 799999999975 4667899999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 245 i~~~g~~~ 252 (272)
T PRK14236 245 LVEYGDTD 252 (272)
T ss_pred EEecCCHH
Confidence 99999863
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=363.64 Aligned_cols=220 Identities=26% Similarity=0.347 Sum_probs=184.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 378888887662 2468999999999999999999999999999999999887 4589999999876
Q ss_pred Ccc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 731 VQH---T-FARISGYCEQNDIHSPNITVEESVIFSAWLRLS-PEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 731 ~~~---~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
... . .++.++|++|++.+++.+||+||+.++...+.. .....++.++++.++++.+++.+..+.. +.+||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 143 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKL-----VGELS 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCC
Confidence 421 1 245689999999888999999999886432210 1122333456688999999998876655 45899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||+++ ++...||++++|. +|+++.
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~-~G~i~~ 221 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFR-DGQFIA 221 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 5667899999997 589999
Q ss_pred ecCCCCc
Q 000853 886 SGPLGQH 892 (1252)
Q Consensus 886 ~g~~~~~ 892 (1252)
.|++++.
T Consensus 222 ~~~~~~~ 228 (501)
T PRK10762 222 EREVADL 228 (501)
T ss_pred ecCcCcC
Confidence 9998764
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=300.27 Aligned_cols=191 Identities=27% Similarity=0.342 Sum_probs=165.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV--PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+|+|+|||||||||+|++|++++.|+ +|+|+++|.+..+.. .++.+|.++.+..++..+|++|||.|.+++.+..
T Consensus 30 i~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~ 106 (245)
T COG4555 30 ITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLS 106 (245)
T ss_pred EEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhh
Confidence 58999999999999999999999998 999999999875433 3677899887788999999999999998876432
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
+. +.+.+++++.+.|+|.++.|+++|+ +|-|+||||+||||
T Consensus 107 ~~----------------------------------~~kari~~l~k~l~l~~~~~rRv~~-----~S~G~kqkV~iARA 147 (245)
T COG4555 107 RK----------------------------------EIKARIAELSKRLQLLEYLDRRVGE-----FSTGMKQKVAIARA 147 (245)
T ss_pred hh----------------------------------HHHHHHHHHHHHhChHHHHHHHHhh-----hchhhHHHHHHHHH
Confidence 10 1123467888999999999999988 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|+++|++++|||||||||..+.+.+.+.++++.. .|++++. .+|..+|+..+||+|++|++|++++.|+.+.+..
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viF-SSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIF-SSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEE-ecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999999999999999999998864 4566655 4678899999999999999999999999877643
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=329.33 Aligned_cols=221 Identities=25% Similarity=0.310 Sum_probs=176.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCe---EEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI---IEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~---~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+++|+||+|++||+++|+||||||||||+++|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 477888887653 2468999999999999999999999999999999999876432 379999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++.+|+.||+.+...... ....++..+.+.+.++.+++.+...... +..++
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 147 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRL-KTPAT 147 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhh-cCCcc
Confidence 87642 2345679999999988888999999987654321 1122333455677777776642111111 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.+ |+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14272 148 GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLV-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999865 799999999975 56667899999974 89
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 225 i~~~~~~~ 232 (252)
T PRK14272 225 LVEHGPTD 232 (252)
T ss_pred EEEeCCHH
Confidence 99999864
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=330.95 Aligned_cols=216 Identities=24% Similarity=0.307 Sum_probs=175.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee-
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP- 729 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 729 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 478899887653 2458999999999999999999999999999999999877 458999999987
Q ss_pred ----CCcc---c----ccceEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 000853 730 ----KVQH---T----FARISGYCEQNDI--HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSL 795 (1252)
Q Consensus 730 ----~~~~---~----~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~ 795 (1252)
+... . .++.++|++|++. +.+.+|+.||+.+...... .....+.++.+.++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2446899999974 5677899999976432211 1112234556788999999963 44433
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcce
Q 000853 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDL 874 (1252)
Q Consensus 796 ~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~ 874 (1252)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+...+|++
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 4689999999999999999999999999999999999999999999998765 899999999975 455678999
Q ss_pred eeeecCcEEEEecCCC
Q 000853 875 ILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 875 ~~l~~~G~~~~~g~~~ 890 (1252)
++|. +|++++.|+++
T Consensus 223 ~~l~-~g~i~~~~~~~ 237 (258)
T PRK11701 223 LVMK-QGRVVESGLTD 237 (258)
T ss_pred EEEE-CCEEEEeCCHH
Confidence 9997 58999999863
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=376.98 Aligned_cols=211 Identities=26% Similarity=0.404 Sum_probs=176.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.+. +++++|+|+|++|+|||++||+||||||||||+++|+|.+ + .+|+|.+||.++
T Consensus 349 ~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i 413 (588)
T PRK11174 349 TIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIEL 413 (588)
T ss_pred eEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEec
Confidence 589999986542 1246899999999999999999999999999999999987 4 389999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. ..+++.++||+|++.++. -|++||+.++. ++.++ ++++++++..++.+ ..|+.+|..+
T Consensus 414 ~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 414 RELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred ccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 43 467889999999998765 59999998752 22333 34566666666543 4577787664
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
.+||||||||++|||||+++|+||+||||||+||+++++.+.+.|+++. +++|+|++||++ +....+|++++|. +
T Consensus 484 -~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl--~~i~~aD~Iivl~-~ 558 (588)
T PRK11174 484 -AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQL--EDLAQWDQIWVMQ-D 558 (588)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecCh--HHHHhCCEEEEEe-C
Confidence 6799999999999999999999999999999999999999999999986 489999999997 4567899999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|+.++
T Consensus 559 G~i~e~G~~~e 569 (588)
T PRK11174 559 GQIVQQGDYAE 569 (588)
T ss_pred CeEeecCCHHH
Confidence 89999998644
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=331.83 Aligned_cols=217 Identities=21% Similarity=0.301 Sum_probs=175.6
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC--C-CeEEEEEEEC
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIEGDIRIG 726 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~~~ 726 (1252)
..++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... + .+.+|+|.+|
T Consensus 38 ~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~ 104 (286)
T PRK14275 38 PHVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFD 104 (286)
T ss_pred eEEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEEC
Confidence 3588999988663 2358999999999999999999999999999999999743 2 1268999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccc
Q 000853 727 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG----IKYSLVG 797 (1252)
Q Consensus 727 g~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g 797 (1252)
|.++.. ..+++.++|++|++.+++. |+.||+.+....+.. ......++++.++++.+++.+ ..+.
T Consensus 105 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~--- 178 (286)
T PRK14275 105 GEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDK--- 178 (286)
T ss_pred CEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhC---
Confidence 987532 1346679999999987764 999999987543321 122333456778888888742 2222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeee
Q 000853 798 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILM 877 (1252)
Q Consensus 798 ~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 877 (1252)
.+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|
T Consensus 179 --~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L 254 (286)
T PRK14275 179 --NALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFF 254 (286)
T ss_pred --ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 2568999999999999999999999999999999999999999999999875 689999999975 466789999999
Q ss_pred ecCcEEEEecCCC
Q 000853 878 KNGGRIIYSGPLG 890 (1252)
Q Consensus 878 ~~~G~~~~~g~~~ 890 (1252)
. +|++++.|++.
T Consensus 255 ~-~G~i~~~g~~~ 266 (286)
T PRK14275 255 Y-EGVLVEHAPTA 266 (286)
T ss_pred E-CCEEEEeCCHH
Confidence 7 48999999863
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=328.41 Aligned_cols=220 Identities=20% Similarity=0.247 Sum_probs=177.9
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEEC
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIG 726 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~ 726 (1252)
+.+..+++++.+ +++.+|+|+||++++||+++|+|+||||||||+++|+|..++. +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFY-------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEe-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 446677776654 2356999999999999999999999999999999999987531 258999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000853 727 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801 (1252)
Q Consensus 727 g~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 801 (1252)
|.++.. ..+++.++|++|++.++ .+|+.||+.+....+. . .....+++.++++.+++.+..+...+ ..+
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCc
Confidence 987632 13456799999998776 6999999998765432 1 12334568889999998643222221 235
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee---
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK--- 878 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~--- 878 (1252)
++||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|.
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 78999999999999999999999999999999999999999999999964 799999999975 5677899999996
Q ss_pred ----cCcEEEEecCCC
Q 000853 879 ----NGGRIIYSGPLG 890 (1252)
Q Consensus 879 ----~~G~~~~~g~~~ 890 (1252)
++|++++.|+.+
T Consensus 226 ~~~~~~G~i~~~g~~~ 241 (261)
T PRK14263 226 SQGTRTGYLVEMGPTA 241 (261)
T ss_pred ccccCCceEEEeCCHH
Confidence 469999999863
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=322.97 Aligned_cols=194 Identities=24% Similarity=0.354 Sum_probs=160.6
Q ss_pred cccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCC
Q 000853 673 NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNI 752 (1252)
Q Consensus 673 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~ 752 (1252)
+++++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+
T Consensus 31 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~ 99 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPEL 99 (224)
T ss_pred hcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCC
Confidence 3445679999999999999999999999999999999999877 568999999986421 11123345679
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000853 753 TVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 832 (1252)
Q Consensus 753 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTs 832 (1252)
||+||+.+....+. ......++++.++++.+++.+..++. +.+||||||||++|||+|+.+|++++|||||+
T Consensus 100 tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEP~~ 171 (224)
T cd03220 100 TGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLP-----VKTYSSGMKARLAFAIATALEPDILLIDEVLA 171 (224)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99999988754331 22334455678899999998776665 46899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 833 GLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 833 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|||+.++..+.+.|++++++|+|||++||+++ ++...+|+++++. +|++++.|
T Consensus 172 gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 224 (224)
T cd03220 172 VGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLE-KGKIRFDG 224 (224)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 99999999999999999877899999999965 4667789999997 58888765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=327.89 Aligned_cols=219 Identities=24% Similarity=0.275 Sum_probs=175.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 367888877652 246899999999999999999999999999999999986632 3589999999
Q ss_pred eeCCc----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000853 728 YPKVQ----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSG 803 (1252)
Q Consensus 728 ~~~~~----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 803 (1252)
.++.. ...++.++|++|++.+++ .|+.||+.+...... ....+..++++.+.++.+++.+...... ...+.+
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHh-hcCccc
Confidence 87531 234667999999988876 899999988643321 1122333456778888888754221111 112468
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 804 lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|. +|++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~-~G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFL-MGEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999976 699999999975 5677899999997 4899
Q ss_pred EEecCC
Q 000853 884 IYSGPL 889 (1252)
Q Consensus 884 ~~~g~~ 889 (1252)
++.|++
T Consensus 223 ~~~g~~ 228 (249)
T PRK14253 223 VEHDDT 228 (249)
T ss_pred EEeCCH
Confidence 999985
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=343.69 Aligned_cols=225 Identities=23% Similarity=0.323 Sum_probs=188.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC--eEEEEEEECCe
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG--IIEGDIRIGGY 728 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 728 (1252)
-++++|++..+.... +...+++||||++.+||++||+|.|||||||+.++|.|..+.+ ..+|+|.++|.
T Consensus 5 lL~V~nL~v~~~~~~---------~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATDG---------GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecCC---------cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 478888877665431 2246999999999999999999999999999999999987643 35899999998
Q ss_pred eCCc---c----cccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000853 729 PKVQ---H----TFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP 799 (1252)
Q Consensus 729 ~~~~---~----~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 799 (1252)
++.. . ...+.++|++|++ .+.|.+|+.+.+.-...++.. ...++..+++.++|+.+||.+.... ..
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~ 150 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DR 150 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---cc
Confidence 6432 1 1346799999997 456779999988876666543 2367778889999999999887654 33
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeee
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
.+++|||||||||.||+||+.+|++||+||||++||+.++.+|++.|+++.+ .|.++|++|||+. -+.+.+|++++|.
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEE
Confidence 5789999999999999999999999999999999999999999999999985 4999999999976 3678899999997
Q ss_pred cCcEEEEecCCCC
Q 000853 879 NGGRIIYSGPLGQ 891 (1252)
Q Consensus 879 ~~G~~~~~g~~~~ 891 (1252)
+|++++.|++++
T Consensus 230 -~G~iVE~G~~~~ 241 (539)
T COG1123 230 -KGEIVETGPTEE 241 (539)
T ss_pred -CCEEEEecCHHH
Confidence 599999999754
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=328.43 Aligned_cols=214 Identities=21% Similarity=0.289 Sum_probs=174.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC--eEEEEEEECCe
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG--IIEGDIRIGGY 728 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 728 (1252)
.++++|+++.+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQA--------------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEe--------------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 57888988765 135899999999999999999999999999999999987631 16899999998
Q ss_pred eCCcccc-cceEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc---ccccccCCCCC
Q 000853 729 PKVQHTF-ARISGYCEQNDI--HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI---KYSLVGLPGVS 802 (1252)
Q Consensus 729 ~~~~~~~-~~~~~~v~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~g~~~~~ 802 (1252)
++..... ++.++|++|++. +.+..|+.+++.+.+..... .. .++++.++++.+++.+. .++. +.
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGK---PA--DDATLTAALEAVGLENAARVLKLY-----PF 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcCC---Ch--HHHHHHHHHHHcCCCChhhhhhcC-----Cc
Confidence 8653332 357999999974 44568999998765432211 11 23568899999999762 2332 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~-~G 217 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMS-HG 217 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEE-CC
Confidence 89999999999999999999999999999999999999999999998764 899999999975 4567789999997 58
Q ss_pred EEEEecCCC
Q 000853 882 RIIYSGPLG 890 (1252)
Q Consensus 882 ~~~~~g~~~ 890 (1252)
++++.|+++
T Consensus 218 ~i~~~~~~~ 226 (254)
T PRK10418 218 RIVEQGDVE 226 (254)
T ss_pred EEEEecCHH
Confidence 999999863
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=364.10 Aligned_cols=220 Identities=25% Similarity=0.301 Sum_probs=183.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 478889887652 2468999999999999999999999999999999999876 4589999999876
Q ss_pred Cccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHc----cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 731 VQHT----FARISGYCEQNDIHSPNITVEESVIFSAWL----RLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 731 ~~~~----~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.... .++.++|++|++.+++.+||+||+.++... +.......++.++++.++++.+|+.+..++. ++
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEK-----VA 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccc-----hh
Confidence 4321 235689999999888999999999875321 1100012234456788999999998776665 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|++++|. +|+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~-~G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMK-DGS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCE
Confidence 89999999999999999999999999999999999999999999999877999999999975 4667889999997 589
Q ss_pred EEEecCCCCc
Q 000853 883 IIYSGPLGQH 892 (1252)
Q Consensus 883 ~~~~g~~~~~ 892 (1252)
+++.|++++.
T Consensus 223 i~~~g~~~~~ 232 (510)
T PRK09700 223 SVCSGMVSDV 232 (510)
T ss_pred EeeecchhhC
Confidence 9999998654
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=319.42 Aligned_cols=201 Identities=22% Similarity=0.302 Sum_probs=171.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+++++||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 478899887552 2458999999999999999999999999999999999877 4589999999876
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
.....++.++|++|++.+++.+|+.||+.+....+. . ..++.++++++.++|.+..++. +..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCC-----hhhCCHHHHH
Confidence 543345568999999988888999999988754432 1 1234567889999998766655 4689999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
|++|||+++.+|++++|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++.+.+|+++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999999888999999999976 5778889988875
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=328.84 Aligned_cols=222 Identities=21% Similarity=0.276 Sum_probs=178.7
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 478999988763 235899999999999999999999999999999999987642 1379999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++ .|+.||+.+....... ....+..+++.++++.+++.+..+... ...+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKI-HKSAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHh-cCCcc
Confidence 87531 234667999999988777 8999999886533211 122334456788999998854221111 12356
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecC-
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNG- 880 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~- 880 (1252)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|++++|.++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999875 4899999999975 577889999999742
Q ss_pred ---cEEEEecCCC
Q 000853 881 ---GRIIYSGPLG 890 (1252)
Q Consensus 881 ---G~~~~~g~~~ 890 (1252)
|++++.|+++
T Consensus 229 ~~~G~i~~~~~~~ 241 (261)
T PRK14258 229 NRIGQLVEFGLTK 241 (261)
T ss_pred CcCceEEEeCCHH
Confidence 8999999874
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=320.17 Aligned_cols=211 Identities=25% Similarity=0.416 Sum_probs=175.2
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.+... .+.+.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5678888765311 012569999999999999999999999999999999999876 56899999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 QH------TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~~------~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
.. ..++.++|++|++.+++.+|+.||+.+...... ....++..+++.++++.+++.+..+.. +++||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCC
Confidence 21 245679999999988888999999998754321 123344556789999999998766654 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .++|||++||+++ ..+.+|++++|.+ |++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999876 4899999999964 4578999999974 664
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=318.24 Aligned_cols=198 Identities=24% Similarity=0.290 Sum_probs=164.2
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 46677777652 2458999999999999999999999999999999999877 45899999998754
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 732 Q--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 732 ~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
. ..+++.++|++|++.+++.+|+.||+.+....+.. ..+++++++++.+|+.+..++. ++.||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGP------GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCc------cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHH
Confidence 2 23456789999999888889999999887544311 1235678899999998766654 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeee
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILM 877 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 877 (1252)
||++||+||+++|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+ ..|+...++
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i-~~~~~~~~~ 201 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PV-ASDKVRKLR 201 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hh-ccCCceEEe
Confidence 9999999999999999999999999999999999999999877899999999975 34 445544433
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=375.96 Aligned_cols=137 Identities=22% Similarity=0.304 Sum_probs=108.8
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCc
Q 000853 748 HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-KYSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS 823 (1252)
Q Consensus 748 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~lSgGqrqrv~ia~al~---~~p~ 823 (1252)
.+...||.|+|.++..-..+.....++..+++ +.++.+||.+. .+.. +.+||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 34568999999887542211111233444556 57889999765 4443 4689999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee-----cCcEEEEecCCCCc
Q 000853 824 IIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK-----NGGRIIYSGPLGQH 892 (1252)
Q Consensus 824 illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~~~~g~~~~~ 892 (1252)
+++|||||+|||+.+...+++.|+++.++|.|||+++|+++ ....+|++++|. ++|++++.|++++.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~--~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH--VVKVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 99999999999999999999999999888999999999875 348899999995 36899999998653
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=328.80 Aligned_cols=220 Identities=22% Similarity=0.289 Sum_probs=175.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC--C-CeEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 488999988663 2468999999999999999999999999999999999642 1 14689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++. |++||+.+...... .......++.+.+.++.+++.+...... ...+.
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 163 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRL-HSSAL 163 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHH-hcCcc
Confidence 87642 1345679999999887774 99999987643221 1122233455778888888752111111 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|. +|+
T Consensus 164 ~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~-~G~ 240 (268)
T PRK14248 164 SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL-NGD 240 (268)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999965 689999999975 4667899999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 241 i~~~~~~~ 248 (268)
T PRK14248 241 LVEYDQTE 248 (268)
T ss_pred EEEeCCHH
Confidence 99999863
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=327.04 Aligned_cols=220 Identities=23% Similarity=0.286 Sum_probs=175.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 377888887653 245899999999999999999999999999999999987642 1369999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++. |++||+.+....+... ..+..++.++++++.+++.+...... ...+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTT--AQSRLDEVVEKSLRQAALWDEVKDNL-HKSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCC--hhhHHHHHHHHHHHHhCCchhhhhHh-hCCcc
Confidence 87532 2346789999999988774 9999999875433211 12223455777888888753211111 12357
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|++++|. +|+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~-~G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLL-TGD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEe-CCe
Confidence 899999999999999999999999999999999999999999999985 5899999999975 5667789999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 224 i~~~~~~~ 231 (251)
T PRK14249 224 LVEYGRTG 231 (251)
T ss_pred EEEeCCHH
Confidence 99999864
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=327.92 Aligned_cols=220 Identities=26% Similarity=0.285 Sum_probs=176.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478889887653 246899999999999999999999999999999999975421 2489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ...++.++|++|++.+++ .||+||+.+....+.. ......++.+.++++.+++.+...+.. ...+.
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRL-HDSAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCc-ccHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHh-hcChh
Confidence 88642 234567999999998877 4999999987654321 122333456788888888753211111 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|. +|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~-~G~ 225 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMY-LGK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999976 689999999975 4667899999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
++..|+++
T Consensus 226 i~~~g~~~ 233 (253)
T PRK14261 226 LIEFDKTT 233 (253)
T ss_pred EEEcCCHH
Confidence 99998863
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=330.56 Aligned_cols=222 Identities=18% Similarity=0.275 Sum_probs=178.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. +...+|+|+||+|++||+++|+||||||||||+++|+|..+ .+|+|.+||.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 3788999987742 12458999999999999999999999999999999999875 379999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccC------CCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL------PGV 801 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~------~~~ 801 (1252)
.. ...++.++|++|++.+++ .|++||+.... ... ++.+.+.++.+||.+..+...+. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 345678999999998876 59999996321 111 23467788889987655543321 134
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++. +++|||+++|+++ ....+|++++|. +|
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~--~i~~~dri~vl~-~G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE--AMLECQRFLVIE-EN 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH--HHHhCCEEEEec-CC
Confidence 5799999999999999999999999999999999999999999999875 4899999999974 345699999997 58
Q ss_pred EEEEecCCCCcchhHHHHHhh
Q 000853 882 RIIYSGPLGQHSCKVIDYFES 902 (1252)
Q Consensus 882 ~~~~~g~~~~~~~~~~~~f~~ 902 (1252)
++++.|++++... ...||..
T Consensus 213 ~i~~~g~~~~l~~-~~~~~~~ 232 (275)
T cd03289 213 KVRQYDSIQKLLN-EKSHFKQ 232 (275)
T ss_pred eEeecCCHHHHhh-CcHHHHH
Confidence 9999999865432 2245554
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=331.37 Aligned_cols=219 Identities=24% Similarity=0.380 Sum_probs=174.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~~------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWRN------------GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEecC------------CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 4788999887631 2458999999999999999999999999999999999877 4689999999876
Q ss_pred CcccccceEEEEccCCCCC--CCCCHHHHHHHHHHcc-CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 731 VQHTFARISGYCEQNDIHS--PNITVEESVIFSAWLR-LSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~--~~~tv~e~l~~~~~l~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
.....++.++|++|++.+. ...+++|++.+..... ..........++++.++++.++|.+..++. +..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ-----IGELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC-----cccCCHH
Confidence 4322234689999997642 2357899886532100 000111122345678889999998776655 4589999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++ +|++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~--~G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV--KGTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE--CCEEEeec
Confidence 999999999999999999999999999999999999999999877999999999975 566778887555 48999999
Q ss_pred CCCC
Q 000853 888 PLGQ 891 (1252)
Q Consensus 888 ~~~~ 891 (1252)
++++
T Consensus 224 ~~~~ 227 (272)
T PRK15056 224 PTET 227 (272)
T ss_pred CHHh
Confidence 8765
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=307.30 Aligned_cols=193 Identities=25% Similarity=0.370 Sum_probs=162.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+|||||||||||+.|.|+++|+ +|+|.++|.++.... .++.+|+++|+..+|..+||+||+.|..+-
T Consensus 36 i~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre 112 (263)
T COG1127 36 ILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE 112 (263)
T ss_pred EEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHh
Confidence 47999999999999999999999998 999999999876433 356799999999999999999999996543
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCccc-ccccccCCcccccCccccchh
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDIC-ADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~~t~vg~~~~rgLSGGqkqRv 153 (1252)
+.. ..++.. +..+..-|+..||+.. .+....+ ||||+|||+
T Consensus 113 ~~~-----lp~~~i----------------------------~~lv~~KL~~VGL~~~~~~~~PsE-----LSGGM~KRv 154 (263)
T COG1127 113 HTK-----LPESLI----------------------------RELVLMKLELVGLRGAAADLYPSE-----LSGGMRKRV 154 (263)
T ss_pred hcc-----CCHHHH----------------------------HHHHHHHHHhcCCChhhhhhCchh-----hcchHHHHH
Confidence 211 111110 1123445777899876 6777666 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+||||++.+|+|+++||||+||||.++..+.+.++++.+..+.|+++ ++|+.++++..||++++|.+|+|+++|+++++
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~-VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIM-VTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEE-EECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999998877766665 56778899999999999999999999999987
Q ss_pred HH
Q 000853 234 CK 235 (1252)
Q Consensus 234 ~~ 235 (1252)
.+
T Consensus 234 ~~ 235 (263)
T COG1127 234 LA 235 (263)
T ss_pred Hh
Confidence 54
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=329.78 Aligned_cols=221 Identities=20% Similarity=0.243 Sum_probs=175.7
Q ss_pred CcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEE
Q 000853 649 PLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRI 725 (1252)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~ 725 (1252)
+..++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|...+. +.+|+|.+
T Consensus 18 ~~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (274)
T PRK14265 18 HSVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLY 84 (274)
T ss_pred CceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEE
Confidence 34688999988663 245899999999999999999999999999999999976421 25899999
Q ss_pred CCeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000853 726 GGYPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG 800 (1252)
Q Consensus 726 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 800 (1252)
+|.++.. ..+++.++|++|++.+++ .|+.||+.+....+. .. ...++.+.+.++.+++........ ...
T Consensus 85 ~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~ 158 (274)
T PRK14265 85 RDRNIYDSQINSVKLRRQVGMVFQRPNPFP-KSIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKL-KEK 158 (274)
T ss_pred CCEecccccchhHHHhhcEEEEccCCcccc-ccHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHh-cCC
Confidence 9987532 234567999999988776 499999988644321 11 122344677788887742111111 122
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee--
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK-- 878 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-- 878 (1252)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.
T Consensus 159 ~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~ 236 (274)
T PRK14265 159 GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTE 236 (274)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecc
Confidence 568999999999999999999999999999999999999999999999975 799999999975 5778899999996
Q ss_pred ------cCcEEEEecCCC
Q 000853 879 ------NGGRIIYSGPLG 890 (1252)
Q Consensus 879 ------~~G~~~~~g~~~ 890 (1252)
++|++++.|+++
T Consensus 237 ~~~~~~~~G~~~~~g~~~ 254 (274)
T PRK14265 237 IDEYGKRRGKLVEFSPTE 254 (274)
T ss_pred cccccccCceEEEeCCHH
Confidence 269999999974
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=299.18 Aligned_cols=206 Identities=25% Similarity=0.405 Sum_probs=157.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCC--CCCceeEEEEECCccCCCc-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLS--HSLKVSGEVSYNGYRLDEF-----VPQKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~--~~~~~~G~V~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+||++|||||||||||+++....+ |..+++|+|.++|+++... ..|+.+|.|+|.+.-|| +|++||+.|+.+
T Consensus 35 VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r 113 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLR 113 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHH
Confidence 589999999999999999998765 4467899999999988553 23688999999999999 899999999998
Q ss_pred ccCCCCCCchhHHHH-HHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccch
Q 000853 74 CQGTGHRADSMKEVI-KLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKR 152 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqR 152 (1252)
+.+... +..++.. +..+.+. .+. ++ .|..= ....+||||||||
T Consensus 114 ~~g~~~--~~ldeiVe~sLk~Aa---------------LWd--------EV---------KDrL~--~sa~~LSGGQQQR 157 (253)
T COG1117 114 LHGIKD--KELDEIVESSLKKAA---------------LWD--------EV---------KDRLH--KSALGLSGGQQQR 157 (253)
T ss_pred hhccch--HHHHHHHHHHHHHhH---------------hHH--------Hh---------HHHhh--CCccCCChhHHHH
Confidence 775432 2222211 1111111 111 11 11110 1124599999999
Q ss_pred hHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcch
Q 000853 153 LTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSY 232 (1252)
Q Consensus 153 vsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~ 232 (1252)
|+|||||+-+|+|||||||||+|||.+...|.+.+.++.+ +-|+ +.++|...++.+..|+...+..|+++++|+.++
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTI-viVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTI-VIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEE-EEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 9999999999999999999999999999999999999964 3444 446788889999999999999999999999887
Q ss_pred HHHHHHhcCCCCCCCCChhHHH
Q 000853 233 ICKFFEDCGFRCPERKGVADFL 254 (1252)
Q Consensus 233 ~~~~f~~~G~~~p~~~~~ad~~ 254 (1252)
+ |..|.++...||+
T Consensus 235 i--------F~~P~~~~TedYi 248 (253)
T COG1117 235 I--------FTNPKHKRTEDYI 248 (253)
T ss_pred h--------hcCccHHHHHHHh
Confidence 6 3445554444543
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=325.60 Aligned_cols=220 Identities=23% Similarity=0.305 Sum_probs=175.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC--C-eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--G-IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~--~-~~~G~i~~~g 727 (1252)
.++++|+++.++ .+.+|+|+||+|++||+++|+|+||||||||+++|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 478899988663 24589999999999999999999999999999999998652 1 3589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++ .|++||+.+....+.. ...+..++.+.++++.+++........ ...+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 146 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGV--KDKELIDQRVEESLKQAAIWKETKDNL-DRNAQ 146 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCcchHHHh-ccChh
Confidence 87532 134567999999987775 7999999876543211 122233456788899998852110001 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|. +|+
T Consensus 147 ~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~-~G~ 223 (251)
T PRK14251 147 AFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM-NGD 223 (251)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999864 799999999975 4667789999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
++..|+.+
T Consensus 224 i~~~~~~~ 231 (251)
T PRK14251 224 LIEAGPTE 231 (251)
T ss_pred EEEeCCHH
Confidence 99998863
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=328.32 Aligned_cols=225 Identities=24% Similarity=0.359 Sum_probs=179.3
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++... .+ + ...++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~nl~~~~~~~~-~~--~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG-LS--G-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc-cc--c-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 67888887764210 00 0 0013569999999999999999999999999999999999876 46899999998754
Q ss_pred cc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000853 732 QH------TFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVS 802 (1252)
Q Consensus 732 ~~------~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 802 (1252)
.. ..++.++|++|++ .+.+..|+.|++.+..... ......+..++++++++.+++. +..+.. +.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 21 2456799999997 3567799999987653211 1122334455788999999996 344443 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++++|. +|
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~-~G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMD-NG 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEE-CC
Confidence 89999999999999999999999999999999999999999999999765 899999999975 4666899999997 58
Q ss_pred EEEEecCCCC
Q 000853 882 RIIYSGPLGQ 891 (1252)
Q Consensus 882 ~~~~~g~~~~ 891 (1252)
++++.|++++
T Consensus 229 ~i~~~g~~~~ 238 (268)
T PRK10419 229 QIVETQPVGD 238 (268)
T ss_pred EEeeeCChhh
Confidence 9999998765
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=314.20 Aligned_cols=179 Identities=25% Similarity=0.339 Sum_probs=151.6
Q ss_pred ccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-----ccccceEEEEccCCC-CC
Q 000853 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-----HTFARISGYCEQNDI-HS 749 (1252)
Q Consensus 676 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~-~~ 749 (1252)
++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++. ..
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3569999999999999999999999999999999999877 458999999987631 134567899999973 33
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000853 750 PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 829 (1252)
Q Consensus 750 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDE 829 (1252)
...|++||+.+....+ ....++..++++++++.+++.+..++. +.+||||||||++|||||+.+|++++|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4579999999865432 123344456688999999998766655 46899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 000853 830 PTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPS 864 (1252)
Q Consensus 830 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 864 (1252)
||+|||+.++..+.+.|++++++|+|||++||+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999864
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=316.15 Aligned_cols=184 Identities=28% Similarity=0.328 Sum_probs=157.8
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCH
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
+.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+|+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccccHHhhhheEEeccccccCCCcCH
Confidence 468999999999999999999999999999999999877 458999999987532 2356679999999988889999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000853 755 EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgL 834 (1252)
+||+.+.... . .+++++++++.+++.+..++. +.+||||||||++|||+|+.+|++++|||||+||
T Consensus 91 ~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 91 LENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred HHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 9999875311 1 234578899999998766554 4689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeee
Q 000853 835 DARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILM 877 (1252)
Q Consensus 835 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 877 (1252)
|+.++..+.+.|+++.++|+|+|++||++. +....+++++.+
T Consensus 157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999998877999999999975 566677777655
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=321.67 Aligned_cols=210 Identities=21% Similarity=0.340 Sum_probs=171.7
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 478889887652 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCH
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~lSg 806 (1252)
.. ..+++.++|++|++.+++ .|++||+.+....+.. . ..+++++++++.+++.+ ..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 42 234567899999988776 5999999886443321 1 12345778999999953 44443 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++ +.+|++++|.+++..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHh
Confidence 9999999999999999999999999999999999999999998764 899999999975 34 57999999965555566
Q ss_pred ecC
Q 000853 886 SGP 888 (1252)
Q Consensus 886 ~g~ 888 (1252)
+|.
T Consensus 219 ~~~ 221 (225)
T PRK10247 219 EAR 221 (225)
T ss_pred hhh
Confidence 554
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=363.82 Aligned_cols=211 Identities=24% Similarity=0.376 Sum_probs=176.9
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.|+. ++.+|+|+|++|++||.+||+||||||||||+++|+|.+. |.+|+|++||.++
T Consensus 473 ~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~i 538 (708)
T TIGR01193 473 DIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFSL 538 (708)
T ss_pred cEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEEH
Confidence 5899999998742 2468999999999999999999999999999999999987 5689999999985
Q ss_pred C---cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 V---QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~---~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
. ...+|+.+|||+|++.++. -|++||+.++.. ++.+ ++++.++++..++.+ ..|+.+|..
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~----~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~- 608 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK----ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEE- 608 (708)
T ss_pred HHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC----CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCC-
Confidence 4 3467889999999998765 599999987521 1222 234566666666543 346677764
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++||||++++|++|+||||||+||+.+++.+++.|+++ +++|+|++||+++ ..+.+|++++|. +
T Consensus 609 G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~-~ 683 (708)
T TIGR01193 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLD-H 683 (708)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEE-C
Confidence 4689999999999999999999999999999999999999999999985 4899999999974 568899999997 5
Q ss_pred cEEEEecCCC
Q 000853 881 GRIIYSGPLG 890 (1252)
Q Consensus 881 G~~~~~g~~~ 890 (1252)
|++++.|+.+
T Consensus 684 G~i~~~G~~~ 693 (708)
T TIGR01193 684 GKIIEQGSHD 693 (708)
T ss_pred CEEEEECCHH
Confidence 9999999964
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=328.69 Aligned_cols=220 Identities=21% Similarity=0.239 Sum_probs=174.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC--C-CeEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 588999988663 2358999999999999999999999999999999999764 1 13689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++ .|++||+.+....+.. ...+..++.+.++++.+++.+...... ...+.
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~ 166 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGI--KDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAY 166 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcc
Confidence 87632 234667999999988776 5999999987543211 112223445677777775432111111 12356
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|. +|+
T Consensus 167 ~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~-~G~ 243 (271)
T PRK14238 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL-NGY 243 (271)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999976 799999999975 4667899999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|++.
T Consensus 244 i~~~g~~~ 251 (271)
T PRK14238 244 VNEYDDTD 251 (271)
T ss_pred EEEeCCHH
Confidence 99999863
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=324.60 Aligned_cols=219 Identities=24% Similarity=0.311 Sum_probs=174.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC--CC-eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--GG-IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478899987653 2458999999999999999999999999999999999753 21 2489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++ .|+.||+.+....+.. ...+..++.+.+.++.+++........ ...+.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~ 147 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHL-HESAL 147 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHH-hcCcc
Confidence 87632 234567999999988777 6999999986543321 112223345677888887642211111 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|. +|+
T Consensus 148 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~-~G~ 224 (252)
T PRK14255 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL-TGN 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999976 589999999975 4667899999997 589
Q ss_pred EEEecCC
Q 000853 883 IIYSGPL 889 (1252)
Q Consensus 883 ~~~~g~~ 889 (1252)
++..|++
T Consensus 225 i~~~~~~ 231 (252)
T PRK14255 225 LIEFADT 231 (252)
T ss_pred EEEeCCH
Confidence 9999886
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=359.81 Aligned_cols=213 Identities=23% Similarity=0.344 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 488899988763 2458999999999999999999999999999999999877 4589999999876
Q ss_pred Ccc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQH---T-FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~~---~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
... . .++.+||++|++.+++.+||+||+.+... . .+..++++.++++.++|.+..+.. +.+|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~-----~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP--K-----RQASMQKMKQLLAALGCQLDLDSS-----AGSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc--c-----chHHHHHHHHHHHHcCCCccccCC-----hhhCCH
Confidence 432 1 23468999999988999999999987531 1 123346688999999998776655 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|. +|++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~-~G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMR-DGTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999975 4667899999997 4899999
Q ss_pred cCCCCc
Q 000853 887 GPLGQH 892 (1252)
Q Consensus 887 g~~~~~ 892 (1252)
|++++.
T Consensus 222 g~~~~~ 227 (510)
T PRK15439 222 GKTADL 227 (510)
T ss_pred cChHHc
Confidence 987654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=358.72 Aligned_cols=221 Identities=21% Similarity=0.338 Sum_probs=181.4
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||++++||++||+||||||||||+++|+|..++++.+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 56778877652 24699999999999999999999999999999999998764235899999998764
Q ss_pred ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCC
Q 000853 732 QHT----FARISGYCEQNDIHSPNITVEESVIFSAWLRLSP-EIDLKTKAEFVNEVLQTIELDGIK-YSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~~~----~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~g~~~~~~lS 805 (1252)
... .++.+||++|++.+++.+||.||+.+....+... ....++..++++++++.+++.+.. +.. +++||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 321 2456899999998889999999998864332111 112334456788999999997653 232 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|.+ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999877999999999975 56678999999974 89999
Q ss_pred ecCCCCc
Q 000853 886 SGPLGQH 892 (1252)
Q Consensus 886 ~g~~~~~ 892 (1252)
.|++++.
T Consensus 222 ~~~~~~~ 228 (500)
T TIGR02633 222 TKDMSTM 228 (500)
T ss_pred ecCcccC
Confidence 9987654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=303.70 Aligned_cols=200 Identities=25% Similarity=0.380 Sum_probs=168.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+|||||||||||++|.|..+|+ +|+|.+||.++.... .++.+|+++|+..+.+.+||.||+..+..-
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~ 108 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG 108 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcc
Confidence 58999999999999999999999987 999999998876543 256799999999999999999999987532
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
+. .......+.++..| +..+-..|+.+|+.+.+.++.++ |||||+|||+
T Consensus 109 ~~-----------s~~~slfglfsk~d---------------k~~Al~aLervgi~~~A~qra~~-----LSGGQQQRVa 157 (258)
T COG3638 109 YT-----------STWRSLFGLFSKED---------------KAQALDALERVGILDKAYQRAST-----LSGGQQQRVA 157 (258)
T ss_pred cc-----------hHHHHHhCCCCHHH---------------HHHHHHHHHHcCcHHHHHHHhcc-----CCcchhHHHH
Confidence 21 11122233333222 22345678899999999998887 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|||||+++|+|+|-|||+++|||.+++++++.|++++...|.|+++.+|+ .+-+.++||||+-|++|+++|.||++++.
T Consensus 158 IARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~-vdlA~~Y~~Riigl~~G~ivfDg~~~el~ 236 (258)
T COG3638 158 IARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-VDLAKKYADRIIGLKAGRIVFDGPASELT 236 (258)
T ss_pred HHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHHhhheEecCCcEEEeCChhhhh
Confidence 99999999999999999999999999999999999999888999888776 55778899999999999999999998864
Q ss_pred H
Q 000853 235 K 235 (1252)
Q Consensus 235 ~ 235 (1252)
+
T Consensus 237 ~ 237 (258)
T COG3638 237 D 237 (258)
T ss_pred H
Confidence 3
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=371.20 Aligned_cols=214 Identities=24% Similarity=0.356 Sum_probs=179.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|++|.++. +++.+|+|+|++|++||++||+|+||||||||+++|+|..+ |.+|+|.+||.+.
T Consensus 341 ~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 407 (582)
T PRK11176 341 DIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHDL 407 (582)
T ss_pred eEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEEh
Confidence 5899999998742 13569999999999999999999999999999999999987 4589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-------GIKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~~~ 800 (1252)
.. ..+++.++|+||++.+++ -|++||+.++. +...+ +++++++++..++. +..|+.+|..+
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g 478 (582)
T PRK11176 408 RDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGENG 478 (582)
T ss_pred hhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCCC
Confidence 43 457788999999998765 69999997641 11122 33466677776644 34577777654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
.+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++.+ ++|+|++||++ +....||++++|. +
T Consensus 479 -~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~--~~~~~~D~Ii~l~-~ 553 (582)
T PRK11176 479 -VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRL--STIEKADEILVVE-D 553 (582)
T ss_pred -CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEE-C
Confidence 68999999999999999999999999999999999999999999999854 79999999987 4578899999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|+.++
T Consensus 554 g~i~e~g~~~~ 564 (582)
T PRK11176 554 GEIVERGTHAE 564 (582)
T ss_pred CEEEEeCCHHH
Confidence 89999999643
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=314.59 Aligned_cols=193 Identities=25% Similarity=0.360 Sum_probs=160.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEecccc--ccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYD--LHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~--~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+|+|+|+++|. +|+|.++|.+.+....+..+|||||.. .+-...||+|.+..+..-+..-
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 58999999999999999999999987 999999999887776677899999954 3334479999998864221100
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
.... ..+++.+++++|+..|+.+.+|..||+ |||||+|||-||||
T Consensus 109 --~~~~----------------------------~~~d~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lARA 153 (254)
T COG1121 109 --FRRL----------------------------NKKDKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARA 153 (254)
T ss_pred --cccc----------------------------cHHHHHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHHH
Confidence 0000 001123578899999999999999999 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|+++|++|+|||||+|+|+.++..+.+.|+++.++ |+|+++ ++|....+.++||+|+.|+ +++.+.|++++..
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~-vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLM-VTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEE-EeCCcHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 99999999999999999999999999999999876 666655 6788889999999999996 5678899887763
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=323.06 Aligned_cols=231 Identities=20% Similarity=0.264 Sum_probs=181.7
Q ss_pred cEEEEEeEEEEEecCc----cccc--ccc-cccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEE
Q 000853 650 LTLTFEDVQYYVDTPS----AMKK--RGF-NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGD 722 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~----~~~~--~~~-~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~ 722 (1252)
+.++.+|++..++... ..+. .++ ..+.+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceE
Confidence 5688888876665421 1111 111 2245679999999999999999999999999999999999877 45899
Q ss_pred EEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 723 IRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 723 i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
|.++|. +++++|+..+.+.+|+.||+.+...... ...++..+.++++++.+++.+..+.. ++
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCMG---FKRKEIKAMTPKIIEFSELGEFIYQP-----VK 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----cc
Confidence 999985 2566777766778999999987644322 23344455677888888887766554 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++||+++ ++.+.+|++++|. +|+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~-~G~ 220 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIE-GGK 220 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEE-CCE
Confidence 89999999999999999999999999999999999999999999999877999999999864 4667789999887 589
Q ss_pred EEEecCCCCcchhHHHHHhh
Q 000853 883 IIYSGPLGQHSCKVIDYFES 902 (1252)
Q Consensus 883 ~~~~g~~~~~~~~~~~~f~~ 902 (1252)
+++.|+.++..+...+||..
T Consensus 221 i~~~g~~~~~~~~~~~~~~~ 240 (264)
T PRK13546 221 LKDYGELDDVLPKYEAFLND 240 (264)
T ss_pred EEEeCCHHHHHHHhHHHHHH
Confidence 99999875543444444443
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=328.73 Aligned_cols=210 Identities=27% Similarity=0.439 Sum_probs=162.8
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++. +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (237)
T cd03252 2 TFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLAL 68 (237)
T ss_pred EEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHh
Confidence 46777765521 12458999999999999999999999999999999999887 458999999987532
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHc--CCcccccccccCCCCC
Q 000853 733 ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAE-----FVNEVLQTI--ELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 733 ---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~g~~~~~ 802 (1252)
..+++.++|++|++.++ ..||.||+.+... ........+ ...+.++.+ ++....+. .+.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~ 137 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLF-NRSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QGA 137 (237)
T ss_pred cCHHHHhhcEEEEcCCchhc-cchHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CCC
Confidence 23466799999998765 4799999976421 111111111 122333333 23322222 357
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++ ..+|++++|. +|+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~-~G~ 213 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVME-KGR 213 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999964 899999999975 34 5699999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 214 i~~~~~~~ 221 (237)
T cd03252 214 IVEQGSHD 221 (237)
T ss_pred EEEEcCHH
Confidence 99999863
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=371.19 Aligned_cols=214 Identities=30% Similarity=0.456 Sum_probs=179.2
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++|+|+++.++. ++++|+|+||+++|||++||+||||||||||+++|.|.++ +.+|+|.+||++
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCEe
Confidence 35999999998752 3579999999999999999999999999999999999887 458999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-------CcccccccccCC
Q 000853 730 KVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE-------LDGIKYSLVGLP 799 (1252)
Q Consensus 730 ~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~g~~ 799 (1252)
+.. ..+|+.++||+|++.++. -|++||+.++. ++.++++ ++++++..+ +.+..|+.+|..
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-----~~at~ee----i~~a~k~a~~~d~I~~lp~g~dt~vge~ 462 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-----PDATDEE----IEEALKLANAHEFIANLPDGYDTIVGER 462 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhChHHHHHhCcccccceecCC
Confidence 653 567889999999998876 89999999863 2233333 344444333 344578888844
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
..+||||||||++||||++++|+||+||||||+||+.++..+++.++++. +++|+|+++|+++ ....+|++++|++
T Consensus 463 -G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~~ 538 (567)
T COG1132 463 -GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLDN 538 (567)
T ss_pred -CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEEC
Confidence 46899999999999999999999999999999999999999999999887 5789999999975 4566999999985
Q ss_pred CcEEEEecCCCCc
Q 000853 880 GGRIIYSGPLGQH 892 (1252)
Q Consensus 880 ~G~~~~~g~~~~~ 892 (1252)
|++++.|+.++.
T Consensus 539 -G~i~e~G~h~eL 550 (567)
T COG1132 539 -GRIVERGTHEEL 550 (567)
T ss_pred -CEEEEecCHHHH
Confidence 899999997543
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=327.42 Aligned_cols=219 Identities=20% Similarity=0.240 Sum_probs=174.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 478899987663 235899999999999999999999999999999999975421 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++ .|+.||+.+....+. .. ...++++.++++.+++.+..+... ...+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKL-KQSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHh-cCCcc
Confidence 87531 234667999999988776 599999988654321 11 123345677788887743211111 12356
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec---
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN--- 879 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~--- 879 (1252)
+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.+
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 8999999999999999999999999999999999999999999999976 589999999975 57788999999972
Q ss_pred -----CcEEEEecCCC
Q 000853 880 -----GGRIIYSGPLG 890 (1252)
Q Consensus 880 -----~G~~~~~g~~~ 890 (1252)
.|++++.|+++
T Consensus 229 ~~~~~~g~i~~~~~~~ 244 (264)
T PRK14243 229 EGGGRYGYLVEFDRTE 244 (264)
T ss_pred cccccCceEEEeCCHH
Confidence 58999999863
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=322.36 Aligned_cols=220 Identities=24% Similarity=0.339 Sum_probs=174.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||++||+|+||||||||+++|+|.....+.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 478899887653 2358999999999999999999999999999999999731125689999999875
Q ss_pred Ccc---cccc-eEEEEccCCCCCCCCCHHHHHHHHHHccCC----CCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000853 731 VQH---TFAR-ISGYCEQNDIHSPNITVEESVIFSAWLRLS----PEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGV 801 (1252)
Q Consensus 731 ~~~---~~~~-~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~----~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~ 801 (1252)
... ..++ .++|++|++.+++.+|+++++.+....... .+....+..+++.++++.+++.+ ..++. +
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 148 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRN-----V 148 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccc-----c
Confidence 431 2222 478999999888999999999875432110 11122233456788999999863 44443 3
Q ss_pred C-CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHH-hcceeeeec
Q 000853 802 S-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEA-FDDLILMKN 879 (1252)
Q Consensus 802 ~-~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~ 879 (1252)
. +|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|.
T Consensus 149 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~- 226 (252)
T CHL00131 149 NEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQ- 226 (252)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEe-
Confidence 3 59999999999999999999999999999999999999999999999877999999999865 34344 78888886
Q ss_pred CcEEEEecCCC
Q 000853 880 GGRIIYSGPLG 890 (1252)
Q Consensus 880 ~G~~~~~g~~~ 890 (1252)
+|++++.|+++
T Consensus 227 ~G~i~~~~~~~ 237 (252)
T CHL00131 227 NGKIIKTGDAE 237 (252)
T ss_pred CCEEEEecChh
Confidence 58999999874
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=297.70 Aligned_cols=209 Identities=23% Similarity=0.388 Sum_probs=180.2
Q ss_pred ccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCC
Q 000853 674 QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSP 750 (1252)
Q Consensus 674 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~ 750 (1252)
++++.+|+++|+.|++|.+++|+|||||||||||.+++++.+ ..+|+|+++|.++.. +...+.++..-|+.....
T Consensus 11 y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~ 88 (252)
T COG4604 11 YGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINS 88 (252)
T ss_pred hCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhh
Confidence 356789999999999999999999999999999999999877 469999999998653 346667788889888888
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000853 751 NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 830 (1252)
Q Consensus 751 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEP 830 (1252)
.+||+|-+.|+.--. ......++.+..++++++.++|.+.+|+.+ .+||||||||.-||+.++.+.+.++||||
T Consensus 89 rlTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEP 162 (252)
T COG4604 89 RLTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEP 162 (252)
T ss_pred eeEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCc
Confidence 999999999973221 122233456678999999999999998874 58999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCc
Q 000853 831 TSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 831 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
.++||...+.++|+.|++++++ |+||+++.||.+. .....|.++.|. +|+++..|++++.
T Consensus 163 LNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK-~G~vv~~G~~~ei 223 (252)
T COG4604 163 LNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALK-NGKVVKQGSPDEI 223 (252)
T ss_pred ccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeec-CCEEEecCCHHHh
Confidence 9999999999999999999976 9999999999875 345679999997 5999999999763
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=357.68 Aligned_cols=124 Identities=27% Similarity=0.357 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCcEEE
Q 000853 751 NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-KYSLVGLPGVSGLSTEQRKRLTIAVELVA---NPSIIF 826 (1252)
Q Consensus 751 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~lSgGqrqrv~ia~al~~---~p~ill 826 (1252)
.+||.|.+.|...+.. .....++++.+||... .+.. ...||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~~---------i~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPS---------ISRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhccc---------hhHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 4678888877654321 1124578888998653 3332 46899999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee-----cCcEEEEecCCC
Q 000853 827 MDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK-----NGGRIIYSGPLG 890 (1252)
Q Consensus 827 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~~~~g~~~ 890 (1252)
|||||+|||+.+...+++.|+++.++|.|||+++|+++ ....+|+++.|. ++|++++.|+++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~ 921 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTPE 921 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCHH
Confidence 99999999999999999999999878999999999864 457799999994 579999999874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=368.83 Aligned_cols=211 Identities=25% Similarity=0.392 Sum_probs=179.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ++.+|+|+|+++++||++||+|+||||||||+|+|+|..+ |.+|+|.+||.++
T Consensus 340 ~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i 405 (592)
T PRK10790 340 RIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPL 405 (592)
T ss_pred eEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEh
Confidence 5899999998742 2358999999999999999999999999999999999988 4589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. ..+++.++|+||++.+++. |++||+.++. +.+ +++++++++.+|+.+ -.|+.+|..
T Consensus 406 ~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~- 473 (592)
T PRK10790 406 SSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ- 473 (592)
T ss_pred hhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC-
Confidence 43 4678899999999988765 9999998752 122 244677888887654 345666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++.+ ++|+|++||++ +....+|++++|. +
T Consensus 474 g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~ii~l~-~ 549 (592)
T PRK10790 474 GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTILVLH-R 549 (592)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEE-C
Confidence 468999999999999999999999999999999999999999999999865 79999999997 4567899999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|+.++
T Consensus 550 G~i~~~G~~~~ 560 (592)
T PRK10790 550 GQAVEQGTHQQ 560 (592)
T ss_pred CEEEEEcCHHH
Confidence 99999999743
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=309.22 Aligned_cols=180 Identities=26% Similarity=0.418 Sum_probs=152.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-------QKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+|||||||||||++|.|...|+ +|+|.++|.+++.... ++.+|||+|+..+++++||+||+.....
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~ 109 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL 109 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHH
Confidence 47999999999999999999999997 9999999988765432 3569999999999999999999998765
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCccccc-ccccCCcccccCccccch
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICAD-TIVGDPMRRGVSGGQKKR 152 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-t~vg~~~~rgLSGGqkqR 152 (1252)
+.+.... +.+.+++++++.+||.+..+ +.+.+ ||||||||
T Consensus 110 ~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~~~p~e-----LSGGqqQR 150 (226)
T COG1136 110 IAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLKKKPSE-----LSGGQQQR 150 (226)
T ss_pred HcCCChh----------------------------------HHHHHHHHHHHhcCChhhhccCCchh-----cCHHHHHH
Confidence 4422100 01223577888999997665 77766 99999999
Q ss_pred hHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcE
Q 000853 153 LTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKI 224 (1252)
Q Consensus 153 vsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i 224 (1252)
|||||||+.+|+|++.||||.+||+.++..|++.++++.+..|+|+++.+| .+++...|||++.|.+|++
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTH--d~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH--DPELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcC--CHHHHHhCCEEEEEeCCee
Confidence 999999999999999999999999999999999999999877888877654 4578889999999999994
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=324.53 Aligned_cols=215 Identities=24% Similarity=0.288 Sum_probs=172.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee-
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP- 729 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 729 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccc
Confidence 377888887653 2358999999999999999999999999999999999877 458999999976
Q ss_pred ----CCcc-------cccceEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 000853 730 ----KVQH-------TFARISGYCEQNDI--HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSL 795 (1252)
Q Consensus 730 ----~~~~-------~~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~ 795 (1252)
+... ..++.++|++|++. ..+..|+.||+.+...... . ......++.+.++++.+++.+ ..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~-~-~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG-A-RHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhc-c-cchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 3221 12346899999974 3456799999875432111 0 111233467889999999963 44443
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcce
Q 000853 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDL 874 (1252)
Q Consensus 796 ~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~ 874 (1252)
++.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++.+.+|++
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 4689999999999999999999999999999999999999999999998754 899999999975 466678999
Q ss_pred eeeecCcEEEEecCC
Q 000853 875 ILMKNGGRIIYSGPL 889 (1252)
Q Consensus 875 ~~l~~~G~~~~~g~~ 889 (1252)
++|. +|++++.|++
T Consensus 220 ~~l~-~G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQ-QGRVVESGLT 233 (253)
T ss_pred EEEE-CCEEEEECCH
Confidence 9997 5899999886
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=279.77 Aligned_cols=205 Identities=27% Similarity=0.361 Sum_probs=174.2
Q ss_pred cccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC--c-------ccccceEEEEccC
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV--Q-------HTFARISGYCEQN 745 (1252)
Q Consensus 675 ~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--~-------~~~~~~~~~v~q~ 745 (1252)
+..++|.||+++.+.||.+.++||||||||||++.|.-+.. +.+|+..|.|...+ . ...|+.+|+|+|+
T Consensus 13 g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqq 90 (242)
T COG4161 13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90 (242)
T ss_pred ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEecccccccccCccHHHHHHHHHhhhhhhhh
Confidence 45679999999999999999999999999999999986554 45899999875321 1 2467789999999
Q ss_pred CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEE
Q 000853 746 DIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 825 (1252)
Q Consensus 746 ~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~il 825 (1252)
..++|.+||.||+.-+- .|. ...++++.+.+..++|+.+.|.+.+|+. +-.|||||+|||+|||||+.+|++|
T Consensus 91 y~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~-----plhlsggqqqrvaiaralmmkpqvl 163 (242)
T COG4161 91 YNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRY-----PLHLSGGQQQRVAIARALMMEPQVL 163 (242)
T ss_pred hccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccC-----ceecccchhhhHHHHHHHhcCCcEE
Confidence 99999999999997542 222 2456677778899999999999999876 5689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 826 FMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 826 llDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
++||||+.|||+-..++.++|++++..|.|-+++||..+. .-..+.+++.|. +|+|++.|+..
T Consensus 164 lfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme-~g~ive~g~a~ 226 (242)
T COG4161 164 LFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYME-NGHIVEQGDAS 226 (242)
T ss_pred eecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeee-cCeeEeecchh
Confidence 9999999999999999999999999999999999997542 234567888886 59999999863
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=356.43 Aligned_cols=217 Identities=28% Similarity=0.348 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 378888887663 2458999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQH----TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~~----~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
... .+++.+||++|++.+++.+||.||+.++...+........+.++++.++++.+++.+..+.. +.+|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCH
Confidence 421 24567999999998889999999998853211111112334456788999999997665554 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.+ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999975 56678999999974 898877
Q ss_pred cCC
Q 000853 887 GPL 889 (1252)
Q Consensus 887 g~~ 889 (1252)
++.
T Consensus 222 ~~~ 224 (501)
T PRK11288 222 FDD 224 (501)
T ss_pred cCc
Confidence 754
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=323.53 Aligned_cols=199 Identities=25% Similarity=0.362 Sum_probs=168.4
Q ss_pred cccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCCHH
Q 000853 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNITVE 755 (1252)
Q Consensus 679 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~~tv~ 755 (1252)
+|+|+||++++||+++|+||||||||||+++|+|..+ + +|+|.++|.++.. ...++.++|++|++.+++.+|+.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP--G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7899999999999999999999999999999999874 3 7999999987643 22345689999998888889999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCcEEEEe
Q 000853 756 ESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 828 (1252)
Q Consensus 756 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~-------~p~illlD 828 (1252)
||+.+..... ...+...++++++++.+++.+..++. ++.||||||||++||+||+. +|++|+||
T Consensus 88 ~nl~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPDK----TRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCccC----CCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 9998763211 12233356688999999998766554 46899999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 829 EPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 829 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
|||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|. +|++++.|+.++
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~~ 219 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLK-QGKLLASGRRDE 219 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEECCHHH
Confidence 999999999999999999999877999999999975 4778899999997 589999998643
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=323.51 Aligned_cols=220 Identities=25% Similarity=0.307 Sum_probs=175.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC--C-CeEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... + .+.+|+|.+||
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 467888887652 2458999999999999999999999999999999999753 1 12589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ...++.++|++|++.+++. |+.||+.+...... ....+..++++.+.++.+++.+...... +..+.
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKL-DKSAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcc
Confidence 87642 2346679999999887774 99999987643221 1122334567888999998854321111 22357
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...+|++++|. +|+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~-~G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFL-NGE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEE-CCe
Confidence 8999999999999999999999999999999999999999999999964 899999999975 5667778888886 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|++.
T Consensus 223 i~~~g~~~ 230 (250)
T PRK14266 223 IIESGLTD 230 (250)
T ss_pred EEEeCCHH
Confidence 99999864
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=366.15 Aligned_cols=214 Identities=26% Similarity=0.430 Sum_probs=180.4
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++++|+++.++. +++.+|+|+|++++|||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 35999999998742 12468999999999999999999999999999999999887 458999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc------ccccccCCC
Q 000853 730 KVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI------KYSLVGLPG 800 (1252)
Q Consensus 730 ~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~g~~~ 800 (1252)
+.. ..+++.++||+|++.++. .|++||+.++. ++. .++.++++++..++.+. .|+.+|..
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~- 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA-----PNA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEG- 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC-----Ccc----CHHHHHHHHHHcCCHHHHcCccccCchhcCC-
Confidence 643 457788999999998765 69999998752 122 23457888888888654 35666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++ ....+|++++|. +
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~-~ 548 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMD-N 548 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEe-C
Confidence 46899999999999999999999999999999999999999999999986 4899999999975 456799999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|+.++
T Consensus 549 G~i~~~g~~~~ 559 (574)
T PRK11160 549 GQIIEQGTHQE 559 (574)
T ss_pred CeEEEeCCHHH
Confidence 89999998643
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=377.76 Aligned_cols=211 Identities=25% Similarity=0.398 Sum_probs=177.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.|+. .++.+|+|+|++|++||.+||+||||||||||+|+|+|.++ |.+|+|.+||.++
T Consensus 477 ~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 543 (710)
T TIGR03796 477 YVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIPR 543 (710)
T ss_pred eEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeH
Confidence 5899999998753 13469999999999999999999999999999999999987 4589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. ..+|+.+|||+|++.++ +.|++||+.++. ++.+ ++++.++++..++.+ ..|+.+|+.+
T Consensus 544 ~~~~~~~lr~~i~~v~Q~~~lf-~gTi~eNi~l~~-----~~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 544 EEIPREVLANSVAMVDQDIFLF-EGTVRDNLTLWD-----PTIP----DADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred HHCCHHHHHhheeEEecCChhh-hccHHHHhhCCC-----CCCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 43 45788999999999876 469999997641 1222 234666777776654 3466676554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
.+||||||||++|||||+++|++|+||||||+||+.++..+.+.|++ .++|+|++||+++ ....+|++++|. +
T Consensus 614 -~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~-~ 686 (710)
T TIGR03796 614 -ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLE-R 686 (710)
T ss_pred -CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEe-C
Confidence 68999999999999999999999999999999999999999999986 4899999999864 567899999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|+.++
T Consensus 687 G~i~~~G~~~~ 697 (710)
T TIGR03796 687 GKVVQRGTHEE 697 (710)
T ss_pred CEEEEecCHHH
Confidence 99999999743
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=305.05 Aligned_cols=169 Identities=28% Similarity=0.448 Sum_probs=148.1
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEccc
Confidence 4667776552 2358999999999999999999999999999999999876 458999999987543
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 733 --HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 733 --~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
..+++.++|++|++.+++..|+.||+. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 234567999999998888899999873 9999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||+++ ++.+.+|++++|.+ |+
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~-g~ 172 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNN-GR 172 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeC-CC
Confidence 999999999999999999999999999999999999999877899999999975 56668899999975 54
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=312.84 Aligned_cols=196 Identities=26% Similarity=0.334 Sum_probs=163.1
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 67888877652 2458999999999999999999999999999999999876 45899999998753
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000853 732 QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKR 811 (1252)
Q Consensus 732 ~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqr 811 (1252)
....++.++|++|++.+++..|+.||+.+....+. .. .+.+.++++.+|+.+..+.. ++.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLP-----FGYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCC-----hhhcCHHHHHH
Confidence 22256678999999888888999999987654321 11 23478899999998765544 46899999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeee
Q 000853 812 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILM 877 (1252)
Q Consensus 812 v~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 877 (1252)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++ .. |+++.+
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~-~~-~~~~~~ 198 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GL-PG-ARELDL 198 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hh-cc-CcEEee
Confidence 99999999999999999999999999999999999998877999999999975 33 33 777665
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=325.91 Aligned_cols=209 Identities=27% Similarity=0.382 Sum_probs=163.8
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++. .++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 68 (234)
T cd03251 2 EFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhh
Confidence 46677765531 11358999999999999999999999999999999999887 468999999987532
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHc--CCcccccccccCCCCC
Q 000853 733 ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAE-----FVNEVLQTI--ELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 733 ---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~g~~~~~ 802 (1252)
...++.++|++|++.+++ .|++||+.+.... .......+ .+.+.++.+ ++.+..+. .+.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~ 137 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGE-----RGV 137 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeecc-----CCC
Confidence 234567999999987765 6999999875321 11111111 234444444 44433332 256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++ ..+|++++|.+ |+
T Consensus 138 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~v~~l~~-G~ 213 (234)
T cd03251 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TI-ENADRIVVLED-GK 213 (234)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HH-hhCCEEEEecC-Ce
Confidence 8999999999999999999999999999999999999999999999964 899999999975 34 45999999975 89
Q ss_pred EEEecCC
Q 000853 883 IIYSGPL 889 (1252)
Q Consensus 883 ~~~~g~~ 889 (1252)
+++.|++
T Consensus 214 i~~~~~~ 220 (234)
T cd03251 214 IVERGTH 220 (234)
T ss_pred EeeeCCH
Confidence 9998875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=356.36 Aligned_cols=207 Identities=23% Similarity=0.321 Sum_probs=174.2
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc----cccceEEEEccCCCCCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----TFARISGYCEQNDIHSPNI 752 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~~ 752 (1252)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 469999999999999999999999999999999999877 4589999999876421 2356789999999888899
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000853 753 TVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 832 (1252)
Q Consensus 753 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTs 832 (1252)
||+||+.+............++..++++++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 9999998753211111112333456788999999998766655 46899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCc
Q 000853 833 GLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 833 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|. +|++++.|++.+.
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~~~ 221 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILR-DGQWIATQPLAGL 221 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEeecChhhC
Confidence 99999999999999999877999999999975 5667899999997 5899999987654
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=336.74 Aligned_cols=204 Identities=18% Similarity=0.283 Sum_probs=167.1
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 756 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e 756 (1252)
+.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+. ++.+...+.+.+|++|
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~----------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA----------LIAISSGLNGQLTGIE 104 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee----------eEEeccccCCCCcHHH
Confidence 469999999999999999999999999999999999887 4589999999751 1222334556789999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000853 757 SVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 836 (1252)
Q Consensus 757 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~ 836 (1252)
++.+...... ...++..+++.++++.+++.+..+.. ++.||||||||++|||||+.+|++|+|||||+|||+
T Consensus 105 nL~l~~~~~~---~~~~e~~e~i~elLe~lgL~~~ld~~-----~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 105 NIELKGLMMG---LTKEKIKEIIPEIIEFADIGKFIYQP-----VKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHhhhhhcC---CCHHHHHHHHHHHHHHcCChhHhhCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 9987654321 23344456678899999998776655 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCcchhHHHHHhh
Q 000853 837 RAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFES 902 (1252)
Q Consensus 837 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~ 902 (1252)
.++..+.+.|++++++|+|||++||+++ ++...||++++|. +|++++.|++++.......|++.
T Consensus 177 ~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~-~GkIv~~G~~~el~~~~~~~~~~ 240 (549)
T PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLH-YGQVKEYGDIKEVVDHYDEFLKK 240 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEECCHHHHHhhHHHHHHH
Confidence 9999999999999877999999999975 5667799999997 58999999875543334444443
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=372.59 Aligned_cols=212 Identities=27% Similarity=0.407 Sum_probs=175.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.|+.. +++.+|+|+|++|+|||+++|+||||||||||+++|+|..+ +.+|+|.+||+++
T Consensus 478 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i 545 (711)
T TIGR00958 478 LIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ--PTGGQVLLDGVPL 545 (711)
T ss_pred eEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEH
Confidence 58999999988532 13569999999999999999999999999999999999987 4589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. ..+++.++||+|++.++ +.|++||+.++. ++.+ ++++.++++..++.+ ..|+.+|+.
T Consensus 546 ~~~~~~~lr~~i~~v~Q~~~lF-~gTIreNI~~g~-----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~- 614 (711)
T TIGR00958 546 VQYDHHYLHRQVALVGQEPVLF-SGSVRENIAYGL-----TDTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK- 614 (711)
T ss_pred HhcCHHHHHhhceEEecCcccc-ccCHHHHHhcCC-----CCCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC-
Confidence 43 45778899999999876 479999998752 1222 344667777777654 346667654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++||||++++|+||+||||||+||++++..+.+ ... .+++|+|++||+++ ..+.+|++++|. +
T Consensus 615 G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~--~~~~TvIiItHrl~--~i~~aD~IivL~-~ 688 (711)
T TIGR00958 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS--RASRTVLLIAHRLS--TVERADQILVLK-K 688 (711)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc--cCCCeEEEEeccHH--HHHhCCEEEEEE-C
Confidence 46899999999999999999999999999999999999999998 222 35899999999864 567899999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|+.++
T Consensus 689 G~ive~Gt~~e 699 (711)
T TIGR00958 689 GSVVEMGTHKQ 699 (711)
T ss_pred CEEEEeeCHHH
Confidence 89999999643
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=321.69 Aligned_cols=219 Identities=23% Similarity=0.325 Sum_probs=173.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEE------
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR------ 724 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~------ 724 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|...+ .+|+|.
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~--~~G~v~~~G~~~ 74 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI--YDSKIKVDGKVL 74 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CcCceeEcCEEE
Confidence 377888887652 35689999999999999999999999999999999998763 355444
Q ss_pred ECCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000853 725 IGGYPKVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801 (1252)
Q Consensus 725 ~~g~~~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 801 (1252)
++|.+... ...++.++|++|++.+++.+|++||+.+...... ....++..+.+.++++.+++.+...... +..+
T Consensus 75 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 151 (257)
T PRK14246 75 YFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRL-NSPA 151 (257)
T ss_pred ECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhh-cCCc
Confidence 44554321 2346679999999998889999999998754321 1123344466889999999864211111 1124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
..||+|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+...+|++++|. +|
T Consensus 152 ~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~-~g 228 (257)
T PRK14246 152 SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLY-NG 228 (257)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEE-CC
Confidence 68999999999999999999999999999999999999999999999865 699999999975 4567899999997 58
Q ss_pred EEEEecCCC
Q 000853 882 RIIYSGPLG 890 (1252)
Q Consensus 882 ~~~~~g~~~ 890 (1252)
+++..|+.+
T Consensus 229 ~i~~~g~~~ 237 (257)
T PRK14246 229 ELVEWGSSN 237 (257)
T ss_pred EEEEECCHH
Confidence 999999864
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=327.54 Aligned_cols=223 Identities=25% Similarity=0.327 Sum_probs=175.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC---CeEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~~~g 727 (1252)
.+.++|+++.++ ++.+|+++||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 578899987663 24589999999999999999999999999999999998642 14689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCC---------CC-CHHHHHHHHHHHHHHcCCcccc
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSP---------EI-DLKTKAEFVNEVLQTIELDGIK 792 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~---------~~-~~~~~~~~~~~~l~~~~l~~~~ 792 (1252)
.++.. ...++.++|++|++.+++ .||+||+.+....+... .. ..+..++.+.++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87542 134567999999988776 59999999865322100 01 1122346688899999885322
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhc
Q 000853 793 YSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFD 872 (1252)
Q Consensus 793 ~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 872 (1252)
.... ...+.+||||||||++||+||+++|+||||||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+|
T Consensus 191 ~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 1111 123578999999999999999999999999999999999999999999999976 589999999975 4667889
Q ss_pred ceeeeecCcEEEEecCCC
Q 000853 873 DLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 873 ~~~~l~~~G~~~~~g~~~ 890 (1252)
+++++.++|++++.|+++
T Consensus 268 ~i~~~l~~G~i~~~g~~~ 285 (305)
T PRK14264 268 QTAVFLTGGELVEYDDTD 285 (305)
T ss_pred EEEEEecCCEEEEeCCHH
Confidence 976544569999999864
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=318.13 Aligned_cols=209 Identities=25% Similarity=0.417 Sum_probs=167.3
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++. +++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhH
Confidence 667888775521 12469999999999999999999999999999999999876 45899999998753
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccccccc------CCCCC
Q 000853 732 Q---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVG------LPGVS 802 (1252)
Q Consensus 732 ~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g------~~~~~ 802 (1252)
. ...++.++|++|++.+++ .|+.||+.+... ... .+.+.+.++.+++.+..+.... ...+.
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 234567899999987776 699999976421 111 2335677888888765554321 11246
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ..+.+|+++++.+ |+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~--~~~~~d~v~~l~~-g~ 215 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPS--LLDLVDRIIVMDS-GR 215 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH--HHHhCCEEEEEeC-Ce
Confidence 8999999999999999999999999999999999999999999999876 489999999975 3478999999974 88
Q ss_pred EEEec
Q 000853 883 IIYSG 887 (1252)
Q Consensus 883 ~~~~g 887 (1252)
+++.|
T Consensus 216 i~~~~ 220 (220)
T cd03245 216 IVADG 220 (220)
T ss_pred EeecC
Confidence 87654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=310.28 Aligned_cols=174 Identities=24% Similarity=0.330 Sum_probs=150.5
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCH
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSA 90 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHHhhhheEEeccCcccccCCcH
Confidence 468999999999999999999999999999999999876 458999999987532 2345678999999888888999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000853 755 EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgL 834 (1252)
.||+.+....+. . + ++.+.++++.+++.+..++. +..||||||||++|||+++.+|++++|||||+||
T Consensus 91 ~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 158 (198)
T TIGR01189 91 LENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLP-----AAQLSAGQQRRLALARLWLSRAPLWILDEPTTAL 158 (198)
T ss_pred HHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 999988654331 1 1 23578889999998766654 4689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 000853 835 DARAAAIVMRAVKNVVETGRTVVCTIHQPS 864 (1252)
Q Consensus 835 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 864 (1252)
|+.++..+.+.|++++++|.|||++||++.
T Consensus 159 D~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 159 DKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 999999999999998777999999999874
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=324.09 Aligned_cols=210 Identities=27% Similarity=0.390 Sum_probs=161.4
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++.. +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~~~----------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPSR----------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCCC----------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhh
Confidence 467777655310 12468999999999999999999999999999999999876 458999999987532
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCCCC
Q 000853 733 ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIK-------YSLVGLPGVS 802 (1252)
Q Consensus 733 ---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~g~~~~~ 802 (1252)
...++.++|++|++.+++ .|++||+.+....+ ..+. ..+.++..++.+.. ++.. ...+.
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~ 138 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEE----VEEAAKKANIHDFIMSLPDGYDTLV-GERGS 138 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHH----HHHHHHHcChHHHHHhhccccceee-ccCCc
Confidence 233567999999987765 69999998753211 1111 22223333322211 1111 12257
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||++||+++ ++ +.||++++|.+ |+
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~ 214 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQ 214 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CE
Confidence 899999999999999999999999999999999999999999999987 6899999999975 34 57999999975 89
Q ss_pred EEEecCC
Q 000853 883 IIYSGPL 889 (1252)
Q Consensus 883 ~~~~g~~ 889 (1252)
+++.|+.
T Consensus 215 i~~~~~~ 221 (238)
T cd03249 215 VVEQGTH 221 (238)
T ss_pred EEEeCCH
Confidence 9999875
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=286.35 Aligned_cols=199 Identities=23% Similarity=0.363 Sum_probs=170.1
Q ss_pred cccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCC
Q 000853 671 GFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDI 747 (1252)
Q Consensus 671 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~ 747 (1252)
++...+..+|+++||++.+||..+|.||||||||||+|+++.+.+ +++|.+++.|++++. ..+|+.++||.|.+.
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis--p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~pa 87 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPA 87 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC--CCCceEEEcCccccccChHHHHHHHHHHHcCcc
Confidence 344456789999999999999999999999999999999999887 569999999998653 568899999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000853 748 HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 827 (1252)
Q Consensus 748 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illl 827 (1252)
+++ -||+||+.|.-.+|... .+ .....+.|+.+++.+..-++ .+.+||||||||++|+|-|..-|+||+|
T Consensus 88 Lfg-~tVeDNlifP~~~r~rr-~d----r~aa~~llar~~l~~~~L~k----~it~lSGGE~QriAliR~Lq~~P~ILLL 157 (223)
T COG4619 88 LFG-DTVEDNLIFPWQIRNRR-PD----RAAALDLLARFALPDSILTK----NITELSGGEKQRIALIRNLQFMPKILLL 157 (223)
T ss_pred ccc-cchhhccccchHHhccC-CC----hHHHHHHHHHcCCchhhhcc----hhhhccchHHHHHHHHHHhhcCCceEEe
Confidence 976 49999999998777432 22 23466788999987654332 3568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 828 DEPTSGLDARAAAIVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 828 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
|||||.||+.+++.|.++|.++. ++.+.++.+||+++ +....+|+++-+.. |++
T Consensus 158 DE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~-G~~ 212 (223)
T COG4619 158 DEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQP-GHA 212 (223)
T ss_pred cCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEecc-Ccc
Confidence 99999999999999999999987 66899999999986 55789999999975 543
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=371.77 Aligned_cols=212 Identities=28% Similarity=0.434 Sum_probs=178.9
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.|+. .++.+|+|+|++|+|||++||+|+||||||||+|+|+|.++ +.+|+|.+||.++
T Consensus 463 ~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~l 529 (694)
T TIGR03375 463 EIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVDI 529 (694)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEh
Confidence 5899999998842 13469999999999999999999999999999999999987 4589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. ..+|+.++||+|++.++. .|++||+.++. ++.+ ++++.++++..++.+ ..|+.+|+.
T Consensus 530 ~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~- 598 (694)
T TIGR03375 530 RQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGER- 598 (694)
T ss_pred hhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCC----HHHHHHHHHHcChHHHHHhCcccccceecCC-
Confidence 43 467889999999998765 59999998642 1222 234566677666543 346677765
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|++++||||||+||+.++..+++.|+++.+ ++|+|++||+++ ....+|++++|. +
T Consensus 599 G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~-~ 674 (694)
T TIGR03375 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMD-N 674 (694)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe-C
Confidence 468999999999999999999999999999999999999999999999864 899999999974 568899999997 5
Q ss_pred cEEEEecCCC
Q 000853 881 GRIIYSGPLG 890 (1252)
Q Consensus 881 G~~~~~g~~~ 890 (1252)
|++++.|+.+
T Consensus 675 G~i~e~G~~~ 684 (694)
T TIGR03375 675 GRIVADGPKD 684 (694)
T ss_pred CEEEeeCCHH
Confidence 9999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=332.76 Aligned_cols=220 Identities=27% Similarity=0.401 Sum_probs=189.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
-++.+|++.++ +..++|+||||++++||++|++|.||||||||+|+|+|.++ +++|+|.+||++.
T Consensus 8 ll~~~~i~K~F-------------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSF-------------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEc-------------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEc
Confidence 46788887655 34679999999999999999999999999999999999887 5699999999986
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHHccC-CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 731 VQH----TFARISGYCEQNDIHSPNITVEESVIFSAWLRL-SPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 731 ~~~----~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
... ....-|+.|+|+..+.|++||.||+.++...+. ..-.+.+...++..++|+.+++....++.+ .+||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCC
Confidence 432 234468999999999999999999988754433 223456677788999999999864466654 5899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
+||||.|.|||||..+++|||||||||.|+....+.+.+.+++++++|.+||++||.++ |+++.||++.||.+ |+.+.
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~ 225 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVG 225 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEee
Confidence 99999999999999999999999999999999999999999999999999999999986 89999999999975 89999
Q ss_pred ecC-CCCc
Q 000853 886 SGP-LGQH 892 (1252)
Q Consensus 886 ~g~-~~~~ 892 (1252)
.++ ..+.
T Consensus 226 ~~~~~~~~ 233 (500)
T COG1129 226 TRPTAAET 233 (500)
T ss_pred ecccccCC
Confidence 998 4543
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=360.33 Aligned_cols=214 Identities=28% Similarity=0.423 Sum_probs=177.4
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++++|+++.|+. +++.+|+|+|++++|||++||+|+||||||||+|+|+|..+ +.+|+|.+||.+
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEe
Confidence 35899999998742 13468999999999999999999999999999999999987 458999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000853 730 KVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLP 799 (1252)
Q Consensus 730 ~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~ 799 (1252)
+.. ..+|+.++||+|++.+++ .|++||+.++. ++.+ ++.+.++++..++.+ ..|+.+|..
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCC----HHHHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 643 457888999999987765 69999997631 1222 234556666666543 346666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
..+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|++||+++ ....+|++++|.
T Consensus 591 -g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~- 665 (694)
T TIGR01846 591 -GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLE- 665 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEe-
Confidence 46899999999999999999999999999999999999999999999985 5899999999974 457799999997
Q ss_pred CcEEEEecCCCC
Q 000853 880 GGRIIYSGPLGQ 891 (1252)
Q Consensus 880 ~G~~~~~g~~~~ 891 (1252)
+|++++.|+.++
T Consensus 666 ~G~i~~~g~~~~ 677 (694)
T TIGR01846 666 KGQIAESGRHEE 677 (694)
T ss_pred CCEEEEeCCHHH
Confidence 499999999643
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=328.58 Aligned_cols=219 Identities=26% Similarity=0.377 Sum_probs=182.0
Q ss_pred CCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEEC
Q 000853 647 FEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIG 726 (1252)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~ 726 (1252)
.....++|+|+++.|+. ++++|+||||++.||+.+|++||||+||||++++|..... ..+|.|.+|
T Consensus 533 ~~~G~i~fsnvtF~Y~p------------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~iD 598 (790)
T KOG0056|consen 533 VTQGKIEFSNVTFAYDP------------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSITID 598 (790)
T ss_pred ccCCeEEEEEeEEecCC------------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEEEc
Confidence 34557999999998853 4679999999999999999999999999999999998766 458999999
Q ss_pred CeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHH--HHHH-HHcCCcccccccccCCC
Q 000853 727 GYPKVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFV--NEVL-QTIELDGIKYSLVGLPG 800 (1252)
Q Consensus 727 g~~~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~--~~~l-~~~~l~~~~~~~~g~~~ 800 (1252)
|+++.. .+.|+.+|.||||..++ +-|+..|+.|+. +..++++..+.+ ..+- +.+++.+..++++|..+
T Consensus 599 gqdIrnvt~~SLRs~IGVVPQDtvLF-NdTI~yNIryak-----~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERG 672 (790)
T KOG0056|consen 599 GQDIRNVTQSSLRSSIGVVPQDTVLF-NDTILYNIRYAK-----PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERG 672 (790)
T ss_pred CchHHHHHHHHHHHhcCcccCcceee-cceeeeheeecC-----CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcc
Confidence 998643 56888999999998775 569999998863 222333332221 1111 35677888899999876
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
. .|||||||||+|||+++.+|.+++|||+||+||..+++.|+..|.++++ ++|.|++.|+.| ..-.+|.++++. +
T Consensus 673 L-kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLS--TivnAD~ILvi~-~ 747 (790)
T KOG0056|consen 673 L-KLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLS--TIVNADLILVIS-N 747 (790)
T ss_pred c-ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeeh--heecccEEEEEe-C
Confidence 4 6999999999999999999999999999999999999999999999986 899999999976 345789999997 5
Q ss_pred cEEEEecCCC
Q 000853 881 GRIIYSGPLG 890 (1252)
Q Consensus 881 G~~~~~g~~~ 890 (1252)
|+|++.|..+
T Consensus 748 G~IvErG~He 757 (790)
T KOG0056|consen 748 GRIVERGRHE 757 (790)
T ss_pred CeEeecCcHH
Confidence 9999999864
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=318.78 Aligned_cols=220 Identities=23% Similarity=0.308 Sum_probs=169.3
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.++.
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 56788877653 24589999999999999999999999999999999998421156899999998753
Q ss_pred cc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHH-ccCC-C--CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000853 732 QH---T-FARISGYCEQNDIHSPNITVEESVIFSAW-LRLS-P--EIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVS 802 (1252)
Q Consensus 732 ~~---~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~-l~~~-~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 802 (1252)
.. . .++.++|++|++.+++.+|+.+++.+... ++.. . ........+++++.++.+++. +..+..+ .+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 21 1 23468999999888887887777654311 1100 0 011122345678889999985 3333322 13
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHH-hcceeeeecCc
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEA-FDDLILMKNGG 881 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~~G 881 (1252)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|. +|
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~-~g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLY-QG 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999999877899999999965 34344 68888886 58
Q ss_pred EEEEecCCC
Q 000853 882 RIIYSGPLG 890 (1252)
Q Consensus 882 ~~~~~g~~~ 890 (1252)
++++.|+++
T Consensus 223 ~i~~~g~~~ 231 (248)
T PRK09580 223 RIVKSGDFT 231 (248)
T ss_pred eEEEeCCHH
Confidence 999999863
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=319.95 Aligned_cols=221 Identities=23% Similarity=0.225 Sum_probs=175.2
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEEC
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIG 726 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~ 726 (1252)
..++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++
T Consensus 15 ~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~ 81 (265)
T PRK14252 15 QKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81 (265)
T ss_pred ceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEc
Confidence 3588999988763 246999999999999999999999999999999999986532 268999999
Q ss_pred CeeCC---c----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000853 727 GYPKV---Q----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP 799 (1252)
Q Consensus 727 g~~~~---~----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 799 (1252)
|.+.. . ..+++.++|++|++.+++. |++||+.+....... ......++.+.++++.+++.+...... ..
T Consensus 82 g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~ 157 (265)
T PRK14252 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV--KRRSILEERVENALRNAALWDEVKDRL-GD 157 (265)
T ss_pred CccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCC--ChHHHHHHHHHHHHHHcCCchhhhHHH-hC
Confidence 97642 1 2346678999999988875 999999876543211 111223456778888887742111111 11
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
.+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.
T Consensus 158 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~- 234 (265)
T PRK14252 158 LAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMY- 234 (265)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEE-
Confidence 2468999999999999999999999999999999999999999999999975 699999999975 5667899999997
Q ss_pred CcEEEEecCCC
Q 000853 880 GGRIIYSGPLG 890 (1252)
Q Consensus 880 ~G~~~~~g~~~ 890 (1252)
+|+++..|+.+
T Consensus 235 ~G~i~~~g~~~ 245 (265)
T PRK14252 235 MGELIEFGATD 245 (265)
T ss_pred CCEEEEeCCHH
Confidence 58999999863
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=344.51 Aligned_cols=193 Identities=22% Similarity=0.401 Sum_probs=159.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
.||||||||+||||+.++|..+++|+ +|+|.+||.|+.+.+. ++.+|+|.|+|++|. -||+|||.|+..
T Consensus 496 ~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~---- 567 (716)
T KOG0058|consen 496 VVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD---- 567 (716)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC----
Confidence 48999999999999999999999997 9999999999987764 578999999999886 699999999753
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
....+++.++.+.++. .+.+ .++++++||.||+. +..||||||||++|||
T Consensus 568 ---~~t~e~i~~AAk~ANa-----------------------h~FI---~~~p~gY~T~VGEk-G~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 568 ---NATDEEIEAAAKMANA-----------------------HEFI---TNFPDGYNTVVGEK-GSQLSGGQKQRIAIAR 617 (716)
T ss_pred ---CCCHHHHHHHHHHhCh-----------------------HHHH---HhCccccccccCCc-cccccchHHHHHHHHH
Confidence 1223333333333221 1232 35999999999982 3349999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
||++||+||||||+||+||++++..+.++|.++.+ ++|+++.- | +-++.+.+|+|+++++|++++.|+++|+.+
T Consensus 618 ALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIA-H-RLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIA-H-RLSTVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEe-h-hhhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 99999999999999999999999999999998864 46776643 3 447889999999999999999999999864
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=308.63 Aligned_cols=194 Identities=21% Similarity=0.294 Sum_probs=161.7
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccc
Confidence 56778877652 2469999999999999999999999999999999999877 46899999998754
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 732 Q--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 732 ~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
. ..+++.++|++|+..+++..||+||+.+..... . . .+.+.++++.+++.+..+.. +.+||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~--~--~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS--P--G----AVGITELCRLFSLEHLIDYP-----CGLLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC--c--c----hHHHHHHHHHcCCchhhhCC-----hhhcCHHHH
Confidence 2 235667999999988888999999998864211 1 1 23578899999987655544 358999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhccee
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLI 875 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~ 875 (1252)
||++|||+++.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ....+|..+
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999999999999999999999999999998777999999999864 345566544
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=303.75 Aligned_cols=158 Identities=29% Similarity=0.444 Sum_probs=141.4
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-----ccccceEEEEccCCCCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-----HTFARISGYCEQNDIHSPN 751 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ 751 (1252)
+.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 458999999999999999999999999999999999877 468999999987542 2346779999999988888
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000853 752 ITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 831 (1252)
Q Consensus 752 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPT 831 (1252)
.|++||+.+. ||||||||++||++|+.+|++++|||||
T Consensus 91 ~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 91 LTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred CCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 9999987532 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 832 SGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 832 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|++++|.+
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~ 176 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRD 176 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC
Confidence 999999999999999999876 899999999964 45567899999975
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=318.56 Aligned_cols=211 Identities=27% Similarity=0.398 Sum_probs=165.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. .+.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYDE------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeH
Confidence 3678888876531 2358999999999999999999999999999999999877 4589999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccc------cCCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLV------GLPGV 801 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------g~~~~ 801 (1252)
.. ..+++.++|++|++.+++. |+.||+.+... .... +.+.+.++.+++.+..+... ....+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 32 2346679999999877665 99999976521 1111 12334444444433222110 01225
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
.+|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++ ++ +.+|++++|. +|
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~-~g 213 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLD-DG 213 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEe-CC
Confidence 7899999999999999999999999999999999999999999999986 4899999999975 34 5699999997 58
Q ss_pred EEEEecCC
Q 000853 882 RIIYSGPL 889 (1252)
Q Consensus 882 ~~~~~g~~ 889 (1252)
++++.|+.
T Consensus 214 ~~~~~~~~ 221 (229)
T cd03254 214 KIIEEGTH 221 (229)
T ss_pred eEEEeCCH
Confidence 99988875
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=318.32 Aligned_cols=199 Identities=24% Similarity=0.375 Sum_probs=166.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc--
Confidence 377888887663 2458999999999999999999999999999999999877 45899999872
Q ss_pred CcccccceEEEEccCCCCCCC--CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 731 VQHTFARISGYCEQNDIHSPN--ITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~--~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
..++|++|++.+++. .|+.+++.+. .... ++++.++++.+++.+..++. +..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHH
Confidence 258999999877665 4788876431 1111 23467899999998776654 46899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|. + ++++.|
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g 202 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSG 202 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeC
Confidence 99999999999999999999999999999999999999999765 899999999975 5667899999984 4 688988
Q ss_pred CCC
Q 000853 888 PLG 890 (1252)
Q Consensus 888 ~~~ 890 (1252)
+++
T Consensus 203 ~~~ 205 (251)
T PRK09544 203 TPE 205 (251)
T ss_pred CHH
Confidence 864
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=358.86 Aligned_cols=221 Identities=21% Similarity=0.254 Sum_probs=180.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.+... .+...+|+||||++++||++||+||||||||||+++|+|.++ +.+|+|.++|..+
T Consensus 12 ~l~v~~l~~~y~~~---------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~ 80 (623)
T PRK10261 12 VLAVENLNIAFMQE---------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLL 80 (623)
T ss_pred eEEEeceEEEecCC---------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEe
Confidence 48899998877421 112469999999999999999999999999999999999887 4589999998633
Q ss_pred C-------------cc---cc-cceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-
Q 000853 731 V-------------QH---TF-ARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG- 790 (1252)
Q Consensus 731 ~-------------~~---~~-~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~- 790 (1252)
. .. .. ++.+|||+|++ .+++.+||.||+.+....+. ....++.++++.++++.+||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCCh
Confidence 1 00 12 24689999997 57788999999998765421 1234455677899999999964
Q ss_pred --cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHH
Q 000853 791 --IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDI 867 (1252)
Q Consensus 791 --~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~ 867 (1252)
..+.. +.+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ .+
T Consensus 159 ~~~~~~~-----~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~ 232 (623)
T PRK10261 159 QTILSRY-----PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VV 232 (623)
T ss_pred hhHHhCC-----CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HH
Confidence 23333 5789999999999999999999999999999999999999999999999865 899999999975 46
Q ss_pred HHHhcceeeeecCcEEEEecCCCC
Q 000853 868 FEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 868 ~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
.+.+|++++|. +|++++.|++.+
T Consensus 233 ~~~adri~vl~-~G~i~~~g~~~~ 255 (623)
T PRK10261 233 AEIADRVLVMY-QGEAVETGSVEQ 255 (623)
T ss_pred HHhCCEEEEee-CCeecccCCHHH
Confidence 67899999997 589999998643
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=313.14 Aligned_cols=209 Identities=23% Similarity=0.269 Sum_probs=165.4
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEEC--Ce-
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIG--GY- 728 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~--g~- 728 (1252)
++++|+++.++.... ...++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCc
Confidence 567888877642100 0012469999999999999999999999999999999999877 458999998 42
Q ss_pred -eCCc---cc----ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCC
Q 000853 729 -PKVQ---HT----FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-KYSLVGLP 799 (1252)
Q Consensus 729 -~~~~---~~----~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~ 799 (1252)
+... .. .++.++|++|++.+++.+|+.|++.+..... ....+...+++.++++.+++.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 3221 11 1346899999998889999999998864332 12233345567889999999753 2333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeee
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILM 877 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 877 (1252)
+.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|+++.+
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~ 222 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDV 222 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEec
Confidence 4689999999999999999999999999999999999999999999999877999999999853 344678988776
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=324.42 Aligned_cols=221 Identities=28% Similarity=0.401 Sum_probs=182.5
Q ss_pred CCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEE
Q 000853 645 LPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR 724 (1252)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~ 724 (1252)
+|.....++.+++.+-.+ ..++++|+|+||++++||.+||+||||||||||.|+|.|..+ +.+|.|.
T Consensus 328 LP~P~g~L~Ve~l~~~PP-----------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~~G~VR 394 (580)
T COG4618 328 LPAPQGALSVERLTAAPP-----------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVR 394 (580)
T ss_pred CCCCCceeeEeeeeecCC-----------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--cCCCcEE
Confidence 444445688888887321 235789999999999999999999999999999999999877 5689999
Q ss_pred ECCeeCC---cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHcCCcccccccc
Q 000853 725 IGGYPKV---QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKA-----EFVNEVLQTIELDGIKYSLV 796 (1252)
Q Consensus 725 ~~g~~~~---~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~ 796 (1252)
+||-+.. ++++-+++||.||+-.+|+ -||.||+. +.. .+.+.+..- ..+.|++ +.+.+-.||.+
T Consensus 395 LDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa---Rf~--~~~d~~kIieAA~lAgvHelI--l~lP~GYdT~i 466 (580)
T COG4618 395 LDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA---RFG--EEADPEKVIEAARLAGVHELI--LRLPQGYDTRI 466 (580)
T ss_pred ecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH---hcc--ccCCHHHHHHHHHHcChHHHH--HhCcCCccCcc
Confidence 9998754 3567789999999987765 59999995 332 233332211 2233433 35677789999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceee
Q 000853 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLIL 876 (1252)
Q Consensus 797 g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~ 876 (1252)
|+.+ ..||||||||+++||||-.+|.+++||||-|+||.+.+..+.+.|.+.+++|.|+|+++|+|+ +...+|++++
T Consensus 467 G~~G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilv 543 (580)
T COG4618 467 GEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILV 543 (580)
T ss_pred CCCC-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeee
Confidence 9765 689999999999999999999999999999999999999999999999999999999999985 6788999999
Q ss_pred eecCcEEEEecCCC
Q 000853 877 MKNGGRIIYSGPLG 890 (1252)
Q Consensus 877 l~~~G~~~~~g~~~ 890 (1252)
|. +|++..+|+.+
T Consensus 544 l~-~G~~~~FG~r~ 556 (580)
T COG4618 544 LQ-DGRIAAFGPRE 556 (580)
T ss_pred ec-CChHHhcCCHH
Confidence 97 59999999974
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=302.61 Aligned_cols=160 Identities=24% Similarity=0.472 Sum_probs=141.7
Q ss_pred cccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc----cccceEEEEccCC---CCCCC
Q 000853 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----TFARISGYCEQND---IHSPN 751 (1252)
Q Consensus 679 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 751 (1252)
+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++ .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 7899999999999999999999999999999999887 4589999999876432 2456799999985 46788
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000853 752 ITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 831 (1252)
Q Consensus 752 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPT 831 (1252)
+|++||+.+... ||||||||++|||||+.+|++|+|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999976421 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 832 SGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 832 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+|||+.++..+.+.|+++.++|+|+|++||+++ ++.+.+|++++|.+ |+
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~-G~ 181 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYE-GR 181 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecC-Cc
Confidence 999999999999999999777899999999974 56677999999975 65
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=352.63 Aligned_cols=215 Identities=24% Similarity=0.278 Sum_probs=174.9
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECC-----
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG----- 727 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g----- 727 (1252)
+++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+..+.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~ 68 (520)
T TIGR03269 2 EVKNLTKKFD-------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEK 68 (520)
T ss_pred EEEEEEEEEC-------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccc
Confidence 4677776652 3469999999999999999999999999999999999852114589999972
Q ss_pred ------------------eeCC----------c---ccccceEEEEccC-CCCCCCCCHHHHHHHHHHccCCCCCCHHHH
Q 000853 728 ------------------YPKV----------Q---HTFARISGYCEQN-DIHSPNITVEESVIFSAWLRLSPEIDLKTK 775 (1252)
Q Consensus 728 ------------------~~~~----------~---~~~~~~~~~v~q~-~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~ 775 (1252)
.++. . ...++.++|++|+ +.+++.+|++|++.+...... ...++.
T Consensus 69 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~~~~ 145 (520)
T TIGR03269 69 CGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG---YEGKEA 145 (520)
T ss_pred ccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcC---CCHHHH
Confidence 2110 0 1235578999997 577788999999998754332 233445
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCC
Q 000853 776 AEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGR 854 (1252)
Q Consensus 776 ~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~ 854 (1252)
++++.++++.+||.+..+.. +.+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ .|+
T Consensus 146 ~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 220 (520)
T TIGR03269 146 VGRAVDLIEMVQLSHRITHI-----ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220 (520)
T ss_pred HHHHHHHHHHcCChhhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 56789999999998766554 468999999999999999999999999999999999999999999999965 489
Q ss_pred EEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 855 TVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 855 tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
|||++||+++ .+.+.||++++|.+ |++++.|+++
T Consensus 221 tviivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 254 (520)
T TIGR03269 221 SMVLTSHWPE-VIEDLSDKAIWLEN-GEIKEEGTPD 254 (520)
T ss_pred EEEEEeCCHH-HHHHhcCEEEEEeC-CEEeeecCHH
Confidence 9999999975 46678999999974 8999988864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=314.36 Aligned_cols=208 Identities=22% Similarity=0.332 Sum_probs=166.8
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++. +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 69 (221)
T cd03244 3 IEFKNVSLRYRP-----------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE--LSSGSILIDGVDIS 69 (221)
T ss_pred EEEEEEEEecCC-----------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhH
Confidence 678888876632 12469999999999999999999999999999999999876 46899999998753
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCC
Q 000853 732 Q---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYS-------LVGLPGV 801 (1252)
Q Consensus 732 ~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~g~~~~ 801 (1252)
. ..+++.++|++|++.+++ .|++||+.+.. ... .+++.+.++.+++.+..+. .. ...+
T Consensus 70 ~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~ 137 (221)
T cd03244 70 KIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVV-EEGG 137 (221)
T ss_pred hCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhccccccccc-ccCC
Confidence 2 245678999999988665 69999986431 111 1235566677776554321 11 1235
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++ ..+|++++|. +|
T Consensus 138 ~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~-~g 213 (221)
T cd03244 138 ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TI-IDSDRILVLD-KG 213 (221)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-hhCCEEEEEE-CC
Confidence 78999999999999999999999999999999999999999999999864 689999999975 34 5689999997 58
Q ss_pred EEEEecC
Q 000853 882 RIIYSGP 888 (1252)
Q Consensus 882 ~~~~~g~ 888 (1252)
++++.|+
T Consensus 214 ~~~~~~~ 220 (221)
T cd03244 214 RVVEFDS 220 (221)
T ss_pred eEEecCC
Confidence 9998876
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=320.75 Aligned_cols=209 Identities=27% Similarity=0.389 Sum_probs=162.6
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++. ++.+++|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.+||.++..
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~~ 67 (236)
T cd03253 2 EFENVTFAYDP------------GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIRE 67 (236)
T ss_pred EEEEEEEEeCC------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhhh
Confidence 46777765421 2458999999999999999999999999999999999876 468999999987542
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCC
Q 000853 733 ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYS-------LVGLPGVS 802 (1252)
Q Consensus 733 ---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~g~~~~~ 802 (1252)
..+++.++|++|++.+++ .|++||+.+... ....+ .+.+.++..++.+..+. .. ...++
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~----~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~ 136 (236)
T cd03253 68 VTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDE----EVIEAAKAAQIHDKIMRFPDGYDTIV-GERGL 136 (236)
T ss_pred CCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHH----HHHHHHHHcCcHHHHHhccccccchh-hcCCC
Confidence 234567999999987764 799999987531 11111 12333444443322111 11 11256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ |.|||++||+++ .+ ..+|++++|.+ |+
T Consensus 137 ~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~~-g~ 212 (236)
T cd03253 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLKD-GR 212 (236)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999976 899999999975 34 55999999975 89
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+.+
T Consensus 213 i~~~~~~~ 220 (236)
T cd03253 213 IVERGTHE 220 (236)
T ss_pred EEeeCCHH
Confidence 99988753
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=317.13 Aligned_cols=207 Identities=26% Similarity=0.394 Sum_probs=164.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++.. +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 78 (226)
T cd03248 11 IVKFQNVTFAYPTR----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--PQGGQVLLDGKPI 78 (226)
T ss_pred eEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCCch
Confidence 47889998877421 12358999999999999999999999999999999999876 4589999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH-HH--HHHHHHHHHHHc--CCcccccccccCCCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDL-KT--KAEFVNEVLQTI--ELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~-~~--~~~~~~~~l~~~--~l~~~~~~~~g~~~~~ 802 (1252)
.. ...++.++|++|++.+++ .|++||+.+..... .... .+ ....+++.++.+ |+.+..+.. ++
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~ 149 (226)
T cd03248 79 SQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC---SFECVKEAAQKAHAHSFISELASGYDTEVGEK-----GS 149 (226)
T ss_pred HHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCC---CHHHHHHHHHHcCcHHHHHhccccccchhhcC-----CC
Confidence 32 234567999999987765 69999998753211 1110 01 112356777777 666554443 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++ ..+|++++|.+ |+
T Consensus 150 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~-g~ 225 (226)
T cd03248 150 QLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVLDG-GR 225 (226)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEecC-Cc
Confidence 8999999999999999999999999999999999999999999999865 689999999975 34 56999999975 65
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=350.80 Aligned_cols=223 Identities=20% Similarity=0.260 Sum_probs=180.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++.. .+.+.+|+|+||++++||++||+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQ---------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCC---------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 37888888876421 01246999999999999999999999999999999999987642 2589999999
Q ss_pred eeCCcc------cc-cceEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc---cccc
Q 000853 728 YPKVQH------TF-ARISGYCEQNDI--HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI---KYSL 795 (1252)
Q Consensus 728 ~~~~~~------~~-~~~~~~v~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~ 795 (1252)
.++... .. ++.+||++|++. +.+.+|++|++.+...... .....+..++++++++.+||.+. .++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 886421 12 246899999974 5567899999876543211 12334456778999999999753 3433
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcce
Q 000853 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDL 874 (1252)
Q Consensus 796 ~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~ 874 (1252)
+.+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ .+...+|++
T Consensus 154 -----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri 227 (529)
T PRK15134 154 -----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRV 227 (529)
T ss_pred -----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEE
Confidence 5689999999999999999999999999999999999999999999999765 899999999975 466789999
Q ss_pred eeeecCcEEEEecCCCC
Q 000853 875 ILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 875 ~~l~~~G~~~~~g~~~~ 891 (1252)
++|. +|++++.|++++
T Consensus 228 ~~l~-~G~i~~~g~~~~ 243 (529)
T PRK15134 228 AVMQ-NGRCVEQNRAAT 243 (529)
T ss_pred EEEE-CCEEEEeCCHHH
Confidence 9997 489999988643
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=333.58 Aligned_cols=191 Identities=27% Similarity=0.381 Sum_probs=162.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|+..+++++||+||+.|+.+.++..
T Consensus 32 ~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~- 107 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMP- 107 (356)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCC-
Confidence 47999999999999999999999987 9999999998865433 467999999999999999999999986432110
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
.. +.+.+++++++.+||.+..+..+++ |||||||||+|||||
T Consensus 108 ----~~-----------------------------~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~QRvalARAL 149 (356)
T PRK11650 108 ----KA-----------------------------EIEERVAEAARILELEPLLDRKPRE-----LSGGQRQRVAMGRAI 149 (356)
T ss_pred ----HH-----------------------------HHHHHHHHHHHHcCChhHhhCChhh-----CCHHHHHHHHHHHHH
Confidence 00 0012357789999999888888866 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
+.+|++||||||||+||+.++.++.+.|+++.+..+.|+|++ +|...++..++|+|++|++|+++..|+++++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~v-THd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYV-THDQVEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 999999999999999999999999999999877556666655 55667899999999999999999999988763
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=302.84 Aligned_cols=192 Identities=23% Similarity=0.414 Sum_probs=167.8
Q ss_pred ceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-------ccccceEEEEccCCCCCCCCCH
Q 000853 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-------HTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 682 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
+++|..+.-.++||-|+||||||||+|+|+|... |.+|.|.+||..... ...+|++|||+||-.+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 6777777757999999999999999999999988 559999999975321 2357889999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000853 755 EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgL 834 (1252)
+.||.|+...- ..+..+++.+.+|+.|..++. +..|||||||||+|+|||+++|++|+||||.++|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~-----P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRY-----PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhhC-----CCccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999985321 233468899999999998876 5689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 835 DARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 835 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
|...+.+++-.|++++++ ..-|+.+||.++ |+..++|++++|. +|++..+|+.++
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le-~GkV~A~g~~e~ 215 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLE-NGKVKASGPLEE 215 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEec-CCeEEecCcHHH
Confidence 999999999999999876 788999999875 7889999999997 599999999743
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=311.98 Aligned_cols=196 Identities=26% Similarity=0.359 Sum_probs=160.5
Q ss_pred EEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCC--CCCCHHHHHHHHH
Q 000853 685 GTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHS--PNITVEESVIFSA 762 (1252)
Q Consensus 685 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~~tv~e~l~~~~ 762 (1252)
|++++||+++|+|+||||||||+++|+|..+ +.+|+|.+||.+.. ..++.++|++|++.+. ..+|+.||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 4688999999999999999999999999877 45899999998753 2356789999998653 3489999998753
Q ss_pred Hcc-CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 000853 763 WLR-LSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 841 (1252)
Q Consensus 763 ~l~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~ 841 (1252)
... ..........++++.++++.+++.+..++. +.+||||||||++|||+|+.+|++++|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRP-----VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 211 000011122345688899999998766654 45899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCc
Q 000853 842 VMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 842 i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
+.+.|++++++|+|||++||+++ ++.+.+|+++++ + |++++.|+.++.
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~~~ 199 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHHh
Confidence 99999999877999999999975 567789999887 5 899999987543
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=356.64 Aligned_cols=213 Identities=28% Similarity=0.408 Sum_probs=174.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. +++.+|+|+|++++|||+++|+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 316 ~i~~~~v~~~y~~-----------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~i 382 (544)
T TIGR01842 316 HLSVENVTIVPPG-----------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADL 382 (544)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeh
Confidence 5899999998742 12468999999999999999999999999999999999887 5589999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-------GIKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~~~ 800 (1252)
.. ..+++.++|++|++.+++. |++||+.+.. ++.+++ .+.++++..++. +..|+.+|..
T Consensus 383 ~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~- 451 (544)
T TIGR01842 383 KQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPE----KIIEAAKLAGVHELILRLPDGYDTVIGPG- 451 (544)
T ss_pred hhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHH----HHHHHHHHhChHHHHHhCccccccccCCC-
Confidence 43 3567889999999988765 9999997532 122222 234444444432 2335556544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++.++|+|+|++||+++ ..+.+|++++|.+
T Consensus 452 g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~- 528 (544)
T TIGR01842 452 GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQD- 528 (544)
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC-
Confidence 4689999999999999999999999999999999999999999999998756899999999974 5678999999974
Q ss_pred cEEEEecCCC
Q 000853 881 GRIIYSGPLG 890 (1252)
Q Consensus 881 G~~~~~g~~~ 890 (1252)
|++++.|+.+
T Consensus 529 G~i~~~g~~~ 538 (544)
T TIGR01842 529 GRIARFGERD 538 (544)
T ss_pred CEEEeeCCHH
Confidence 8999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=359.64 Aligned_cols=211 Identities=27% Similarity=0.388 Sum_probs=176.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ++.+|+|+|++++|||+++|+|+||||||||+|+|+|..+ +.+|+|.+||.++
T Consensus 334 ~I~~~~vsf~y~~------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--p~~G~I~i~g~~i 399 (588)
T PRK13657 334 AVEFDDVSFSYDN------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD--PQSGRILIDGTDI 399 (588)
T ss_pred eEEEEEEEEEeCC------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEh
Confidence 5899999998742 1358999999999999999999999999999999999987 4589999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. ..+++.++|++|++.++. .|++||+.++. ++.+ +++++++++.+++.+ ..|+.+|..
T Consensus 400 ~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~-----~~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~~- 468 (588)
T PRK13657 400 RTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR-----PDAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGER- 468 (588)
T ss_pred hhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC-----CCCC----HHHHHHHHHHhCHHHHHHhCcccccchhcCC-
Confidence 43 457788999999998764 69999998741 1222 233566666666543 346666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++.+ ++|+|++||++ +..+.+|++++|. +
T Consensus 469 g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~~tvIiitHr~--~~~~~~D~ii~l~-~ 544 (588)
T PRK13657 469 GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIAHRL--STVRNADRILVFD-N 544 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEEecH--HHHHhCCEEEEEE-C
Confidence 467999999999999999999999999999999999999999999998854 89999999996 4578899999997 5
Q ss_pred cEEEEecCCC
Q 000853 881 GRIIYSGPLG 890 (1252)
Q Consensus 881 G~~~~~g~~~ 890 (1252)
|++++.|+.+
T Consensus 545 G~i~~~g~~~ 554 (588)
T PRK13657 545 GRVVESGSFD 554 (588)
T ss_pred CEEEEeCCHH
Confidence 8999999864
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=300.78 Aligned_cols=175 Identities=26% Similarity=0.486 Sum_probs=148.5
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++. .++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.+...
T Consensus 2 ~~~~~~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 68 (178)
T cd03247 2 SINNVSFSYPE-----------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK--PQQGEITLDGVPVSD 68 (178)
T ss_pred EEEEEEEEeCC-----------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCEEHHH
Confidence 56777766531 11358999999999999999999999999999999999876 458999999987532
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 733 --HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 733 --~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
..+++.++|++|++.+++ .|++||+ +..|||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~q 105 (178)
T cd03247 69 LEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQ 105 (178)
T ss_pred HHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHH
Confidence 234667899999987665 6898886 2479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|++|||||+.+|++|+|||||+|||+.+++.+++.|+++. ++.|||++||+++ ++ +.+|++++|. +|++++.|
T Consensus 106 rv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~-~g~i~~~~ 178 (178)
T cd03247 106 RLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLE-NGKIIMQG 178 (178)
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEE-CCEEEecC
Confidence 9999999999999999999999999999999999999985 4899999999975 34 5789999997 58888754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=303.92 Aligned_cols=183 Identities=26% Similarity=0.343 Sum_probs=152.1
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+++|+||++++||+++|+|+||||||||+++|+|.....+.+|+|.+||.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~ 68 (200)
T cd03217 2 EIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68 (200)
T ss_pred eEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc
Confidence 4667776542 245899999999999999999999999999999999984212568999999988643
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 733 H---T-FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 733 ~---~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
. . .++.++|++|++.+++..|+++++. .. .+.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~~-----~~~LS~G~ 109 (200)
T cd03217 69 LPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------YV-----NEGFSGGE 109 (200)
T ss_pred CCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------hc-----cccCCHHH
Confidence 2 1 2345999999988888888877650 00 13799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHH-HhcceeeeecCcEEEEec
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFE-AFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~-~~d~~~~l~~~G~~~~~g 887 (1252)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++++|||++||+++ .+.+ .+|++++|. +|++++.|
T Consensus 110 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~-~G~i~~~~ 187 (200)
T cd03217 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLY-DGRIVKSG 187 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEE-CCEEEEEc
Confidence 99999999999999999999999999999999999999999877899999999975 3444 689999997 58999998
Q ss_pred CC
Q 000853 888 PL 889 (1252)
Q Consensus 888 ~~ 889 (1252)
+.
T Consensus 188 ~~ 189 (200)
T cd03217 188 DK 189 (200)
T ss_pred cH
Confidence 54
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=298.75 Aligned_cols=168 Identities=29% Similarity=0.484 Sum_probs=145.1
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++. +++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 68 (173)
T cd03246 2 EVENVSFRYPG-----------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQ 68 (173)
T ss_pred EEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEccc
Confidence 46777765531 12458999999999999999999999999999999999877 458999999987542
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 733 ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 733 ---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
..+++.++|++|++.+++ .|++||+ ||||||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~~ 102 (173)
T cd03246 69 WDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQR 102 (173)
T ss_pred CCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHHH
Confidence 234667999999987766 4999886 999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
||++|||+|+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ..+.+|++++|.+ |+
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-G~ 172 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE--TLASADRILVLED-GR 172 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEEEC-CC
Confidence 9999999999999999999999999999999999999999877999999999874 3467999999975 65
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=331.33 Aligned_cols=191 Identities=24% Similarity=0.393 Sum_probs=162.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|+..+|+++||+||+.|+.+.++...
T Consensus 34 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~ 110 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK 110 (351)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCH
Confidence 47999999999999999999999987 9999999998865444 4679999999999999999999999865432100
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
. +.+.+++++++.+||.+..+..+.+ |||||||||+|||||
T Consensus 111 -----~-----------------------------~~~~~v~~~l~~~gl~~~~~r~~~~-----LSgGq~QRVaLARaL 151 (351)
T PRK11432 111 -----E-----------------------------ERKQRVKEALELVDLAGFEDRYVDQ-----ISGGQQQRVALARAL 151 (351)
T ss_pred -----H-----------------------------HHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHH
Confidence 0 0112457789999999888887765 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
+.+|++||||||||+||+.++.++.+.|+++.+..+.|+++ ++|...++..++|+|++|++|+++..|+++++.
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~-vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLY-VTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999987755666655 556677899999999999999999999988763
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=331.97 Aligned_cols=191 Identities=24% Similarity=0.400 Sum_probs=162.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..+|+++||+||+.|+.+.+...
T Consensus 32 ~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~- 107 (353)
T TIGR03265 32 FVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMG- 107 (353)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCC-
Confidence 47999999999999999999999987 9999999998865433 467999999999999999999999986432110
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
.. +.+.+++++++.+||.+..++.+.+ |||||||||+|||||
T Consensus 108 ----~~-----------------------------~~~~~~~~~l~~l~L~~~~~~~~~~-----LSgGq~QRvaLARaL 149 (353)
T TIGR03265 108 ----RA-----------------------------EVAERVAELLDLVGLPGSERKYPGQ-----LSGGQQQRVALARAL 149 (353)
T ss_pred ----HH-----------------------------HHHHHHHHHHHHcCCCchhhCChhh-----CCHHHHHHHHHHHHH
Confidence 00 0112457899999999988888765 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
+.+|++||||||||+||+.++.++.+.|+++.+..+.|+|++ +|...++..++|+|++|++|++++.|+++++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~v-THd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMV-THDQEEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-cCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999877656666665 55667999999999999999999999988774
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=355.72 Aligned_cols=192 Identities=27% Similarity=0.444 Sum_probs=159.7
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
++|+|+||||||||+|+|+|+++|. +|+|.+||.++..... |+.++||+|++.+| +.||+||+.++..
T Consensus 502 vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gSI~eNi~l~~p----- 572 (709)
T COG2274 502 VAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF-SGSIRENIALGNP----- 572 (709)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhh-cCcHHHHHhcCCC-----
Confidence 7999999999999999999999997 9999999999876553 68899999976665 5799999987531
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
....+++.++.+.++. . +. ...+|.++||.||| ++.+||||||||++||||
T Consensus 573 --~~~~e~i~~A~~~ag~------------------~-----~f---I~~lP~gy~t~v~E-~G~~LSGGQrQrlalARa 623 (709)
T COG2274 573 --EATDEEIIEAAQLAGA------------------H-----EF---IENLPMGYDTPVGE-GGANLSGGQRQRLALARA 623 (709)
T ss_pred --CCCHHHHHHHHHHhCc------------------H-----HH---HHhccccccccccc-CCCCCCHHHHHHHHHHHH
Confidence 1122333333333221 1 22 23499999999998 567799999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|+++|+||+||||||+||+.++..|.+.|+++. .++|+|+..|.+ .+.+.||||+||++|+++++|+++++.+
T Consensus 624 Ll~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl--~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 624 LLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRL--STIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred hccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccc--hHhhhccEEEEccCCceeccCCHHHHHH
Confidence 999999999999999999999999999999885 467888776654 6889999999999999999999999875
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=354.03 Aligned_cols=188 Identities=27% Similarity=0.416 Sum_probs=158.9
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++++|+++.|+. ++.+|+|+|++++|||++||+||||||||||+|+|+|..+ +.+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~Y~~------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~G~I~i~g~~ 398 (529)
T TIGR02868 333 PTLELRDLSFGYPG------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD--PLQGEVTLDGVS 398 (529)
T ss_pred ceEEEEEEEEecCC------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 35999999998742 1348999999999999999999999999999999999987 569999999987
Q ss_pred CC--cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 730 KV--QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 730 ~~--~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
+. ..++++.++||||++.++. -|++||+.++. ++.+ +++++++++..++.+ ..|+.+|+.+
T Consensus 399 i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~-----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 468 (529)
T TIGR02868 399 VSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGR-----PDAT----DEELWAALERVGLADWLRSLPDGLDTVLGEGG 468 (529)
T ss_pred hhhHHHHHHhheEEEccCccccc-ccHHHHHhccC-----CCCC----HHHHHHHHHHcCCHHHHHhCcccccchhcccc
Confidence 54 4567789999999998765 59999998752 1222 344677777777654 3477787654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQP 863 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 863 (1252)
.+||||||||++|||||+++|+||+||||||+||++++..|++.|+++. +++|+|+++|++
T Consensus 469 -~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 469 -ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 6799999999999999999999999999999999999999999999874 489999999974
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=328.44 Aligned_cols=191 Identities=21% Similarity=0.320 Sum_probs=162.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-------QKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+++++||+||+.|+.+
T Consensus 21 i~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~ 97 (363)
T TIGR01186 21 IFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPE 97 (363)
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999987 9999999998875443 4579999999999999999999999765
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
..+.. .+ +.+.++.++++.+||++..++.+++ |||||||||
T Consensus 98 ~~~~~-----~~-----------------------------~~~~~~~~~l~~vgL~~~~~~~p~~-----LSGGq~QRV 138 (363)
T TIGR01186 98 LLGWP-----EQ-----------------------------ERKEKALELLKLVGLEEYEHRYPDE-----LSGGMQQRV 138 (363)
T ss_pred HcCCC-----HH-----------------------------HHHHHHHHHHHhcCCchhhhCChhh-----CCHHHHHHH
Confidence 43210 00 0112357788999998888888876 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+|||||+.+|+||||||||++||+.++.++.+.++++.+..++|+++ ++|...++.+++|+|++|++|+++..|+++++
T Consensus 139 ~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~-vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei 217 (363)
T TIGR01186 139 GLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVF-ITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217 (363)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999987655666665 45667789999999999999999999998876
Q ss_pred H
Q 000853 234 C 234 (1252)
Q Consensus 234 ~ 234 (1252)
.
T Consensus 218 ~ 218 (363)
T TIGR01186 218 L 218 (363)
T ss_pred H
Confidence 4
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=282.55 Aligned_cols=230 Identities=25% Similarity=0.336 Sum_probs=191.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++.+|+++++.. +++||++||++|++||+.+||||||||||||.++|+|......++|+|.++|+++
T Consensus 3 ~L~I~dLhv~v~~------------~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI 70 (251)
T COG0396 3 MLEIKDLHVEVEG------------KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70 (251)
T ss_pred eeEEeeeEEEecC------------chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccc
Confidence 4788999987742 1579999999999999999999999999999999999877778899999999987
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCC
Q 000853 731 VQH----TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGVSGLS 805 (1252)
Q Consensus 731 ~~~----~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~lS 805 (1252)
... ..|.-+..-+|.|.-++..|+.+-|..+...+...+....+..+.+++.++.+++.. ..++.+. .++|
T Consensus 71 ~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFS 146 (251)
T COG0396 71 LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFS 146 (251)
T ss_pred ccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcC
Confidence 542 234557888999999999999999998765533211112345567889999999987 3444432 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHh--cceeeeecCcEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAF--DDLILMKNGGRI 883 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~--d~~~~l~~~G~~ 883 (1252)
||||||.-|+..++.+|++.+||||-||||..+-+.+-+.++++++.|.+++++||.. .+.+.. |++.+|.+ |+|
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~-GrI 223 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYD-GRI 223 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999998899999999973 577777 99999985 999
Q ss_pred EEecCCCCcchhHHHHHhhCC
Q 000853 884 IYSGPLGQHSCKVIDYFESIP 904 (1252)
Q Consensus 884 ~~~g~~~~~~~~~~~~f~~~~ 904 (1252)
+..|.+ ++.++++..+
T Consensus 224 v~sG~~-----el~~~le~~g 239 (251)
T COG0396 224 VKSGDP-----ELAEELEEKG 239 (251)
T ss_pred EecCCH-----HHHHHHHHhc
Confidence 999996 4566666653
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=304.22 Aligned_cols=199 Identities=21% Similarity=0.283 Sum_probs=160.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ..+.+++|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 72 (207)
T cd03369 6 EIEVENLSVRYAP-----------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDI 72 (207)
T ss_pred eEEEEEEEEEeCC-----------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEh
Confidence 4788998887632 12358999999999999999999999999999999999877 4589999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
.. ...++.++|++|++.+++ .|++||+.+.. .... +.+.+.++ + +. .+..||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~---~----~~-----~~~~LS~G 129 (207)
T cd03369 73 STIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR---V----SE-----GGLNLSQG 129 (207)
T ss_pred HHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh---c----cC-----CCCcCCHH
Confidence 32 234567999999997765 59999996421 1111 12333333 2 11 24689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||||++|||+|+.+|++++|||||+|||+.++..+++.|+++. +|+|+|++||+++ .+ ..+|++++|.+ |+++..|
T Consensus 130 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~-~~~d~v~~l~~-g~i~~~g 205 (207)
T cd03369 130 QRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TI-IDYDKILVMDA-GEVKEYD 205 (207)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEecC
Confidence 9999999999999999999999999999999999999999985 4899999999875 34 45899999975 8998887
Q ss_pred CC
Q 000853 888 PL 889 (1252)
Q Consensus 888 ~~ 889 (1252)
++
T Consensus 206 ~~ 207 (207)
T cd03369 206 HP 207 (207)
T ss_pred CC
Confidence 63
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=306.89 Aligned_cols=190 Identities=27% Similarity=0.385 Sum_probs=163.1
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCC----CccccceEEEecccc-ccCCCCCHHHHHHHHHhccC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLD----EFVPQKTSAYISQYD-LHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~----~~~~~~~~~yv~Q~~-~~~~~lTV~e~l~f~~~~~~ 76 (1252)
++|+||||||||||+++|+|++.|+ +|+|.++|.+.+ ....++.+|||.|++ ..+...||.|.+.|+.+..+
T Consensus 33 ~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g 109 (235)
T COG1122 33 VLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLG 109 (235)
T ss_pred EEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcC
Confidence 7899999999999999999999997 899999999865 233467899999986 46778899999999987654
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
... ++ .+.+++++++.+|+.+.++..+-+ |||||||||+||
T Consensus 110 ~~~-----~e-----------------------------~~~rv~~~l~~vgl~~~~~r~p~~-----LSGGqkqRvaIA 150 (235)
T COG1122 110 LPR-----EE-----------------------------IEERVAEALELVGLEELLDRPPFN-----LSGGQKQRVAIA 150 (235)
T ss_pred CCH-----HH-----------------------------HHHHHHHHHHHcCchhhccCCccc-----cCCcceeeHHhh
Confidence 311 01 123568899999999998888765 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
.+|+.+|++|+|||||||||+..+.++++.++++....+.|+|+ ++|....+..++|++++|++|+++.+|++.++.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~-~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~ 227 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIII-VTHDLELVLEYADRVVVLDDGKILADGDPAEIF 227 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEE-EeCcHHHHHhhCCEEEEEECCEEeecCCHHHHh
Confidence 99999999999999999999999999999999998765566655 567788999999999999999999999876664
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=355.85 Aligned_cols=214 Identities=25% Similarity=0.374 Sum_probs=178.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++.. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 330 ~i~~~~v~f~y~~~-----------~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~~i 396 (571)
T TIGR02203 330 DVEFRNVTFRYPGR-----------DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGHDL 396 (571)
T ss_pred eEEEEEEEEEcCCC-----------CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEeH
Confidence 58999999987421 2468999999999999999999999999999999999987 4589999999885
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. ..+++.++|++|++.++ +.|++||+.++. +.+.+ +++++++++.+++.+ ..|+.+|..
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf-~~Ti~~Ni~~~~----~~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~- 466 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLF-NDTIANNIAYGR----TEQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGEN- 466 (571)
T ss_pred HhcCHHHHHhhceEEccCcccc-cccHHHHHhcCC----CCCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCC-
Confidence 43 45678899999999775 569999998652 11222 344677788777653 345667655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
.++||||||||++|||+++++|+|++||||||+||+.+++.+++.|+++.+ ++|+|++||++ +....+|+++++. +
T Consensus 467 g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~-~~tiIiitH~~--~~~~~~D~ii~l~-~ 542 (571)
T TIGR02203 467 GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVIAHRL--STIEKADRIVVMD-D 542 (571)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC-CCEEEEEehhh--HHHHhCCEEEEEe-C
Confidence 368999999999999999999999999999999999999999999999854 79999999986 4578899999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|+++..|+.++
T Consensus 543 g~i~~~g~~~~ 553 (571)
T TIGR02203 543 GRIVERGTHNE 553 (571)
T ss_pred CEEEeeCCHHH
Confidence 89999998643
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=301.01 Aligned_cols=165 Identities=30% Similarity=0.486 Sum_probs=139.5
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNIT 753 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~~t 753 (1252)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q--------- 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLASLSPKELARKIAYVPQ--------- 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCcCCHHHHHHHHhHHHH---------
Confidence 458999999999999999999999999999999999877 458999999987532 123344666666
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000853 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 833 (1252)
Q Consensus 754 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsg 833 (1252)
+++.+++.+..++. +..||||||||++|||+|+.+|++++|||||+|
T Consensus 81 ----------------------------~l~~~gl~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEP~~~ 127 (180)
T cd03214 81 ----------------------------ALELLGLAHLADRP-----FNELSGGERQRVLLARALAQEPPILLLDEPTSH 127 (180)
T ss_pred ----------------------------HHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 56666766554433 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 834 LDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 834 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||+.++..+.+.|++++++ ++|+|++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 128 LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~~~ 180 (180)
T cd03214 128 LDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKD-GRIVAQG 180 (180)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999999776 899999999975 45678999999974 8887654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=319.28 Aligned_cols=212 Identities=22% Similarity=0.291 Sum_probs=165.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. .++.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 19 ~i~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 85 (257)
T cd03288 19 EIKIHDLCVRYEN-----------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGIDI 85 (257)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEEh
Confidence 5889999887632 12468999999999999999999999999999999999876 5689999999876
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccc-------ccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY-------SLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~g~~~ 800 (1252)
.. ..+++.++|++|++.+++ .|++||+.... .... +.+.+.++..++.+..+ +..+ ..
T Consensus 86 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~-~~ 153 (257)
T cd03288 86 SKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTD----DRLWEALEIAQLKNMVKSLPGGLDAVVT-EG 153 (257)
T ss_pred hhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCH----HHHHHHHHHhCcHHHHhhcccccCcEec-cC
Confidence 43 245677999999987765 59999875321 1111 12333444444432221 1121 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++ .+ ..+|++++|. +
T Consensus 154 ~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~-~~~dri~~l~-~ 229 (257)
T cd03288 154 GENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TI-LDADLVLVLS-R 229 (257)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HH-HhCCEEEEEE-C
Confidence 46899999999999999999999999999999999999999999999875 4899999999976 34 4599999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|++++
T Consensus 230 G~i~~~g~~~~ 240 (257)
T cd03288 230 GILVECDTPEN 240 (257)
T ss_pred CEEEEeCCHHH
Confidence 89999998643
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=326.33 Aligned_cols=190 Identities=24% Similarity=0.333 Sum_probs=161.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|+.+|+ +|+|.++|.++.... .++.++|++|+..+++..||+||+.|....
T Consensus 33 i~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~ 109 (343)
T TIGR02314 33 IYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (343)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHH
Confidence 47899999999999999999999987 999999999886543 245799999999999999999999987543
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
.+.. +. +.+.++.++++.+||.+..|..+++ |||||||||+
T Consensus 110 ~~~~------~~----------------------------~~~~~v~e~l~~vgL~~~~~~~~~~-----LSgGqkQRV~ 150 (343)
T TIGR02314 110 DNTP------KD----------------------------EIKRKVTELLALVGLGDKHDSYPSN-----LSGGQKQRVA 150 (343)
T ss_pred cCCC------HH----------------------------HHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHH
Confidence 2110 00 0112357789999999888888766 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
|||||+.+|++|+||||||+||+.++.++.+.|+++.+..+.|++++ +|....+.+.||+|++|++|++++.|+++++
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiili-TH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v 228 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLI-THEMDVVKRICDCVAVISNGELIEQGTVSEI 228 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999987556776665 5566788899999999999999999998776
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=328.81 Aligned_cols=191 Identities=24% Similarity=0.384 Sum_probs=162.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCcee--EEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVS--GEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~--G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
+++|+|||||||||||++|+|+.+|+ + |+|.++|.++....+ ++.++||+|+..+++.+||+||+.|+.+.+..
T Consensus 33 ~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~ 109 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM 109 (362)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC
Confidence 47999999999999999999999987 7 999999998765433 45799999999999999999999998653211
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
. .. +.+.+++++++.+||.+..++.+++ |||||||||+|||
T Consensus 110 ~------~~----------------------------~~~~~v~~~l~~~gL~~~~~~~~~~-----LSgGq~QRvaLAR 150 (362)
T TIGR03258 110 P------KA----------------------------DIAERVADALKLVGLGDAAAHLPAQ-----LSGGMQQRIAIAR 150 (362)
T ss_pred C------HH----------------------------HHHHHHHHHHHhcCCCchhhCChhh-----CCHHHHHHHHHHH
Confidence 0 00 0112357889999999988888866 9999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhc-CCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHIT-DATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~-~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
||+.+|++||||||||+||+.++.++.+.|+++.+.. +.|+++ ++|...++..++|+|++|++|+++..|+++++.
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~-vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILC-VTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999987654 455554 566777899999999999999999999988874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=330.02 Aligned_cols=191 Identities=26% Similarity=0.366 Sum_probs=162.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|+..+|+++||+||+.|+.+.++..
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~- 117 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTP- 117 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCC-
Confidence 47999999999999999999999987 9999999998865433 467999999999999999999999976432110
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
.. +.+.+++++++.+||.+..++.+.+ |||||||||+|||||
T Consensus 118 -----~~----------------------------~~~~~~~~~l~~~~l~~~~~~~p~~-----LSgGq~QRVaLARaL 159 (375)
T PRK09452 118 -----AA----------------------------EITPRVMEALRMVQLEEFAQRKPHQ-----LSGGQQQRVAIARAV 159 (375)
T ss_pred -----HH----------------------------HHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHH
Confidence 00 0012357789999999888888766 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
+.+|++||||||||+||..++.++.+.|+++.+..+.|+|+ ++|...++..++|+|++|++|+++..|+++++.
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~-vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVF-VTHDQEEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999998765666655 556677899999999999999999999988763
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=324.03 Aligned_cols=191 Identities=27% Similarity=0.362 Sum_probs=161.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV--PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+|||+|++.+++.+||+||+.|.++.++..
T Consensus 35 i~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 111 (306)
T PRK13537 35 CFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS 111 (306)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 999999999875432 3467999999999999999999999866543210
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
..+ ...+++++++.+||.+..++.+++ |||||||||+||+|
T Consensus 112 -----~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~a 152 (306)
T PRK13537 112 -----AAA-----------------------------ARALVPPLLEFAKLENKADAKVGE-----LSGGMKRRLTLARA 152 (306)
T ss_pred -----HHH-----------------------------HHHHHHHHHHHcCCchHhcCchhh-----CCHHHHHHHHHHHH
Confidence 000 011346788999999989998876 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|+++|++|+|||||+|||+.++.++++.|+++.+ .|.|++++ +|...++.++||+|++|++|++++.|+++++.+
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~-sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLT-THFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999864 46666665 556678999999999999999999999888754
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=353.41 Aligned_cols=213 Identities=23% Similarity=0.358 Sum_probs=175.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. +++.+|+|+|++++|||+++|+||||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 313 ~I~~~~v~~~y~~-----------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~--p~~G~i~~~g~~~ 379 (569)
T PRK10789 313 ELDVNIRQFTYPQ-----------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD--VSEGDIRFHDIPL 379 (569)
T ss_pred cEEEEEEEEECCC-----------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEH
Confidence 4889999987742 12468999999999999999999999999999999999887 4589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-------GIKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~~~ 800 (1252)
.. ..+++.++|++|++.++. .|++||+.++. ++.++ +.++++++..++. +..++.+|..
T Consensus 380 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~-----~~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~- 448 (569)
T PRK10789 380 TKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGR-----PDATQ----QEIEHVARLASVHDDILRLPQGYDTEVGER- 448 (569)
T ss_pred hhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCC-----CCCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCC-
Confidence 43 356788999999998775 59999997642 12222 3355566666554 3345666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. +++|+|++||+++ ....+|++++|. +
T Consensus 449 g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~-~ 524 (569)
T PRK10789 449 GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQ-H 524 (569)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEe-C
Confidence 46899999999999999999999999999999999999999999999985 5899999999974 457899999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|+.++
T Consensus 525 G~i~~~g~~~~ 535 (569)
T PRK10789 525 GHIAQRGNHDQ 535 (569)
T ss_pred CEEEEecCHHH
Confidence 89999998643
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=315.18 Aligned_cols=216 Identities=22% Similarity=0.333 Sum_probs=188.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.+++++++..++ ...+++|||++|++||+.||+|.||||||||+++|.|.+. |++|+|.+||+++
T Consensus 4 ~l~~~~itK~f~-------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v 68 (501)
T COG3845 4 ALEMRGITKRFP-------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEV 68 (501)
T ss_pred eEEEeccEEEcC-------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEe
Confidence 467777776553 3568999999999999999999999999999999999988 5699999999985
Q ss_pred Cc----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQ----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
.- ...+.-||+|.|+..+.+++||.||+..+..-......+.+...++++++.+..||.-..+.++ ..||-
T Consensus 69 ~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V-----~dLsV 143 (501)
T COG3845 69 RIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV-----ADLSV 143 (501)
T ss_pred ccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee-----ecCCc
Confidence 42 2345578999999999999999999998764322234466777888999999999988777775 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
||||||.|-++|.++|++|||||||+-|-|...+++.++|++++++|+|||++||... |+.+.+|++.+|.+ |+++-.
T Consensus 144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~-Gkvvgt 221 (501)
T COG3845 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRR-GKVVGT 221 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeC-CeEEee
Confidence 9999999999999999999999999999999999999999999999999999999986 78899999999975 888766
Q ss_pred cC
Q 000853 887 GP 888 (1252)
Q Consensus 887 g~ 888 (1252)
-+
T Consensus 222 ~~ 223 (501)
T COG3845 222 VD 223 (501)
T ss_pred ec
Confidence 65
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=346.54 Aligned_cols=208 Identities=16% Similarity=0.223 Sum_probs=172.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~ 67 (490)
T PRK10938 3 SLQISQGTFRLS-------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHI 67 (490)
T ss_pred eEEEEeEEEEcC-------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCccc
Confidence 377888887663 2359999999999999999999999999999999999877 4589999998764
Q ss_pred Cc---ccccceEEEEccCCCCC--------CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000853 731 VQ---HTFARISGYCEQNDIHS--------PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP 799 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~--------~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 799 (1252)
.. ...++.++|++|++... ..+|++|++.+. ...+++++++++.++|.+..+..
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~---- 132 (490)
T PRK10938 68 TRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRR---- 132 (490)
T ss_pred ccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCC----
Confidence 32 22345689999986431 146888876431 12245678999999998776655
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
+.+|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ .+.+.||++++|.
T Consensus 133 -~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~- 209 (490)
T PRK10938 133 -FKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLA- 209 (490)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEE-
Confidence 4689999999999999999999999999999999999999999999999877999999999975 5667889999997
Q ss_pred CcEEEEecCCCC
Q 000853 880 GGRIIYSGPLGQ 891 (1252)
Q Consensus 880 ~G~~~~~g~~~~ 891 (1252)
+|++++.|++++
T Consensus 210 ~G~i~~~~~~~~ 221 (490)
T PRK10938 210 DCTLAETGEREE 221 (490)
T ss_pred CCEEEEeCCHHH
Confidence 589999998643
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=349.68 Aligned_cols=212 Identities=25% Similarity=0.307 Sum_probs=172.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 334 ~i~~~~v~~~y~~------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~ 399 (585)
T TIGR01192 334 AVEFRHITFEFAN------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD--PTVGQILIDGIDI 399 (585)
T ss_pred eEEEEEEEEECCC------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC--CCCCEEEECCEEh
Confidence 5899999987742 1358999999999999999999999999999999999887 4689999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-------GIKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~~~ 800 (1252)
.. ..+++.++|++|++.++. .|++||+.++. ++.+++ .+.++++..++. +..++.+|..
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~-----~~~~~~----~~~~a~~~~~~~~~i~~l~~g~~t~~~~~- 468 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR-----EGATDE----EVYEAAKAAAAHDFILKRSNGYDTLVGER- 468 (585)
T ss_pred hhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC-----CCCCHH----HHHHHHHHhCcHHHHHhccccccchhcCC-
Confidence 43 356788999999987764 69999998742 122222 233444444333 2335555554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++. +++|+|++||+++ ....+|++++|.+
T Consensus 469 ~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~--~~~~~d~i~~l~~- 544 (585)
T TIGR01192 469 GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS--TVRNADLVLFLDQ- 544 (585)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH--HHHcCCEEEEEEC-
Confidence 46899999999999999999999999999999999999999999999885 4899999999974 4577999999975
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|+.++
T Consensus 545 G~i~~~g~~~~ 555 (585)
T TIGR01192 545 GRLIEKGSFQE 555 (585)
T ss_pred CEEEEECCHHH
Confidence 89999998643
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=321.78 Aligned_cols=191 Identities=24% Similarity=0.376 Sum_probs=158.8
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+||+|+|||||||++++|.++.+ . +|+|.+||+++++.. .|+.+|||||+..+| +.||.+||.|+.
T Consensus 381 VaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn------ 449 (591)
T KOG0057|consen 381 VAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGN------ 449 (591)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCC------
Confidence 79999999999999999999998 4 899999999987654 467899999966655 579999999864
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
.....+++.+++|.++.. |. ...|+++++|.||+. ++-|||||||||++|||
T Consensus 450 -~sas~eeV~e~~k~a~~h-----------------------d~---i~~l~~GY~T~VGer-G~~LSGGekQrvslaRa 501 (591)
T KOG0057|consen 450 -PSASDEEVVEACKRAGLH-----------------------DV---ISRLPDGYQTLVGER-GLMLSGGEKQRVSLARA 501 (591)
T ss_pred -CCcCHHHHHHHHHHcCcH-----------------------HH---HHhccccchhhHhhc-ccccccchHHHHHHHHH
Confidence 233445555555544332 11 234899999999982 23379999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
++++|+|++||||||+||++++.++++.+.+. ..++|+|+..|.. .+...||+|++|++|++.+.|+++++..
T Consensus 502 ~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 502 FLKDAPILLLDEATSALDSETEREILDMIMDV--MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HhcCCCeEEecCcccccchhhHHHHHHHHHHh--cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999999999999884 3678888877644 5888999999999999999999999865
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=292.60 Aligned_cols=218 Identities=22% Similarity=0.346 Sum_probs=180.6
Q ss_pred CcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCe
Q 000853 649 PLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 728 (1252)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 728 (1252)
+.-++++|++..+ +++.+|+|+|++|+|||..+|+|||||||||||++++|...+ .+|.+.+.|+
T Consensus 29 ~~li~l~~v~v~r-------------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p--ssg~~~~~G~ 93 (257)
T COG1119 29 EPLIELKNVSVRR-------------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP--SSGDVTLLGR 93 (257)
T ss_pred cceEEecceEEEE-------------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCC--CCCceeeeee
Confidence 3458899988765 357899999999999999999999999999999999998774 4899999998
Q ss_pred eCCc----ccccceEEEEccCC--CCCCCCCHHHHHHHH--HHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000853 729 PKVQ----HTFARISGYCEQND--IHSPNITVEESVIFS--AWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG 800 (1252)
Q Consensus 729 ~~~~----~~~~~~~~~v~q~~--~~~~~~tv~e~l~~~--~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 800 (1252)
...+ .+.|+.||+|.-.. .+.+..+|+|-+.-+ +..-.......++..+++..+++.+|+.+.+++..
T Consensus 94 ~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~---- 169 (257)
T COG1119 94 RFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPF---- 169 (257)
T ss_pred eccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCch----
Confidence 7532 45688999997542 345678888877533 22222221233455677899999999999888764
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCCCHHHHHHhcceeeee
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET--GRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
..||-||||||-|||||+++|++||||||++|||...++.+.+.|.+++.. +.++|+|||+.+ |+-..+++++++.
T Consensus 170 -~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~ 247 (257)
T COG1119 170 -GSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLK 247 (257)
T ss_pred -hhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEee
Confidence 589999999999999999999999999999999999999999999999865 789999999986 7888999999997
Q ss_pred cCcEEEEecC
Q 000853 879 NGGRIIYSGP 888 (1252)
Q Consensus 879 ~~G~~~~~g~ 888 (1252)
+ |++++.|.
T Consensus 248 ~-g~v~~~g~ 256 (257)
T COG1119 248 E-GEVVAQGK 256 (257)
T ss_pred C-Cceeeccc
Confidence 4 89999874
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=294.79 Aligned_cols=202 Identities=28% Similarity=0.408 Sum_probs=171.9
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc--ccccceEEEEc-cCCCCCCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCE-QNDIHSPNIT 753 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~~t 753 (1252)
..+++||||+|++|+++|++|||||||||+||+|+|... |.+|.|.++|.+.-. +.+-+.+++|+ |...+...+-
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 458999999999999999999999999999999999887 569999999986432 34455667765 3344556667
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000853 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 833 (1252)
Q Consensus 754 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsg 833 (1252)
+.|.+.....+. +.+.++-+++.+.+.+.++|++..+.. ++.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~-----vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWP-----VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhh-----hhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 888877665554 455666778889999999998877655 478999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 834 LDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 834 LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
||..++..|.+.|++..+ .+.||+.+||+.+ ++...||++++++. |+++|+|+..
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~-Gqlv~dg~l~ 242 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTLA 242 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeC-CcEeecccHH
Confidence 999999999999999875 4999999999987 79999999999975 9999999974
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=285.25 Aligned_cols=193 Identities=22% Similarity=0.360 Sum_probs=164.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP----QKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
++.++|||||||||.+.++.|+.+|+ +|+|.+||.+++.... +.-+||.||+...|-.+||+|||....+.+.
T Consensus 32 iVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~ 108 (243)
T COG1137 32 IVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIRE 108 (243)
T ss_pred EEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhh
Confidence 47899999999999999999999998 9999999999987654 2348999999999999999999987665432
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
.. .+. .+.+.+.+.+|+.+++.|.++.+-.. ||||||||+.||
T Consensus 109 ~d-----~~~---------------------------~~~~~~l~~LL~ef~i~hlr~~~a~s-----LSGGERRR~EIA 151 (243)
T COG1137 109 KD-----LKK---------------------------AERKEELDALLEEFHITHLRDSKAYS-----LSGGERRRVEIA 151 (243)
T ss_pred cc-----hhH---------------------------HHHHHHHHHHHHHhchHHHhcCcccc-----cccchHHHHHHH
Confidence 10 000 01123457899999999999987655 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|||+.+|+.++||||++|+||.+..+|.+.++++.. .|-.+++ +.|.-.|++..|||.+++++|++..+|+++++.+
T Consensus 152 RaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLI-TDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 152 RALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLI-TDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEE-ccccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999999999999999999999976 4555555 5788889999999999999999999999988753
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=354.70 Aligned_cols=213 Identities=27% Similarity=0.387 Sum_probs=176.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++.. .++.+|+|+|++++|||+++|+|+||||||||+|+|+|..+ +.+|+|.+||.++
T Consensus 337 ~i~~~~v~f~y~~~----------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~--p~~G~I~i~g~~i 404 (576)
T TIGR02204 337 EIEFEQVNFAYPAR----------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD--PQSGRILLDGVDL 404 (576)
T ss_pred eEEEEEEEEECCCC----------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEH
Confidence 58999999987431 12469999999999999999999999999999999999887 4589999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-------KYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~g~~~ 800 (1252)
.. ..+++.++|+||++.++ +.|++||+.++. ++.+ +++++++++..++.+. .++.+|..
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf-~~Ti~~Ni~~~~-----~~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~- 473 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLF-AASVMENIRYGR-----PDAT----DEEVEAAARAAHAHEFISALPEGYDTYLGER- 473 (576)
T ss_pred HhcCHHHHHHhceEEccCCccc-cccHHHHHhcCC-----CCCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCC-
Confidence 43 45677899999998765 569999997641 1222 2346677777776432 34555554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++||||++++|++|+||||||+||+.+++.+++.|+++. +++|+|++||++ +....+|+++++.+
T Consensus 474 g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~--~~~~~~d~vi~l~~- 549 (576)
T TIGR02204 474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRL--ATVLKADRIVVMDQ- 549 (576)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEEC-
Confidence 46899999999999999999999999999999999999999999999985 489999999986 45678999999974
Q ss_pred cEEEEecCCC
Q 000853 881 GRIIYSGPLG 890 (1252)
Q Consensus 881 G~~~~~g~~~ 890 (1252)
|++++.|+.+
T Consensus 550 g~~~~~g~~~ 559 (576)
T TIGR02204 550 GRIVAQGTHA 559 (576)
T ss_pred CEEEeeecHH
Confidence 8999999864
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=297.94 Aligned_cols=191 Identities=19% Similarity=0.266 Sum_probs=156.2
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+++ +||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccC
Confidence 56788877652 233555 999999999999999999999999999999877 45899999998764
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000853 732 QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKR 811 (1252)
Q Consensus 732 ~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqr 811 (1252)
... ++.++|++|++..++..|++||+.+....+. ..+++.++++.+++.+..++. ++.||||||||
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~--------~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~r 131 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIYN--------SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKI 131 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhcc--------cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHH
Confidence 322 3458999999877788999999988653321 134567888999987766554 46899999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcce
Q 000853 812 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL 874 (1252)
Q Consensus 812 v~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~ 874 (1252)
++|||+++.+|++++|||||+|||+.++..+.+.|++..++|+|||++||+++ ....+|.+
T Consensus 132 l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~i~~~~~~ 192 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES--SIKSAQIL 192 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc--ccchhhee
Confidence 99999999999999999999999999999999999877667999999999975 33445543
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=289.00 Aligned_cols=190 Identities=23% Similarity=0.383 Sum_probs=158.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP----QKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||+||||||++|+|..++. +|+|.++|++++...+ +.-++||||....|+.+||+|||..++..+.
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~ 107 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARR 107 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhccc
Confidence 58999999999999999999999986 9999999999987655 3568999999999999999999998764321
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHh-CCcccccccccCCcccccCccccchhHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKIL-GLDICADTIVGDPMRRGVSGGQKKRLTT 155 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~~~~rgLSGGqkqRvsi 155 (1252)
.. ... +...|++.+.+ .|.+.++++-|+ |||||||-++|
T Consensus 108 ~~-~~~----------------------------------~~~~e~v~~lFP~Lker~~~~aG~-----LSGGEQQMLAi 147 (237)
T COG0410 108 DK-EAQ----------------------------------ERDLEEVYELFPRLKERRNQRAGT-----LSGGEQQMLAI 147 (237)
T ss_pred cc-ccc----------------------------------cccHHHHHHHChhHHHHhcCcccC-----CChHHHHHHHH
Confidence 10 000 00023333333 255566777777 99999999999
Q ss_pred HHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 156 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
||||+++|++|+|||||.||-|.-..+|.+.++++.+..+ .+|+.+.|....+++.+||.+||.+|++++.|+.+++.
T Consensus 148 aRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g-~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 148 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGG-MTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred HHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCC-cEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999987555 56666899999999999999999999999999988874
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=288.04 Aligned_cols=157 Identities=25% Similarity=0.419 Sum_probs=135.9
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++++++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~ 66 (163)
T cd03216 2 ELRGITKRFG-------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSF 66 (163)
T ss_pred EEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCc
Confidence 4677777653 2358999999999999999999999999999999999887 458999999987543
Q ss_pred c----cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 733 H----TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 733 ~----~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
. ..++.++|++| |||||
T Consensus 67 ~~~~~~~~~~i~~~~q-----------------------------------------------------------LS~G~ 87 (163)
T cd03216 67 ASPRDARRAGIAMVYQ-----------------------------------------------------------LSVGE 87 (163)
T ss_pred CCHHHHHhcCeEEEEe-----------------------------------------------------------cCHHH
Confidence 1 13445777777 99999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||++|||+|+.+|++++|||||+|||+.+++.+.+.|++++++|.|||++||+++ ++.+.+|++++|.+ |++++
T Consensus 88 ~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~ 162 (163)
T cd03216 88 RQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRD-GRVVG 162 (163)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEe
Confidence 99999999999999999999999999999999999999999877999999999864 46677899999974 88765
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=288.45 Aligned_cols=164 Identities=27% Similarity=0.380 Sum_probs=141.3
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 2 ~~~~~~~~~~~------------~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~---- 63 (166)
T cd03223 2 ELENLSLATPD------------GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG---- 63 (166)
T ss_pred EEEEEEEEcCC------------CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC----
Confidence 46777765521 2458999999999999999999999999999999999877 45899999874
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 000853 733 HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRL 812 (1252)
Q Consensus 733 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv 812 (1252)
+.++|++|++.+ +..|++||+.+. ....||||||||+
T Consensus 64 ----~~i~~~~q~~~~-~~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv 100 (166)
T cd03223 64 ----EDLLFLPQRPYL-PLGTLREQLIYP--------------------------------------WDDVLSGGEQQRL 100 (166)
T ss_pred ----ceEEEECCCCcc-ccccHHHHhhcc--------------------------------------CCCCCCHHHHHHH
Confidence 468999999865 467999998642 0257999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 813 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 813 ~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+|||+|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||+++ ....+|++++|.++|.
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~~ 165 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEGG 165 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCCC
Confidence 9999999999999999999999999999999999986 689999999975 4578999999987763
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=324.42 Aligned_cols=192 Identities=30% Similarity=0.431 Sum_probs=155.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
.++|+|+||||||||+++|+|+.+|+ +|+|.+||.+.++.. +++.++||+|++.+++ .|+||||.++..
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~~---- 420 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLARP---- 420 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccCC----
Confidence 48999999999999999999999987 999999999876654 5688999999877765 699999998632
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
....+++++..+.. .+.+...-+++.||.+|+ +++||||||+|||++||
T Consensus 421 ---~~s~e~i~~al~~a---------------------------~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLAR 469 (559)
T COG4988 421 ---DASDEEIIAALDQA---------------------------GLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALAR 469 (559)
T ss_pred ---cCCHHHHHHHHHHh---------------------------cHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHH
Confidence 11222222221111 122222236788999998 67889999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|++++++++++||||++||.+++..|.+.|.++++ ++|+++..|. .+....+|+|++|++|++++.|+++++.+
T Consensus 470 All~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHr--l~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHR--LEDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcC--hHHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999999999999999999999999975 4777776554 46777899999999999999999988743
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=323.63 Aligned_cols=195 Identities=24% Similarity=0.385 Sum_probs=161.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++||+||+.|+.+......
T Consensus 30 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~ 106 (353)
T PRK10851 30 MVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRE 106 (353)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccccc
Confidence 47999999999999999999999987 9999999998765433 3579999999999999999999999764311000
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
.. ... +.+.+++++++.+||++..++.+.+ |||||||||+|||||
T Consensus 107 ~~-~~~-----------------------------~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgGq~QRvalArAL 151 (353)
T PRK10851 107 RP-NAA-----------------------------AIKAKVTQLLEMVQLAHLADRYPAQ-----LSGGQKQRVALARAL 151 (353)
T ss_pred CC-CHH-----------------------------HHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHH
Confidence 00 000 0112357889999999888888766 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+++ ++|...++..++|+|++|++|++++.|+++++.
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~-vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF-VTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999987655666555 566778999999999999999999999988763
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=326.84 Aligned_cols=191 Identities=23% Similarity=0.351 Sum_probs=161.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+|||||||||||++|+|+.+|+ +|+|.++|++++...+ ++.++||+|+..+|+++||.||+.|+.+.+...
T Consensus 47 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~- 122 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP- 122 (377)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC-
Confidence 47899999999999999999999987 9999999998765433 467999999999999999999999976432110
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
..+ .+.+++++++.+||.+..++.+.+ |||||||||+|||||
T Consensus 123 ----~~~-----------------------------~~~~v~~~l~~l~L~~~~~~~~~~-----LSgGq~QRVaLARAL 164 (377)
T PRK11607 123 ----KAE-----------------------------IASRVNEMLGLVHMQEFAKRKPHQ-----LSGGQRQRVALARSL 164 (377)
T ss_pred ----HHH-----------------------------HHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHH
Confidence 000 112357789999999888887765 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
+.+|++||||||||+||..++.++.+.|+++.+..+.|+++ ++|...++..++|+|++|++|+++..|+++++.
T Consensus 165 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~-vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 165 AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM-VTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999999999999999999999887655666655 456677999999999999999999999988764
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=320.63 Aligned_cols=185 Identities=29% Similarity=0.392 Sum_probs=159.0
Q ss_pred EecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 000853 695 LMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLK 773 (1252)
Q Consensus 695 i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~ 773 (1252)
|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||+||+.|....+. ...+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~---~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRK---VPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcC---CCHH
Confidence 689999999999999999887 458999999988643 2235679999999999999999999999765432 2334
Q ss_pred HHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-
Q 000853 774 TKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET- 852 (1252)
Q Consensus 774 ~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~- 852 (1252)
+.+++++++++.++|.+..++. +.+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRK-----PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 4456789999999998776665 4689999999999999999999999999999999999999999999998765
Q ss_pred CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 853 GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 853 g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
|+|||++||+++ ++...+|++++|. +|+++..|++++
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~-~G~i~~~g~~~~ 187 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMR-KGKIAQIGTPEE 187 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 899999999975 5777899999997 589999998754
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=320.84 Aligned_cols=191 Identities=26% Similarity=0.410 Sum_probs=160.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV--PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+.++.++..
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 97 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLP 97 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 47899999999999999999999987 999999998875421 2456899999999999999999999876543210
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
..+ .+.+++++++.+||.+..++.+++ |||||||||+||+|
T Consensus 98 -----~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~a 138 (302)
T TIGR01188 98 -----KDE-----------------------------AEERAEELLELFELGEAADRPVGT-----YSGGMRRRLDIAAS 138 (302)
T ss_pred -----HHH-----------------------------HHHHHHHHHHHcCChhHhCCchhh-----CCHHHHHHHHHHHH
Confidence 000 012357789999999888888876 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|+++|++|+|||||+|||+.++..+++.|+++.+ .+.|++++ +|...++.+.||+|++|++|++++.|+++++.+
T Consensus 139 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~-sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLT-THYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999999999999999999875 46666665 556678899999999999999999999887754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=292.12 Aligned_cols=204 Identities=24% Similarity=0.366 Sum_probs=167.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccc----eEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQK----TSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~----~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...+.+ -++--+|...+|+++||.||+.-++..+.
T Consensus 32 i~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~ 108 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARL 108 (250)
T ss_pred EEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhh
Confidence 47999999999999999999999998 999999999998776543 35667899999999999999998765331
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
. .. . .... +. ..+ ...+...++.++|+.+||.+.+|+..|+ ||+||||||.||
T Consensus 109 ~---~~---~------~l~~-~~-~~~--------~e~~~~e~A~~~Le~vgL~~~a~~~A~~-----LsyG~qR~LEIA 161 (250)
T COG0411 109 G---LS---G------LLGR-PR-ARK--------EEREARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIA 161 (250)
T ss_pred h---hh---h------hhcc-cc-chh--------hHHHHHHHHHHHHHHcCCchhhcchhhc-----CChhHhHHHHHH
Confidence 1 00 0 0000 00 000 0001123468899999999999999998 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|||+++|++|+||||.+||.+....++.+.++++.+.. ..+++.+.|..+-+..+||||+||+.|+++..|+++++.+
T Consensus 162 rALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~-g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 162 RALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRG-GVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred HHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 99999999999999999999999999999999998644 4555668899999999999999999999999999998753
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=309.26 Aligned_cols=191 Identities=25% Similarity=0.342 Sum_probs=156.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 104 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLRE 104 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhh
Confidence 47999999999999999999999987 999999998875432 245689999999899999999999886432
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
... . ...+ .+.+++++++.+||.+..++.+++ |||||||||+
T Consensus 105 ~~~---~-~~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~ 146 (235)
T cd03261 105 HTR---L-SEEE-----------------------------IREIVLEKLEAVGLRGAEDLYPAE-----LSGGMKKRVA 146 (235)
T ss_pred ccC---C-CHHH-----------------------------HHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHH
Confidence 100 0 0000 012346788899998877888766 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
||+||+.+|+||+|||||+|||+.++..+.+.|+++++..+.+++++. |...++..+||+|++|++|++++.|+++++
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vs-H~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVT-HDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe-cCHHHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999999999998764466766655 555678889999999999999999987654
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=346.71 Aligned_cols=206 Identities=25% Similarity=0.400 Sum_probs=183.2
Q ss_pred cccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc----ccccceEEEEccCCCCCCCCCH
Q 000853 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ----HTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 679 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
+++++|+.|++||+.|++|+|||||||++|+|+|..+ +++|++.++|.++.. .+.++.+|||||+|.+.+.+|.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 9999999999999999999999999999999999887 569999999988653 2367889999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000853 755 EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgL 834 (1252)
||++.+.+++|+-+ .++.++.++..++.++|.+..++.+ +.+|||+|||+++|.|++.+|++++|||||+|+
T Consensus 658 rEhL~~~arlrG~~---~~di~~~v~~ll~~~~L~~~~~~~~-----~~ySgG~kRkLs~aialig~p~vi~LDEPstGm 729 (885)
T KOG0059|consen 658 REHLEFYARLRGLP---RSDIGSAIEKLLRLVGLGPYANKQV-----RTYSGGNKRRLSFAIALIGDPSVILLDEPSTGL 729 (885)
T ss_pred HHHHHHHHHHcCCC---hhHHHHHHHHHHHHcCChhhhccch-----hhCCCcchhhHHHHHHHhcCCCEEEecCCCCCC
Confidence 99999999998643 3445566999999999999998874 589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCcchhHHHHH
Q 000853 835 DARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900 (1252)
Q Consensus 835 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f 900 (1252)
||.+++.++++++++.++|+.||+|||.++ |....|||+.+|.+ |++..-|++ ++++..|
T Consensus 730 DP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~-G~l~ciGs~----q~LKsrf 789 (885)
T KOG0059|consen 730 DPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVI-GQLRCIGSP----QELKSRY 789 (885)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeec-CeeEEecCh----HHHHhhc
Confidence 999999999999999988889999999764 56678999999985 899999997 3444444
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=303.78 Aligned_cols=200 Identities=22% Similarity=0.255 Sum_probs=160.9
Q ss_pred cccceeEEEe-----CCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCC
Q 000853 679 LLSDITGTFR-----PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNIT 753 (1252)
Q Consensus 679 ~l~~vs~~i~-----~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~t 753 (1252)
.++|++++++ +||+++|+||||||||||+++|+|..+ +.+|+|.++|. .++|++|+....+..|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc---------eEEEecccccCCCCCC
Confidence 5667777775 799999999999999999999999877 45899999984 4799999987777899
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000853 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 833 (1252)
Q Consensus 754 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsg 833 (1252)
|+|++.+...... . ..+...++++.+++.+..++. +..|||||||||+||++|+.+|++++|||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDRE-----VPELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976432111 0 112357788999998766554 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEE--EecCCCCcchhHHHHHhhC
Q 000853 834 LDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRII--YSGPLGQHSCKVIDYFESI 903 (1252)
Q Consensus 834 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~--~~g~~~~~~~~~~~~f~~~ 903 (1252)
||+.++..+.+.|++++++ |+|||++||+++ .+...+|++++|.. +..+ ..+++.+..+.+..|++..
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEG-EPSVNGVANPPQSLRSGMNRFLKNL 216 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcC-CCeeEEEeCCchHHHHHHHHHHHHC
Confidence 9999999999999999754 899999999864 45567899999853 3333 4455555555677787765
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=294.18 Aligned_cols=185 Identities=25% Similarity=0.426 Sum_probs=161.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-------ccceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV-------PQKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~-------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+|||-|+||||||||+|+|+|+..|+ +|.|.+||..+.+.. .++.+|||+|+--+||++||+-||.|+..
T Consensus 26 vTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~ 102 (352)
T COG4148 26 ITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMW 102 (352)
T ss_pred eEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhc
Confidence 58999999999999999999999998 999999998764321 25789999999999999999999999853
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
.. . ....|.+.+.||+.|..+...+. |||||||||
T Consensus 103 ~~----~------------------------------------~~~fd~iv~lLGI~hLL~R~P~~-----LSGGEkQRV 137 (352)
T COG4148 103 KS----M------------------------------------RAQFDQLVALLGIEHLLDRYPGT-----LSGGEKQRV 137 (352)
T ss_pred cc----c------------------------------------hHhHHHHHHHhCcHHHHhhCCCc-----cCcchhhHH
Confidence 11 0 01136788999999999888776 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+|+|||++.|++|+||||.+.||-.-..+++-.|++++++.+.. |+-+.|-..|+.+++|+|++|++|++...|+.+++
T Consensus 138 AIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IP-IlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v 216 (352)
T COG4148 138 AIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIP-ILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEV 216 (352)
T ss_pred HHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCC-EEEEecCHHHHHhhhheEEEecCCeEEecCcHHHH
Confidence 99999999999999999999999999999999999998876544 45567788899999999999999999999998776
Q ss_pred H
Q 000853 234 C 234 (1252)
Q Consensus 234 ~ 234 (1252)
.
T Consensus 217 ~ 217 (352)
T COG4148 217 W 217 (352)
T ss_pred h
Confidence 3
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=346.66 Aligned_cols=200 Identities=28% Similarity=0.454 Sum_probs=167.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. +++++|+|+|++++|||+++|+||||||||||+|+|+|..+ +.+|+|.+||.++
T Consensus 320 ~i~~~~v~f~y~~-----------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~I~~~g~~i 386 (529)
T TIGR02857 320 SLEFSGLSVAYPG-----------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD--PTEGSIAVNGVPL 386 (529)
T ss_pred eEEEEEEEEECCC-----------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeh
Confidence 5899999998742 12468999999999999999999999999999999999887 4589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-------KYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~g~~~ 800 (1252)
.. ..+++.++||+|++.+++ .|++||+.++. ++.+ ++.++++++..++.+. .|+.+|..
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~- 455 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR-----PDAS----DAEIRRALERAGLDEFVAALPQGLDTLIGEG- 455 (529)
T ss_pred hhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccC-----CCCC----HHHHHHHHHHcCcHHHHHhCcccccchhccc-
Confidence 43 457888999999998765 69999998752 1222 2346677777776543 46666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeee
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILM 877 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 877 (1252)
..+||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|++||++ +....+|++++|
T Consensus 456 g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~--~~~~~~d~i~~l 529 (529)
T TIGR02857 456 GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRL--ALAERADRIVVL 529 (529)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCH--HHHHhCCEEEeC
Confidence 46899999999999999999999999999999999999999999999985 489999999986 456789999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=325.53 Aligned_cols=191 Identities=22% Similarity=0.381 Sum_probs=160.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||+||+.|+.+.++..
T Consensus 31 ~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~- 106 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK- 106 (369)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCC-
Confidence 47999999999999999999999987 9999999998764332 456999999999999999999999876432110
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
..+ .+.+++++++.+||.+..++.+++ |||||||||+|||||
T Consensus 107 ----~~~-----------------------------~~~~~~~~l~~lgL~~~~~~~~~~-----LSgGq~QRvaLAraL 148 (369)
T PRK11000 107 ----KEE-----------------------------INQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTL 148 (369)
T ss_pred ----HHH-----------------------------HHHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHH
Confidence 000 012357789999999888888766 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
+.+|++|||||||+|||+.++..+.+.|+++.+..+.|+|++. |...++..+||+|++|++|+++..|+++++.
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vT-Hd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT-HDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999998765566666654 5566889999999999999999999987763
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=299.24 Aligned_cols=177 Identities=24% Similarity=0.389 Sum_probs=140.9
Q ss_pred ccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHH
Q 000853 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEES 757 (1252)
Q Consensus 678 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~ 757 (1252)
.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++| .++|++|++.++ ..|++||
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--~~~G~i~~~g----------~i~~~~q~~~l~-~~t~~en 85 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPG----------SIAYVSQEPWIQ-NGTIREN 85 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCCeEEEcC----------EEEEEecCchhc-cCcHHHH
Confidence 59999999999999999999999999999999999877 4689999998 479999999876 5799999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccc-------ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000853 758 VIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY-------SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 830 (1252)
Q Consensus 758 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEP 830 (1252)
+.+... ... +...+.++.+++.+..+ +... ....+||+|||||++|||+|+.+|++++||||
T Consensus 86 l~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 86 ILFGKP------FDE----ERYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred hccCCC------cCH----HHHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 987421 111 11233344444332211 1122 22568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 831 TSGLDARAAAIVMR-AVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 831 TsgLD~~~~~~i~~-~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
|+|||+.+++.+.+ +++++.++|+|||++||+++ .+. .+|++++|.+ |
T Consensus 155 ~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~-~~d~i~~l~~-G 203 (204)
T cd03250 155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLP-HADQIVVLDN-G 203 (204)
T ss_pred cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHh-hCCEEEEEeC-C
Confidence 99999999999988 56766666899999999975 344 4999999975 5
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=306.08 Aligned_cols=198 Identities=21% Similarity=0.344 Sum_probs=155.8
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++++|+++. .+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 38 ~~l~i~nls~~---------------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--p~~G~I~i~g-- 98 (282)
T cd03291 38 NNLFFSNLCLV---------------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--PSEGKIKHSG-- 98 (282)
T ss_pred CeEEEEEEEEe---------------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC--
Confidence 45889998863 1358999999999999999999999999999999999887 4589999998
Q ss_pred CCcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCCCC
Q 000853 730 KVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIK-------YSLVGLPGVS 802 (1252)
Q Consensus 730 ~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~g~~~~~ 802 (1252)
.++|++|++.+++ .|++||+.+.... .. ..+.+.++.+++.+.. ++.++. .+.
T Consensus 99 --------~i~yv~q~~~l~~-~tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~~~ 158 (282)
T cd03291 99 --------RISFSSQFSWIMP-GTIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGE-GGI 158 (282)
T ss_pred --------EEEEEeCcccccc-cCHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecC-CCC
Confidence 3799999987766 4999999864211 11 1123334444443221 112221 246
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV-KNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.+ +++. ++.|||++||+++ . ...+|++++|. +|
T Consensus 159 ~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~-~~~~d~i~~l~-~G 234 (282)
T cd03291 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-H-LKKADKILILH-EG 234 (282)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-H-HHhCCEEEEEE-CC
Confidence 89999999999999999999999999999999999999999865 5554 4799999999975 3 46799999997 58
Q ss_pred EEEEecCCC
Q 000853 882 RIIYSGPLG 890 (1252)
Q Consensus 882 ~~~~~g~~~ 890 (1252)
++++.|++.
T Consensus 235 ~i~~~g~~~ 243 (282)
T cd03291 235 SSYFYGTFS 243 (282)
T ss_pred EEEEECCHH
Confidence 999999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=289.74 Aligned_cols=151 Identities=32% Similarity=0.526 Sum_probs=134.1
Q ss_pred ccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCCH
Q 000853 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 678 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .|+
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~ 92 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTI 92 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chH
Confidence 68999999999999999999999999999999999877 458999999987542 234567899999986655 588
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000853 755 EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgL 834 (1252)
.||+ ||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~e~l---------------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gL 127 (171)
T cd03228 93 RENI---------------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSAL 127 (171)
T ss_pred HHHh---------------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCC
Confidence 8876 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 835 DARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 835 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
|+.++..+.+.|+++.+ ++|||++||+++ ++. .+|++++|.+
T Consensus 128 D~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~~~~l~~ 169 (171)
T cd03228 128 DPETEALILEALRALAK-GKTVIVIAHRLS-TIR-DADRIIVLDD 169 (171)
T ss_pred CHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHH-hCCEEEEEcC
Confidence 99999999999999864 799999999975 344 4999999975
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=287.70 Aligned_cols=189 Identities=24% Similarity=0.299 Sum_probs=156.8
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEecccc--ccCCCCCHHHHHHHHHhcc
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV----PQKTSAYISQYD--LHIAEMTVRETIDFSARCQ 75 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~----~~~~~~yv~Q~~--~~~~~lTV~e~l~f~~~~~ 75 (1252)
.+|+|+||||||||.++|+|..+|+ +|+|.++|.+..... ..+.+-+|+||+ .+-|..||++.|.=..+..
T Consensus 36 lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~ 112 (252)
T COG1124 36 LGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH 112 (252)
T ss_pred EEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC
Confidence 5899999999999999999999997 999999998765532 346788999987 4788899999997544321
Q ss_pred CCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCccc-ccccccCCcccccCccccchhH
Q 000853 76 GTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDIC-ADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
+.. + ...++.++++.+||++. .+...-+ ||||||||++
T Consensus 113 ~~~----------------------~--------------~~~~i~~~L~~VgL~~~~l~R~P~e-----LSGGQ~QRia 151 (252)
T COG1124 113 GLS----------------------K--------------SQQRIAELLDQVGLPPSFLDRRPHE-----LSGGQRQRIA 151 (252)
T ss_pred Ccc----------------------H--------------HHHHHHHHHHHcCCCHHHHhcCchh-----cChhHHHHHH
Confidence 110 0 01125778999999875 4555544 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|||||+.+|++|+||||||+||+..+.+|++.|.++.+..+-|. +.+.|...-+..+||||+||++|++++.++.+++.
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~-l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTY-LFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceE-EEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 99999999999999999999999999999999999988765554 55678888999999999999999999999988875
Q ss_pred H
Q 000853 235 K 235 (1252)
Q Consensus 235 ~ 235 (1252)
.
T Consensus 231 ~ 231 (252)
T COG1124 231 S 231 (252)
T ss_pred c
Confidence 3
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=299.69 Aligned_cols=187 Identities=27% Similarity=0.357 Sum_probs=148.2
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-------ccccceEEEEccCCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-------HTFARISGYCEQNDIHS 749 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~ 749 (1252)
+.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 469999999999999999999999999999999999876 458999999986532 12346789999998776
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccc-------ccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000853 750 PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY-------SLVGLPGVSGLSTEQRKRLTIAVELVANP 822 (1252)
Q Consensus 750 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~g~~~~~~lSgGqrqrv~ia~al~~~p 822 (1252)
..|++||+.+... ... +...++++.+++.+..+ +..+ ..+..||||||||++|||+|+.+|
T Consensus 92 -~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 92 -NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIG-ERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred -cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCcc-cCCCcCCHHHHHHHHHHHHHhhCC
Confidence 6799999976421 111 12345556666543321 1111 235789999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHH--HHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 823 SIIFMDEPTSGLDARAAAIVMR--AVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 823 ~illlDEPTsgLD~~~~~~i~~--~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
++|||||||+|||+.++..+++ .++.+.++|.|+|++||+++ .+ ..+|++++|.+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~ 216 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKD 216 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecC
Confidence 9999999999999999999998 66666666899999999975 34 57999988864
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=319.01 Aligned_cols=191 Identities=26% Similarity=0.356 Sum_probs=160.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV--PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++||+|++.+++.+||+||+.|.....+..
T Consensus 69 i~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 145 (340)
T PRK13536 69 CFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS 145 (340)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 999999999875432 3467999999999999999999999765433110
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
..+ .+.+++++++.+||++..++.+++ |||||||||+||+|
T Consensus 146 -----~~~-----------------------------~~~~~~~ll~~~~L~~~~~~~~~~-----LS~G~kqrv~lA~a 186 (340)
T PRK13536 146 -----TRE-----------------------------IEAVIPSLLEFARLESKADARVSD-----LSGGMKRRLTLARA 186 (340)
T ss_pred -----HHH-----------------------------HHHHHHHHHHHcCCchhhCCChhh-----CCHHHHHHHHHHHH
Confidence 000 011245678889999989999876 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|+++|++|||||||+|||+.++.++++.|+++.. .+.|++++ +|...++.++||+|++|++|++++.|+.+++.+
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilis-SH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLT-THFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999875 46666665 566779999999999999999999999888754
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=350.02 Aligned_cols=192 Identities=28% Similarity=0.392 Sum_probs=156.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
.++|+||||||||||+++|+|++ |+ +|+|.+||.++.+... ++.++||+|++.+|. .|++|||.++..
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~~---- 448 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGNP---- 448 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCCC----
Confidence 37999999999999999999999 76 8999999998876543 568999999777665 699999998521
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
+.+.+++.+++..++.++. + -.||++.||.||+. +..||||||||++|||
T Consensus 449 ---------------------~~~~eei~~al~~a~l~~~------i--~~lp~G~dT~vge~-G~~LSGGQrQRialAR 498 (588)
T PRK11174 449 ---------------------DASDEQLQQALENAWVSEF------L--PLLPQGLDTPIGDQ-AAGLSVGQAQRLALAR 498 (588)
T ss_pred ---------------------CCCHHHHHHHHHHhCHHHH------H--HhcccccccccccC-CCCCCHHHHHHHHHHH
Confidence 1112233333333333221 1 23889999999984 5669999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|++++|+||+||||||+||+.++..|.+.|+++. .++|+|+..|++ +..+.||+|++|++|++++.|+++++.+
T Consensus 499 All~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 499 ALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 9999999999999999999999999999998874 467888777766 5678899999999999999999998854
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=296.52 Aligned_cols=192 Identities=23% Similarity=0.338 Sum_probs=169.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-------QKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+..|||-||||||||+++|.++++|+ +|+|.++|.++..... ++.++.|+|...++|+.||.||..|+.+
T Consensus 56 IfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe 132 (386)
T COG4175 56 IFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 132 (386)
T ss_pred EEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee
Confidence 47899999999999999999999997 9999999998765442 4678999999999999999999999988
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
+++.... +.+.++.+.|+..||....+..+.+ ||||+||||
T Consensus 133 v~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~yp~e-----LSGGMqQRV 173 (386)
T COG4175 133 VQGVPKA----------------------------------EREERALEALELVGLEGYADKYPNE-----LSGGMQQRV 173 (386)
T ss_pred ecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhcCccc-----ccchHHHHH
Confidence 7754310 1123457789999999999999877 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
.|||||..+|+||++|||+|+|||--+.+.++-|.++.+..++|++ .++|..+|.+++.|||.+|++|+++..|+++|+
T Consensus 174 GLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIv-FitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eI 252 (386)
T COG4175 174 GLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIV-FITHDLDEALRIGDRIAIMKDGEIVQVGTPEEI 252 (386)
T ss_pred HHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEE-EEecCHHHHHhccceEEEecCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999988877666654 577899999999999999999999999999998
Q ss_pred HH
Q 000853 234 CK 235 (1252)
Q Consensus 234 ~~ 235 (1252)
..
T Consensus 253 l~ 254 (386)
T COG4175 253 LL 254 (386)
T ss_pred Hc
Confidence 64
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=273.39 Aligned_cols=218 Identities=25% Similarity=0.360 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECC-ee
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG-YP 729 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g-~~ 729 (1252)
.++.+|++++.+ ...+|+|+||++.+||+-+|+|||||||||++++|+|... +.+|+++++| .+
T Consensus 5 iL~~~~vsVsF~-------------GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr--p~~G~v~f~g~~d 69 (249)
T COG4674 5 ILYLDGVSVSFG-------------GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR--PQEGEVLFDGDTD 69 (249)
T ss_pred eEEEeceEEEEc-------------ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC--CCcceEEEcCchh
Confidence 466677766553 3568999999999999999999999999999999999876 4589999999 56
Q ss_pred CCcc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCC-----CCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000853 730 KVQH---T-FARISGYCEQNDIHSPNITVEESVIFSAWLRLSP-----EIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG 800 (1252)
Q Consensus 730 ~~~~---~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 800 (1252)
+... . .+.-||--+|.|..|.++||+|||..+......- .....+.+++++++|+..||.+.++...
T Consensus 70 l~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A---- 145 (249)
T COG4674 70 LTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLA---- 145 (249)
T ss_pred hccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhh----
Confidence 5432 1 3445788899999999999999999875322110 0011233467999999999999988764
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..||.||||++.|++-++.+|++|+||||++|+-.......-++|++++. +++|+++-||+.. +-+.++++.+|.+
T Consensus 146 -~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~F-vr~~A~~VTVlh~- 221 (249)
T COG4674 146 -ALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGF-VREIADKVTVLHE- 221 (249)
T ss_pred -hhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHH-HHHhhheeEEEec-
Confidence 47999999999999999999999999999999999999999999999986 7999999999763 6678899999985
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|.+..+|+.++
T Consensus 222 G~VL~EGsld~ 232 (249)
T COG4674 222 GSVLAEGSLDE 232 (249)
T ss_pred cceeecccHHH
Confidence 89999999754
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=296.90 Aligned_cols=187 Identities=21% Similarity=0.198 Sum_probs=150.5
Q ss_pred cccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEE-ECCeeCCcccccceEEEEccCCCCCCCCCHHHH
Q 000853 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR-IGGYPKVQHTFARISGYCEQNDIHSPNITVEES 757 (1252)
Q Consensus 679 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~ 757 (1252)
+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|. ++|... .+.+++.+++.+|++||
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDAL----------PLGANSFILPGLTGEEN 69 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCcee----------ccccccccCCcCcHHHH
Confidence 6899999999999999999999999999999999876 4589997 777532 12345567789999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 000853 758 VIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837 (1252)
Q Consensus 758 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~ 837 (1252)
+.+....+. ...++. .+.+.+.+++.+..++. ++.||||||||++||++|+.+|++++|||||+++|+.
T Consensus 70 l~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~-----~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDR-----VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhch-----HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998765432 222222 22344556776665554 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 838 AAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 838 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
++..+.+.|.+..+ ++|+|++||+++ ++...+|++++|. +|++++.|+.++
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~~ 189 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLL-HGKITMCEDLAQ 189 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEE-CCeEEEeCCHHH
Confidence 99999998866443 578999999975 4666899999997 589999999743
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=318.73 Aligned_cols=191 Identities=24% Similarity=0.337 Sum_probs=159.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc------cceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP------QKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.+....
T Consensus 33 i~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~ 109 (343)
T PRK11153 33 IFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLEL 109 (343)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999987 9999999998764321 35699999999999999999999987543
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
.+.. . .+ .+.+++++++.+||++..++.+++ |||||||||+
T Consensus 110 ~~~~----~-~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qRv~ 150 (343)
T PRK11153 110 AGTP----K-AE-----------------------------IKARVTELLELVGLSDKADRYPAQ-----LSGGQKQRVA 150 (343)
T ss_pred cCCC----H-HH-----------------------------HHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHH
Confidence 2110 0 00 012346788999999888887766 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|||||+.+|+||||||||+|||+.++..+.+.|+++.+..+.|++++. |...++.++||+|++|++|++++.|+.+++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvt-H~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLIT-HEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998765567766655 5556888899999999999999999887763
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=299.84 Aligned_cols=185 Identities=27% Similarity=0.400 Sum_probs=151.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV-PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-- 102 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGV-- 102 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCC--
Confidence 47899999999999999999999887 999999998875432 245689999998888899999999886432110
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
.. .+ .+.+++++++.+||.+..++.+++ |||||||||+|||||
T Consensus 103 --~~-~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~la~al 145 (213)
T cd03259 103 --PK-AE-----------------------------IRARVRELLELVGLEGLLNRYPHE-----LSGGQQQRVALARAL 145 (213)
T ss_pred --CH-HH-----------------------------HHHHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHHHHHH
Confidence 00 00 011246788899998877887766 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
+.+|++++|||||+|||+.++.++.+.|+++++..+.+++++ +|...++.+.||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYV-THDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE-ecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999876446676665 45556788899999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=269.01 Aligned_cols=191 Identities=23% Similarity=0.417 Sum_probs=164.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
.++++||||||||||||+++|+.+|. .|+|.+||.+++. +....|.|.|++.++|.+||.||+.|+.++++..+.
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~g--PgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~ 107 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEG--PGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKA 107 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccC--CCccceeEeccCccchhhHHHHHHHHHHHhcCCCHH
Confidence 36899999999999999999999997 9999999998864 344569999999999999999999999988764311
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
. ....+.+.+...||.+..+..|=+ |||||||||.|||||.
T Consensus 108 -------~---------------------------R~~~a~q~l~~VgL~~~~~~~i~q-----LSGGmrQRvGiARALa 148 (259)
T COG4525 108 -------Q---------------------------RREIAHQMLALVGLEGAEHKYIWQ-----LSGGMRQRVGIARALA 148 (259)
T ss_pred -------H---------------------------HHHHHHHHHHHhCcccccccceEe-----ecchHHHHHHHHHHhh
Confidence 0 112356788889999888887765 9999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEc--CCcEEEeCCcchHHHH
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMA--EGKIVYHGPRSYICKF 236 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~--~G~i~~~G~~~~~~~~ 236 (1252)
.+|+.|+||||+++||+-+++++++.|-++.+..|+.+++ ++|...|.+-++++++||+ .|+++..=+.+....|
T Consensus 149 ~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~ll-iTH~ieEAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 149 VEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLL-ITHDIEEALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred cCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEE-EeccHHHHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 9999999999999999999999999999988888777655 5678889999999999998 5899988877765554
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=300.89 Aligned_cols=189 Identities=28% Similarity=0.338 Sum_probs=155.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF--VPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP 104 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999887 99999999876431 12356899999988999999999999865432110
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
..+ .+.+++++++.+||++..++.+++ |||||||||+||+|
T Consensus 105 -----~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr~~la~a 145 (220)
T cd03265 105 -----GAE-----------------------------RRERIDELLDFVGLLEAADRLVKT-----YSGGMRRRLEIARS 145 (220)
T ss_pred -----HHH-----------------------------HHHHHHHHHHHcCCHHHhhCChhh-----CCHHHHHHHHHHHH
Confidence 000 012346788999998888888876 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcch
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSY 232 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~ 232 (1252)
++.+|++++|||||+|||+.++..+.+.|+++.+..+.++++ ++|...++...+|++++|++|+++..|++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~-~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILL-TTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 999999999999999999999999999999987644666655 4556668888999999999999999987654
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-32 Score=337.37 Aligned_cols=219 Identities=25% Similarity=0.363 Sum_probs=184.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 4 ~l~~~nl~~~y~~~---------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i 72 (648)
T PRK10535 4 LLELKDIRRSYPSG---------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDV 72 (648)
T ss_pred EEEEeeEEEEeCCC---------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEc
Confidence 47889998876421 012469999999999999999999999999999999999887 4589999999986
Q ss_pred Ccc---c----ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000853 731 VQH---T----FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSG 803 (1252)
Q Consensus 731 ~~~---~----~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 803 (1252)
... + .++.++|++|++.+++.+|+.||+.+...... ...++.++++.++++.++|.+..++. +..
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~lgl~~~~~~~-----~~~ 144 (648)
T PRK10535 73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAG---LERKQRLLRAQELLQRLGLEDRVEYQ-----PSQ 144 (648)
T ss_pred CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhcCC-----ccc
Confidence 432 1 14579999999988889999999988653321 23344556788999999998776655 468
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 804 lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
||||||||++|||+|+++|++|+|||||+|||+.+++.+.+.|+++.++|+|+|++||+++ ..+.+|++++|. +|++
T Consensus 145 LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~-~G~i 221 (648)
T PRK10535 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIR-DGEI 221 (648)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEE-CCEE
Confidence 9999999999999999999999999999999999999999999999877999999999864 456799999997 5999
Q ss_pred EEecCCCC
Q 000853 884 IYSGPLGQ 891 (1252)
Q Consensus 884 ~~~g~~~~ 891 (1252)
++.|++.+
T Consensus 222 ~~~g~~~~ 229 (648)
T PRK10535 222 VRNPPAQE 229 (648)
T ss_pred EeecCccc
Confidence 99999864
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=337.71 Aligned_cols=207 Identities=21% Similarity=0.262 Sum_probs=167.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 322 ~i~~~~v~f~y~~------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~ 387 (547)
T PRK10522 322 TLELRNVTFAYQD------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPV 387 (547)
T ss_pred eEEEEEEEEEeCC------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEC
Confidence 5899999998742 2358999999999999999999999999999999999887 4689999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
.. ..+++.++|++|++.+++ .|++|| . . ...++.+++.++.+++.+..+..-|.....+||||
T Consensus 388 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgG 453 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTDFHLFD-QLLGPE---G------K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKG 453 (547)
T ss_pred CCCCHHHHhhheEEEecChhHHH-Hhhccc---c------C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHH
Confidence 53 356788999999987654 466665 0 1 12234577888998887644321111113589999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
||||++||||++++|++|+||||||+||+.++..+.+.|.+..+ .++|+|++||++ +....+|++++|.+ |++++.
T Consensus 454 q~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~-G~i~e~ 530 (547)
T PRK10522 454 QKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRN-GQLSEL 530 (547)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEEC-CEEEEe
Confidence 99999999999999999999999999999999999999987643 589999999986 45788999999975 788766
Q ss_pred cC
Q 000853 887 GP 888 (1252)
Q Consensus 887 g~ 888 (1252)
..
T Consensus 531 ~~ 532 (547)
T PRK10522 531 TG 532 (547)
T ss_pred cC
Confidence 43
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=319.48 Aligned_cols=191 Identities=22% Similarity=0.321 Sum_probs=159.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-------QKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|+..+++++||+||+.|+..
T Consensus 56 i~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~ 132 (400)
T PRK10070 56 IFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME 132 (400)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999987 9999999998765332 2469999999999999999999998764
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
..+.. . ++ .+.+++++++.+||.+..++.+.+ |||||||||
T Consensus 133 ~~~~~----~-~~-----------------------------~~~~~~e~L~~~gL~~~~~~~~~~-----LSgGq~QRv 173 (400)
T PRK10070 133 LAGIN----A-EE-----------------------------RREKALDALRQVGLENYAHSYPDE-----LSGGMRQRV 173 (400)
T ss_pred hcCCC----H-HH-----------------------------HHHHHHHHHHHcCCChhhhcCccc-----CCHHHHHHH
Confidence 32210 0 00 012346789999998888888766 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+|||||+.+|+||||||||+|||+.++..+.+.|+++.+..++|++++. |...++.+++|+|++|++|++++.|+++++
T Consensus 174 ~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivT-Hd~~~~~~~~Dri~vL~~G~i~~~g~~~~l 252 (400)
T PRK10070 174 GLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS-HDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252 (400)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEE-CCHHHHHHhCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999998765566766654 556688899999999999999999988776
Q ss_pred H
Q 000853 234 C 234 (1252)
Q Consensus 234 ~ 234 (1252)
.
T Consensus 253 ~ 253 (400)
T PRK10070 253 L 253 (400)
T ss_pred H
Confidence 3
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=301.77 Aligned_cols=194 Identities=25% Similarity=0.388 Sum_probs=156.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.++........
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 106 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSE 106 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccc
Confidence 47899999999999999999999886 9999999988754322 3568999999888889999999988653221000
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
+.. .. +.+..++++++.+||.+..++.+++ |||||||||+||+||
T Consensus 107 ~~~-~~-----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al 151 (239)
T cd03296 107 RPP-EA-----------------------------EIRAKVHELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARAL 151 (239)
T ss_pred cCC-HH-----------------------------HHHHHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHHHHHH
Confidence 000 00 0011246788889998777877766 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|+ ..++...+|++++|++|++++.|+++++
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD-QEEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999999876446777666554 5678889999999999999999987654
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=307.12 Aligned_cols=191 Identities=23% Similarity=0.326 Sum_probs=157.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-------QKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++++||+||+.+...
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 128 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 128 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHH
Confidence 47999999999999999999999987 9999999988754321 2468999999989989999999988653
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
..+. . . .+ .+.+++++++.+||.+..++.+++ |||||||||
T Consensus 129 ~~~~--~--~-~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrv 169 (269)
T cd03294 129 VQGV--P--R-AE-----------------------------REERAAEALELVGLEGWEHKYPDE-----LSGGMQQRV 169 (269)
T ss_pred hcCC--C--H-HH-----------------------------HHHHHHHHHHHcCCHhHhhCCccc-----CCHHHHHHH
Confidence 2210 0 0 00 012346788999998888888876 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+||+||+.+|+||||||||+|||+.++..+.+.++++++..+.+++++.| ...++.+.+|++++|++|++++.|+++++
T Consensus 170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH-~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITH-DLDEALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999987655667666554 55578889999999999999999987765
Q ss_pred H
Q 000853 234 C 234 (1252)
Q Consensus 234 ~ 234 (1252)
.
T Consensus 249 ~ 249 (269)
T cd03294 249 L 249 (269)
T ss_pred H
Confidence 3
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=288.43 Aligned_cols=191 Identities=27% Similarity=0.375 Sum_probs=157.9
Q ss_pred EEEEEeEEEEEecCccccccccccc-ccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQK-KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
.++.+|++..++.... +... ...+++||||+|++||++||+|.||||||||-++|.|+.. +++|+|.++|.+
T Consensus 4 ll~v~~l~k~f~~~~~-----~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~ 76 (268)
T COG4608 4 LLEVKNLKKYFPVGKG-----FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKD 76 (268)
T ss_pred eEEEeccEEEEecccc-----cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcc
Confidence 3677888777654321 1111 2579999999999999999999999999999999999987 569999999987
Q ss_pred CCcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 730 KVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 730 ~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
+.... .++..+++.++|+.+||....- ...+++||||||
T Consensus 77 i~~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~----~ryPhelSGGQr 115 (268)
T COG4608 77 ITKLS-------------------------------------KEERRERVLELLEKVGLPEEFL----YRYPHELSGGQR 115 (268)
T ss_pred hhhcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHh----hcCCcccCchhh
Confidence 43211 2345677999999999865321 123689999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
||+.|||||+.+|+++++|||||.||...+.++.++|+++.++ |.|.++++||.+ -+-..+|++.+|.. |++|+.|+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~-G~iVE~g~ 193 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYL-GKIVEIGP 193 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEec-CceeEecC
Confidence 9999999999999999999999999999999999999999865 999999999975 35667899999975 99999999
Q ss_pred CCC
Q 000853 889 LGQ 891 (1252)
Q Consensus 889 ~~~ 891 (1252)
.++
T Consensus 194 ~~~ 196 (268)
T COG4608 194 TEE 196 (268)
T ss_pred HHH
Confidence 743
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=268.81 Aligned_cols=184 Identities=23% Similarity=0.378 Sum_probs=155.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
++-|+||||||||||||+|.+...|+ .|+|.+||++++... .++.+|+|.|+.-+++..||.||+.|..+.
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v 106 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV 106 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhc
Confidence 46799999999999999999999997 999999999986543 267899999999999999999999998876
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
.+...+ +.+.++.++|+..||.+..+...-+ |||||||||+
T Consensus 107 ~G~~~~----------------------------------~i~~rV~~~L~~VgL~~k~~~lP~~-----LSGGEQQRva 147 (223)
T COG2884 107 IGKPPR----------------------------------EIRRRVSEVLDLVGLKHKARALPSQ-----LSGGEQQRVA 147 (223)
T ss_pred cCCCHH----------------------------------HHHHHHHHHHHHhccchhhhcCccc-----cCchHHHHHH
Confidence 543210 1123467899999999988877655 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
||||++.+|++|+-||||-.|||..+.+|++.+.++.+ .|+|+++.. |...-+-..-.|++.|++|+++...
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~AT-Hd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMAT-HDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEe-ccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999999999999999999975 577777664 4454555567799999999998664
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=301.91 Aligned_cols=199 Identities=24% Similarity=0.373 Sum_probs=157.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP----QKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++..... +..++|++|++.+++.+||+||+.+......
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~ 104 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQART 104 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcc
Confidence 47999999999999999999999886 9999999988764332 3458999999999999999999988754221
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
.. . ..+. . ...+. .+...+++++++.+||++..++.+++ |||||||||+||
T Consensus 105 ~~-~------~~~~---~---~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la 155 (236)
T cd03219 105 GS-G------LLLA---R---ARREE-----------REARERAEELLERVGLADLADRPAGE-----LSYGQQRRLEIA 155 (236)
T ss_pred cc-c------cccc---c---ccccH-----------HHHHHHHHHHHHHcCccchhhCChhh-----CCHHHHHHHHHH
Confidence 00 0 0000 0 00000 00112357788999998877887766 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
|||+.+|++++|||||+|||+.++.++.+.|+++++ .+.+++++. |...++...||++++|++|++++.|+++++
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vs-H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVE-HDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-cCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 999999999999999999999999999999999875 566766654 555688889999999999999999987665
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=311.91 Aligned_cols=191 Identities=26% Similarity=0.350 Sum_probs=157.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV--PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+.....+.
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~- 107 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM- 107 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCC-
Confidence 47999999999999999999999987 999999998764321 245799999998889999999999875432210
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
. . .+ .+.+++++++.+||++..++.+++ |||||||||+||+|
T Consensus 108 -~--~-~~-----------------------------~~~~~~~ll~~~~l~~~~~~~~~~-----LSgG~~qrv~la~a 149 (303)
T TIGR01288 108 -S--T-RE-----------------------------IEAVIPSLLEFARLESKADVRVAL-----LSGGMKRRLTLARA 149 (303)
T ss_pred -C--H-HH-----------------------------HHHHHHHHHHHCCChhHhcCchhh-----CCHHHHHHHHHHHH
Confidence 0 0 00 011245678889999888888876 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|+.+|++|||||||+|||+.++.++.+.|+++++ .+.|++++ +|...++.+.||+|++|++|++++.|+++++.+
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLT-THFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999865 46666665 455668889999999999999999999887643
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=297.44 Aligned_cols=185 Identities=26% Similarity=0.375 Sum_probs=152.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++||+|++.+++.+||+||+.+....++..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~-- 104 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVP-- 104 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHcCCC--
Confidence 47899999999999999999999886 9999999988753 2457899999988888899999998865432100
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
. .+ .+..++++++.+||.+..++.+++ ||||||||++||+||+
T Consensus 105 --~-~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~la~al~ 147 (220)
T cd03293 105 --K-AE-----------------------------ARERAEELLELVGLSGFENAYPHQ-----LSGGMRQRVALARALA 147 (220)
T ss_pred --H-HH-----------------------------HHHHHHHHHHHcCChhhhhCCccc-----CCHHHHHHHHHHHHHH
Confidence 0 00 012346788899998877877765 9999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEc--CCcEEEeCCc
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMA--EGKIVYHGPR 230 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~--~G~i~~~G~~ 230 (1252)
.+|+++||||||+|||+.++..+.+.|+++.+..+.+++++.| ...++.+.||++++|+ +|++++.++.
T Consensus 148 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH-~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 148 VDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTH-DIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEec-CHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999886555667666554 4557888999999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-32 Score=316.53 Aligned_cols=185 Identities=26% Similarity=0.421 Sum_probs=157.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-------VPQKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++||+|+..+++++||+||+.|+.+
T Consensus 26 ~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 102 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA 102 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence 47999999999999999999999987 99999999886431 124579999999999999999999988531
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
.. .+.+++++++.+||.+..++.+++ |||||||||
T Consensus 103 ~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qRv 137 (352)
T PRK11144 103 KS----------------------------------------MVAQFDKIVALLGIEPLLDRYPGS-----LSGGEKQRV 137 (352)
T ss_pred hh----------------------------------------hHHHHHHHHHHcCCchhhhCCccc-----CCHHHHHHH
Confidence 00 011246788999998888888766 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+|||||+.+|++|||||||+|||+.++..+.+.|+++.+..+.|++++ +|...++..++|++++|++|+++..|+++++
T Consensus 138 alaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~v-THd~~~~~~~~d~i~~l~~G~i~~~g~~~~i 216 (352)
T PRK11144 138 AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYV-SHSLDEILRLADRVVVLEQGKVKAFGPLEEV 216 (352)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEE-ecCHHHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 999999999999999999999999999999999999876556666655 4556789999999999999999999998877
Q ss_pred H
Q 000853 234 C 234 (1252)
Q Consensus 234 ~ 234 (1252)
.
T Consensus 217 ~ 217 (352)
T PRK11144 217 W 217 (352)
T ss_pred H
Confidence 4
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-32 Score=295.58 Aligned_cols=185 Identities=26% Similarity=0.407 Sum_probs=152.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++..||+||+.+.......
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-- 102 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKV-- 102 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCC--
Confidence 37899999999999999999999886 9999999988754322 35699999998888889999999886532210
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
. ..+ .+.+++++++.+||.+..++.+++ ||||||||++|||||
T Consensus 103 ~---~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr~~laral 145 (213)
T cd03301 103 P---KDE-----------------------------IDERVREVAELLQIEHLLDRKPKQ-----LSGGQRQRVALGRAI 145 (213)
T ss_pred C---HHH-----------------------------HHHHHHHHHHHcCCHHHHhCChhh-----CCHHHHHHHHHHHHH
Confidence 0 000 012346788899998888888766 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
+.+|++++|||||+|||+.++.++.+.|+++++..+.|++++.|+ ..++...+|+|++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~-~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHD-QVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999876556777766554 56788899999999999998876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=6e-32 Score=334.13 Aligned_cols=211 Identities=19% Similarity=0.261 Sum_probs=169.9
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++++|+++.++... ..++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~~~--------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--p~~G~i~~~g~~ 405 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE--------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI--PQEGEILLDGAA 405 (555)
T ss_pred ceEEEEEEEEEeCCCC--------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 3689999999885321 012358999999999999999999999999999999999887 568999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccccc-ccCCCCCCCC
Q 000853 730 KVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSL-VGLPGVSGLS 805 (1252)
Q Consensus 730 ~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~g~~~~~~lS 805 (1252)
+.. ..+++.++|++|++.++. .|+++|. . + +..+++++++++.+++.+..+.. -|.+...+||
T Consensus 406 i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~------~--~----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS 472 (555)
T TIGR01194 406 VSADSRDDYRDLFSAIFADFHLFD-DLIGPDE------G--E----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALS 472 (555)
T ss_pred CCCCCHHHHHhhCcEEccChhhhh-hhhhccc------c--c----chhHHHHHHHHHHcCCchhhcccccccCCcccCC
Confidence 654 356778999999987654 5777773 1 1 12345578899999988765432 2323346899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVK-NVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~-~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
||||||++||||++++|++|+||||||+||+.+++.+.+.+. ++..+++|+|++||+++ ..+.+|++++|.+ |+++
T Consensus 473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~-G~i~ 549 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAA-GCIV 549 (555)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999998664 45556899999999864 5678999999975 8887
Q ss_pred Ee
Q 000853 885 YS 886 (1252)
Q Consensus 885 ~~ 886 (1252)
+.
T Consensus 550 ~~ 551 (555)
T TIGR01194 550 KD 551 (555)
T ss_pred Ee
Confidence 64
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-32 Score=300.29 Aligned_cols=190 Identities=24% Similarity=0.349 Sum_probs=156.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.+....
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 109 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEI 109 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999986 999999999875432 145689999999999999999999886532
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
+.. .. .. ....++++++.+||++..++.+.+ |||||||||+
T Consensus 110 ~~~----~~-~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~ 150 (233)
T cd03258 110 AGV----PK-AE-----------------------------IEERVLELLELVGLEDKADAYPAQ-----LSGGQKQRVG 150 (233)
T ss_pred cCC----CH-HH-----------------------------HHHHHHHHHHHCCChhhhhcChhh-----CCHHHHHHHH
Confidence 210 00 00 011246788899998877777755 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
||+||+.+|++++|||||+|||+.++..+.+.++++++..+.+++++.|+ ..++.+.+|++++|++|++++.|+.+++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE-MEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999876546677666554 5678889999999999999999986654
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-32 Score=307.32 Aligned_cols=191 Identities=26% Similarity=0.403 Sum_probs=154.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-----cccceEEEeccccc-cCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-----VPQKTSAYISQYDL-HIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-----~~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++. .+...||+||+.|+...
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 111 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN 111 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHH
Confidence 47999999999999999999999987 99999999987642 12467899999853 44467999999986532
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc--ccccccccCCcccccCccccch
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD--ICADTIVGDPMRRGVSGGQKKR 152 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~t~vg~~~~rgLSGGqkqR 152 (1252)
.+.. .++ .+.+++++++.+||. +..++.+.+ ||||||||
T Consensus 112 ~~~~-----~~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~~~-----LSgGq~qr 152 (287)
T PRK13637 112 LGLS-----EEE-----------------------------IENRVKRAMNIVGLDYEDYKDKSPFE-----LSGGQKRR 152 (287)
T ss_pred CCCC-----HHH-----------------------------HHHHHHHHHHHcCCCchhhccCCccc-----CCHHHHHH
Confidence 2100 000 012356788999997 556777655 99999999
Q ss_pred hHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcch
Q 000853 153 LTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSY 232 (1252)
Q Consensus 153 vsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~ 232 (1252)
++||+||+.+|++|||||||+|||+.++.++.+.|+++++..+.|++++. |...++...||+|++|++|++++.|+.++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vt-Hd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVS-HSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998765466666654 55667888999999999999999999887
Q ss_pred HH
Q 000853 233 IC 234 (1252)
Q Consensus 233 ~~ 234 (1252)
+.
T Consensus 232 ~~ 233 (287)
T PRK13637 232 VF 233 (287)
T ss_pred HH
Confidence 64
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-32 Score=301.14 Aligned_cols=198 Identities=24% Similarity=0.386 Sum_probs=155.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+....
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 105 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLG 105 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcc
Confidence 47999999999999999999999886 999999998876432 235689999998889999999999875321
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
.. . ..... .+..+ ...+.+++++++.+||.+..++.+++ |||||||||+
T Consensus 106 ~~-~----~~~~~------~~~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~ 154 (241)
T cd03256 106 RR-S----TWRSL------FGLFP---------------KEEKQRALAALERVGLLDKAYQRADQ-----LSGGQQQRVA 154 (241)
T ss_pred cc-h----hhhhh------cccCc---------------HHHHHHHHHHHHHcCChhhhCCCccc-----CCHHHHHHHH
Confidence 00 0 00000 00000 00112346788899998777777655 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
||+||+.+|+||+|||||+|||+.++..+.+.|+++++..+.+++++. |...++...+|++++|++|++++.|+++++
T Consensus 155 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~t-H~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 155 IARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSL-HQVDLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 999999999999999999999999999999999998765566766655 555678889999999999999999987765
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-32 Score=299.03 Aligned_cols=189 Identities=23% Similarity=0.352 Sum_probs=155.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV----PQKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+......
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG 104 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC
Confidence 47899999999999999999999987 999999998865432 12458999999999999999999987643221
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
. . ..+ .+.+++++++.+|+.+..++.+++ |||||||||+||
T Consensus 105 ~--~---~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la 145 (232)
T cd03218 105 L--S---KKE-----------------------------REEKLEELLEEFHITHLRKSKASS-----LSGGERRRVEIA 145 (232)
T ss_pred C--C---HHH-----------------------------HHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHH
Confidence 0 0 000 011346788899998878887766 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.+++++. |...++.+.+|++++|++|++++.|+.+++
T Consensus 146 ~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 146 RALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITD-HNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999999999999999999999999999998875 466666654 455588999999999999999999987654
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-32 Score=297.27 Aligned_cols=180 Identities=22% Similarity=0.376 Sum_probs=147.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+....
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 107 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRI 107 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHh
Confidence 47999999999999999999999886 999999998875422 235689999999899999999999987543
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
.+.. ..+ .+.+++++++.+||++..++.+++ |||||||||+
T Consensus 108 ~~~~-----~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~ 148 (216)
T TIGR00960 108 IGVP-----PRD-----------------------------ANERVSAALEKVGLEGKAHALPMQ-----LSGGEQQRVA 148 (216)
T ss_pred cCCC-----HHH-----------------------------HHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHH
Confidence 2100 000 012346788999998877887765 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcE
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKI 224 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i 224 (1252)
|||||+.+|++|||||||+|||+.++.++.+.|+++.+ .+.+++++ +|...++...||++++|++|++
T Consensus 149 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~v-sH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVA-THDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999998865 46666655 4555678889999999999974
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.8e-33 Score=301.89 Aligned_cols=215 Identities=27% Similarity=0.416 Sum_probs=177.4
Q ss_pred CcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCe
Q 000853 649 PLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 728 (1252)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 728 (1252)
...+.|.++++.++ +.+++|+++||++++|+++|++|+||+||||++++|...+. +.+|.|.+||+
T Consensus 260 ~g~v~F~~V~F~y~------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD--~~sG~I~id~q 325 (497)
T COG5265 260 LGAVAFINVSFAYD------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD--VNSGSITIDGQ 325 (497)
T ss_pred cceEEEEEEEeecc------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC--CcCceEEEcch
Confidence 44689999998875 34689999999999999999999999999999999999887 45899999999
Q ss_pred eCC---cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHcCCcccccccccCCC
Q 000853 729 PKV---QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAE-----FVNEVLQTIELDGIKYSLVGLPG 800 (1252)
Q Consensus 729 ~~~---~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~g~~~ 800 (1252)
++. ....|+.+|.||||..++ +-|...|+.|+. ++.+.+++.+ .+...++ .+.+-.++.+|..+
T Consensus 326 dir~vtq~slR~aIg~VPQDtvLF-NDti~yni~ygr-----~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgerg 397 (497)
T COG5265 326 DIRDVTQQSLRRAIGIVPQDTVLF-NDTIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERG 397 (497)
T ss_pred hHHHhHHHHHHHHhCcCcccceeh-hhhHHHHHhccC-----ccccHHHHHHHHHHhhhhHHHH--hCchhhhcccchhe
Confidence 854 356788999999998775 569999998763 2333333222 1222222 34556778888765
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
. .|||||||||+|||+++.+|+||++||+||.||..++++|+..|++.+ .|+|.+++.|+.+ ....+|.+++|. +
T Consensus 398 l-klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrls--ti~~adeiivl~-~ 472 (497)
T COG5265 398 L-KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLS--TIIDADEIIVLD-N 472 (497)
T ss_pred e-eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhh--hccCCceEEEee-C
Confidence 4 599999999999999999999999999999999999999999999987 4899999999976 456789999997 4
Q ss_pred cEEEEecCCC
Q 000853 881 GRIIYSGPLG 890 (1252)
Q Consensus 881 G~~~~~g~~~ 890 (1252)
|+|++.|+.+
T Consensus 473 g~i~erg~h~ 482 (497)
T COG5265 473 GRIVERGTHE 482 (497)
T ss_pred CEEEecCcHH
Confidence 9999999863
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-32 Score=309.17 Aligned_cols=190 Identities=23% Similarity=0.370 Sum_probs=159.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV--PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++++||+||+.|.+...+..
T Consensus 30 i~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~ 106 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMK 106 (301)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 999999998875421 2457999999999999999999999876543210
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
. ++ .+.+++++++.+||.+..++.+++ |||||||||+||+|
T Consensus 107 ~-----~~-----------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~la~a 147 (301)
T TIGR03522 107 G-----QL-----------------------------LKQRVEEMIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQA 147 (301)
T ss_pred H-----HH-----------------------------HHHHHHHHHHHCCCchHhcCchhh-----CCHHHHHHHHHHHH
Confidence 0 00 011246788999999988888866 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|+++|++|+|||||+|||+.++.++++.++++.. +.|+++ ++|...++.++||+|++|++|++++.|+.+++.+
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii-~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIIL-STHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEE-EcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999853 555555 5566778999999999999999999999888754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-32 Score=364.28 Aligned_cols=213 Identities=24% Similarity=0.377 Sum_probs=171.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEE-CCee
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI-GGYP 729 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~-~g~~ 729 (1252)
.++++||++.|+.. +++.+|+|+||+|++||++||+||||||||||+++|+|.+. +.+|+|.+ ||.+
T Consensus 382 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~i~~g~~ 449 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR----------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD--PTEGDIIINDSHN 449 (1466)
T ss_pred cEEEEEEEEEcCCC----------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc--CCCCeEEEeCCcc
Confidence 58999999987531 12469999999999999999999999999999999999887 56899999 4676
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHc-cC--------CC---------C-------------------
Q 000853 730 KVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWL-RL--------SP---------E------------------- 769 (1252)
Q Consensus 730 ~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l-~~--------~~---------~------------------- 769 (1252)
+.. ..+|+.+|||+|++.+++ .|++||+.++... +. .. .
T Consensus 450 i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 450 LKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred hhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 532 346788999999998876 5999999986310 00 00 0
Q ss_pred -----------CCHHHHHHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000853 770 -----------IDLKTKAEFVNEVLQTIELDGI-------KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 831 (1252)
Q Consensus 770 -----------~~~~~~~~~~~~~l~~~~l~~~-------~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPT 831 (1252)
......++.+.++++.+++.+. .|+.+|.. +..||||||||++|||||+++|+||||||||
T Consensus 529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpT 607 (1466)
T PTZ00265 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEAT 607 (1466)
T ss_pred cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 0001123557778887776543 35666654 4689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 832 SGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 832 sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
|+||+.++..+++.|+++.+ +|+|+|+++|+++ ..+.+|++++|.+
T Consensus 608 SaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls--~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 608 SSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS--TIRYANTIFVLSN 654 (1466)
T ss_pred cccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH--HHHhCCEEEEEeC
Confidence 99999999999999999975 5899999999975 4578999999986
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-32 Score=312.77 Aligned_cols=191 Identities=25% Similarity=0.340 Sum_probs=158.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCc----cCCCccc-------cceEEEeccccccCCCCCHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGY----RLDEFVP-------QKTSAYISQYDLHIAEMTVRETID 69 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~----~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~ 69 (1252)
+++|+||||||||||+++|+|+++|+ +|+|.++|. ++..... ++.++||+|++.+++..||+||+.
T Consensus 52 i~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~ 128 (382)
T TIGR03415 52 ICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVA 128 (382)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHH
Confidence 47999999999999999999999987 999999996 3322211 246999999999999999999999
Q ss_pred HHHhccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccc
Q 000853 70 FSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQ 149 (1252)
Q Consensus 70 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGq 149 (1252)
|+....+... . +.+.+++++++.+||.+..++.+++ |||||
T Consensus 129 ~~~~~~g~~~-----~-----------------------------~~~~~a~e~le~vgL~~~~~~~~~~-----LSgGq 169 (382)
T TIGR03415 129 FGLEMQGMPE-----A-----------------------------ERRKRVDEQLELVGLAQWADKKPGE-----LSGGM 169 (382)
T ss_pred HHHHhcCCCH-----H-----------------------------HHHHHHHHHHHHcCCchhhcCChhh-----CCHHH
Confidence 8764321100 0 0012357789999999888888876 99999
Q ss_pred cchhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCC
Q 000853 150 KKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229 (1252)
Q Consensus 150 kqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~ 229 (1252)
||||+|||||+.+|+||||||||+|||+.++.++.+.|+++.+..+.|++++ +|...++.+++|+|++|++|+++..|+
T Consensus 170 ~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~i-THdl~e~~~l~DrI~vl~~G~iv~~g~ 248 (382)
T TIGR03415 170 QQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFV-SHDLDEALKIGNRIAIMEGGRIIQHGT 248 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999999876556666665 556678899999999999999999999
Q ss_pred cchHH
Q 000853 230 RSYIC 234 (1252)
Q Consensus 230 ~~~~~ 234 (1252)
++++.
T Consensus 249 ~~ei~ 253 (382)
T TIGR03415 249 PEEIV 253 (382)
T ss_pred HHHHh
Confidence 87764
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-32 Score=300.04 Aligned_cols=190 Identities=27% Similarity=0.362 Sum_probs=154.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+.......
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 105 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKW 105 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCC
Confidence 47899999999999999999999886 999999998875432 245689999999899899999999886533210
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcc--cccccccCCcccccCccccchhHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDI--CADTIVGDPMRRGVSGGQKKRLTT 155 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~~t~vg~~~~rgLSGGqkqRvsi 155 (1252)
.. ++ .+..++++++.+||++ ..++.+.+ |||||||||+|
T Consensus 106 ----~~-~~-----------------------------~~~~~~~~l~~l~l~~~~~~~~~~~~-----LS~G~~qrv~l 146 (242)
T cd03295 106 ----PK-EK-----------------------------IRERADELLALVGLDPAEFADRYPHE-----LSGGQQQRVGV 146 (242)
T ss_pred ----CH-HH-----------------------------HHHHHHHHHHHcCCCcHHHHhcChhh-----CCHHHHHHHHH
Confidence 00 00 0122467888899985 55666655 99999999999
Q ss_pred HHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 156 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
||||+.+|++++|||||+|||+.++..+.+.|+++++..+.+++++.|+ ..++...+|+|++|++|++++.|+++++
T Consensus 147 aral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 147 ARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD-IDEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC-HHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999876446676665554 5578889999999999999999987654
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-32 Score=311.47 Aligned_cols=188 Identities=27% Similarity=0.354 Sum_probs=157.2
Q ss_pred EeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCCCCc
Q 000853 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHRAD 82 (1252)
Q Consensus 4 i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~ 82 (1252)
|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|+..+++.+||+||+.|+.+.+...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~---- 73 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVP---- 73 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCC----
Confidence 68999999999999999999987 9999999998754332 456999999999999999999999975432100
Q ss_pred hhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHhcC
Q 000853 83 SMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGP 162 (1252)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~~~ 162 (1252)
..+ .+.+++++++.+||.+..++.+.+ |||||||||+|||||+.+
T Consensus 74 -~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qRvalaraL~~~ 118 (325)
T TIGR01187 74 -RAE-----------------------------IKPRVLEALRLVQLEEFADRKPHQ-----LSGGQQQRVALARALVFK 118 (325)
T ss_pred -HHH-----------------------------HHHHHHHHHHHcCCcchhcCChhh-----CCHHHHHHHHHHHHHHhC
Confidence 000 012346788999998888887765 999999999999999999
Q ss_pred CcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 163 TRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 163 p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|++|||||||+|||+.++..+.+.|+++.+..+.|+|++. |...++..+||+|++|++|+++..|+++++.
T Consensus 119 p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivT-Hd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 119 PKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVT-HDQEEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999998765567776654 5566889999999999999999999887763
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-32 Score=294.30 Aligned_cols=183 Identities=25% Similarity=0.365 Sum_probs=150.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+||+.+....++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~-- 101 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLK-- 101 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCC--
Confidence 47899999999999999999999886 9999999987754 23457899999998899999999998865432110
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
. .+ .+..++++++.+|+++..++.+++ |||||||||+||+||+
T Consensus 102 --~-~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~ 144 (210)
T cd03269 102 --K-EE-----------------------------ARRRIDEWLERLELSEYANKRVEE-----LSKGNQQKVQFIAAVI 144 (210)
T ss_pred --h-HH-----------------------------HHHHHHHHHHHcCChHHHhCcHhh-----CCHHHHHHHHHHHHHh
Confidence 0 00 012346788899998877877765 9999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
.+|++++|||||+|||+.++.++.+.++++.+ .+.+++++ +|...++.+.+|++++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~-sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILS-THQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEE-CCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998865 45666555 45566788899999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-32 Score=296.71 Aligned_cols=180 Identities=23% Similarity=0.396 Sum_probs=147.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-------ccceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV-------PQKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~-------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 108 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL 108 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHh
Confidence 47999999999999999999999887 999999998875432 13468999999889999999999998754
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
.++.. . .+ .+.+++++++.+||.+..++.+++ |||||||||
T Consensus 109 ~~~~~----~-~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv 149 (218)
T cd03255 109 LAGVP----K-KE-----------------------------RRERAEELLERVGLGDRLNHYPSE-----LSGGQQQRV 149 (218)
T ss_pred hcCCC----H-HH-----------------------------HHHHHHHHHHHcCCchhhhcChhh-----cCHHHHHHH
Confidence 32100 0 00 012346788899998877877765 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcE
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKI 224 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i 224 (1252)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++..+.+++++.|++ .++. .||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999998764467777766655 4555 8999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-32 Score=314.22 Aligned_cols=189 Identities=24% Similarity=0.456 Sum_probs=157.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-------VPQKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.|+..
T Consensus 25 i~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 101 (354)
T TIGR02142 25 VTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMK 101 (354)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhh
Confidence 47999999999999999999999987 99999999887432 124569999999999999999999998653
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
... ..+ .+.+++++++.+||.+..++.+++ |||||||||
T Consensus 102 ~~~-------~~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGqkqRv 140 (354)
T TIGR02142 102 RAR-------PSE-----------------------------RRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRV 140 (354)
T ss_pred ccC-------hhH-----------------------------HHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHH
Confidence 110 000 012346788999999888888766 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+|||||+.+|++|||||||+|||+.++..+.+.|+++.+..+.|++++. |...++..++|+|++|++|+++..|+++++
T Consensus 141 alAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivt-H~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 141 AIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVS-HSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred HHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEe-cCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998765566666654 556688899999999999999999987765
Q ss_pred H
Q 000853 234 C 234 (1252)
Q Consensus 234 ~ 234 (1252)
.
T Consensus 220 ~ 220 (354)
T TIGR02142 220 W 220 (354)
T ss_pred h
Confidence 3
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.1e-32 Score=293.40 Aligned_cols=183 Identities=28% Similarity=0.431 Sum_probs=150.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV--PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+........
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 103 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP 103 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCC
Confidence 47999999999999999999999987 999999998765422 2456899999998999999999998865432100
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
..+ .+..++++++.+||++..++.+++ |||||||||+||||
T Consensus 104 -----~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~a 144 (211)
T cd03264 104 -----SKE-----------------------------VKARVDEVLELVNLGDRAKKKIGS-----LSGGMRRRVGIAQA 144 (211)
T ss_pred -----HHH-----------------------------HHHHHHHHHHHCCCHHHHhCchhh-----CCHHHHHHHHHHHH
Confidence 000 011246788889998877887766 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
|+.+|++++|||||+|||+.++.++.+.|++++. +.|+++ ++|...++.+.+|++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~-vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVIL-STHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEE-EcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999864 455544 556666788899999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.3e-32 Score=292.57 Aligned_cols=180 Identities=26% Similarity=0.385 Sum_probs=149.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-cccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-VPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++... ..++.++||+|++.++++.||+||+.+.......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-- 102 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGI-- 102 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCC--
Confidence 47899999999999999999999886 99999999876432 1245689999998889999999999886532100
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
.+.+++++++.+||.+..++.+++ |||||||||+||+|+
T Consensus 103 ------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al 141 (208)
T cd03268 103 ------------------------------------RKKRIDEVLDVVGLKDSAKKKVKG-----FSLGMKQRLGIALAL 141 (208)
T ss_pred ------------------------------------cHHHHHHHHHHcCCHHHHhhhHhh-----CCHHHHHHHHHHHHH
Confidence 011246678888998877877766 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
+.+|++++|||||+|||+.++..+.+.|+++.+ .+.+++++ +|...++...+|++++|++|++++.|
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~-tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLIS-SHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-cCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999998875 56666665 45566788899999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-31 Score=294.01 Aligned_cols=188 Identities=32% Similarity=0.565 Sum_probs=153.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCC---CCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLS---HSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~---~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
+++|+||||||||||+++|+|.++ |+ +|+|.++|.++.....++.++|++|++.+++.+||+||+.|+......
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~ 111 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLP 111 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcc
Confidence 478999999999999999999998 65 999999998875434456799999999999999999999987543211
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHH-HHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDY-ILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
... .... ....+++ .++.+++.+..++.+++ |||||||||+||
T Consensus 112 ~~~---~~~~----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la 155 (226)
T cd03234 112 RKS---SDAI----------------------------RKKRVEDVLLRDLALTRIGGNLVKG-----ISGGERRRVSIA 155 (226)
T ss_pred ccc---chHH----------------------------HHHHHHHHHHHhhcchhhhcccccC-----cCHHHHHHHHHH
Confidence 100 0000 0011233 77788888777777655 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
|+|+.+|+++||||||+|||+.++..+.+.++++.+ .+.|++++.|++..++.+.||++++|++|++++.|
T Consensus 156 ral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 156 VQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999998865 46788888777767899999999999999998775
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-32 Score=300.80 Aligned_cols=198 Identities=23% Similarity=0.324 Sum_probs=154.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 106 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLG 106 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccc
Confidence 47999999999999999999999886 999999998875422 245689999998889999999999875311
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
... ..... .+..+ .+.+.+++++++.+||.+..++.+.+ |||||||||+
T Consensus 107 ~~~-----~~~~~------~~~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~ 155 (243)
T TIGR02315 107 YKP-----TWRSL------LGRFS---------------EEDKERALSALERVGLADKAYQRADQ-----LSGGQQQRVA 155 (243)
T ss_pred ccc-----chhhh------hcccc---------------HHHHHHHHHHHHHcCcHhhhcCCccc-----CCHHHHHHHH
Confidence 000 00000 00000 00112356788899998777777655 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.+++++. |...++.+.||++++|++|++++.|+++++
T Consensus 156 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~t-H~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINL-HQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe-CCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999999999999999998764466666654 555677889999999999999999987654
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=329.32 Aligned_cols=206 Identities=22% Similarity=0.352 Sum_probs=166.5
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.
T Consensus 2 l~i~~ls~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~--- 63 (530)
T PRK15064 2 LSTANITMQFG-------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE--PSAGNVSLDPN--- 63 (530)
T ss_pred EEEEEEEEEeC-------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC---
Confidence 56788887652 2469999999999999999999999999999999999877 45899999873
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHH-c----------cCCCCC--C----------------HHHHHHHHHHH
Q 000853 732 QHTFARISGYCEQNDIHSPNITVEESVIFSAW-L----------RLSPEI--D----------------LKTKAEFVNEV 782 (1252)
Q Consensus 732 ~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~-l----------~~~~~~--~----------------~~~~~~~~~~~ 782 (1252)
+.+||++|++.+++.+||+|++.++.. . ...... . ..+.++++.++
T Consensus 64 -----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (530)
T PRK15064 64 -----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL 138 (530)
T ss_pred -----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 258999999988889999999987421 0 000000 0 01223567889
Q ss_pred HHHcCCccccc-ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEec
Q 000853 783 LQTIELDGIKY-SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIH 861 (1252)
Q Consensus 783 l~~~~l~~~~~-~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H 861 (1252)
++.+|+.+..+ .. +.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++ .|.|||++||
T Consensus 139 l~~~gl~~~~~~~~-----~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsH 210 (530)
T PRK15064 139 LLGVGIPEEQHYGL-----MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISH 210 (530)
T ss_pred HHhCCCChhHhcCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeC
Confidence 99999975332 22 468999999999999999999999999999999999999999999874 4899999999
Q ss_pred CCCHHHHHHhcceeeeecCcEE-EEecCCC
Q 000853 862 QPSIDIFEAFDDLILMKNGGRI-IYSGPLG 890 (1252)
Q Consensus 862 ~~~~~~~~~~d~~~~l~~~G~~-~~~g~~~ 890 (1252)
+++ .+.+.||++++|.+ |++ ++.|+++
T Consensus 211 d~~-~~~~~~d~i~~l~~-g~i~~~~g~~~ 238 (530)
T PRK15064 211 DRH-FLNSVCTHMADLDY-GELRVYPGNYD 238 (530)
T ss_pred CHH-HHHhhcceEEEEeC-CEEEEecCCHH
Confidence 975 46678999999975 788 5888764
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.8e-32 Score=292.07 Aligned_cols=177 Identities=27% Similarity=0.357 Sum_probs=145.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccc-cCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDL-HIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+...||+||+.+......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~--- 101 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD--- 101 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC---
Confidence 47999999999999999999999987 9999999988754333457999999864 3456799999987542110
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
. .+.+++++++.+||.+..++.+++ ||||||||++|||||
T Consensus 102 --~---------------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral 141 (205)
T cd03226 102 --A---------------------------------GNEQAETVLKDLDLYALKERHPLS-----LSGGQKQRLAIAAAL 141 (205)
T ss_pred --c---------------------------------cHHHHHHHHHHcCCchhcCCCchh-----CCHHHHHHHHHHHHH
Confidence 0 001246788899998888888766 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEE
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIV 225 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~ 225 (1252)
+.+|++++|||||+|||+.++..+.+.|+++++ .+.+++++. |...++.+.+|++++|++|+++
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~s-H~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVIT-HDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999999999865 466766655 4555778899999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=288.49 Aligned_cols=226 Identities=20% Similarity=0.269 Sum_probs=184.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
-++.+|+++..... .+...++++|||+|++||.+||+|.||||||-..+.+.++++.. ..+|+|.++|
T Consensus 6 lL~v~nLsV~f~~~---------~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G 76 (534)
T COG4172 6 LLSIRNLSVAFHQE---------GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDG 76 (534)
T ss_pred ceeeeccEEEEecC---------CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcC
Confidence 36777777665432 24567999999999999999999999999999999999976532 2479999999
Q ss_pred eeCCc---ccc----cceEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 000853 728 YPKVQ---HTF----ARISGYCEQNDI--HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798 (1252)
Q Consensus 728 ~~~~~---~~~----~~~~~~v~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~ 798 (1252)
.+... ... -..|++++|+|. +.|-.|+.+.+.-..+++ ...+.+..++++.++|+.+|+.+.....-
T Consensus 77 ~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~-- 152 (534)
T COG4172 77 EDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLD-- 152 (534)
T ss_pred hhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhh--
Confidence 98532 222 236899999984 567778887776654443 45567778889999999999987765542
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeee
Q 000853 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILM 877 (1252)
Q Consensus 799 ~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l 877 (1252)
..+++|||||||||.||+||+.+|++||.||||+.||...+.+|.++|+++.++ |..++++|||.+ -+-..+|+++||
T Consensus 153 ~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM 231 (534)
T COG4172 153 AYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVM 231 (534)
T ss_pred hCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEE
Confidence 346899999999999999999999999999999999999999999999999755 999999999975 355667999999
Q ss_pred ecCcEEEEecCCCC
Q 000853 878 KNGGRIIYSGPLGQ 891 (1252)
Q Consensus 878 ~~~G~~~~~g~~~~ 891 (1252)
.+ |++++.|+.++
T Consensus 232 ~~-G~ivE~~~t~~ 244 (534)
T COG4172 232 QH-GEIVETGTTET 244 (534)
T ss_pred ec-cEEeecCcHHH
Confidence 75 99999998653
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-32 Score=304.93 Aligned_cols=190 Identities=22% Similarity=0.349 Sum_probs=153.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEeccccc-cCCCCCHHHHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-------VPQKTSAYISQYDL-HIAEMTVRETIDFSA 72 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-------~~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~ 72 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++. .+...||+||+.|+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~ 111 (290)
T PRK13634 35 YVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGP 111 (290)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHH
Confidence 47999999999999999999999987 99999999987421 12356999999852 344579999999875
Q ss_pred hccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc-ccccccccCCcccccCccccc
Q 000853 73 RCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-ICADTIVGDPMRRGVSGGQKK 151 (1252)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~rgLSGGqkq 151 (1252)
...+.. ..+ ...+++++++.+||+ +..++.+.+ |||||||
T Consensus 112 ~~~~~~-----~~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq~q 152 (290)
T PRK13634 112 MNFGVS-----EED-----------------------------AKQKAREMIELVGLPEELLARSPFE-----LSGGQMR 152 (290)
T ss_pred HHcCCC-----HHH-----------------------------HHHHHHHHHHHCCCChhhhhCCccc-----CCHHHHH
Confidence 422110 000 012357788999997 556777765 9999999
Q ss_pred hhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcc
Q 000853 152 RLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231 (1252)
Q Consensus 152 RvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1252)
||+|||||+.+|++|||||||+|||+.++.++.+.|+++++..+.|++++ +|...++.+.||||++|++|++++.|+++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviii-tHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLV-THSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999876556676665 45566888999999999999999999987
Q ss_pred hH
Q 000853 232 YI 233 (1252)
Q Consensus 232 ~~ 233 (1252)
++
T Consensus 232 ~~ 233 (290)
T PRK13634 232 EI 233 (290)
T ss_pred HH
Confidence 75
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-32 Score=296.06 Aligned_cols=186 Identities=22% Similarity=0.354 Sum_probs=151.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-------QKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||+||+.+...
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 113 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLL 113 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHH
Confidence 47999999999999999999999886 9999999998765332 2468999999888999999999998653
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
.... .. ++ .+.+++++++.+||++..++.+++ ||||||||+
T Consensus 114 ~~~~----~~-~~-----------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LSgG~~qrl 154 (233)
T PRK11629 114 IGKK----KP-AE-----------------------------INSRALEMLAAVGLEHRANHRPSE-----LSGGERQRV 154 (233)
T ss_pred hcCC----CH-HH-----------------------------HHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHH
Confidence 2110 00 00 012346788899998877777765 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCc
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPR 230 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1252)
+||+|++.+|+||||||||+|||+.++.++.+.|+++++..+.+++++.|++ .++.. +|++++|++|+++..|+.
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~-~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL-QLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHh-hCEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999999998754567777766554 45554 689999999999988863
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-32 Score=313.32 Aligned_cols=193 Identities=24% Similarity=0.396 Sum_probs=158.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
+++|+||||||||||||+|+|.++|+ +|+|.++|.++.... .++.++||+|+..+++++||+||+.++......
T Consensus 31 iv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~ 107 (402)
T PRK09536 31 LVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRS 107 (402)
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcc
Confidence 47899999999999999999999987 999999999876533 245799999999888999999999886421100
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
...... .+.+.+++++++.+|+.+..++.+.+ |||||||||+|||
T Consensus 108 --~~~~~~----------------------------~~~~~~v~~~le~vgl~~~~~~~~~~-----LSgGerQRv~IAr 152 (402)
T PRK09536 108 --RFDTWT----------------------------ETDRAAVERAMERTGVAQFADRPVTS-----LSGGERQRVLLAR 152 (402)
T ss_pred --cccCCC----------------------------HHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHH
Confidence 000000 00122457889999999888888766 9999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
||+++|+||||||||+|||+.++.++.+.|+++++ .+.|++++ +|...++.++||++++|++|++++.|+++++
T Consensus 153 AL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIiv-sHdl~~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 153 ALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAA-IHDLDLAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999975 46666654 5667788899999999999999999998775
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-32 Score=295.09 Aligned_cols=187 Identities=30% Similarity=0.494 Sum_probs=153.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF--VPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++..||+||+.+.....+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLP 106 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCC
Confidence 47999999999999999999999887 99999999887532 12356899999988888999999998865432110
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
. .+ .+.+++++++.+||++..++.+++ ||||||||++||+|
T Consensus 107 ----~-~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~a 147 (220)
T cd03263 107 ----K-SE-----------------------------IKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIA 147 (220)
T ss_pred ----H-HH-----------------------------HHHHHHHHHHHcCCHHHHhChhhh-----CCHHHHHHHHHHHH
Confidence 0 00 011246788899998888888766 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcch
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSY 232 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~ 232 (1252)
|+.+|++|+|||||+|||+.++.++.+.|+++++ +.|++++ +|...++.+.+|++++|++|++++.|++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~-sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILT-THSMDEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEE-cCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999999999998864 4555554 455567778999999999999999998665
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-32 Score=305.13 Aligned_cols=203 Identities=23% Similarity=0.378 Sum_probs=158.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEecccc-ccCCCCCHHHHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-------VPQKTSAYISQYD-LHIAEMTVRETIDFSA 72 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-------~~~~~~~yv~Q~~-~~~~~lTV~e~l~f~~ 72 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++ ..+...||.||+.|+.
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~ 110 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGP 110 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHH
Confidence 47999999999999999999999987 99999999987421 1245789999985 2333469999999876
Q ss_pred hccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc-ccccccccCCcccccCccccc
Q 000853 73 RCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-ICADTIVGDPMRRGVSGGQKK 151 (1252)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~rgLSGGqkq 151 (1252)
...+.. ..+ .+.+++++++.+||. +..++.+.+ |||||||
T Consensus 111 ~~~~~~-----~~~-----------------------------~~~~~~~~l~~~~L~~~~~~~~~~~-----LSgGqkq 151 (288)
T PRK13643 111 QNFGIP-----KEK-----------------------------AEKIAAEKLEMVGLADEFWEKSPFE-----LSGGQMR 151 (288)
T ss_pred HHcCCC-----HHH-----------------------------HHHHHHHHHHHcCCChhhccCCccc-----CCHHHHH
Confidence 432110 000 012346788889996 355666654 9999999
Q ss_pred hhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcc
Q 000853 152 RLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231 (1252)
Q Consensus 152 RvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1252)
|++||++|+.+|+||||||||+|||+.++..+.+.|+++.+ .+.|++++. |...++...||+|++|++|++++.|+++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vt-Hd~~~~~~~~dri~~l~~G~i~~~g~~~ 229 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVT-HLMDDVADYADYVYLLEKGHIISCGTPS 229 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEe-cCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998875 466766654 5556888899999999999999999988
Q ss_pred hHH---HHHHhcCCCCCCC
Q 000853 232 YIC---KFFEDCGFRCPER 247 (1252)
Q Consensus 232 ~~~---~~f~~~G~~~p~~ 247 (1252)
++. ..+...|+.+|..
T Consensus 230 ~~~~~~~~~~~~~~~~p~~ 248 (288)
T PRK13643 230 DVFQEVDFLKAHELGVPKA 248 (288)
T ss_pred HHHcCHHHHHHcCCCCChH
Confidence 763 2344556665543
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-32 Score=294.59 Aligned_cols=189 Identities=26% Similarity=0.344 Sum_probs=152.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ..+|++|++.+++.+||+||+.+........
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~-- 85 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIALAVDRVLPD-- 85 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHHHHHHhcccC--
Confidence 47999999999999999999999886 9999999988765332 2489999998999999999998763210000
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
.. ..+ .+.+++++++.+||++..++.+++ ||||||||++||+||+
T Consensus 86 ~~-~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~ 130 (230)
T TIGR01184 86 LS-KSE-----------------------------RRAIVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALS 130 (230)
T ss_pred CC-HHH-----------------------------HHHHHHHHHHHcCCHHHHcCChhh-----CCHHHHHHHHHHHHHH
Confidence 00 000 011246788899998877887766 9999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcch
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSY 232 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~ 232 (1252)
.+|+++||||||+|||+.++..+.+.|+++++..+.+++++. |...++.+.+|+|++|++|+++..|+..+
T Consensus 131 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~s-H~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 131 IRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVT-HDVDEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhcCEEEEEeCCcEecccCcee
Confidence 999999999999999999999999999998765566766655 45567888999999999999998886543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=328.07 Aligned_cols=207 Identities=27% Similarity=0.375 Sum_probs=167.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.+++.
T Consensus 6 ~l~i~~l~~~y~~------------~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~~-- 69 (556)
T PRK11819 6 IYTMNRVSKVVPP------------KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAPG-- 69 (556)
T ss_pred EEEEeeEEEEeCC------------CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC--
Confidence 5888999887631 2469999999999999999999999999999999999877 45899999752
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHH-cc-------------CCCCCC-------------------HHHHHH
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAW-LR-------------LSPEID-------------------LKTKAE 777 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~-l~-------------~~~~~~-------------------~~~~~~ 777 (1252)
..+||++|++.+++.+||.||+.++.. .+ ...... ..+.++
T Consensus 70 ------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 70 ------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred ------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 358999999988889999999987531 10 000000 001234
Q ss_pred HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Q 000853 778 FVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVV 857 (1252)
Q Consensus 778 ~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi 857 (1252)
++.++++.+|+.. .+.. +.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||
T Consensus 144 ~~~~~l~~~gl~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 214 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAK-----VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVV 214 (556)
T ss_pred HHHHHHHhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEE
Confidence 6788899999853 4443 4689999999999999999999999999999999999999999999987 35999
Q ss_pred EEecCCCHHHHHHhcceeeeecCcEEE-EecCCC
Q 000853 858 CTIHQPSIDIFEAFDDLILMKNGGRII-YSGPLG 890 (1252)
Q Consensus 858 ~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~g~~~ 890 (1252)
++||+++ .+...+|++++|.+ |+++ +.|+.+
T Consensus 215 iisHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~~ 246 (556)
T PRK11819 215 AVTHDRY-FLDNVAGWILELDR-GRGIPWEGNYS 246 (556)
T ss_pred EEeCCHH-HHHhhcCeEEEEeC-CEEEEecCCHH
Confidence 9999975 46677899999985 7775 788753
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-32 Score=294.93 Aligned_cols=187 Identities=24% Similarity=0.441 Sum_probs=151.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP----QKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|++||+.+......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 104 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR 104 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC
Confidence 47999999999999999999999987 9999999988754322 3468999999989999999999988653211
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHh-CCcccccccccCCcccccCccccchhHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKIL-GLDICADTIVGDPMRRGVSGGQKKRLTT 155 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~~~~rgLSGGqkqRvsi 155 (1252)
. .+ ....++++++.+ ++++..++.+++ ||||||||++|
T Consensus 105 ---~----~~-----------------------------~~~~~~~~l~~~~~l~~~~~~~~~~-----LS~G~~qrv~l 143 (222)
T cd03224 105 ---R----AK-----------------------------RKARLERVYELFPRLKERRKQLAGT-----LSGGEQQMLAI 143 (222)
T ss_pred ---c----hh-----------------------------HHHHHHHHHHHHHhhhhhhhCchhh-----CCHHHHHHHHH
Confidence 0 00 001124456666 466666777665 99999999999
Q ss_pred HHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 156 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
||||+.+|++|+|||||+|||+.++..+.+.|++++. .+.|++++. |...++.+.+|++++|++|++++.|+.+++
T Consensus 144 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 144 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVE-QNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999875 466666654 555678899999999999999999986654
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-32 Score=294.75 Aligned_cols=184 Identities=27% Similarity=0.405 Sum_probs=151.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF--VPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 109 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLK 109 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCC
Confidence 37899999999999999999999887 99999999887532 12457999999998899899999998764322100
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
..+ .+.+++++++.+||.+..++.+++ ||||||||++||||
T Consensus 110 -----~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~lara 150 (218)
T cd03266 110 -----GDE-----------------------------LTARLEELADRLGMEELLDRRVGG-----FSTGMRQKVAIARA 150 (218)
T ss_pred -----HHH-----------------------------HHHHHHHHHHHcCCHHHHhhhhhh-----cCHHHHHHHHHHHH
Confidence 000 012346788999998888887766 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
++.+|++|+|||||+|||+.++..+.+.|+++.. .+.++|++. |...++...+|++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~t-H~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFST-HIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999864 466766655 5556888899999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-32 Score=343.88 Aligned_cols=189 Identities=24% Similarity=0.354 Sum_probs=152.9
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
++|+||||||||||+|+|+|+++|+ +|+|.+||.++++... ++.++||+|++.+|. .|++|||.++..
T Consensus 482 vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~----- 552 (686)
T TIGR03797 482 VAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGAP----- 552 (686)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCCC-----
Confidence 7999999999999999999999997 9999999999876543 578999999877765 699999987521
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
...+++ .+++...++.. .+ ..++++.||.+|+ .+.+||||||||++||||
T Consensus 553 ---~~~e~i------------------~~al~~a~l~~------~i--~~lp~G~dt~ige-~G~~LSGGQrQRialARA 602 (686)
T TIGR03797 553 ---LTLDEA------------------WEAARMAGLAE------DI--RAMPMGMHTVISE-GGGTLSGGQRQRLLIARA 602 (686)
T ss_pred ---CCHHHH------------------HHHHHHcCcHH------HH--HhccccccccccC-CCCCCCHHHHHHHHHHHH
Confidence 111222 22222222221 11 1378899999997 456799999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
++++|+||+||||||+||+.++.++.+.|+++ ++|+|+..|++ +..+.+|+|++|++|++++.|+++++.+
T Consensus 603 ll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 603 LVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999875 46777766654 6678899999999999999999988753
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-32 Score=295.94 Aligned_cols=189 Identities=24% Similarity=0.351 Sum_probs=150.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCC-----CCCCceeEEEEECCccCCCcc-----ccceEEEeccccccCCCCCHHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKL-----SHSLKVSGEVSYNGYRLDEFV-----PQKTSAYISQYDLHIAEMTVRETIDF 70 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~-----~~~~~~~G~V~~~g~~~~~~~-----~~~~~~yv~Q~~~~~~~lTV~e~l~f 70 (1252)
+++|+||||||||||+++|+|.+ +|+ +|+|.++|.++.... .++.++|++|++.++ .+||+||+.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~ 103 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAY 103 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHh
Confidence 47999999999999999999999 776 999999998875432 245689999988877 7999999988
Q ss_pred HHhccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCcccc
Q 000853 71 SARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQK 150 (1252)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqk 150 (1252)
+....+.. . .+ +.+.+++++++.+||.+..+..+. .+.||||||
T Consensus 104 ~~~~~~~~----~-~~----------------------------~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~ 147 (227)
T cd03260 104 GLRLHGIK----L-KE----------------------------ELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQ 147 (227)
T ss_pred HHHhcCCC----c-HH----------------------------HHHHHHHHHHHHcCCChHHhccCC---cccCCHHHH
Confidence 65332100 0 00 001234668888999876666530 134999999
Q ss_pred chhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCc
Q 000853 151 KRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPR 230 (1252)
Q Consensus 151 qRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1252)
||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++. .++|++ +|...++.+.||++++|++|++++.|++
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIV-THNMQQAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEE-eccHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 9999999999999999999999999999999999999998653 555554 4556688889999999999999999986
Q ss_pred ch
Q 000853 231 SY 232 (1252)
Q Consensus 231 ~~ 232 (1252)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 54
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-32 Score=291.46 Aligned_cols=185 Identities=23% Similarity=0.355 Sum_probs=151.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV-PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+...... .
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~- 100 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL-K- 100 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc-C-
Confidence 47999999999999999999999987 999999998875432 23568999999988999999999987532110 0
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
.. . +.+.+++++++.+||.+..++.+.+ ||||||||++|||||
T Consensus 101 -~~---~----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~ia~al 143 (211)
T cd03298 101 -LT---A----------------------------EDRQAIEVALARVGLAGLEKRLPGE-----LSGGERQRVALARVL 143 (211)
T ss_pred -cc---H----------------------------HHHHHHHHHHHHcCCHHHHhCCccc-----CCHHHHHHHHHHHHH
Confidence 00 0 0012346788899998877887765 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
+.+|++++|||||+|||+.++..+.+.|+++++..+.+++++ +|...++.+.||++++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMV-THQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999876446666664 55666888899999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=275.57 Aligned_cols=157 Identities=22% Similarity=0.324 Sum_probs=134.3
Q ss_pred ccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 000853 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 755 (1252)
Q Consensus 676 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~ 755 (1252)
++.+++++ +++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+ ++|++|+..
T Consensus 12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~---------i~~~~q~~~-------- 71 (177)
T cd03222 12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGIT---------PVYKPQYID-------- 71 (177)
T ss_pred CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCEE---------EEEEcccCC--------
Confidence 35678884 8999999999999999999999999999887 458999999863 688887532
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000853 756 ESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835 (1252)
Q Consensus 756 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD 835 (1252)
||||||||++|||+|+.+|++++|||||+|||
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCC-CEEEEEecCCCHHHHHHhcceeeeecCcEEEEe--cCCCCcchhHHHHHhh
Q 000853 836 ARAAAIVMRAVKNVVETG-RTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS--GPLGQHSCKVIDYFES 902 (1252)
Q Consensus 836 ~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~--g~~~~~~~~~~~~f~~ 902 (1252)
+.++..+.+.|+++++++ .|||++||+++ .+...+|++++|.+ +-.+++ |++...++.+..|+.+
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 171 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEG-EPGVYGIASQPKGTREGINRFLRG 171 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcC-CCccceeccCCcchhHHHHHHHHh
Confidence 999999999999987664 99999999864 45567899999975 444554 7777666667777754
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=300.52 Aligned_cols=191 Identities=23% Similarity=0.360 Sum_probs=156.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|+..+++++||+||+.+....
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 111 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLRE 111 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999886 999999998875422 235689999998889999999999875421
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
.. .... . +.+.+++++++.+||.+..++.+++ |||||||||+
T Consensus 112 ~~---~~~~--~----------------------------~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~ 153 (269)
T PRK11831 112 HT---QLPA--P----------------------------LLHSTVMMKLEAVGLRGAAKLMPSE-----LSGGMARRAA 153 (269)
T ss_pred cc---CCCH--H----------------------------HHHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHH
Confidence 10 0000 0 0011246678899999888888766 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
||+||+.+|++|||||||+|||+.++..+.+.|+++.+..+.+++++. |...++.+.||++++|++|++++.|+++++
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivs-H~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVS-HDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEe-cCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998764466666655 556688889999999999999999987765
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=293.86 Aligned_cols=190 Identities=23% Similarity=0.330 Sum_probs=154.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc--cceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP--QKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~--~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.+|++||+.+....+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~- 104 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGL- 104 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCC-
Confidence 47899999999999999999999887 9999999987754221 24689999998888899999999876532210
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
. ..+ .+..++++++.+||++..++.+++ ||||||||++||||
T Consensus 105 -~---~~~-----------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrl~lara 146 (236)
T TIGR03864 105 -S---RAE-----------------------------ARERIAALLARLGLAERADDKVRE-----LNGGHRRRVEIARA 146 (236)
T ss_pred -C---HHH-----------------------------HHHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHH
Confidence 0 000 011246678889998888888766 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|+.+|+++||||||+|||+.++..+.+.|+++++..+.+++++.|++ .++. .+|++++|++|++++.|+.+++.
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLV-DEIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999998754567776665554 4554 59999999999999999876654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=266.76 Aligned_cols=204 Identities=24% Similarity=0.385 Sum_probs=162.7
Q ss_pred cccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCccc---ccceEEEEccCCC--CC
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT---FARISGYCEQNDI--HS 749 (1252)
Q Consensus 675 ~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~---~~~~~~~v~q~~~--~~ 749 (1252)
..+++|+++|++|..|+++-|+|.||||||||+++|+|... +++|.|.|||.++++.. ....++-|+|+|. ..
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 35789999999999999999999999999999999999887 56999999999987643 2334567899984 57
Q ss_pred CCCCHHHHHHHHHHccCCC-CCC---HHHHHHHHHHHHHHc--CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc
Q 000853 750 PNITVEESVIFSAWLRLSP-EID---LKTKAEFVNEVLQTI--ELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPS 823 (1252)
Q Consensus 750 ~~~tv~e~l~~~~~l~~~~-~~~---~~~~~~~~~~~l~~~--~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~ 823 (1252)
+.+|+.||+..+.. |+.. ... ...+.+...+-+..+ ||++..++.+| -|||||||-++++.|.++.|+
T Consensus 95 ~~lTieENl~la~~-Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pk 168 (263)
T COG1101 95 PELTIEENLALAES-RGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPK 168 (263)
T ss_pred ccccHHHHHHHHHh-cCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCc
Confidence 99999999998753 4221 111 123333444555554 55666666654 699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 824 IIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 824 illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
||+|||-|++|||.+++.+++.-.++.++ +.|.+++||.++ +...+-+|.++|+ +|+|+.+-.
T Consensus 169 iLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh-~G~IvlDv~ 232 (263)
T COG1101 169 ILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLH-SGKIVLDVT 232 (263)
T ss_pred EEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEe-CCeEEEEcc
Confidence 99999999999999999999999998654 789999999765 4555667777776 699998743
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=299.40 Aligned_cols=189 Identities=23% Similarity=0.283 Sum_probs=153.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDL-HIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++..||+||+.|+....+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 109 (274)
T PRK13647 33 KTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG 109 (274)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcC
Confidence 47999999999999999999999987 999999998875432 2356999999863 4566899999998643211
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
.. ..+ .+.+++++++.+||.+..++.+.+ |||||||||+||
T Consensus 110 ~~-----~~~-----------------------------~~~~~~~~l~~~~L~~~~~~~~~~-----LSgG~~qrv~la 150 (274)
T PRK13647 110 LD-----KDE-----------------------------VERRVEEALKAVRMWDFRDKPPYH-----LSYGQKKRVAIA 150 (274)
T ss_pred CC-----HHH-----------------------------HHHHHHHHHHHCCCHHHhcCChhh-----CCHHHHHHHHHH
Confidence 00 000 012346788899998888888866 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
|||+.+|++|||||||+|||+.++.++.+.|+++++ .+.|++++ +|...++.+.||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tili~-tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVA-THDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999999999999875 36666655 4556678889999999999999999987543
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=289.57 Aligned_cols=183 Identities=25% Similarity=0.416 Sum_probs=149.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-------VPQKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|++||+.+...
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~ 101 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLK 101 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHh
Confidence 47999999999999999999999987 99999999876421 123568999999888889999999987642
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
.. .... .+.+++++++.+|+++..++.+++ ||||||||+
T Consensus 102 ~~-------~~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv 140 (214)
T cd03297 102 RK-------RNRE-----------------------------DRISVDELLDLLGLDHLLNRYPAQ-----LSGGEKQRV 140 (214)
T ss_pred hC-------CHHH-----------------------------HHHHHHHHHHHcCCHhHhhcCccc-----CCHHHHHHH
Confidence 11 0000 011246688889998777777765 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
+||+|++.+|++++|||||+|||+.++..+.+.++++++..+.+++++. |...++...+|++++|++|++++.|
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~s-H~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 141 ALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT-HDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEe-cCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999998764466666654 5556788899999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=300.57 Aligned_cols=190 Identities=21% Similarity=0.311 Sum_probs=155.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEecccc-ccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYD-LHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~-~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++ ..++..||+|||.|+....+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~ 111 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG 111 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC
Confidence 47999999999999999999999987 999999999875432 235689999986 36778899999998653221
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
.. ..+ .+.+++++++.+||.+..+..+++ ||||||||++||
T Consensus 112 ~~-----~~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qrv~lA 152 (279)
T PRK13650 112 IP-----HEE-----------------------------MKERVNEALELVGMQDFKEREPAR-----LSGGQKQRVAIA 152 (279)
T ss_pred CC-----HHH-----------------------------HHHHHHHHHHHCCCHhHhhCCccc-----CCHHHHHHHHHH
Confidence 00 000 012357788999998877887766 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|||+.+|++|+|||||+|||+.++..+.+.++++++..+.|++++.|+. .++ ..||+|++|++|+++..|+++++.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~-~~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL-DEV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999765577877776654 455 579999999999999999987653
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=334.04 Aligned_cols=193 Identities=28% Similarity=0.387 Sum_probs=155.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
.++|+||||||||||++.|.|.++|. +|+|.+||.++++.. .++.++||+|++.+|. .||+|||.++..
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~---- 428 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP---- 428 (567)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC----
Confidence 37899999999999999999999986 999999999987654 3678999999777776 899999998642
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
....+++.++.+.++. .+.+ ..+|++.||.||+ ++..||||||||++|||
T Consensus 429 ---~at~eei~~a~k~a~~------------------------~d~I--~~lp~g~dt~vge-~G~~LSgGQrQrlaiAR 478 (567)
T COG1132 429 ---DATDEEIEEALKLANA------------------------HEFI--ANLPDGYDTIVGE-RGVNLSGGQRQRLAIAR 478 (567)
T ss_pred ---CCCHHHHHHHHHHhCh------------------------HHHH--HhCcccccceecC-CCccCCHHHHHHHHHHH
Confidence 1122333333332211 1112 2368899999996 45669999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|++++|+||+||||||+||+.++..|++.++++. .++|+++..|.+ ...+.+|+|+||++|++++.|+++++.+
T Consensus 479 all~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~iiIaHRl--sti~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 479 ALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIAHRL--STIKNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEEEeccH--hHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999775 356777755444 4455599999999999999999999865
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=304.14 Aligned_cols=193 Identities=22% Similarity=0.266 Sum_probs=156.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEecccc--ccCCCCCHHHHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYD--LHIAEMTVRETIDFSA 72 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~--~~~~~lTV~e~l~f~~ 72 (1252)
+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.... .++.++||+|++ .+++.+||.||+.+..
T Consensus 49 ~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l 125 (331)
T PRK15079 49 TLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPL 125 (331)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHH
Confidence 47999999999999999999999886 999999999876432 235699999986 5888999999998865
Q ss_pred hccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc-ccccccccCCcccccCccccc
Q 000853 73 RCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-ICADTIVGDPMRRGVSGGQKK 151 (1252)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~rgLSGGqkq 151 (1252)
........ .++ .+.+++++++.+||. +..++..++ |||||||
T Consensus 126 ~~~~~~~~---~~~-----------------------------~~~~~~~~l~~vgl~~~~~~~~p~~-----LSgG~~Q 168 (331)
T PRK15079 126 RTYHPKLS---RQE-----------------------------VKDRVKAMMLKVGLLPNLINRYPHE-----FSGGQCQ 168 (331)
T ss_pred HHhccCCC---HHH-----------------------------HHHHHHHHHHHcCCChHHhcCCccc-----CCHHHHH
Confidence 32210000 000 012346788899994 456777655 9999999
Q ss_pred hhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcc
Q 000853 152 RLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231 (1252)
Q Consensus 152 RvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1252)
||+||+||+.+|++||+||||+|||..++.++.+.|+++.+..+.++++ ++|....+.+++|+|++|++|++++.|+.+
T Consensus 169 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~-iTHdl~~~~~~~dri~vl~~G~ive~g~~~ 247 (331)
T PRK15079 169 RIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIF-IAHDLAVVKHISDRVLVMYLGHAVELGTYD 247 (331)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999987655555554 566777888899999999999999999987
Q ss_pred hHH
Q 000853 232 YIC 234 (1252)
Q Consensus 232 ~~~ 234 (1252)
++.
T Consensus 248 ~i~ 250 (331)
T PRK15079 248 EVY 250 (331)
T ss_pred HHH
Confidence 764
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-32 Score=343.71 Aligned_cols=190 Identities=23% Similarity=0.327 Sum_probs=153.0
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
++|+||||||||||+++|+|+++|+ +|+|.+||.++.+.. .++.++||+|++.+| +.|++|||.++..
T Consensus 508 vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~gTi~eNi~l~~~----- 578 (710)
T TIGR03796 508 VALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLF-EGTVRDNLTLWDP----- 578 (710)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhh-hccHHHHhhCCCC-----
Confidence 7999999999999999999999997 999999999987654 367899999987766 5799999986421
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
. .+.++..+++...+..+ .+ -.++++.||.+|+ .+.+||||||||++||||
T Consensus 579 --~------------------~~~~~i~~al~~~~l~~------~i--~~lp~gl~t~i~e-~G~~LSGGQrQRiaLARa 629 (710)
T TIGR03796 579 --T------------------IPDADLVRACKDAAIHD------VI--TSRPGGYDAELAE-GGANLSGGQRQRLEIARA 629 (710)
T ss_pred --C------------------CCHHHHHHHHHHhCCHH------HH--HhCcCcccceecc-CCCCCCHHHHHHHHHHHH
Confidence 0 11122222332222221 11 1378899999997 456799999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
++++|+||+||||||+||+.++..+.+.|++ .++|+|+..|++ +..+.||+|++|++|++++.|+++++.+
T Consensus 630 ll~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl--~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 630 LVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL--STIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH--HHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999999999975 367887766654 5677899999999999999999998864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=295.27 Aligned_cols=180 Identities=24% Similarity=0.334 Sum_probs=150.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+||+.+... .
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~------~ 108 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVIDNVGLGLK------G 108 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHHHHHhccc------c
Confidence 47999999999999999999999987 9999999977542 24568999999888888999999987421 0
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
.. +.+++++++.+||.+..+..+++ |||||||||+|||||+
T Consensus 109 --~~--------------------------------~~~~~~~l~~~gl~~~~~~~~~~-----LSgGqkqrl~laraL~ 149 (257)
T PRK11247 109 --QW--------------------------------RDAALQALAAVGLADRANEWPAA-----LSGGQKQRVALARALI 149 (257)
T ss_pred --hH--------------------------------HHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHh
Confidence 00 01235678889998877777765 9999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcc
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1252)
.+|+++||||||+|||+.++..+.+.|+++.+..+.+++++. |...++.+.||+|++|++|++++.|+.+
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivs-Hd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVT-HDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999998665566766654 5555778899999999999999988643
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=292.49 Aligned_cols=191 Identities=20% Similarity=0.371 Sum_probs=156.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV-PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.+..... .
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~-- 100 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG-L-- 100 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccc-c--
Confidence 37899999999999999999999986 899999998875432 2356899999988999999999998753110 0
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
... . ..+.+++++++.+||.+..++.+++ ||||||||++||+|+
T Consensus 101 ~~~---~----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral 144 (232)
T PRK10771 101 KLN---A----------------------------AQREKLHAIARQMGIEDLLARLPGQ-----LSGGQRQRVALARCL 144 (232)
T ss_pred CCC---H----------------------------HHHHHHHHHHHHcCcHHHHhCCccc-----CCHHHHHHHHHHHHH
Confidence 000 0 0012357788999998888888866 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
+.+|++++|||||+|||+.++..+.+.|+++.+..+.+++++. |...++.+.+|++++|++|++++.|+.+++.
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~s-H~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVS-HSLEDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEE-CCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999998764466766654 5555788899999999999999999876653
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=291.76 Aligned_cols=187 Identities=29% Similarity=0.337 Sum_probs=147.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEecccc--ccCCCCCHHHHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYD--LHIAEMTVRETIDFSA 72 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~--~~~~~lTV~e~l~f~~ 72 (1252)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+++.+||+||+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~ 109 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPL 109 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHH
Confidence 47999999999999999999999887 999999999875432 245799999987 4667899999998865
Q ss_pred hccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc-ccccccccCCcccccCccccc
Q 000853 73 RCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-ICADTIVGDPMRRGVSGGQKK 151 (1252)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~rgLSGGqkq 151 (1252)
....... ..+ . .+...+++++.+|+. +..++.+++ |||||||
T Consensus 110 ~~~~~~~----~~~-----------------~-----------~~~~~~~~l~~~~l~~~~~~~~~~~-----LS~G~~q 152 (228)
T cd03257 110 RIHGKLS----KKE-----------------A-----------RKEAVLLLLVGVGLPEEVLNRYPHE-----LSGGQRQ 152 (228)
T ss_pred HhccCCc----HHH-----------------H-----------HHHHHHHHHHHCCCChhHhhCCchh-----cCHHHHH
Confidence 3221000 000 0 000124577888885 456776655 9999999
Q ss_pred hhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 152 RLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 152 RvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++++..+.++|++.|+ ..++...||++++|++|+++..|
T Consensus 153 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~-~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD-LGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999876446677666554 55777899999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=302.95 Aligned_cols=188 Identities=21% Similarity=0.382 Sum_probs=150.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------------------cccceEEEecccc--ccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-------------------VPQKTSAYISQYD--LHI 59 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-------------------~~~~~~~yv~Q~~--~~~ 59 (1252)
+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... ..++.++||+|++ .++
T Consensus 54 ~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~ 130 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF 130 (320)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccc
Confidence 47999999999999999999999987 99999999876432 1245699999986 345
Q ss_pred CCCCHHHHHHHHHhccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc-cccccccc
Q 000853 60 AEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-ICADTIVG 138 (1252)
Q Consensus 60 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg 138 (1252)
..||+||+.|+...... ..++ ...+++++++.+||+ +..++.+.
T Consensus 131 -~~tv~eni~~~~~~~~~-----~~~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 131 -KDTIEKDIMFGPVALGV-----KKSE-----------------------------AKKLAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred -cchHHHHHHhhHHhcCC-----CHHH-----------------------------HHHHHHHHHHHcCCChhHhcCCcc
Confidence 46999999886532110 0000 011346788889997 44566554
Q ss_pred CCcccccCccccchhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEE
Q 000853 139 DPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVML 218 (1252)
Q Consensus 139 ~~~~rgLSGGqkqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~v 218 (1252)
+ |||||||||+|||||+.+|+||||||||+|||+.++.++.+.|+++.. .+.|++++. |...++...||+|++
T Consensus 176 ~-----LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~Tiiivt-Hd~~~~~~~adri~v 248 (320)
T PRK13631 176 G-----LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVIT-HTMEHVLEVADEVIV 248 (320)
T ss_pred c-----CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEe-cCHHHHHHhCCEEEE
Confidence 4 999999999999999999999999999999999999999999998865 466766554 555678889999999
Q ss_pred EcCCcEEEeCCcchH
Q 000853 219 MAEGKIVYHGPRSYI 233 (1252)
Q Consensus 219 l~~G~i~~~G~~~~~ 233 (1252)
|++|++++.|+++++
T Consensus 249 l~~G~i~~~g~~~~~ 263 (320)
T PRK13631 249 MDKGKILKTGTPYEI 263 (320)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999998876
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=291.03 Aligned_cols=181 Identities=23% Similarity=0.381 Sum_probs=146.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-------QKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.+...
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 109 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLL 109 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHH
Confidence 47899999999999999999999987 9999999988754321 2468999999888889999999988643
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
.... .. .+ ...+++++++.+||++..++.+++ |||||||||
T Consensus 110 ~~~~----~~-~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv 150 (221)
T TIGR02211 110 IGKK----SV-KE-----------------------------AKERAYEMLEKVGLEHRINHRPSE-----LSGGERQRV 150 (221)
T ss_pred hcCC----CH-HH-----------------------------HHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHH
Confidence 2110 00 00 011246688889998877777765 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEE
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIV 225 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~ 225 (1252)
+|||+|+.+|+||||||||+|||+.++..+.+.|+++++..+.+++++.|++ .++ ..+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL-ELA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-hhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999998765567777766654 455 457999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=294.38 Aligned_cols=190 Identities=19% Similarity=0.333 Sum_probs=154.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-----cccceEEEeccccccCCCCCHHHHHHHHHhcc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-----VPQKTSAYISQYDLHIAEMTVRETIDFSARCQ 75 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~ 75 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.++....
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 105 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV 105 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh
Confidence 47899999999999999999999887 99999999887542 12456899999988888999999998764210
Q ss_pred CCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHH
Q 000853 76 GTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTT 155 (1252)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsi 155 (1252)
. +. . .. +.+.+++++++.+||++..+..+.+ ||||||||++|
T Consensus 106 ~-~~--~-~~-----------------------------~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~l 147 (240)
T PRK09493 106 R-GA--S-KE-----------------------------EAEKQARELLAKVGLAERAHHYPSE-----LSGGQQQRVAI 147 (240)
T ss_pred c-CC--C-HH-----------------------------HHHHHHHHHHHHcCChHHHhcChhh-----cCHHHHHHHHH
Confidence 0 00 0 00 0012346788899998777777755 99999999999
Q ss_pred HHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 156 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
|||++.+|++++|||||+|||+.++.++.+.|+++.+ .+.+++++. |...++...||++++|++|++++.|+.+++
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~s-H~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVT-HEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 9999999999999999999999999999999998864 466766655 455678889999999999999999987665
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=266.66 Aligned_cols=192 Identities=27% Similarity=0.416 Sum_probs=153.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
|++|+||||||||||||+|+|++.|+ +|+|.+||.++..+.+ .+..+..+|+..+-+..||+|-+.+++.-...
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~ 105 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS 105 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc
Confidence 58999999999999999999999997 9999999999877654 34578999998888889999999998643211
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
+.. ..+ | ...++++|...++.+.+.... +.|||||||||.+||
T Consensus 106 g~~---~~e--------------~---------------~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRVqlAR 148 (259)
T COG4559 106 GRE---PEE--------------D---------------ERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLAR 148 (259)
T ss_pred CCC---chh--------------h---------------HHHHHHHHHHcChhhhhccch-----hhcCchHHHHHHHHH
Confidence 111 000 0 112455667777776655544 349999999999999
Q ss_pred HHhc------CCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcc
Q 000853 158 LIVG------PTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231 (1252)
Q Consensus 158 al~~------~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1252)
.|+. ++++|+||||||+||...+..+++..+.+++. +..++ .+.|+..-...+||||++|++||++..|+++
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~-~VLHDLNLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVL-AVLHDLNLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEE-EEEccchHHHHhhheeeeeeCCeEeecCCHH
Confidence 9974 44689999999999999999999999999975 44444 4567777888999999999999999999988
Q ss_pred hHH
Q 000853 232 YIC 234 (1252)
Q Consensus 232 ~~~ 234 (1252)
+..
T Consensus 227 ~vl 229 (259)
T COG4559 227 DVL 229 (259)
T ss_pred Hhc
Confidence 764
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=296.00 Aligned_cols=190 Identities=21% Similarity=0.301 Sum_probs=153.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-----------cccceEEEeccccccCCCCCHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-----------VPQKTSAYISQYDLHIAEMTVRETID 69 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-----------~~~~~~~yv~Q~~~~~~~lTV~e~l~ 69 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++..||+||+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 107 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENII 107 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHH
Confidence 47899999999999999999999886 99999999876532 12456899999988888899999998
Q ss_pred HHHhccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccc
Q 000853 70 FSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQ 149 (1252)
Q Consensus 70 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGq 149 (1252)
++..... ... . + +.+.+++++++.+||.+..++.+++ |||||
T Consensus 108 ~~~~~~~-~~~--~-~-----------------------------~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~Gq 149 (250)
T PRK11264 108 EGPVIVK-GEP--K-E-----------------------------EATARARELLAKVGLAGKETSYPRR-----LSGGQ 149 (250)
T ss_pred HHHHHhc-CCC--H-H-----------------------------HHHHHHHHHHHHcCCcchhhCChhh-----CChHH
Confidence 7542110 000 0 0 0012246678889998877777765 99999
Q ss_pred cchhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCC
Q 000853 150 KKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229 (1252)
Q Consensus 150 kqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~ 229 (1252)
||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.+++++ +|...++.+.+|++++|++|++++.|+
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~-tH~~~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIV-THEMSFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEE-eCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998865 36666665 455667888999999999999999998
Q ss_pred cchH
Q 000853 230 RSYI 233 (1252)
Q Consensus 230 ~~~~ 233 (1252)
.+++
T Consensus 228 ~~~~ 231 (250)
T PRK11264 228 AKAL 231 (250)
T ss_pred HHHH
Confidence 7665
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=294.65 Aligned_cols=186 Identities=23% Similarity=0.362 Sum_probs=152.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ...++|++|++.+++.+||+||+.+.....+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~-- 101 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVE-- 101 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCC--
Confidence 47999999999999999999999887 99999999887542 235899999988888899999998764321100
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
..+ .+.+++++++.+||.+..++.+++ |||||||||+||+||+
T Consensus 102 ---~~~-----------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrl~laral~ 144 (255)
T PRK11248 102 ---KMQ-----------------------------RLEIAHQMLKKVGLEGAEKRYIWQ-----LSGGQRQRVGIARALA 144 (255)
T ss_pred ---HHH-----------------------------HHHHHHHHHHHcCChhHhhCChhh-----CCHHHHHHHHHHHHHh
Confidence 000 012346788999998877777765 9999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEc--CCcEEEeCCcc
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMA--EGKIVYHGPRS 231 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~--~G~i~~~G~~~ 231 (1252)
.+|++|||||||+|||+.++..+.+.|+++++..+.++|++. |...++...||+|++|+ +|+++..++.+
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivs-H~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLIT-HDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999999999999998654566766654 55668889999999998 59999888643
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=334.92 Aligned_cols=193 Identities=22% Similarity=0.356 Sum_probs=154.4
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
++|+||||||||||+++|+|+++|+ +|+|.+||.++++.. .++.++||+|++.+|+ .|++|||.++..
T Consensus 372 ~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~----- 442 (582)
T PRK11176 372 VALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYART----- 442 (582)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-chHHHHHhcCCC-----
Confidence 7999999999999999999999997 999999999887654 3567999999877775 799999987521
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
+. .+.++..+++...++. +.++ .|+++.||.+|+. ++.||||||||++||||
T Consensus 443 ~~-------------------~~~~~i~~al~~~~l~------~~i~--~lp~Gldt~ig~~-g~~LSGGqrQRi~LARa 494 (582)
T PRK11176 443 EQ-------------------YSREQIEEAARMAYAM------DFIN--KMDNGLDTVIGEN-GVLLSGGQRQRIAIARA 494 (582)
T ss_pred CC-------------------CCHHHHHHHHHHhCcH------HHHH--hcccccCceeCCC-CCcCCHHHHHHHHHHHH
Confidence 00 0111222222222221 1112 2788999999973 56699999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|+++|+||+||||||+||+.++..+.+.++++. .++|+|+..|.+ +..+.||+|++|++|++++.|+++++.+
T Consensus 495 ll~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 495 LLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999998874 357877776655 6778899999999999999999988754
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=340.31 Aligned_cols=192 Identities=23% Similarity=0.418 Sum_probs=155.9
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
++|+||||||||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|++.+|. .|++|||.++..
T Consensus 494 iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~~----- 564 (694)
T TIGR03375 494 VAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGAP----- 564 (694)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCCC-----
Confidence 7999999999999999999999997 9999999999876543 578999999877765 699999987521
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
+.+.++..+++...+..+ .+ -.|+++.||.+|+ .+..||||||||++||||
T Consensus 565 --------------------~~~~~~i~~a~~~~~l~~------~i--~~lp~gl~T~i~e-~G~~LSgGQrQRlalARa 615 (694)
T TIGR03375 565 --------------------YADDEEILRAAELAGVTE------FV--RRHPDGLDMQIGE-RGRSLSGGQRQAVALARA 615 (694)
T ss_pred --------------------CCCHHHHHHHHHHcChHH------HH--HhCcccccceecC-CCCCCCHHHHHHHHHHHH
Confidence 011122222332222221 11 1388999999998 456699999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
++++|+|++||||||+||+.++..+.+.|+++. .++|+|+..|++ +..+.||+|++|++|++++.|+++++.+
T Consensus 616 ll~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl--~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 616 LLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRT--SLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCH--HHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 999999999999999999999999999999875 367887776665 4678999999999999999999998865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=333.84 Aligned_cols=191 Identities=24% Similarity=0.317 Sum_probs=154.7
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
++|+|+||||||||+++|+|+++|+ +|+|.+||.++++.. .++.++||+|++.+|+ .|++|||.++..
T Consensus 370 iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~-~Ti~~NI~~~~~----- 440 (592)
T PRK10790 370 VALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA-DTFLANVTLGRD----- 440 (592)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCcccc-chHHHHHHhCCC-----
Confidence 7999999999999999999999997 899999999887654 3578999999888877 599999988531
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
...+++. +++...+++ +.++ .|+++.||.+|+ .+..||||||||++||||
T Consensus 441 ---~~d~~i~------------------~a~~~~gl~------~~i~--~lp~Gldt~i~e-~g~~LSGGqrQRialARa 490 (592)
T PRK10790 441 ---ISEEQVW------------------QALETVQLA------ELAR--SLPDGLYTPLGE-QGNNLSVGQKQLLALARV 490 (592)
T ss_pred ---CCHHHHH------------------HHHHHcCcH------HHHH--hccccccccccC-CCCCCCHHHHHHHHHHHH
Confidence 0111221 122222211 1122 278889999998 456699999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|+++|+||+||||||+||+.++..+.+.|+++. .++|+|+..|++ +..+.||+|++|++|++++.|+++++.+
T Consensus 491 Ll~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 491 LVQTPQILILDEATANIDSGTEQAIQQALAAVR--EHTTLVVIAHRL--STIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999998875 357888777765 6677899999999999999999998753
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-31 Score=270.93 Aligned_cols=154 Identities=22% Similarity=0.334 Sum_probs=127.7
Q ss_pred ccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 000853 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 755 (1252)
Q Consensus 676 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~ 755 (1252)
.+.+|+|+||++++||+++|+|||||||||||+++.+ .+|++.++|... ...++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~--~~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLP--KFSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCccc--ccccccEEEEhH-----------
Confidence 3568999999999999999999999999999999963 368999987632 112234677766
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC--CcEEEEeCCCC
Q 000853 756 ESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-KYSLVGLPGVSGLSTEQRKRLTIAVELVAN--PSIIFMDEPTS 832 (1252)
Q Consensus 756 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~lSgGqrqrv~ia~al~~~--p~illlDEPTs 832 (1252)
.++++.++|.+. .+.. ++.||||||||++||++|+.+ |++++|||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~~-----~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQK-----LSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 235677777642 3333 468999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 833 GLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 833 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
|||+.++..+.+.|+++.+.|+|||++||+++ ....+|++++|.+
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~--~~~~~d~i~~l~~ 163 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLD--VLSSADWIIDFGP 163 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEECC
Confidence 99999999999999999777999999999975 3467999999964
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=297.71 Aligned_cols=195 Identities=25% Similarity=0.378 Sum_probs=158.0
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
++|+||||||||||.++|.|..+|. +|.|.+||.+++.++. .+.+||.||+-.+|+ .||.|||.= ..
T Consensus 365 lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIaR---f~--- 434 (580)
T COG4618 365 LGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIAR---FG--- 434 (580)
T ss_pred EEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHHh---cc---
Confidence 6899999999999999999999986 9999999999887665 467999999555655 699999952 11
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
+....+.+.++.+.++++ |- ++.|++++||.||+ .+.+||||||||+++|||
T Consensus 435 -~~~d~~kIieAA~lAgvH-----------------------el---Il~lP~GYdT~iG~-~G~~LSgGQRQRIaLARA 486 (580)
T COG4618 435 -EEADPEKVIEAARLAGVH-----------------------EL---ILRLPQGYDTRIGE-GGATLSGGQRQRIALARA 486 (580)
T ss_pred -ccCCHHHHHHHHHHcChH-----------------------HH---HHhCcCCccCccCC-CCCCCCchHHHHHHHHHH
Confidence 111222233333332210 11 35699999999998 567799999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFF 237 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f 237 (1252)
|+++|.+++||||-|+||...+..+.+.+.+... +|.++|+..|. +.++..+|+|++|++|++..+|+.+|+....
T Consensus 487 lYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHR--Ps~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 487 LYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHR--PSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred HcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecC--HHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 9999999999999999999999999999998765 56777766554 4689999999999999999999999987654
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=290.54 Aligned_cols=191 Identities=23% Similarity=0.249 Sum_probs=152.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCC----CCceeEEEEECCccCCCccc-cceEEEeccccc--cCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSH----SLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDL--HIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~----~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~--~~~~lTV~e~l~f~~~ 73 (1252)
+++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+.+|++||+.+...
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~ 90 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLR 90 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHH
Confidence 4799999999999999999999987 5 8999999988754322 247899999874 5567899999987543
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc---ccccccccCCcccccCcccc
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD---ICADTIVGDPMRRGVSGGQK 150 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~---~~~~t~vg~~~~rgLSGGqk 150 (1252)
..+. . . . +.+.+++++++.+||+ +..++.+++ ||||||
T Consensus 91 ~~~~--~--~-~-----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----LS~G~~ 131 (230)
T TIGR02770 91 SLGK--L--S-K-----------------------------QARALILEALEAVGLPDPEEVLKKYPFQ-----LSGGML 131 (230)
T ss_pred HcCc--c--H-H-----------------------------HHHHHHHHHHHHcCCCchHHHHhCChhh-----cCHHHH
Confidence 2110 0 0 0 0012356788899997 345666655 999999
Q ss_pred chhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCc
Q 000853 151 KRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPR 230 (1252)
Q Consensus 151 qRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1252)
|||+||||++.+|+||+|||||+|||+.++..+.+.|+++++..+.|++++. |...++...+|++++|++|+++..|+.
T Consensus 132 qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~ 210 (230)
T TIGR02770 132 QRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLIT-HDLGVVARIADEVAVMDDGRIVERGTV 210 (230)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998764466666655 455588889999999999999999987
Q ss_pred chHH
Q 000853 231 SYIC 234 (1252)
Q Consensus 231 ~~~~ 234 (1252)
+++.
T Consensus 211 ~~~~ 214 (230)
T TIGR02770 211 KEIF 214 (230)
T ss_pred HHHH
Confidence 7653
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=292.61 Aligned_cols=192 Identities=21% Similarity=0.218 Sum_probs=155.7
Q ss_pred ccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEE-----------ECCeeCCcc--c-cc--ceEEE
Q 000853 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR-----------IGGYPKVQH--T-FA--RISGY 741 (1252)
Q Consensus 678 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~--~-~~--~~~~~ 741 (1252)
.+|+|+| .+++||+++|+||||||||||+++|+|..+ +.+|+|. ++|.+.... . .+ ..++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK--PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 5899999 599999999999999999999999999987 4589996 778765321 1 11 23689
Q ss_pred EccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000853 742 CEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVAN 821 (1252)
Q Consensus 742 v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~ 821 (1252)
++|+....+ .++.+++.+.. + ....++.+.++++.+++.+..+.. +..||||||||++||++|+.+
T Consensus 92 ~~~~~~~~~-~~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 92 KPQYVDLIP-KAVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRN-----IDQLSGGELQRVAIAAALARD 157 (255)
T ss_pred ecchhccCc-hHHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHhC
Confidence 999877776 48888887642 1 122345678999999998766554 468999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCC
Q 000853 822 PSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 822 p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 889 (1252)
|++++|||||+|||+.++..+.+.|++++++++|||++||+++ .+...+|++++|. |++++.|-.
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~--~~~~~~~~~ 222 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY--GEPGAYGVV 222 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC--CCCCcceee
Confidence 9999999999999999999999999999877899999999964 4555789998884 567665543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-31 Score=323.10 Aligned_cols=207 Identities=26% Similarity=0.345 Sum_probs=163.7
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 4 ~i~~~nls~~~~~------------~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 67 (552)
T TIGR03719 4 IYTMNRVSKVVPP------------KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAPG-- 67 (552)
T ss_pred EEEEeeEEEecCC------------CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC--
Confidence 4788898886631 2469999999999999999999999999999999999877 45899999752
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHc-cC-----------CCCCCHH---------------------HHHH
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAWL-RL-----------SPEIDLK---------------------TKAE 777 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l-~~-----------~~~~~~~---------------------~~~~ 777 (1252)
..+||++|++.+++.+||.||+.++... +. ......+ ...+
T Consensus 68 ------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (552)
T TIGR03719 68 ------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDR 141 (552)
T ss_pred ------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHH
Confidence 3689999999888899999999875311 00 0000010 0123
Q ss_pred HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Q 000853 778 FVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVV 857 (1252)
Q Consensus 778 ~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi 857 (1252)
++.++++.+++.. .+.. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||
T Consensus 142 ~~~~~l~~~~l~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvI 212 (552)
T TIGR03719 142 KLEIAMDALRCPP-WDAD-----VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVV 212 (552)
T ss_pred HHHHHHhhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEE
Confidence 4566777777743 3333 4689999999999999999999999999999999999999999999876 35999
Q ss_pred EEecCCCHHHHHHhcceeeeecCcEEE-EecCCC
Q 000853 858 CTIHQPSIDIFEAFDDLILMKNGGRII-YSGPLG 890 (1252)
Q Consensus 858 ~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~g~~~ 890 (1252)
++||+++ .+...+|++++|.+ |+++ +.|+.+
T Consensus 213 iisHd~~-~~~~~~d~v~~l~~-g~i~~~~g~~~ 244 (552)
T TIGR03719 213 AVTHDRY-FLDNVAGWILELDR-GRGIPWEGNYS 244 (552)
T ss_pred EEeCCHH-HHHhhcCeEEEEEC-CEEEEecCCHH
Confidence 9999975 46677899999975 7765 778764
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=288.92 Aligned_cols=180 Identities=23% Similarity=0.374 Sum_probs=147.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.+....
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~ 105 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV 105 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHH
Confidence 37899999999999999999999886 999999998875432 235689999999899999999999886543
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
+.. . .++ .+.+++++++.+||++..++.+++ ||||||||++
T Consensus 106 ~~~--~---~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~ 146 (214)
T cd03292 106 TGV--P---PRE-----------------------------IRKRVPAALELVGLSHKHRALPAE-----LSGGEQQRVA 146 (214)
T ss_pred cCC--C---HHH-----------------------------HHHHHHHHHHHcCCHHHhhCChhh-----cCHHHHHHHH
Confidence 210 0 000 012346788889998877877765 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcE
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKI 224 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i 224 (1252)
|||||+.+|++++|||||+|||+.++..+.+.++++.+ .+.+++++. |...++.+.||++++|++|++
T Consensus 147 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivt-H~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 147 IARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVAT-HAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEe-CCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999865 466666654 455677788999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=300.73 Aligned_cols=190 Identities=22% Similarity=0.308 Sum_probs=153.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEecccc--ccCCCCCHHHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-------VPQKTSAYISQYD--LHIAEMTVRETIDFS 71 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-------~~~~~~~yv~Q~~--~~~~~lTV~e~l~f~ 71 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++ .+++ .||+||+.|+
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~ 110 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFG 110 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhh
Confidence 47999999999999999999999987 99999999987532 1245799999975 3444 6999999986
Q ss_pred HhccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc-ccccccccCCcccccCcccc
Q 000853 72 ARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-ICADTIVGDPMRRGVSGGQK 150 (1252)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~rgLSGGqk 150 (1252)
....+.. ..+ .+.+++++++.+||. +..++.+.+ ||||||
T Consensus 111 ~~~~~~~-----~~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq~ 151 (286)
T PRK13646 111 PKNFKMN-----LDE-----------------------------VKNYAHRLLMDLGFSRDVMSQSPFQ-----MSGGQM 151 (286)
T ss_pred HHHcCCC-----HHH-----------------------------HHHHHHHHHHHcCCChhhhhCCccc-----CCHHHH
Confidence 5321100 000 012346788899996 567777655 999999
Q ss_pred chhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCc
Q 000853 151 KRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPR 230 (1252)
Q Consensus 151 qRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1252)
||++|||||+.+|+||+|||||+|||+.++.++.+.++++.+..+.|++++. |...++.+.+|+|++|++|++++.|++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vt-H~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVS-HDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe-cCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999998765566666654 555678889999999999999999998
Q ss_pred chHH
Q 000853 231 SYIC 234 (1252)
Q Consensus 231 ~~~~ 234 (1252)
+++.
T Consensus 231 ~~~~ 234 (286)
T PRK13646 231 KELF 234 (286)
T ss_pred HHHH
Confidence 7653
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=288.31 Aligned_cols=179 Identities=25% Similarity=0.392 Sum_probs=146.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+....
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEV 106 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHH
Confidence 47999999999999999999999886 999999999875432 235689999998888899999999986532
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
.+. . ... .+.+++++++.+||++..++.+++ |||||||||+
T Consensus 107 ~~~--~---~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~ 147 (214)
T TIGR02673 107 RGK--K---ERE-----------------------------IQRRVGAALRQVGLEHKADAFPEQ-----LSGGEQQRVA 147 (214)
T ss_pred cCC--C---HHH-----------------------------HHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHH
Confidence 210 0 000 012346788889998777777765 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCc
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGK 223 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~ 223 (1252)
|||||+.+|++++|||||+|||+.++.++.+.++++.+ .+.+++++. |...++...||++++|++|+
T Consensus 148 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~t-H~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVAT-HDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEe-CCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999999864 466666655 55568888999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=292.63 Aligned_cols=190 Identities=17% Similarity=0.346 Sum_probs=154.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV----PQKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+..+...
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 107 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD 107 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc
Confidence 47999999999999999999999887 999999998875432 23568999999888988999999987543210
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
. .. .. +.+..++++++.+|+.+..++.+++ |||||||||+||
T Consensus 108 ~---~~-~~-----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la 149 (241)
T PRK10895 108 D---LS-AE-----------------------------QREDRANELMEEFHIEHLRDSMGQS-----LSGGERRRVEIA 149 (241)
T ss_pred c---cC-HH-----------------------------HHHHHHHHHHHHcCCHHHhhcchhh-----CCHHHHHHHHHH
Confidence 0 00 00 0012346788889998777777655 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+|++.+|++|+|||||+|||+.++.++.+.++.+.. .+.+++++.| ...++.+.+|++++|++|++++.|+++++
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH-~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDH-NVRETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEc-CHHHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 999999999999999999999999999999998864 4667666654 45688899999999999999999987664
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=303.00 Aligned_cols=192 Identities=24% Similarity=0.402 Sum_probs=152.1
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+||+|+||||||||++.|+|-++|+ +|+|.+||.++..... ++.++.++|. +++...|+|+||..+..
T Consensus 367 vAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr-~hlF~~Tlr~NL~lA~~----- 437 (573)
T COG4987 367 VAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQR-VHLFSGTLRDNLRLANP----- 437 (573)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccc-hHHHHHHHHHHHhhcCC-----
Confidence 6999999999999999999999998 9999999998866554 5678999994 45556799999987531
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
....+++.+.-+. -+++ +.+ .+.+++.||.+|+ .+++||||||||++|||+
T Consensus 438 --~AsDEel~~aL~q------------------vgL~------~l~--~~~p~gl~t~lge-~G~~LSGGE~rRLAlAR~ 488 (573)
T COG4987 438 --DASDEELWAALQQ------------------VGLE------KLL--ESAPDGLNTWLGE-GGRRLSGGERRRLALARA 488 (573)
T ss_pred --CCCHHHHHHHHHH------------------cCHH------HHH--HhChhhhhchhcc-CCCcCCchHHHHHHHHHH
Confidence 1222222222221 1111 111 2367788999998 567899999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|++|.++++|||||.|||+.+++++++.+...+ .|+|+++.+|+-. -.+.||+|++|++|+++++|++.++..
T Consensus 489 LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTHrL~--~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 489 LLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLR--GLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEecccc--cHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 999999999999999999999999999998765 4788877665543 356789999999999999999988753
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=290.61 Aligned_cols=187 Identities=26% Similarity=0.355 Sum_probs=150.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP----QKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|++||+.++.....
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP 104 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC
Confidence 47999999999999999999999987 9999999988754322 3468999999989999999999988653211
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhC-CcccccccccCCcccccCccccchhHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILG-LDICADTIVGDPMRRGVSGGQKKRLTT 155 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~~t~vg~~~~rgLSGGqkqRvsi 155 (1252)
. . . ....+++++.++ +.+..++.+++ ||||||||++|
T Consensus 105 ~----~-~--------------------------------~~~~~~~l~~~~~l~~~~~~~~~~-----LS~G~~qrv~l 142 (230)
T TIGR03410 105 R----R-S--------------------------------RKIPDEIYELFPVLKEMLGRRGGD-----LSGGQQQQLAI 142 (230)
T ss_pred c----c-h--------------------------------HHHHHHHHHHHHhHHHHhhCChhh-----CCHHHHHHHHH
Confidence 0 0 0 001244555565 45556666655 99999999999
Q ss_pred HHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 156 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
|+||+.+|++++|||||+|||+.++.++.+.|+++++..+.|++++. |...++...+|+|++|++|++++.|+.+++
T Consensus 143 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s-H~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 143 ARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVE-QYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEe-CCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999999999998754456666655 445678889999999999999999987665
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-31 Score=284.82 Aligned_cols=186 Identities=22% Similarity=0.337 Sum_probs=151.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV-PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.+......
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--- 99 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--- 99 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC---
Confidence 37899999999999999999999987 999999998875422 24569999999989999999999987532110
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
... . ..+.+++++++.+||.+..++.+.+ ||||||||++||||+
T Consensus 100 ~~~--~-----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral 143 (213)
T TIGR01277 100 KLN--A-----------------------------EQQEKVVDAAQQVGIADYLDRLPEQ-----LSGGQRQRVALARCL 143 (213)
T ss_pred Ccc--H-----------------------------HHHHHHHHHHHHcCcHHHhhCCccc-----CCHHHHHHHHHHHHH
Confidence 000 0 0012246688899998877887765 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCC
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~ 229 (1252)
+.+|++++|||||+|||+.++..+.+.|+++.+..+.|++++. |...++.+.+|++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vs-h~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVT-HHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999998764466666654 55567778999999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=289.38 Aligned_cols=190 Identities=25% Similarity=0.367 Sum_probs=156.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV-PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.+.....+.
T Consensus 27 ~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~-- 101 (235)
T cd03299 27 YFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKV-- 101 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCC--
Confidence 37899999999999999999999987 899999998875432 245789999998899899999999876432110
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
. ..+ .+..++++++.+||.+..++.+.+ ||||||||++||||+
T Consensus 102 ~---~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral 144 (235)
T cd03299 102 D---KKE-----------------------------IERKVLEIAEMLGIDHLLNRKPET-----LSGGEQQRVAIARAL 144 (235)
T ss_pred C---HHH-----------------------------HHHHHHHHHHHcCChhHHhcCccc-----CCHHHHHHHHHHHHH
Confidence 0 000 011246688889998888888766 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+.+|++++|||||+|||+.++.++.+.|++++...+.|++++.|+ ..++.+.+|++++|++|++++.|++++.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD-FEEAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999876446777776655 4577889999999999999999987654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-31 Score=294.22 Aligned_cols=189 Identities=21% Similarity=0.297 Sum_probs=153.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDL-HIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++. +++..|+++|+.|......
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~ 113 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA 113 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcC
Confidence 47999999999999999999999987 999999998875432 2456899999874 6788899999988643211
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
. . .++ .+.+++++++.+|+.+..++.+++ ||||||||++||
T Consensus 114 ~--~---~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la 154 (269)
T PRK13648 114 V--P---YDE-----------------------------MHRRVSEALKQVDMLERADYEPNA-----LSGGQKQRVAIA 154 (269)
T ss_pred C--C---HHH-----------------------------HHHHHHHHHHHcCCchhhhCCccc-----CCHHHHHHHHHH
Confidence 0 0 000 011246788899998877777655 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
||++.+|+++||||||+|||+.++..+.+.|+++.+..+.|++++.|++ .++.. +|+|++|++|++++.|+++++
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~-~~~~~-~d~i~~l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL-SEAME-ADHVIVMNKGTVYKEGTPTEI 229 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc-hHHhc-CCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999998754467777766654 45654 999999999999999988765
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=297.27 Aligned_cols=190 Identities=23% Similarity=0.325 Sum_probs=155.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDL-HIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++..||+||+.++....+
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~ 111 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG 111 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCC
Confidence 47999999999999999999999987 999999999876432 2456899999863 6777899999988653221
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
.. .++ .+.+++++++.+||.+..++.+++ |||||||||+||
T Consensus 112 ~~-----~~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrv~la 152 (279)
T PRK13635 112 VP-----REE-----------------------------MVERVDQALRQVGMEDFLNREPHR-----LSGGQKQRVAIA 152 (279)
T ss_pred CC-----HHH-----------------------------HHHHHHHHHHHcCChhhhhCCccc-----CCHHHHHHHHHH
Confidence 00 000 012357788899999888888766 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|||+.+|+||||||||+|||+.++..+.+.|++++...+.|++++.|++ .++. .||+|++|++|++++.|+.+++.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~-~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL-DEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH-HHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999998765567777766654 4555 59999999999999999877654
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=339.46 Aligned_cols=192 Identities=24% Similarity=0.363 Sum_probs=153.3
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
++|+||||||||||+++|+|+++|+ +|+|.+||.++.+.. .++.++||+|++.+|. .|++|||.++.+.
T Consensus 503 vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~~---- 574 (708)
T TIGR01193 503 TTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAKE---- 574 (708)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCCC----
Confidence 7999999999999999999999997 999999999886554 3568999999887765 6999999875210
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
....++ ..+++...+.. +.+ ..++++.||.||+ .+.+||||||||++||||
T Consensus 575 --~~~~~~------------------i~~a~~~a~l~------~~i--~~lp~gldt~i~e-~G~~LSgGQrQRialARa 625 (708)
T TIGR01193 575 --NVSQDE------------------IWAACEIAEIK------DDI--ENMPLGYQTELSE-EGSSISGGQKQRIALARA 625 (708)
T ss_pred --CCCHHH------------------HHHHHHHhCCH------HHH--HhcccccCcEecC-CCCCCCHHHHHHHHHHHH
Confidence 011112 22222222221 111 2388899999997 456799999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
++++|+||+||||||+||+.++..+.+.|+++ .++|+|+..|.+ +..+.+|+|++|++|++++.|+++++.+
T Consensus 626 ll~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~--~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 626 LLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRL--SVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecch--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999874 367777766655 4678899999999999999999988754
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-31 Score=293.19 Aligned_cols=205 Identities=21% Similarity=0.268 Sum_probs=156.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP----QKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.+++.+||+||+.++.....
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 109 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQL 109 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccc
Confidence 47899999999999999999999987 9999999988754321 2347899999999999999999998643110
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
.. ....... +. +..+. ...+....++++++.+||.+..++.+++ ||||||||++||
T Consensus 110 ~~---~~~~~~~------~~-~~~~~---------~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~la 165 (255)
T PRK11300 110 KT---GLFSGLL------KT-PAFRR---------AESEALDRAATWLERVGLLEHANRQAGN-----LAYGQQRRLEIA 165 (255)
T ss_pred cc---hhhhhhc------cc-ccccc---------chhHHHHHHHHHHHhCChhhhhhCChhh-----CCHHHHHHHHHH
Confidence 00 0000000 00 00000 0000112346778889998877887766 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.++|++. |...++.+.||++++|++|++++.|+.+++
T Consensus 166 ~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~s-H~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 166 RCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIE-HDMKLVMGISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe-CCHHHHHHhCCEEEEEECCeEEecCCHHHH
Confidence 9999999999999999999999999999999998764466666654 556688899999999999999999987664
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-31 Score=293.00 Aligned_cols=190 Identities=27% Similarity=0.416 Sum_probs=154.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+.......
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 106 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGL 106 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCC
Confidence 47899999999999999999999886 999999998765432 234689999998887889999999885421100
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
. .. +.+..++++++.+||.+..++.+++ |||||||||+||+
T Consensus 107 --~---~~-----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGe~qrv~la~ 147 (258)
T PRK13548 107 --S---RA-----------------------------EDDALVAAALAQVDLAHLAGRDYPQ-----LSGGEQQRVQLAR 147 (258)
T ss_pred --C---cH-----------------------------HHHHHHHHHHHHcCCHhHhcCCccc-----CCHHHHHHHHHHH
Confidence 0 00 0011246788889998877888776 9999999999999
Q ss_pred HHh------cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcc
Q 000853 158 LIV------GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231 (1252)
Q Consensus 158 al~------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1252)
||+ .+|++|+|||||+|||+.++..+.+.|+++.+..+.+++++. |...++...||+|++|++|+++..|+.+
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVL-HDLNLAARYADRIVLLHQGRLVADGTPA 226 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEE-CCHHHHHHhcCEEEEEECCEEEeeCCHH
Confidence 999 599999999999999999999999999998744566666655 5566788899999999999999999876
Q ss_pred hH
Q 000853 232 YI 233 (1252)
Q Consensus 232 ~~ 233 (1252)
++
T Consensus 227 ~~ 228 (258)
T PRK13548 227 EV 228 (258)
T ss_pred HH
Confidence 54
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=300.41 Aligned_cols=190 Identities=21% Similarity=0.342 Sum_probs=152.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCC---------------------------ccccceEEEec
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDE---------------------------FVPQKTSAYIS 53 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~---------------------------~~~~~~~~yv~ 53 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.+... ...++.++||+
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~ 111 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVF 111 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEe
Confidence 47999999999999999999999987 8999999865421 11245689999
Q ss_pred ccc-ccCCCCCHHHHHHHHHhccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc-c
Q 000853 54 QYD-LHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-I 131 (1252)
Q Consensus 54 Q~~-~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~ 131 (1252)
|++ ..+...||+|||.|+....+.. .++ .+.+++++++.+||+ +
T Consensus 112 Q~~~~~l~~~tv~e~i~~~~~~~~~~-----~~~-----------------------------~~~~~~~~l~~~gL~~~ 157 (305)
T PRK13651 112 QFAEYQLFEQTIEKDIIFGPVSMGVS-----KEE-----------------------------AKKRAAKYIELVGLDES 157 (305)
T ss_pred eCcccccccccHHHHHHhhHHHcCCC-----HHH-----------------------------HHHHHHHHHHHcCCChh
Confidence 975 3445679999999875432110 000 012357788999996 5
Q ss_pred cccccccCCcccccCccccchhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHh
Q 000853 132 CADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFD 211 (1252)
Q Consensus 132 ~~~t~vg~~~~rgLSGGqkqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~ 211 (1252)
..++.+.+ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+++ ++|...++.+
T Consensus 158 ~~~~~~~~-----LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiii-vtHd~~~~~~ 230 (305)
T PRK13651 158 YLQRSPFE-----LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIIL-VTHDLDNVLE 230 (305)
T ss_pred hhhCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EeeCHHHHHH
Confidence 67777765 999999999999999999999999999999999999999999999874 4666555 4566678889
Q ss_pred hcccEEEEcCCcEEEeCCcchHH
Q 000853 212 LFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 212 ~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
.||+|++|++|++++.|+++++.
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999987753
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=298.40 Aligned_cols=191 Identities=26% Similarity=0.340 Sum_probs=154.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCC--c---cccceEEEeccccc-cCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDE--F---VPQKTSAYISQYDL-HIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~--~---~~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++. .+...||+||+.++...
T Consensus 34 ~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 110 (283)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVN 110 (283)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHH
Confidence 47999999999999999999999987 9999999988741 1 12456999999863 34568999999886432
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
.+.. ..+ .+.+++++++.+||.+..++.+++ ||||||||++
T Consensus 111 ~~~~-----~~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrl~ 151 (283)
T PRK13636 111 LKLP-----EDE-----------------------------VRKRVDNALKRTGIEHLKDKPTHC-----LSFGQKKRVA 151 (283)
T ss_pred cCCC-----HHH-----------------------------HHHHHHHHHHHCCChhhhhCCccc-----CCHHHHHHHH
Confidence 1100 000 012357788999999888887766 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|||||+.+|+||+|||||+|||+.++..+.+.|+++++..+.|++++ +|...++...||++++|++|++++.|+.+++.
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillv-sH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA-THDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999876546676665 45566777899999999999999999987764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=288.27 Aligned_cols=183 Identities=26% Similarity=0.364 Sum_probs=149.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-------QKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.+...
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~ 114 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPAL 114 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHH
Confidence 47999999999999999999999887 9999999988754322 2468999999888899999999987643
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
.+.. .. .+ .+.+++++++.+||.+..++.+++ ||||||||+
T Consensus 115 ~~~~----~~-~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Ge~qrl 155 (228)
T PRK10584 115 LRGE----SS-RQ-----------------------------SRNGAKALLEQLGLGKRLDHLPAQ-----LSGGEQQRV 155 (228)
T ss_pred hcCC----CH-HH-----------------------------HHHHHHHHHHHcCCHhHhhCChhh-----CCHHHHHHH
Confidence 2110 00 00 012346788899998877877766 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEe
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYH 227 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~ 227 (1252)
+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.+++++.|++. ++ ..+|++++|++|++++.
T Consensus 156 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 156 ALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999987655677777666654 55 55999999999998653
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-31 Score=286.12 Aligned_cols=182 Identities=24% Similarity=0.349 Sum_probs=151.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .+.++|++|++.+++..|++||+.+.......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~--- 100 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLLGL--- 100 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcCC---
Confidence 37899999999999999999999887 999999998765322 24689999998888889999999876532210
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
. +.+++++++.+||.+..++.+++ ||||||||++||||++
T Consensus 101 -~----------------------------------~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~~rv~laral~ 140 (223)
T TIGR03740 101 -P----------------------------------DSRIDEVLNIVDLTNTGKKKAKQ-----FSLGMKQRLGIAIALL 140 (223)
T ss_pred -C----------------------------------HHHHHHHHHHcCCcHHHhhhHhh-----CCHHHHHHHHHHHHHh
Confidence 0 01235678889998877777765 9999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcc
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1252)
.+|++++|||||+|||+.++..+.+.|+++.+ .+.+++++.| ...++...+|++++|++|++++.|+..
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH-~~~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSH-ILSEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcC-CHHHHHHhcCEEEEEeCCEEEEecChh
Confidence 99999999999999999999999999999864 4667666555 455788899999999999999999754
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-31 Score=281.12 Aligned_cols=166 Identities=39% Similarity=0.739 Sum_probs=139.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF--VPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|.++|....+|+|.++|.++... ..++.++|++|++.+++.+||+||+.++.+..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--- 111 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--- 111 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc---
Confidence 4799999999999999999999983112399999999987543 23457899999999999999999998753210
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
.++.+ ..||||||||++||+|
T Consensus 112 ------------------------------------------------------~~~~~-----~~LS~Ge~qrl~lara 132 (202)
T cd03233 112 ------------------------------------------------------GNEFV-----RGISGGERKRVSIAEA 132 (202)
T ss_pred ------------------------------------------------------cccch-----hhCCHHHHHHHHHHHH
Confidence 12222 3399999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
|+.+|+++||||||+|||+.++..+.+.++++.+..+.++++++||+..++.+.+|++++|++|++++.|
T Consensus 133 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 133 LVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999876546777888888888999999999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=295.91 Aligned_cols=191 Identities=27% Similarity=0.363 Sum_probs=154.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDL-HIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+...||+||+.+......
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~ 108 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG 108 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcC
Confidence 37899999999999999999999987 999999998875422 2356899999863 3446899999987653211
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
. + .++ .+.+++++++.+||.+..++.+++ ||||||||++||
T Consensus 109 ~----~-~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrl~la 149 (277)
T PRK13652 109 L----D-EET-----------------------------VAHRVSSALHMLGLEELRDRVPHH-----LSGGEKKRVAIA 149 (277)
T ss_pred C----C-HHH-----------------------------HHHHHHHHHHHCCChhHhcCCccc-----CCHHHHHHHHHH
Confidence 0 0 000 012346788999998888888765 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|||+.+|++|||||||+|||+.++..+.+.++++.+..+.|++++. |...++.+.||++++|++|++++.|+++++.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~t-H~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFST-HQLDLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-cCHHHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 9999999999999999999999999999999998764466666654 5556888899999999999999999987763
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=265.44 Aligned_cols=205 Identities=24% Similarity=0.321 Sum_probs=176.2
Q ss_pred ccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCC
Q 000853 674 QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNIT 753 (1252)
Q Consensus 674 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~t 753 (1252)
.....+|+||||++++||.+||+|+||||||||+|+|+|.++ |++|+|.++|.-... ..=.--+.|.+|
T Consensus 37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~--Pt~G~v~v~G~v~~l---------i~lg~Gf~pelT 105 (249)
T COG1134 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK--PTSGKVKVTGKVAPL---------IELGAGFDPELT 105 (249)
T ss_pred cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC--CCCceEEEcceEehh---------hhcccCCCcccc
Confidence 345679999999999999999999999999999999999988 569999999964211 111123457899
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000853 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 833 (1252)
Q Consensus 754 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsg 833 (1252)
.+||+.+-+.+. ..+.++.+++++++++.-+|.+..|.. ++++|-||+-||++|.|.-.+|+||++||-.+-
T Consensus 106 GreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~P-----vktYSSGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 106 GRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQP-----VKTYSSGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred hHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCc-----hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 999999988765 456788889999999999999998876 479999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCcchhHHHHHhhC
Q 000853 834 LDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFESI 903 (1252)
Q Consensus 834 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~ 903 (1252)
-|+.=++.-.+.++++.++++|||++||+++ .+-+.||+.++|.+ |++.+.|.+ +++.++++..
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~-G~i~~~G~~----~~vi~~Y~~~ 241 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEH-GQIRMEGSP----EEVIPAYEED 241 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeC-CEEEEcCCH----HHHHHHHHHh
Confidence 9999999999999999878899999999986 58889999999975 999999998 4556666553
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=290.45 Aligned_cols=187 Identities=23% Similarity=0.383 Sum_probs=150.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV----PQKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++..||+||+.++....
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~- 108 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA- 108 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-
Confidence 47899999999999999999999987 999999998875432 2356999999988899899999998754211
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHh-CCcccccccccCCcccccCccccchhHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKIL-GLDICADTIVGDPMRRGVSGGQKKRLTT 155 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~~~~rgLSGGqkqRvsi 155 (1252)
. ..+. +..++++++.+ ++.+..++.+++ ||||||||++|
T Consensus 109 ---~---~~~~-----------------------------~~~~~~~l~~~~~l~~~~~~~~~~-----LS~G~~qrl~l 148 (237)
T PRK11614 109 ---E---RDQF-----------------------------QERIKWVYELFPRLHERRIQRAGT-----MSGGEQQMLAI 148 (237)
T ss_pred ---C---hhHH-----------------------------HHHHHHHHHHHHHHHHHHhCchhh-----CCHHHHHHHHH
Confidence 0 0000 01123455555 365555565554 99999999999
Q ss_pred HHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 156 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
||||+.+|+|++|||||+|||+.++..+.+.|+++++ .+.|+|++. |...++.+.||++++|++|++++.|+++++
T Consensus 149 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVE-QNANQALKLADRGYVLENGHVVLEDTGDAL 224 (237)
T ss_pred HHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CcHHHHHhhCCEEEEEeCCEEEeeCCHHHH
Confidence 9999999999999999999999999999999999865 467776654 556688899999999999999999987765
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=291.09 Aligned_cols=196 Identities=22% Similarity=0.339 Sum_probs=154.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP----QKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.+......
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~ 106 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDK 106 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccc
Confidence 47899999999999999999999887 9999999987754321 3459999999999999999999988643110
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
. ..... .. .. ..+.+.+++++++.+|+.+..++.+++ |||||||||+||
T Consensus 107 -~-~~~~~------------~~-~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Ge~qrv~la 155 (242)
T TIGR03411 107 -S-VFASL------------FF-RL-----------SAEEKDRIEEVLETIGLADEADRLAGL-----LSHGQKQWLEIG 155 (242)
T ss_pred -c-ccccc------------cc-cc-----------HHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHH
Confidence 0 00000 00 00 000112357788999998877887766 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
||++.+|++|+|||||+|||+.++..+.+.|+++.+ +.++|++. |...++.+.||+|++|++|++++.|+.+++
T Consensus 156 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~s-H~~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 156 MLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVE-HDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEE-CCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 999999999999999999999999999999999864 45666554 556678889999999999999999987654
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=336.38 Aligned_cols=191 Identities=23% Similarity=0.353 Sum_probs=150.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
.++|+||||||||||+++|+|+++|+ +|+|.+||.++++.. .++.++||+|++.+|. .|++|||.++..
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~~---- 580 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGLT---- 580 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCCC----
Confidence 37999999999999999999999997 999999999987654 3567999999877664 799999987531
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
....++ ..+++...+.+ +.++ .++++.||.+|+ .+..||||||||++|||
T Consensus 581 ---~~~~e~------------------i~~al~~a~l~------~~i~--~lp~GldT~ige-~G~~LSGGQkQRlalAR 630 (711)
T TIGR00958 581 ---DTPDEE------------------IMAAAKAANAH------DFIM--EFPNGYDTEVGE-KGSQLSGGQKQRIAIAR 630 (711)
T ss_pred ---CCCHHH------------------HHHHHHHcCCH------HHHH--hCCCccCCcccC-CCCcCCHHHHHHHHHHH
Confidence 001111 12222222221 1111 378889999997 35669999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|++++|+||+||||||+||+.++..+.+ .. ...++|+|+..|++ +..+.+|+|++|++|++++.|+++++.+
T Consensus 631 ALl~~p~ILILDEpTSaLD~~te~~i~~-~~---~~~~~TvIiItHrl--~~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 631 ALVRKPRVLILDEATSALDAECEQLLQE-SR---SRASRTVLLIAHRL--STVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HHhcCCCEEEEEccccccCHHHHHHHHH-hh---ccCCCeEEEEeccH--HHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 9999999999999999999999999988 22 12467777766655 4678899999999999999999998764
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-31 Score=291.89 Aligned_cols=191 Identities=21% Similarity=0.293 Sum_probs=154.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc----------------cccceEEEeccccccCCCCCH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF----------------VPQKTSAYISQYDLHIAEMTV 64 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~----------------~~~~~~~yv~Q~~~~~~~lTV 64 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++..||
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 104 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTV 104 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcH
Confidence 47899999999999999999999987 99999999877432 124568999999889999999
Q ss_pred HHHHHHHHhccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccc
Q 000853 65 RETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRG 144 (1252)
Q Consensus 65 ~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rg 144 (1252)
+||+.++..... +.. .. +.+..++++++.+|+.+..+..+.+
T Consensus 105 ~~nl~~~~~~~~-~~~---~~-----------------------------~~~~~~~~~l~~~gl~~~~~~~~~~----- 146 (252)
T TIGR03005 105 LDNVTEAPVLVL-GMA---RA-----------------------------EAEKRAMELLDMVGLADKADHMPAQ----- 146 (252)
T ss_pred HHHHHHHHHHhc-CCC---HH-----------------------------HHHHHHHHHHHHcCChhHhhcChhh-----
Confidence 999987532100 000 00 0012346788889998777776655
Q ss_pred cCccccchhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcE
Q 000853 145 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKI 224 (1252)
Q Consensus 145 LSGGqkqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i 224 (1252)
||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+..+.+++++.| ...++.+.+|++++|++|++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH-~~~~~~~~~d~i~~l~~G~i 225 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTH-EMGFAREFADRVCFFDKGRI 225 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC-CHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644666666554 55678889999999999999
Q ss_pred EEeCCcchH
Q 000853 225 VYHGPRSYI 233 (1252)
Q Consensus 225 ~~~G~~~~~ 233 (1252)
++.|+.+++
T Consensus 226 ~~~g~~~~~ 234 (252)
T TIGR03005 226 VEQGKPDEI 234 (252)
T ss_pred EEeCCHHHH
Confidence 999987665
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-31 Score=291.15 Aligned_cols=191 Identities=25% Similarity=0.356 Sum_probs=151.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC--CceeEEEEECCccCCCc-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHS--LKVSGEVSYNGYRLDEF-----VPQKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~--~~~~G~V~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+||||||||||+++|+|.++|+ ...+|+|.++|.++... ..++.++|++|++.+++ .||+||+.+...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~ 107 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPR 107 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHH
Confidence 47899999999999999999999863 12289999999987532 12456999999988888 999999998654
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc----ccccccccCCcccccCccc
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD----ICADTIVGDPMRRGVSGGQ 149 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~~t~vg~~~~rgLSGGq 149 (1252)
.++.. . ..+ .+.+++.+++.+||. +..++.+++ |||||
T Consensus 108 ~~~~~---~-~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~~~~~-----LSgG~ 149 (247)
T TIGR00972 108 LHGIK---D-KKE-----------------------------LDEIVEESLKKAALWDEVKDRLHDSALG-----LSGGQ 149 (247)
T ss_pred hcCCC---C-HHH-----------------------------HHHHHHHHHHHcCCCcchhhHhhCCccc-----CCHHH
Confidence 32100 0 000 011246678888987 556666655 99999
Q ss_pred cchhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCC
Q 000853 150 KKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229 (1252)
Q Consensus 150 kqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~ 229 (1252)
|||++|||||+.+|+++||||||+|||+.++..+.+.|+++.+ +.+++++ +|...++...+|++++|++|++++.|+
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiiv-sH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIV-THNMQQAARISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEE-ecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999865 3555554 455668889999999999999999998
Q ss_pred cchH
Q 000853 230 RSYI 233 (1252)
Q Consensus 230 ~~~~ 233 (1252)
++++
T Consensus 227 ~~~~ 230 (247)
T TIGR00972 227 TEQI 230 (247)
T ss_pred HHHH
Confidence 7665
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-31 Score=292.41 Aligned_cols=189 Identities=20% Similarity=0.271 Sum_probs=152.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc----------------cccceEEEeccccccCCCCCH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF----------------VPQKTSAYISQYDLHIAEMTV 64 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~----------------~~~~~~~yv~Q~~~~~~~lTV 64 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 33 ~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv 109 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 109 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcH
Confidence 47899999999999999999999886 89999999876421 124568999999999999999
Q ss_pred HHHHHHHHh-ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccc-cccccCCcc
Q 000853 65 RETIDFSAR-CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICA-DTIVGDPMR 142 (1252)
Q Consensus 65 ~e~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-~t~vg~~~~ 142 (1252)
+||+.++.. .... .. . +.+.+++++++.+||++.. ++.+++
T Consensus 110 ~enl~~~~~~~~~~----~~-~-----------------------------~~~~~~~~~l~~~gl~~~~~~~~~~~--- 152 (257)
T PRK10619 110 LENVMEAPIQVLGL----SK-Q-----------------------------EARERAVKYLAKVGIDERAQGKYPVH--- 152 (257)
T ss_pred HHHHHHHHHHhCCC----CH-H-----------------------------HHHHHHHHHHHHcCCChhhhhCCccc---
Confidence 999987542 1100 00 0 0012346788899998753 665544
Q ss_pred cccCccccchhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCC
Q 000853 143 RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEG 222 (1252)
Q Consensus 143 rgLSGGqkqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G 222 (1252)
||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .+.+++++. |...++...||+|++|++|
T Consensus 153 --LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivs-H~~~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 153 --LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVT-HEMGFARHVSSHVIFLHQG 228 (257)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEe-CCHHHHHHhcCEEEEEECC
Confidence 999999999999999999999999999999999999999999999865 466666654 5556777899999999999
Q ss_pred cEEEeCCcchH
Q 000853 223 KIVYHGPRSYI 233 (1252)
Q Consensus 223 ~i~~~G~~~~~ 233 (1252)
++++.|+++++
T Consensus 229 ~i~~~~~~~~~ 239 (257)
T PRK10619 229 KIEEEGAPEQL 239 (257)
T ss_pred EEEEeCCHHHh
Confidence 99999987665
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=285.17 Aligned_cols=185 Identities=27% Similarity=0.414 Sum_probs=144.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccC--CCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHI--AEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~--~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+. ..+||+||+.+...... .
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~-~ 100 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHK-G 100 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEeccccccccCCCCcHHHHHHhcccccc-c
Confidence 47999999999999999999999887 9999999987642 345689999987653 34799999987542110 0
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
......+ +.+.+++++++.+|+++..++.+++ ||||||||++||||
T Consensus 101 -~~~~~~~----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~a 146 (213)
T cd03235 101 -LFRRLSK----------------------------ADKAKVDEALERVGLSELADRQIGE-----LSGGQQQRVLLARA 146 (213)
T ss_pred -cccCCCH----------------------------HHHHHHHHHHHHcCCHHHHhCCccc-----CCHHHHHHHHHHHH
Confidence 0000000 0012346788899998777887766 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.++|++. |...++.+.+|++++|++| +++.|
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~s-H~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 147 LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVT-HDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEe-CCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999875 566666654 5556788899999999886 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-31 Score=285.48 Aligned_cols=179 Identities=28% Similarity=0.408 Sum_probs=144.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDL-HIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.+||+||+.+......
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~ 105 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG 105 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcC
Confidence 47999999999999999999999887 999999998775432 2356899999864 4667899999987643211
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
. .. .+ .+.+++++++.+||++..++.+++ |||||||||+||
T Consensus 106 ~----~~-~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la 146 (211)
T cd03225 106 L----PE-EE-----------------------------IEERVEEALELVGLEGLRDRSPFT-----LSGGQKQRVAIA 146 (211)
T ss_pred C----CH-HH-----------------------------HHHHHHHHHHHcCcHhhhcCCccc-----CCHHHHHHHHHH
Confidence 0 00 00 011246788889998777777766 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCc
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGK 223 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~ 223 (1252)
|||+.+|++++|||||+|||+.++.++.+.|+++++. +.+++++. |...++...||+|++|++|+
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~s-H~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 147 GVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVT-HDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEe-CCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999998753 66666655 45568888899999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=292.65 Aligned_cols=192 Identities=25% Similarity=0.329 Sum_probs=153.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEecccc--ccCCCCCHHHHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYD--LHIAEMTVRETIDFSA 72 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~--~~~~~lTV~e~l~f~~ 72 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+++.+||+||+.+..
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 115 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPL 115 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHH
Confidence 47899999999999999999999987 999999998875432 235699999986 4667899999998754
Q ss_pred hccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc-ccccccccCCcccccCccccc
Q 000853 73 RCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-ICADTIVGDPMRRGVSGGQKK 151 (1252)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~rgLSGGqkq 151 (1252)
..... .. .. +.+.+++++++.+||. +..+..+++ |||||||
T Consensus 116 ~~~~~---~~--~~----------------------------~~~~~~~~~l~~~gl~~~~~~~~~~~-----LSgGe~q 157 (265)
T TIGR02769 116 RHLTS---LD--ES----------------------------EQKARIAELLDMVGLRSEDADKLPRQ-----LSGGQLQ 157 (265)
T ss_pred HHhcC---CC--HH----------------------------HHHHHHHHHHHHcCCChhhhhCChhh-----CCHHHHH
Confidence 21100 00 00 0012346788899996 566776655 9999999
Q ss_pred hhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcc
Q 000853 152 RLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231 (1252)
Q Consensus 152 RvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1252)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+..+.|++++. |....+...+|++++|++|++++.|+++
T Consensus 158 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivs-H~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (265)
T TIGR02769 158 RINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFIT-HDLRLVQSFCQRVAVMDKGQIVEECDVA 236 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe-CCHHHHHHHhcEEEEEeCCEEEEECCHH
Confidence 999999999999999999999999999999999999998764466766654 5566777899999999999999999887
Q ss_pred hHH
Q 000853 232 YIC 234 (1252)
Q Consensus 232 ~~~ 234 (1252)
++.
T Consensus 237 ~~~ 239 (265)
T TIGR02769 237 QLL 239 (265)
T ss_pred HHc
Confidence 653
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-31 Score=296.96 Aligned_cols=190 Identities=25% Similarity=0.392 Sum_probs=152.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEeccccc-cCCCCCHHHHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-------VPQKTSAYISQYDL-HIAEMTVRETIDFSA 72 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-------~~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~ 72 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++. .+..+||+||+.|+.
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 111 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGP 111 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHH
Confidence 47999999999999999999999987 99999999887432 12356899999862 333689999998865
Q ss_pred hccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc-ccccccccCCcccccCccccc
Q 000853 73 RCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-ICADTIVGDPMRRGVSGGQKK 151 (1252)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~rgLSGGqkq 151 (1252)
..... ..++ .+.+++++++.+||. +..++.+++ |||||||
T Consensus 112 ~~~~~-----~~~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq~q 152 (287)
T PRK13641 112 KNFGF-----SEDE-----------------------------AKEKALKWLKKVGLSEDLISKSPFE-----LSGGQMR 152 (287)
T ss_pred HHcCC-----CHHH-----------------------------HHHHHHHHHHHcCCChhHhhCCccc-----CCHHHHH
Confidence 32110 0000 012346788999997 567887766 9999999
Q ss_pred hhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcc
Q 000853 152 RLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231 (1252)
Q Consensus 152 RvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1252)
||+||+||+.+|++|+|||||+|||+.++.++.+.|+++.+ .+.|+++ ++|...++.+.||++++|++|++++.|+++
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvli-vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVIL-VTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999864 4566655 556677888999999999999999999877
Q ss_pred hHH
Q 000853 232 YIC 234 (1252)
Q Consensus 232 ~~~ 234 (1252)
++.
T Consensus 231 ~~~ 233 (287)
T PRK13641 231 EIF 233 (287)
T ss_pred HHh
Confidence 653
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-31 Score=289.32 Aligned_cols=185 Identities=20% Similarity=0.347 Sum_probs=150.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++ .||+||+.+......
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~- 105 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG- 105 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcC-
Confidence 47899999999999999999999887 999999998865322 2456899999887776 699999986432110
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc-ccccccccCCcccccCccccchhHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-ICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
. . +.+++++++.+||+ +..++.+++ ||||||||++||
T Consensus 106 ----~---~------------------------------~~~~~~~l~~~~l~~~~~~~~~~~-----LS~G~~qrl~la 143 (241)
T PRK14250 106 ----E---K------------------------------NVDVEYYLSIVGLNKEYATRDVKN-----LSGGEAQRVSIA 143 (241)
T ss_pred ----c---H------------------------------HHHHHHHHHHcCCCHHHhhCCccc-----CCHHHHHHHHHH
Confidence 0 0 01235678888996 455666554 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+|++.+|++|||||||+|||+.++..+.+.|+++.+..+.+++++ +|...++.+.||+|++|++|+++..|++.++
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 144 RTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWI-THNMEQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEE-eccHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999876446676665 4556678889999999999999999987665
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=287.40 Aligned_cols=185 Identities=25% Similarity=0.292 Sum_probs=149.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEec-cccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF--VPQKTSAYIS-QYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~--~~~~~~~yv~-Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.+.... ..++.++|++ |++.+++.+||+||+.+.....+.
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~ 125 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDL 125 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCC
Confidence 47999999999999999999999987 99999999875321 2245689997 556778889999999886543211
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
. ..+ ...+++++++.+||++..++.+++ ||||||||++||+
T Consensus 126 ~-----~~~-----------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrl~la~ 166 (236)
T cd03267 126 P-----PAR-----------------------------FKKRLDELSELLDLEELLDTPVRQ-----LSLGQRMRAEIAA 166 (236)
T ss_pred C-----HHH-----------------------------HHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHH
Confidence 0 000 011246678889999888888866 9999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
||+.+|++++|||||+|||+.++.++.+.|+++++..+.+++++. |...++...+|++++|++|++++.|
T Consensus 167 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivs-H~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 167 ALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTS-HYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEe-cCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999998765566766655 4455788899999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-31 Score=247.08 Aligned_cols=180 Identities=26% Similarity=0.333 Sum_probs=154.7
Q ss_pred ccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-eEEEEEEECCeeCCc-ccccceEEEEccCCCCCCCCC
Q 000853 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYPKVQ-HTFARISGYCEQNDIHSPNIT 753 (1252)
Q Consensus 676 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~~t 753 (1252)
...+|-|+|++|.+||++-||||||||||||+..+.|.+.+. ..+|++++|+++++. ...+|++|+.+||+.++|.++
T Consensus 14 g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphls 93 (213)
T COG4136 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLS 93 (213)
T ss_pred CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccc
Confidence 457899999999999999999999999999999999977643 468999999998654 345678999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000853 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 833 (1252)
Q Consensus 754 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsg 833 (1252)
|.+|+.|+. +.....+.++..++..+++.||.+..+.- +..||||||-||++-|+|+..|+.++||||.|.
T Consensus 94 Vg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~ 164 (213)
T COG4136 94 VGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQD-----PATLSGGQRARVALLRALLAQPKALLLDEPFSR 164 (213)
T ss_pred cccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchHHHHHHHHHHHhCcceeeeCCchhH
Confidence 999999864 23333445667789999999999887654 568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH-HHHCCCEEEEEecCCC
Q 000853 834 LDARAAAIVMRAVKN-VVETGRTVVCTIHQPS 864 (1252)
Q Consensus 834 LD~~~~~~i~~~l~~-~~~~g~tvi~~~H~~~ 864 (1252)
||..-+.++.+..-. ....|.-+|.+|||..
T Consensus 165 LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 165 LDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 999999999987655 4455999999999853
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=286.08 Aligned_cols=190 Identities=26% Similarity=0.347 Sum_probs=156.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV-PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+|++||+.+.......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~-- 102 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKL-- 102 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCC--
Confidence 47999999999999999999999986 899999998875432 245789999998888889999999886543210
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
. ... .+..++.+++.+||.+..++.+.+ ||||||||++|||||
T Consensus 103 ~---~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----lS~G~~qrl~laral 145 (232)
T cd03300 103 P---KAE-----------------------------IKERVAEALDLVQLEGYANRKPSQ-----LSGGQQQRVAIARAL 145 (232)
T ss_pred C---HHH-----------------------------HHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHH
Confidence 0 000 011346788889998878877755 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+.+|++++|||||+|||+.++.++.+.++++....+.|++++.|++ .++.+.+|++++|++|++++.|+..+.
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999998764467777766554 577889999999999999999976654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=294.60 Aligned_cols=190 Identities=24% Similarity=0.314 Sum_probs=154.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc----cccceEEEeccccc-cCCCCCHHHHHHHHHhcc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF----VPQKTSAYISQYDL-HIAEMTVRETIDFSARCQ 75 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~----~~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~ 75 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++. .+...||.||+.|+....
T Consensus 38 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~ 114 (280)
T PRK13633 38 FLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL 114 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc
Confidence 47999999999999999999999987 99999999887542 12457899999863 334579999999875322
Q ss_pred CCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHH
Q 000853 76 GTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTT 155 (1252)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsi 155 (1252)
+. . ..+ .+..++++++.+||++..++.+++ ||||||||++|
T Consensus 115 ~~--~---~~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrv~l 155 (280)
T PRK13633 115 GI--P---PEE-----------------------------IRERVDESLKKVGMYEYRRHAPHL-----LSGGQKQRVAI 155 (280)
T ss_pred CC--C---HHH-----------------------------HHHHHHHHHHHCCCHhHhhCCccc-----CCHHHHHHHHH
Confidence 10 0 000 012357788999999888888876 99999999999
Q ss_pred HHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 156 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|++|+.+|+++||||||+|||+.++..+.+.|+++++..+.|++++.|++. ++.. +|++++|++|++++.|+++++.
T Consensus 156 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 156 AGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999987655777777665554 5555 9999999999999999988764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1252 | ||||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-09 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-09 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-09 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 8e-09 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-08 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-08 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-08 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-08 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-08 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-08 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 4e-08 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-07 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-07 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-07 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-07 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-07 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 5e-07 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 5e-07 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 9e-07 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-06 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 1e-06 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-06 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 5e-06 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 5e-06 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 5e-06 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 6e-06 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 7e-06 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 8e-06 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-05 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-05 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-05 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-05 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 4e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-05 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 5e-05 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 7e-05 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 7e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-05 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-04 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 3e-04 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-04 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 3e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 5e-04 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-04 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 6e-04 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 6e-04 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 7e-04 |
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1252 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 4e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-10 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 4e-24 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-07 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 7e-24 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-07 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 7e-23 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-13 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 8e-22 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 8e-16 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 4e-21 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-08 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 5e-21 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 9e-06 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-18 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 6e-08 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-05 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-17 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-09 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-04 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 4e-17 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-06 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-16 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-14 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-09 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 9e-09 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-16 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-13 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-07 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-05 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 5e-14 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 5e-13 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 7e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-05 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 2e-12 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-12 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 4e-12 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-11 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 6e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-04 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-04 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-04 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-10 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-10 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-10 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-10 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 3e-10 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 6e-10 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-05 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-09 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-09 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 3e-09 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-05 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 4e-09 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 7e-06 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 8e-09 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 9e-09 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 1e-08 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 5e-08 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 3e-07 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 3e-07 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 4e-07 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 5e-07 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 6e-07 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 6e-07 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-06 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 2e-06 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 4e-06 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 1e-05 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-05 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 2e-05 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 4e-05 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 9e-05 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 4e-25
Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 18/212 (8%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFA- 736
L I+ G + L+G +GAGKTT + ++S + + G + + G V+
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS----SGIVTVFGKNVVEEPHEV 86
Query: 737 -RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSL 795
++ Y + N+ E + F A S +++ E + L
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE---RATEIAGLGEKIKDR 143
Query: 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRT 855
V S ++L IA L+ NP + +DEPTSGLD A V + +K + G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 856 VVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
++ + H ++ E D I + + G I+ +G
Sbjct: 199 ILVSSH--NMLEVEFLCDRIALIHNGTIVETG 228
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 48/237 (20%), Positives = 73/237 (30%), Gaps = 66/237 (27%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDE----------FVPQKTSAYIS 53
L+G G GKTT L +S + S SG V+ G + E ++P++ AY
Sbjct: 46 LIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAY-- 100
Query: 54 QYDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEG 113
M E + F A
Sbjct: 101 ------RNMQGIEYLRFVAGFYA----------------------------------SSS 120
Query: 114 LEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISN 173
E + +I GL V S G ++L ++ R +DE ++
Sbjct: 121 SEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTS 175
Query: 174 GLDSSTTFQIVSFLKHLVHITDATALIS--LLQPAPETFDLFDDVMLMAEGKIVYHG 228
GLD ++ LK T L+S + L D + L+ G IV G
Sbjct: 176 GLDVLNAREVRKILKQASQ-EGLTILVSSHNMLEVEF---LCDRIALIHNGTIVETG 228
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 4e-24
Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 34/224 (15%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT--- 734
L ++G R G + L+G +GAGK+TL+ ++G +G +G I+ G P +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATK 70
Query: 735 FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYS 794
A Y Q V + L + E +N+V + LD
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYL----TLHQHDKTR----TELLNDVAGALALDD---- 118
Query: 795 LVGLPGVSGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSGLDARAAAIVMRAVK 847
+G + LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 119 KLGRS-TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILS 177
Query: 848 NVVETGRTVVCTIHQPSIDIFEAF---DDLILMKNGGRIIYSGP 888
+ + G +V + H D+ L+K GG+++ SG
Sbjct: 178 ALSQQGLAIVMSSH----DLNHTLRHAHRAWLLK-GGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 41/246 (16%), Positives = 70/246 (28%), Gaps = 74/246 (30%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ---KTSAYISQYDL 57
+ L+G G GK+TLL+ ++G S G + + G L+ + AY+SQ
Sbjct: 28 ILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALHRAYLSQQQT 83
Query: 58 HIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKN 117
V + ++ +
Sbjct: 84 PPFATPVWHYL--------------TL----------HQHDKTRTELLNDV--------- 110
Query: 118 LQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL--------TTGELIVGPTRALFMD 169
L LD +SGG+ +R+ T + + L +D
Sbjct: 111 ------AGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAG-QLLLLD 158
Query: 170 EISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDL------FDDVMLMAEGK 223
E N LD + + L L ++S DL L+ GK
Sbjct: 159 EPMNSLDVAQQSALDKILSALSQ-QGLAIVMSS-------HDLNHTLRHAHRAWLLKGGK 210
Query: 224 IVYHGP 229
++ G
Sbjct: 211 MLASGR 216
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 7e-24
Identities = 48/219 (21%), Positives = 84/219 (38%), Gaps = 36/219 (16%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFA 736
L + G + A++G +G GK+TL+D+L G R G IE
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------------VY 65
Query: 737 RISGYCEQNDIHSPNITVEESVIF------SAWLRLSPEIDLKTKAEFVNEVLQTIELDG 790
+ G+ Q +V + V+ + + + D + + L + L
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSH-DY----QVAMQALDYLNLTH 120
Query: 791 IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV 850
+ + LS QR+ + IA + + +I +DEPTS LD IV+ + ++
Sbjct: 121 LAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLA 175
Query: 851 -ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
TVV T HQP+ + + +L+ G
Sbjct: 176 QSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 1e-07
Identities = 36/236 (15%), Positives = 73/236 (30%), Gaps = 61/236 (25%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
+ +LG GCGK+TLL L G G++ ++ ++ Q+
Sbjct: 33 ILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY----------QSIGFVPQFFSSPF 79
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
+V + + L G ++ +
Sbjct: 80 AYSVLDIV------------------------LMGRST------HINTFAKPKSHDYQVA 109
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI----VGPTRALFMDEISNGLD 176
L L L A +SGGQ++ + LI + + +DE ++ LD
Sbjct: 110 MQALDYLNLTHLAKREFTS-----LSGGQRQLI----LIARAIASECKLILLDEPTSALD 160
Query: 177 SSTTFQIVSFLKHLVHITDATALISL--LQPAPETFDLFDDVMLMAEGKIVYHGPR 230
+ ++S L L + T + + + + +L+ + + R
Sbjct: 161 LANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV---VAIANKTLLLNKQNFKFGETR 213
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 7e-23
Identities = 43/208 (20%), Positives = 84/208 (40%), Gaps = 25/208 (12%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 737
L IT T G + G +G GKTTL+ +S + +G+I G P + +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL----KGEIIYNGVP-ITKVKGK 79
Query: 738 ISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVG 797
I + + I I+VE+ + A L +K + + L+++E+ +K
Sbjct: 80 I-FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK--- 130
Query: 798 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV-ETGRTV 856
+ LS +R+ +A L+ N I +D+P +D + V++++ ++ E G +
Sbjct: 131 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187
Query: 857 VCTIHQPSIDIFEAFDDLILMKNGGRII 884
+ + D + I
Sbjct: 188 ISSRE-----ELSYCDVNENLHKYSTKI 210
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 3e-13
Identities = 32/228 (14%), Positives = 68/228 (29%), Gaps = 64/228 (28%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDE------FVPQKTSAYISQYDL 57
G G GKTTLL +S L GE+ YNG + + F+P++
Sbjct: 40 FHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGKIFFLPEEIIVP------ 90
Query: 58 HIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKN 117
+++V + + A G +K+ K I
Sbjct: 91 --RKISVEDYLKAVASLYG-----------VKVNK--------------NEI-------- 115
Query: 118 LQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDS 177
L+ + + + +S G +R+ ++ +D+ +D
Sbjct: 116 ---MDALESVEVLDLKKKL------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 178 STTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIV 225
+ +++ + ++ + S E D + +
Sbjct: 167 DSKHKVLKSILEILKEKGIVIISS-----REELSYCDVNENLHKYSTK 209
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 8e-22
Identities = 53/279 (18%), Positives = 113/279 (40%), Gaps = 47/279 (16%)
Query: 627 HIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGT 686
H + P+ M++ + + + +L I+
Sbjct: 4 HHHHHHSSGLVPRGSHMLIQLDQIGRMKQGKT--------------------ILKKISWQ 43
Query: 687 FRPGILTALMGVSGAGKTTLMDVLSGR--KTGGIIEGDIRIGGYP--KVQHTFARIS--- 739
G L G++GAGKTTL+++L+ T G + + G KV ++ +
Sbjct: 44 IAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGYSAETVRQHI 99
Query: 740 GYCEQNDIH---SPNITVEESVI--FSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYS 794
G+ + V + VI + + +ID + + E +++L+ + +
Sbjct: 100 GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLKLVGMSAKAQQ 157
Query: 795 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGR 854
+G LST +++R+ IA L+ P ++ +DEP +GLD A ++ + ++ ++
Sbjct: 158 YIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYP 212
Query: 855 --TVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891
++ H +I F ++L+K+ G+ I G +
Sbjct: 213 TLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGAVED 249
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 8e-16
Identities = 51/247 (20%), Positives = 86/247 (34%), Gaps = 71/247 (28%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDE-------------FVPQKTSA 50
L G G GKTTLL+ L+ SG V+ G + FV
Sbjct: 52 LYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLE 108
Query: 51 YISQYDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAIS 110
+ V + + +G S+ G++ D D + +A
Sbjct: 109 KFQE------GERVIDVV-------ISG-AFKSI----------GVYQDIDDEIRNEA-- 142
Query: 111 VEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRA----- 165
+LK++G+ A +G +S G+K+R+ +I RA
Sbjct: 143 ----------HQLLKLVGMSAKAQQYIGY-----LSTGEKQRV----MIA---RALMGQP 180
Query: 166 --LFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGK 223
L +DE + GLD ++S L L A+I + E F ++L+ +G+
Sbjct: 181 QVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQ 240
Query: 224 IVYHGPR 230
+ G
Sbjct: 241 SIQQGAV 247
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 4e-21
Identities = 42/233 (18%), Positives = 78/233 (33%), Gaps = 44/233 (18%)
Query: 668 KKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII--EGDIRI 725
+ L +I G ++G +G+GKTTL+ R G++ G+I I
Sbjct: 9 ITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLL-----RAISGLLPYSGNIFI 62
Query: 726 GGYPKVQHTFARISGYCEQN-DIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQ 784
G Y + + +TV + V L+ + E+L+
Sbjct: 63 NG--MEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELK-------GLDRDLFLEMLK 113
Query: 785 TIELDGIKYSLVGLPG------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 838
+ L + LS Q + ++ L + P I+ +DEP +DA
Sbjct: 114 ----------ALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 839 AAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAF---DDLILMKNGGRIIYSGP 888
++ R +K E G+ + H ++ + G R+
Sbjct: 164 RHVISRYIK---EYGKEGILVTH----ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 38/234 (16%), Positives = 69/234 (29%), Gaps = 74/234 (31%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQ----YDLHI 59
+LG G GKTTLL A+SG L SG + NG + + Y + Y++
Sbjct: 35 ILGPNGSGKTTLLRAISG----LLPYSGNIFINGMEVRKIRNYI--RYSTNLPEAYEIG- 87
Query: 60 AEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQ 119
+TV + + +G +++ K + E + +
Sbjct: 88 --VTVNDIVYLYEELKGL-----DRDLFLEMLKALKLG--------------EEILRR-- 124
Query: 120 TDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRAL-------FMDEIS 172
+ K+ S GQ V + AL +DE
Sbjct: 125 --KLYKL-------------------SAGQSVL-------VRTSLALASQPEIVGLDEPF 156
Query: 173 NGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVY 226
+D++ I ++K L++ + G +
Sbjct: 157 ENVDAARRHVISRYIKEY-GKE--GILVTHEL--DMLNLYKEYKAYFLVGNRLQ 205
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 5e-21
Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 28/218 (12%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGII---EGDIRIGGYPKVQHTFA 736
L +++ G + G +G+GK+TL+ +++G +I GD+ G K +
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-----LIEPTSGDVLYDGERKKGYEIR 77
Query: 737 RISGYCEQNDIHSP-----NITVEESVIFSAW-LRLSPEIDLKTKAEFVNEVLQTIELDG 790
R G Q P V + V F+ + V + ++ + LD
Sbjct: 78 RNIGIAFQY----PEDQFFAERVFDEVAFAVKNFYPDRDP-----VPLVKKAMEFVGLDF 128
Query: 791 IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV 850
+ P LS +++R+ IA +V P I+ +DEP GLD ++R V+
Sbjct: 129 DSFKDRV-P--FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185
Query: 851 ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
G+TV+ H + D +++++ G+ ++ G
Sbjct: 186 TLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 9e-06
Identities = 43/238 (18%), Positives = 88/238 (36%), Gaps = 66/238 (27%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQY-DLHIAEM 62
+ G+ G GK+TLL ++G + + SG+V Y+G R + ++ QY +
Sbjct: 38 VAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAE 94
Query: 63 TVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDY 122
V + + F+ + ++ + L V M+ + GL+ +
Sbjct: 95 RVFDEVAFAVKNFYPD------RDPVPL-----------VKKAMEFV---GLD---FDSF 131
Query: 123 ILKILGLDICADTIVGDPMRRGVSGGQKKRLT-TGELIVGPTRALFMDEISNGLDSSTTF 181
+ P +SGG+K+R+ ++ P L +DE GLD
Sbjct: 132 KDR-------------VPFF--LSGGEKRRVAIASVIVHEP-DILILDEPLVGLDREGKT 175
Query: 182 QIVSFLKHL-------VHIT---DATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229
++ ++ + I+ + + D V+++ +GK V+ G
Sbjct: 176 DLLRIVEKWKTLGKTVILISHDIE------------TVINHVDRVVVLEKGKKVFDGT 221
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 3e-18
Identities = 49/259 (18%), Positives = 96/259 (37%), Gaps = 41/259 (15%)
Query: 642 KMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQ------LLSDITGTFRPGILTAL 695
L F L F D + R F+ L+ +L+ G F + +
Sbjct: 324 AENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVM 383
Query: 696 MGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNIT 753
MG +G GKTTL+ +L+G + G + + K Q + G T
Sbjct: 384 MGENGTGKTTLIKLLAGALKPDEGQDIPKLNVS--MKPQKIAPKFPG------------T 429
Query: 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI--KYSLVGLPGVSGLSTEQRKR 811
V + +F ++ + +F +V++ + +D I + V LS + +R
Sbjct: 430 VRQ--LFFK--KIRGQF---LNPQFQTDVVKPLRIDDIIDQE-------VQHLSGGELQR 475
Query: 812 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV-ETGRTVVCTIHQPSIDIFEA 870
+ I + L I +DEP++ LD+ I + ++ + +T H +
Sbjct: 476 VAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIM-ATYL 534
Query: 871 FDDLILMKNG-GRIIYSGP 888
D +I+ + + ++
Sbjct: 535 ADKVIVFEGIPSKNAHARA 553
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-13
Identities = 42/232 (18%), Positives = 86/232 (37%), Gaps = 35/232 (15%)
Query: 671 GFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEG---DIRI 725
N KL L RPG + L+G +G GK+T + +L+G + G + I
Sbjct: 88 SANSFKLHRLPTP----RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEI 143
Query: 726 GGYPKVQHTFARISGYCEQNDIHSPNI--------TVEESVIFSAWLRLSPEIDLKTKAE 777
Y + + E + ++ V L ++ ++ E
Sbjct: 144 IKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPE 200
Query: 778 FVNEVLQTIELDGI--KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
V ++ ++L+ + + + LS + +R I + V + DEP+S LD
Sbjct: 201 DVKRYIKILQLENVLKRD-------IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD 253
Query: 836 ARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFD--DLILMKNGGRIIY 885
+ + +++++ + V+C H D+ D + + G +Y
Sbjct: 254 VKQRLNAAQIIRSLLAPTKYVICVEH----DLSVLDYLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 6e-08
Identities = 54/275 (19%), Positives = 90/275 (32%), Gaps = 76/275 (27%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMT 63
++G G GKTTL+ L+G L G+ L+++
Sbjct: 383 MMGENGTGKTTLIKLLAGALKPD---EGQDIP--------------------KLNVSM-- 417
Query: 64 VRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYI 123
K +K+A FP + K I + L QTD +
Sbjct: 418 -------------------------KPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTD-V 451
Query: 124 LKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQI 183
+K L +D D V +SGG+ +R+ + P +DE S LDS
Sbjct: 452 VKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIIC 506
Query: 184 VSFLKHLVHITDATALI-----SLLQPAPETFDLFDDVMLMAEGKIVY---HGPRSY--- 232
++ + TA I + L D V++ P S
Sbjct: 507 SKVIRRFILHNKKTAFIVEHDFIMAT------YLADKVIVFEGIPSKNAHARAPESLLTG 560
Query: 233 ICKFFEDCG--FRCPERKGVADFLQEVISRKDQEQ 265
+F ++ FR + + ++ S+ D+EQ
Sbjct: 561 CNRFLKNLNVTFR-RDPNSFRPRINKLDSQMDKEQ 594
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 41/246 (16%), Positives = 71/246 (28%), Gaps = 71/246 (28%)
Query: 2 TLLLGHPGCGKTTLLSALSGKLSHSL-KVSGEVSYN------------GYRLDEFVPQKT 48
L+G G GK+T L L+GK +L + + Y
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIK 165
Query: 49 SAYISQYDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKA 108
+ QY +I ++ + + R + E +
Sbjct: 166 AIIKPQYVDNIP-RAIKGPVQKV--GELLKLRMEKSPEDV-------------------- 202
Query: 109 ISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGV---SGGQKKRLTTGELIVGPTRA 165
+KIL L+ + ++R + SGG+ +R G V
Sbjct: 203 ------------KRYIKILQLE--------NVLKRDIEKLSGGELQRFAIGMSCVQEADV 242
Query: 166 LFMDEISNGLDSSTTFQIVSFLKHLVHITDATALI-----SLLQPAPETFDLFDDVMLMA 220
DE S+ LD ++ L+ + S+L L D V ++
Sbjct: 243 YMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVEHDLSVLD------YLSDFVCIIY 295
Query: 221 EGKIVY 226
VY
Sbjct: 296 GVPSVY 301
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 2e-17
Identities = 58/250 (23%), Positives = 98/250 (39%), Gaps = 37/250 (14%)
Query: 646 PFEPLTLTFEDVQYYVDTPSAMKKRGFNQK-KLQLLSDITGTFRPGILTALMGVSGAGKT 704
+ + D+ D + MK +K L G + G + ++G +G GKT
Sbjct: 249 EIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKT 308
Query: 705 TLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSA 762
T +L G G + + +I Y K Q F + + TV++
Sbjct: 309 TFARILVGEITADEGSVTPEKQILSY-KPQRIFP------------NYDGTVQQ------ 349
Query: 763 WLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANP 822
+L + + L T + F EV + + L + S V + LS + ++L IA L
Sbjct: 350 YLENASKDALSTSSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKEA 404
Query: 823 SIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTI-HQPSIDIFEAF---DDLILMK 878
+ +D+P+S LD IV +A+K V + V I H D+ D +I+ K
Sbjct: 405 DLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH----DLSIHDYIADRIIVFK 460
Query: 879 NGGRIIYSGP 888
G +G
Sbjct: 461 --GEPEKAGL 468
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 8e-12
Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 35/216 (16%)
Query: 686 TFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQN 745
T + + ++G +G GKTT++ +L+G II R G N
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGE----IIPNFGDPNSKVGKDEVLKRFRGKEIYN 76
Query: 746 DIHSPNITVEESVIFSAWLRLS---PEIDLKTKAEF--VNEVLQTIELDGIKYSLVGLPG 800
+S L++ ++ +K VNE+L I+ G K + L
Sbjct: 77 YFKEL---------YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLN 127
Query: 801 VSG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET 852
++ LS +RL +A L+ + D+P+S LD R + +A++ +++
Sbjct: 128 MTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK- 186
Query: 853 GRTVVCTIHQPSIDIF---EAFDDLILMKNGGRIIY 885
+ V+ H D+ D + ++ G +Y
Sbjct: 187 NKYVIVVDH----DLIVLDYLTDLIHIIY-GESSVY 217
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 1e-09
Identities = 45/289 (15%), Positives = 84/289 (29%), Gaps = 102/289 (35%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMT 63
+LG G GKTT L G+++ G V+ + +Y Q
Sbjct: 299 ILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQR-------- 338
Query: 64 VRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDY- 122
IFP+ D + + + +
Sbjct: 339 --------------------------------IFPNYDGTVQQYLENASKDALSTSSWFF 366
Query: 123 --ILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
+ K L L ++ V D +SGG+ ++L + +D+ S+ LD
Sbjct: 367 EEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEER 421
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLF------DDVMLMAEGKIVYHGPRSYIC 234
+ + +K + A I DL D +++ +G+ G +
Sbjct: 422 YIVAKAIKRVTRERKAVTFII-------DHDLSIHDYIADRIIVF-KGEPEKAGLATSPV 473
Query: 235 KFFEDCGFRCPERKGVADFLQEV------------------ISRKDQEQ 265
+ G+ +FL+E+ S D+ Q
Sbjct: 474 TL----------KTGMNEFLRELEVTFRRDAETGRPRVNKIGSYLDRVQ 512
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 35/238 (14%), Positives = 73/238 (30%), Gaps = 60/238 (25%)
Query: 3 LLLGHPGCGKTTLLSALSGKL-----SHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDL 57
+LG G GKTT+L L+G++ + KV + +R E I Y
Sbjct: 29 GVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE---------IYNYFK 79
Query: 58 HIAE--MTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLE 115
+ + + I + + +K + + + + +
Sbjct: 80 ELYSNELKIVHKIQ----------YVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMT 129
Query: 116 KNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGL 175
NL + SGG +RL ++ D+ S+ L
Sbjct: 130 -NLWNKDANIL-------------------SGGGLQRLLVAASLLREADVYIFDQPSSYL 169
Query: 176 DSSTTFQIVSFLKHLVHITDATALI-----SLLQPAPETFDLFDDVMLMAEGKIVYHG 228
D + ++ L+ + ++ +L L D + ++ G+ +G
Sbjct: 170 DVRERMNMAKAIRELLK--NKYVIVVDHDLIVLD------YLTDLIHII-YGESSVYG 218
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 4e-17
Identities = 59/255 (23%), Positives = 101/255 (39%), Gaps = 53/255 (20%)
Query: 652 LTFEDVQY-YVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVL 710
L E++ Y Y D A L I + G +TA++G +G GK+TL
Sbjct: 8 LKVEELNYNYSDGTHA-------------LKGINMNIKRGEVTAILGGNGVGKSTLFQNF 54
Query: 711 SGRKTGGII---EGDIRIGGYP--KVQHTFARIS---GYCEQNDIHSPN-----ITVEES 757
+G I+ G I P + ++ G Q+ P+ +V +
Sbjct: 55 NG-----ILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQD----PDNQLFSASVYQD 105
Query: 758 VIFSAWLRLSPE---IDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTI 814
V F + + V+ L+ ++ +K LS Q+KR+ I
Sbjct: 106 VSFG------AVNMKLPEDEIRKRVDNALKRTGIEHLKDK-----PTHCLSFGQKKRVAI 154
Query: 815 AVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNV-VETGRTVVCTIHQPSIDIFEAFDD 873
A LV P ++ +DEPT+GLD + +M+ + + E G T++ H + D+
Sbjct: 155 AGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDN 213
Query: 874 LILMKNGGRIIYSGP 888
+ +M GR+I G
Sbjct: 214 VFVM-KEGRVILQGN 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 52/242 (21%), Positives = 86/242 (35%), Gaps = 69/242 (28%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYIS-------QY- 55
+LG G GK+TL +G L S SG + ++ +D +K + Q
Sbjct: 39 ILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKGIMKLRESIGIVFQDP 93
Query: 56 DLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLE 115
D + +V + + F A E+ K VD +K +E L+
Sbjct: 94 DNQLFSASVYQDVSFGAVNMKL-----PEDEIRKR-----------VDNALKRTGIEHLK 137
Query: 116 K----NLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT-TGELIVGPTRALFMDE 170
L S GQKKR+ G L++ P + L +DE
Sbjct: 138 DKPTHCL---------------------------SFGQKKRVAIAGVLVMEP-KVLILDE 169
Query: 171 ISNGLDSSTTFQIVSFLKHLVHITDATALIS---LLQPAPETFDLFDDVMLMAEGKIVYH 227
+ GLD +I+ L + T +I+ + D+V +M EG+++
Sbjct: 170 PTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI----DIVPLYCDNVFVMKEGRVILQ 225
Query: 228 GP 229
G
Sbjct: 226 GN 227
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 2e-16
Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 34/205 (16%)
Query: 656 DVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--R 713
+ + V+ P +K G L G R G + ++G +G GKTT + +L+G
Sbjct: 353 ERETLVEYPRLVKDYGS-----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE 407
Query: 714 KTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLK 773
T G +E D+ + P+ I TV E + S +
Sbjct: 408 PTEGKVEWDLTVAYKPQ------YIK--------AEYEGTVYE--LLS-----KIDSSKL 446
Query: 774 TKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 833
+ E+L+ + + + V LS + +R+ IA L+ + I +DEP++
Sbjct: 447 NSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAY 501
Query: 834 LDARAAAIVMRAVKNVVE-TGRTVV 857
LD V RA+++++E +T +
Sbjct: 502 LDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 5e-14
Identities = 40/193 (20%), Positives = 76/193 (39%), Gaps = 30/193 (15%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR----KTGGIIEGDIRIGGYPKVQHT 734
+ + G++ ++G +G GKTT + +L+G+ D I +
Sbjct: 106 FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR----- 160
Query: 735 FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEF--VNEVLQTIELDGIK 792
N++ + ++ I ++ +DL KA V E+L+ ++ G
Sbjct: 161 ---------GNELQNYFERLKNGEIRPV-VK-PQYVDLLPKAVKGKVRELLKKVDEVGKF 209
Query: 793 YSLVGLPG--------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 844
+V + LS + +R+ IA L+ F DEP+S LD R V R
Sbjct: 210 EEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR 269
Query: 845 AVKNVVETGRTVV 857
++ + G+ V+
Sbjct: 270 VIRRLANEGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 52/273 (19%), Positives = 93/273 (34%), Gaps = 80/273 (29%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMT 63
++G G GKTT + L+G + G+V ++ T AY QY E T
Sbjct: 387 IVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDL----------TVAYKPQYIKAEYEGT 433
Query: 64 VRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYI 123
V E + ++ + + + +
Sbjct: 434 VYELL----------------SKIDSSKLNSNFY----------------------KTEL 455
Query: 124 LKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQI 183
LK LG+ D V D +SGG+ +R+ ++ +DE S LD +
Sbjct: 456 LKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 510
Query: 184 VSFLKHLVHITDATALI-----SLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFE 238
++HL+ + TAL+ ++ + D +++ EG+ HG
Sbjct: 511 SRAIRHLMEKNEKTALVVEHDVLMID------YVSDRLIVF-EGEPGRHG---RALPPM- 559
Query: 239 DCGFRCPERKGVADFLQE--VISRKDQEQYWHR 269
R+G+ FL + R+D + R
Sbjct: 560 ------GMREGMNRFLASVGITFRRDPDSGRPR 586
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 9e-09
Identities = 38/200 (19%), Positives = 73/200 (36%), Gaps = 58/200 (29%)
Query: 3 LLLGHPGCGKTTLLSALSGKLSHSL---KVSGEVSYNGYRLDEFVPQKTSAYISQYDLHI 59
++G G GKTT + L+G+L +L S + +R +E + Y +
Sbjct: 121 GIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE---------LQNYFERL 171
Query: 60 AEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAIS---VEGLEK 116
+ ++ V+K VD KA+ E L+K
Sbjct: 172 --------------------KNGEIRPVVK---------PQYVDLLPKAVKGKVRELLKK 202
Query: 117 ---NLQTDYILKILGLDICADTIVGDPMRRGV---SGGQKKRLTTGELIVGPTRALFMDE 170
+ + ++K L L+ + + R + SGG+ +R+ ++ F DE
Sbjct: 203 VDEVGKFEEVVKELELE--------NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDE 254
Query: 171 ISNGLDSSTTFQIVSFLKHL 190
S+ LD ++ ++ L
Sbjct: 255 PSSYLDIRQRLKVARVIRRL 274
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 3e-16
Identities = 46/218 (21%), Positives = 88/218 (40%), Gaps = 37/218 (16%)
Query: 645 LPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKT 704
+ F E + + T + K + + L G + G + ++G +G GKT
Sbjct: 271 IKFTKTGERVEIERETLVTYPRLVKDYGSFR----LEVEPGEIKKGEVIGIVGPNGIGKT 326
Query: 705 TLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSA 762
T + +L+G T G IE D+ + P+ I TV E + S
Sbjct: 327 TFVKMLAGVEEPTEGKIEWDLTVAYKPQ------YIK--------ADYEGTVYE--LLS- 369
Query: 763 WLRLSPEIDLKTKAEFVNEVLQTIELDGI--KYSLVGLPGVSGLSTEQRKRLTIAVELVA 820
+ + E+L+ + + + + V+ LS + +R+ IA L+
Sbjct: 370 ----KIDASKLNSNFYKTELLKPLGIIDLYDRE-------VNELSGGELQRVAIAATLLR 418
Query: 821 NPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVV 857
+ I +DEP++ LD V RA+++++E +T +
Sbjct: 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-13
Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 38/203 (18%)
Query: 671 GFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR----KTGGIIEGDIRIG 726
G N L L + + G++ ++G +G GK+T + +L+G+ G D I
Sbjct: 32 GVNAFVLYRLPVV----KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIR 87
Query: 727 GYP--KVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEF--VNEV 782
+ ++Q+ F ++ +I + +DL KA V E+
Sbjct: 88 AFRGNELQNYFEKLKN----GEI---------RPVVK-----PQYVDLIPKAVKGKVIEL 129
Query: 783 LQTIELDGIKYSLVGLPG--------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834
L+ + G +V + LS + +R+ IA L+ N + F DEP+S L
Sbjct: 130 LKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYL 189
Query: 835 DARAAAIVMRAVKNVVETGRTVV 857
D R RA++ + E G++V+
Sbjct: 190 DIRQRLNAARAIRRLSEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 54/279 (19%), Positives = 97/279 (34%), Gaps = 84/279 (30%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMT 63
++G G GKTT + L+G + G++ ++ + PQ A E T
Sbjct: 317 IVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLTVA--YKPQYIKA--------DYEGT 363
Query: 64 VRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYI 123
V E + ++ + + + +T+ +
Sbjct: 364 VYELLS----------------KIDASKLNSNFY---------------------KTE-L 385
Query: 124 LKILGLDICADTIVGDPMRRGV---SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
LK LG+ D R V SGG+ +R+ ++ +DE S LD
Sbjct: 386 LKPLGII--------DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR 437
Query: 181 FQIVSFLKHLVHITDATALI-----SLLQPAPETFDLFDDVMLMAEGKIVYHGP------ 229
+ ++HL+ + TAL+ ++ + D +M+ EG+ +G
Sbjct: 438 LAVSRAIRHLMEKNEKTALVVEHDVLMID------YVSDRLMVF-EGEPGKYGRALPPMG 490
Query: 230 -RSYICKFFEDCG--FRCPERKGVADFLQEVISRKDQEQ 265
R + +F G FR G + S KD+EQ
Sbjct: 491 MREGMNRFLASIGITFRRDPDTGRPR-ANKEGSVKDREQ 528
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-05
Identities = 38/201 (18%), Positives = 73/201 (36%), Gaps = 58/201 (28%)
Query: 2 TLLLGHPGCGKTTLLSALSGKLSHSL---KVSGEVSYNGYRLDEFVPQKTSAYISQYDLH 58
++G G GK+T + L+G+L +L S + +R +E + Y
Sbjct: 50 VGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNE---------LQNYFEK 100
Query: 59 IAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAIS---VEGLE 115
+ + ++ V+K VD KA+ +E L+
Sbjct: 101 L--------------------KNGEIRPVVK---------PQYVDLIPKAVKGKVIELLK 131
Query: 116 KNLQT---DYILKILGLDICADTIVGDPMRRGV---SGGQKKRLTTGELIVGPTRALFMD 169
K +T + ++K L L+ + + R + SGG+ +R+ ++ F D
Sbjct: 132 KADETGKLEEVVKALELE--------NVLEREIQHLSGGELQRVAIAAALLRNATFYFFD 183
Query: 170 EISNGLDSSTTFQIVSFLKHL 190
E S+ LD ++ L
Sbjct: 184 EPSSYLDIRQRLNAARAIRRL 204
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 72.5 bits (179), Expect = 5e-14
Identities = 45/205 (21%), Positives = 86/205 (41%), Gaps = 41/205 (20%)
Query: 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE-GDIRIGGYP--KV 731
+ L ++ + G +T ++G +G+GK+TL++V++G + G + + I ++
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 732 QH-----TFARISGYCEQNDIHS-PNITVEESV-----------IFSAWLRLSP--EIDL 772
H TF Q +TV E++ + S + + E ++
Sbjct: 80 YHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM 130
Query: 773 KTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 832
KA ++L+ ++L + G LS Q K + I L+ NP +I MDEP +
Sbjct: 131 VEKAF---KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIA 182
Query: 833 GLDARAAAIVMRAVKNVVETGRTVV 857
G+ A + V + G T +
Sbjct: 183 GVAPGLAHDIFNHVLELKAKGITFL 207
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 69.4 bits (171), Expect = 5e-13
Identities = 69/268 (25%), Positives = 118/268 (44%), Gaps = 82/268 (30%)
Query: 652 LTFEDV--QYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLM-- 707
+TF ++ +Y D+P +L +I + + G + ++G SG+GK+TL
Sbjct: 8 ITFRNIRFRYKPDSP-------------VILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 54
Query: 708 -----DVLSGRKTGGIIEG-DIR----------IGGYPKVQHT--FAR-----ISGYCEQ 744
+G+ I+G D+ +G Q R IS
Sbjct: 55 IQRFYIPENGQVL---IDGHDLALADPNWLRRQVGVVL--QDNVLLNRSIIDNIS----- 104
Query: 745 NDIHSPNITVEESVIFSAWLRLSPEIDLKTKA----EFVNEVLQTIELDGIKY-SLVGLP 799
+ +P ++VE+ VI++A K +F++E+ + Y ++VG
Sbjct: 105 --LANPGMSVEK-VIYAA------------KLAGAHDFISELRE-------GYNTIVGEQ 142
Query: 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCT 859
G LS QR+R+ IA LV NP I+ DE TS LD + ++MR + + + GRTV+
Sbjct: 143 GAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIII 200
Query: 860 IHQPSIDIFEAFDDLILMKNGGRIIYSG 887
H+ S + A D I++ G+I+ G
Sbjct: 201 AHRLST-VKNA--DRIIVMEKGKIVEQG 225
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 7e-13
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 31/205 (15%)
Query: 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG--IIEGDIRIGGYPK 730
+ ++L I+ + + G +++G SG+GK+TL+ +L T G +EG + +
Sbjct: 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEG-KEVDYTNE 73
Query: 731 VQHTFAR---ISGYCEQ--NDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQT 785
+ + R + G+ Q I P +T E+VI P+ + K + E +L
Sbjct: 74 KELSLLRNRKL-GFVFQFHYLI--PELTALENVIVPMLKMGKPKKEAKERGE---YLLS- 126
Query: 786 IELDGIKYSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
+GL LS +++R+ IA L P ++F DEPT LD+
Sbjct: 127 ---------ELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTK 177
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSI 865
VM + E G ++V H+ +
Sbjct: 178 RVMDIFLKINEGGTSIVMVTHEREL 202
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 8e-13
Identities = 93/614 (15%), Positives = 191/614 (31%), Gaps = 172/614 (28%)
Query: 600 RTIIAYEKYSKLQDQKDGSSGSDR-----------------------DKKHIDAPLKTTA 636
++I++ E+ + KD SG+ R + K + +P+KT
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 637 GPKRGKMVLPFEPLTLTFEDVQ----YYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGIL 692
+ E + D Q Y V K ++ L L RP
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL---RQALLEL-------RPAKN 152
Query: 693 TALMGVSGAGKTTL-MDVLSGRKTGGIIEGDI---RIGGYPK-------VQHTFARISG- 740
+ GV G+GKT + +DV K ++ I + +Q +I
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 741 YCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYS------ 794
+ ++D HS NI + I + RL LK+K + N +L + L ++ +
Sbjct: 213 WTSRSD-HSSNIKLRIHSIQAELRRL-----LKSK-PYENCLL--V-LLNVQNAKAWNAF 262
Query: 795 ------LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL-DARAAAIVMRAVK 847
L+ T + K++T + A + I +D + L +++++ +
Sbjct: 263 NLSCKILL---------TTRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 848 NVVETGRTVVCTIHQPSIDIFEAF--DDLILMKN--------GGRIIYSGPLGQHSCKVI 897
+ V T + + I D L N II + S V+
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII------ESSLNVL 366
Query: 898 D------YFES---------IP-GVLKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRE 941
+ F+ IP +L + W + + V+ ++++
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSL-------IWF---DVIKSDVMVVVN--KLHKY 414
Query: 942 STLHQENKELGKQLSSPSPGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRI 1001
S + ++ KE + ++ + L + + YN+ +
Sbjct: 415 SLVEKQPKESTISIP-------SIYLELKVKLEN----EYALHRSIVD-----HYNIPKT 458
Query: 1002 VFTCAMSLLY--GILFWQQG---KKIKTQQEVFNMFGAMY------SAAI---FFGINNC 1047
+ + Y + G K I+ E +F ++ I N
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIE-HPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 1048 SSVVPLVATERTVLYR----------ERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVII 1097
S++ + + Y+ ER + + L+ Y + + + +
Sbjct: 518 GSILNTLQQLK--FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL---LRIAL 572
Query: 1098 TYPMIGYYWSAYKI 1111
+ A+K
Sbjct: 573 MAEDEAIFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 4e-10
Identities = 54/372 (14%), Positives = 115/372 (30%), Gaps = 106/372 (28%)
Query: 3 LLLGHPGCGKTTL-----------------------------------LSALSGKLSHSL 27
L+ G G GKT + L L ++ +
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 28 KVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVR-----ETID-FSARCQGTGHRA 81
+ S N + + + + + + + F+ C+
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK------ 267
Query: 82 DSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGD-P 140
++ + + D A IS++ L D + +L D D P
Sbjct: 268 -----ILLTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLP 319
Query: 141 MRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALI 200
++ LTT + ++ + I +GL + ++ V+ K L I +++ +
Sbjct: 320 ---------REVLTTNPRRL----SIIAESIRDGLATWDNWKHVNCDK-LTTIIESS--L 363
Query: 201 SLLQPAPETFDLFDDVMLMAEG-KIVYHGPRSYICKFFEDCGFRCPERKGVADFLQEVIS 259
++L+PA E +FD + + I P + + D + ++
Sbjct: 364 NVLEPA-EYRKMFDRLSVFPPSAHI----PTILLSLIWFDVIKSDVM-----VVVNKLHK 413
Query: 260 RKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHKKALSFKKYS 319
E+ K+ SI +L LK++ E N+ H+ + Y+
Sbjct: 414 YSLVEK--QPKESTISIPSI----------YLELKVKLE-----NEYALHRSIVD--HYN 454
Query: 320 LTK----WELLK 327
+ K +L+
Sbjct: 455 IPKTFDSDDLIP 466
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 2e-06
Identities = 71/522 (13%), Positives = 146/522 (27%), Gaps = 142/522 (27%)
Query: 769 EIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 828
D K + +L E+D I + +
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHI----IMSK-----DAVSGTLRLF---------WTLLS 73
Query: 829 EPTSGLDARAAAIVMRAVKNVVETGRT-VVCTIH----QPSIDIFEAFDDLILMKNGGRI 883
+ +V + V+ V+ ++ I QPS+ + + N ++
Sbjct: 74 KQEE--------MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 884 IYSGPLGQHSCKVIDYFESIP-GVLKIKD---NYNPATW-----M---------LEV-SS 924
Y S LK++ PA + L+V S
Sbjct: 126 F------------AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 925 SSIETELG-----VDFGQIYR-ESTLHQENK---ELGKQLSSPSPGSKDLHFPTHFPQNG 975
++ ++ ++ E+ L K ++ +S S S ++ H Q
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 976 ------WEQFKACL------WKQNLSYWRNPSYNLR-RIVFTCAMSLLYGILFWQQGKKI 1022
+ ++ CL N W ++NL +I+ T + L I
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQ--NAKAWN--AFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 1023 KTQQEVFNMFGAMYSAAIFFGINNCS---------SVVPLVATERTVLYRERFAGMYSPW 1073
+ ++ +C + P + R+ + W
Sbjct: 290 -SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD-GLATWDNW 347
Query: 1074 AYSFAQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMV 1133
+ L + I++ + V+ + +F
Sbjct: 348 KHVNCDKLTTI----IESSLNVLEPAEYRKMFDR-LSVF-----------------PPSA 385
Query: 1134 SLTPNVQLASILASSSYS----MLNLFCGYSITKRQIPK---WWIWAYYL-----CPTSW 1181
+ + L+ I S ++N YS+ ++Q PK I + YL +
Sbjct: 386 HIPTIL-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKVKLENEY 443
Query: 1182 VLNGMLSSQYGDIEKEISAFGETKTVSGFLDDYFGFNHDLLG 1223
L+ + Y +I K + +LD YF ++H +G
Sbjct: 444 ALHRSIVDHY-NIPKTFDSDDLIPP---YLDQYF-YSH--IG 478
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 3e-06
Identities = 77/519 (14%), Positives = 149/519 (28%), Gaps = 158/519 (30%)
Query: 25 HSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHRADSM 84
H + E + Y+ + + A++ +D C+ D
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFD-----------------CK---DVQDMP 42
Query: 85 KEVIKLEKLAGIF--PDPDVDAYM---------KAISVEGLEKNLQTDYILKILGLDICA 133
K ++ E++ I D + + + +E+ L+ +Y K L I
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY--KFLMSPIKT 100
Query: 134 DTIVGDP-MRRGVSGGQKKRLTTGELIVGP---TRALFMDEISNGLDSSTTFQIVSFLKH 189
+ P M + Q+ RL + +R ++ L
Sbjct: 101 EQR--QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE------------ 146
Query: 190 LVHITDATALISLLQPAPETFDLFDDVML--MA-EGK--IVYHGPRSY-ICKFFEDCGF- 242
L+PA +V++ + GK + SY + + F
Sbjct: 147 -------------LRPAK-------NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 243 ----RCPERKGVADFLQEVISRKDQEQYWHRKDHPYGY-VSIDQFITKFKTSHLGLKLEE 297
C + V + LQ+++ + D + R DH + I ++
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPN-WTSRSDHSSNIKLRIHS-------------IQA 232
Query: 298 ELAHSFNKSETHKKALSFKKYSLT-----KWELLKA----CATREFLLMKRNSFI--YVF 346
EL KS+ ++ L L + A C LL R + ++
Sbjct: 233 ELRRLL-KSKPYENCL------LVLLNVQNAKAWNAFNLSCKI---LLTTRFKQVTDFLS 282
Query: 347 KSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNGFP-ELNMTASRLAV 405
+T I + +L YL L ++ P L++ A +
Sbjct: 283 AATTTHISLDHHSMTLTPDE-VKSLL-LK-YLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 406 F------YKQRDL------------CFYPA------WAYAI-PASILKVPLSLLESFVWT 440
+K + PA ++ P S +P LL W
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLI-WF 397
Query: 441 SLTYYVIGYSPEVGRFFRQFLLL------FTVHLTSISL 473
+ + V ++ L+ T+ + SI L
Sbjct: 398 DVIKSDV---MVVVNKLHKYSLVEKQPKESTISIPSIYL 433
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 8e-05
Identities = 40/301 (13%), Positives = 79/301 (26%), Gaps = 75/301 (24%)
Query: 546 SGNTTVGRQTLESRGL--NFDSSFYWISIA------ALIGFTVLFNVVFTLALTFLKSPG 597
SG T V S + D +W+++ ++ +L +++ + +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL--EMLQKLLYQIDPNWTSRSD 218
Query: 598 KSRTII-----AYEKYSKLQDQKDGSSG----SD-RDKKHIDA------PLKTTAGPKRG 641
S I + +L K + + ++ K +A L TT R
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT----RF 274
Query: 642 KMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKK-LQLLSDITGTFRPGIL------TA 694
K V F + LL RP L T
Sbjct: 275 KQV-------TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-RPQDLPREVLTTN 326
Query: 695 LMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYC----EQND--- 746
+S ++ I +G + V I E +
Sbjct: 327 PRRLSIIAES-------------IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 747 ------IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG 800
+ P+ + ++ W + + + L +E K S + +P
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQP-KESTISIPS 430
Query: 801 V 801
+
Sbjct: 431 I 431
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 2e-12
Identities = 70/271 (25%), Positives = 112/271 (41%), Gaps = 75/271 (27%)
Query: 645 LPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKT 704
L F+ + FE+V + + + + L D++ T PG AL+G SGAGK+
Sbjct: 47 LRFQKGRIEFENVHF-----------SYADGR-ETLQDVSFTVMPGQTLALVGPSGAGKS 94
Query: 705 TLM-------DVLSGRKTGGIIEG-DIR----------IGGYPKVQHT--FARISGYCEQ 744
T++ D+ SG I+G DI IG P Q T F
Sbjct: 95 TILRLLFRFYDISSGCIR---IDGQDISQVTQASLRSHIGVVP--QDTVLF--------- 140
Query: 745 NDIHSPNI-------TVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY-SLV 796
ND + NI +E + +A +A +++ + +G Y + V
Sbjct: 141 NDTIADNIRYGRVTAGNDE--VEAA-----------AQAAGIHDAIMAFP-EG--YRTQV 184
Query: 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTV 856
G G+ LS +++R+ IA ++ P II +DE TS LD + ++ V RT
Sbjct: 185 GERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTT 242
Query: 857 VCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ H+ S + A D IL+ G I+ G
Sbjct: 243 IVVAHRLST-VVNA--DQILVIKDGCIVERG 270
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 2e-12
Identities = 62/237 (26%), Positives = 97/237 (40%), Gaps = 60/237 (25%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGYPK 730
Q+L DI+ +P + A G SG GK+T+ +G I I G P
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITIDGQP- 65
Query: 731 VQHTFARISGYCEQNDIHSPNITV--EESVIFSAWLR------LSP-----EIDLKTKA- 776
I + S I ++S I + +R L ++
Sbjct: 66 -------IDNI-SLENWRS-QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLA 116
Query: 777 ---EFVNEV---LQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 830
FV + L T VG GV +S QR+RL IA + NP I+ +DE
Sbjct: 117 FARSFVENMPDQLNTE---------VGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEA 166
Query: 831 TSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
T+ LD+ + ++V +A+ ++++ GRT + H+ S I +A D I G+I SG
Sbjct: 167 TASLDSESESMVQKALDSLMK-GRTTLVIAHRLST-IVDA--DKIYFIEKGQITGSG 219
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 4e-12
Identities = 53/209 (25%), Positives = 94/209 (44%), Gaps = 36/209 (17%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGG--IIEGDIRIGGYPK 730
+ L ++ + G ++MG SG+GK+T+++++ G + T G I+ I+
Sbjct: 17 IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDN-IKTNDLDD 74
Query: 731 VQHTFAR---ISGYCEQ--NDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQT 785
+ T R I G+ Q N I P +T E+V + + + + + E L+
Sbjct: 75 DELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLK- 130
Query: 786 IELDGIKYSLVGL--------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837
+ L P + LS Q++R+ IA L NP II D+PT LD++
Sbjct: 131 ---------MAELEERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSK 179
Query: 838 AAAIVMRAVKNV-VETGRTVVCTIHQPSI 865
+M+ +K + E G+TVV H ++
Sbjct: 180 TGEKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 1e-11
Identities = 69/282 (24%), Positives = 112/282 (39%), Gaps = 62/282 (21%)
Query: 628 IDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQY-YVDTPSAMKKRGFNQKKLQLLSDITGT 686
ID + K G L F+++ + Y PS +K++Q+L +
Sbjct: 365 IDNKPSIDSFSKSGH-KPDNIQGNLEFKNIHFSY---PS--------RKEVQILKGLNLK 412
Query: 687 FRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE-------GDIRIGGYPKVQHTFARIS 739
+ G AL+G SG GK+T + +++ G + I G I
Sbjct: 413 VKSGQTVALVGNSGCGKSTTV---------QLMQRLYDPLDGMVSIDGQD--------IR 455
Query: 740 GYCEQNDIHS--PNITV--EESVIFSAWLR--------LSPEIDLKTKAEFVNEVLQTIE 787
++ I V +E V+F+ + +++ + N I
Sbjct: 456 TI----NVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN-AYDFIM 510
Query: 788 L--DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 845
+LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V A
Sbjct: 511 KLPHQFD-TLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA 568
Query: 846 VKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ E GRT + H+ S + A D+I +GG I+ G
Sbjct: 569 LDKARE-GRTTIVIAHRLST-VRNA--DVIAGFDGGVIVEQG 606
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 6e-10
Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 37/226 (16%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGYP- 729
+L ++ + G AL+G SG GK+T++ D ++G + + G
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEI 1097
Query: 730 ---KVQHTFARISGYCEQNDIHSP---NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVL 783
VQ A++ G Q P + ++ E++ + R+ ++ A+ N +
Sbjct: 1098 KQLNVQWLRAQL-GIVSQE----PILFDCSIAENIAYGDNSRVVSYEEIVRAAKEAN-IH 1151
Query: 784 QTIE-L-DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 841
Q I+ L D + VG G LS Q++R+ IA LV P I+ +DE TS LD + +
Sbjct: 1152 QFIDSLPDKYN-TRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKV 1209
Query: 842 VMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
V A+ E GRT + H+ S I A DLI++ G++ G
Sbjct: 1210 VQEALDKARE-GRTCIVIAHRLST-IQNA--DLIVVIQNGKVKEHG 1251
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 2e-11
Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 30/165 (18%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI-IEGDIRIGGYPKVQHTFA 736
LL+ + + G +G GK+TLM ++ + G + + R
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT----------- 497
Query: 737 RISGYCEQN-DIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSL 795
Y E + D + +V + V E + TK + + L IE G +
Sbjct: 498 ---VYVEHDIDGTHSDTSVLDFVF---------ESGVGTKEA-IKDKL--IEF-GFTDEM 541
Query: 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
+ +P +S LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 542 IAMP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTI 860
+ GLS Q+ +L +A P +I +DEPT+ LD + + +A+K E V+
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK---EFEGGVIIIT 955
Query: 861 HQPSIDIFEAF-----DDLILMKNGGRIIYSG 887
H F +++ +K+G
Sbjct: 956 HS------AEFTKNLTEEVWAVKDGRMTPSGH 981
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 58/186 (31%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMT 63
+ G GCGK+TL+ A++ +V G + R +V D ++ +
Sbjct: 466 ICGPNGCGKSTLMRAIANG-----QVDGFPTQEECRTV-YVEH-------DIDGTHSDTS 512
Query: 64 VRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYI 123
V + + + +++K+ KL + F D + + A+S
Sbjct: 513 VLDFV-----FESGVGTKEAIKD--KLIEFG--FTDEMIAMPISALS------------- 550
Query: 124 LKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQI 183
GG K +L ++ L +DE +N LD+ +
Sbjct: 551 -----------------------GGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL 587
Query: 184 VSFLKH 189
V++L
Sbjct: 588 VNYLNT 593
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 5e-04
Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 18/138 (13%)
Query: 671 GFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730
+ ++DI A++G +GAGK+TL++VL+G G++
Sbjct: 680 QYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYT----- 732
Query: 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQT----- 785
H RI Y +Q+ ++++ R D +T ++ +
Sbjct: 733 --HENCRI-AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAM 789
Query: 786 ---IELDGIKYSLVGLPG 800
+++G + G+
Sbjct: 790 NKIFKIEGTPRRIAGIHS 807
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 1e-10
Identities = 55/231 (23%), Positives = 89/231 (38%), Gaps = 46/231 (19%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTGGIIEGDIRIGGYP- 729
Q+L +T T PG +TAL+G +G+GK+T+ G+ + + G P
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPL 83
Query: 730 -KVQHTFAR--ISGYCEQNDIHSP---NITVEESVIFSAWLRLSP-EIDLKTKA----EF 778
+ H + + Q P + E++ + + EI +F
Sbjct: 84 VQYDHHYLHTQV-AAVGQE----PLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDF 138
Query: 779 VNEVLQTIELDGIKY-SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837
++ Q Y + VG G LS QR+ + +A L+ P ++ +D TS LDA
Sbjct: 139 ISGFPQ-------GYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNATSALDAG 190
Query: 838 AAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
V R + E RTV+ Q S+ A IL G + G
Sbjct: 191 NQLRVQRLLYESPEWASRTVLLITQQLSL-AERA--HHILFLKEGSVCEQG 238
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 66/259 (25%), Positives = 112/259 (43%), Gaps = 64/259 (24%)
Query: 652 LTFEDVQY-YVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLM--- 707
+ F DV + Y + + L I G AL+G +G+GK+T+
Sbjct: 18 IEFSDVNFSYPKQTNH-----------RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
Query: 708 ----DVLSGRKTGGIIEGDIRIGGYP--KV-QHTFARISGYCEQ-----NDIHSPNI--- 752
D EGDI+IGG K +++ I G Q N+ NI
Sbjct: 67 YRFYDA----------EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYG 116
Query: 753 ----TVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808
T EE + A TK+ + + ++ + ++VG G+ LS +
Sbjct: 117 KLDATDEE--VIKA-----------TKSAQLYDFIEALP-KKWD-TIVGNKGMK-LSGGE 160
Query: 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIF 868
R+R+ IA L+ +P I+ DE TS LD++ + +AV+++ + RT++ H+ S I
Sbjct: 161 RQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-IS 218
Query: 869 EAFDDLILMKNGGRIIYSG 887
A + I++ N G+I+ G
Sbjct: 219 SA--ESIILLNKGKIVEKG 235
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-10
Identities = 70/317 (22%), Positives = 130/317 (41%), Gaps = 54/317 (17%)
Query: 584 VVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKM 643
V ++ L P KS T ++ Q G + +D+ + G +
Sbjct: 285 TVVFSSMIALMRPLKSLT----NVNAQFQR---GMAACQTLFAILDSEQEKDEGKR---- 333
Query: 644 VLPFEPLT--LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGA 701
+ T L F +V + + +++ L +I G AL+G SG+
Sbjct: 334 --VIDRATGDLEFRNVTF-----------TYPGREVPALRNINLKIPAGKTVALVGRSGS 380
Query: 702 GKTTLM-------DVLSGRKTGGIIEGDIRIGGYPKVQHTFA---RISGYCEQNDIHSPN 751
GK+T+ D+ G I + G+ ++T A Q ++H N
Sbjct: 381 GKSTIASLITRFYDIDEGH---------ILMDGHDLREYTLASLRNQVALVSQ-NVHLFN 430
Query: 752 ITVEESVIFSAWLRLSPE-IDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810
TV ++ ++ S E I+ + + + + ++ +G+ ++G GV LS QR+
Sbjct: 431 DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMD-NGLDT-IIGENGVL-LSGGQRQ 487
Query: 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEA 870
R+ IA L+ + I+ +DE TS LD + + A+ + + RT + H+ S I +A
Sbjct: 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-IEQA 545
Query: 871 FDDLILMKNGGRIIYSG 887
D I++ G I+ G
Sbjct: 546 --DEIVVVEDGIIVERG 560
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-10
Identities = 71/317 (22%), Positives = 127/317 (40%), Gaps = 54/317 (17%)
Query: 584 VVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKM 643
V A+ L P K+ T S+ Q G + + + GK
Sbjct: 285 TVVFSAMFGLMRPLKALT----SVTSEFQR---GMAACQT----LFGLMDLETERDNGKY 333
Query: 644 VLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGK 703
+ +DV + + K+ LS ++ + G AL+G SG+GK
Sbjct: 334 EAERVNGEVDVKDVTF-----------TYQGKEKPALSHVSFSIPQGKTVALVGRSGSGK 382
Query: 704 TTLM-------DVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS-----GYCEQNDIHSPN 751
+T+ DV SG I + G+ + + Q ++H N
Sbjct: 383 STIANLFTRFYDVDSGS---------ICLDGHD--VRDYKLTNLRRHFALVSQ-NVHLFN 430
Query: 752 ITVEESVIFSAWLRLSPE-IDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810
T+ ++ ++A + E I+ + E ++ + G+ ++G G S LS QR+
Sbjct: 431 DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMP-QGLDT-VIGENGTS-LSGGQRQ 487
Query: 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEA 870
R+ IA L+ + ++ +DE TS LD + + A+ + + +TV+ H+ S I +A
Sbjct: 488 RVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST-IEQA 545
Query: 871 FDDLILMKNGGRIIYSG 887
D IL+ + G II G
Sbjct: 546 --DEILVVDEGEIIERG 560
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 44/204 (21%), Positives = 90/204 (44%), Gaps = 40/204 (19%)
Query: 694 ALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT--FARISGYCEQNDIHSPN 751
L+G +GAGK+ +++++G G++R+ G + R G+ Q+ P+
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGAD-ITPLPPERRGIGFVPQDYALFPH 84
Query: 752 ITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSG-----LST 806
++V ++ + LR ++ + V E+ + +G+ + LS
Sbjct: 85 LSVYRNIAYG--LRNVERVERDRR---VREMAE----------KLGIAHLLDRKPARLSG 129
Query: 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRA-VKNV-VETGRTVVCTIHQ 862
+R+R+ +A LV P ++ +DEP S +D + + ++ V E ++ H
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV---LMEELRFVQREFDVPILHVTH- 185
Query: 863 PSIDIFEAF---DDLILMKNGGRI 883
D+ EA D++ +M GRI
Sbjct: 186 ---DLIEAAMLADEVAVM-LNGRI 205
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 6e-10
Identities = 44/222 (19%), Positives = 88/222 (39%), Gaps = 47/222 (21%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 737
L DI G L A+ G +GAGKT+L+ ++ G + EG I+ G R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 738 ISGYCEQNDIHSP---NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQT------IEL 788
IS +C Q + T++E++I ++ V++ I
Sbjct: 101 IS-FCSQ----NSWIMPGTIKENIIGVSY-----------DEYRYRSVIKACQLEEDISK 144
Query: 789 --DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 846
+ ++G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 145 FAEKDN-IVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 202
Query: 847 KNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
+ +T + + ++ + D ++++ G + G
Sbjct: 203 VCKLMANKTRILVTSK--MEHLKKADKILILHE-GSSYFYGT 241
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 54/150 (36%)
Query: 6 GHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVR 65
G G GKT+LL + G+L G++ ++G ++ SQ I T++
Sbjct: 71 GSTGAGKTSLLMMIMGELE---PSEGKIKHSG----------RISFCSQNSW-IMPGTIK 116
Query: 66 ETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILK 125
E I G D + Y I LE+++
Sbjct: 117 ENI--------IGVSYDEYR-------------------YRSVIKACQLEEDIS---KFA 146
Query: 126 ILGLDICADTIVGDPMRRGV--SGGQKKRL 153
D + ++G+ G+ SGGQ+ R+
Sbjct: 147 --EKD---NIVLGE---GGITLSGGQRARI 168
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 21/164 (12%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-HTFARI 738
+ ++ R G + L+G SG+GKTT++ +++G + +GD+ IGG R
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRN 88
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
G QN ++TV ++V F + P+ ++ + V E+L+ + L
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLR----------FMRL 135
Query: 799 PGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837
+ LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 136 ESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 55/244 (22%), Positives = 94/244 (38%), Gaps = 68/244 (27%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 737
L+DI+ + PG + ++G SG GKTTL+ L+G + G+I + G
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD----SGEISLSG--------KT 67
Query: 738 ISGYC-----EQNDIHS--------PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQ 784
I + + P++TV ++ + + + + +L
Sbjct: 68 IFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQR---IEAML- 123
Query: 785 TIELDGIKYSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--R 837
L G+ ++G LS Q++R +A L +P +I +DEP S LD R
Sbjct: 124 ---------ELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLR 174
Query: 838 AAAIVMRA-VKNVV-ETGRTVVCTIHQPSIDIFEAF---DDLILMKNGGRI--------I 884
+R + + G++ V H D EA D + +M GRI +
Sbjct: 175 RQ---IREDMIAALRANGKSAVFVSH----DREEALQYADRIAVM-KQGRILQTASPHEL 226
Query: 885 YSGP 888
Y P
Sbjct: 227 YRQP 230
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 3e-09
Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 48/223 (21%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 737
L+ IT + G L A++G G GK++L+ L K EG + I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 738 ISGYCEQNDIHSP---NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL------ 788
++ Y Q N ++ E+++F + + + V+Q L
Sbjct: 68 VA-YVPQ----QAWIQNDSLRENILFG----------CQLEEPYYRSVIQACALLPDLEI 112
Query: 789 --DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 846
G + + +G GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 113 LPSGDR-TEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
Query: 847 --KNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ +T + H + D +I+M G+I G
Sbjct: 171 IGPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSG-GKISEMG 210
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 40/153 (26%), Positives = 56/153 (36%), Gaps = 59/153 (38%)
Query: 6 GHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVR 65
G GCGK++LLSAL ++ KV G V+ G + AY+ Q I ++R
Sbjct: 38 GQVGCGKSSLLSALLAEMD---KVEGHVAIKG----------SVAYVPQQAW-IQNDSLR 83
Query: 66 ETIDFSARCQGTGHRADSMKEVIK---LEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDY 122
E I F G + VI+ L I P D
Sbjct: 84 ENILF-----GCQLEEPYYRSVIQACALLPDLEILPSGD--------------------- 117
Query: 123 ILKILGLDICADTIVGDPMRRGV--SGGQKKRL 153
T +G+ +GV SGGQK+R+
Sbjct: 118 -----------RTEIGE---KGVNLSGGQKQRV 136
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 4e-09
Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 46/221 (20%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQHTFAR 737
L DI G L A+ G +GAGKT+L+ ++ G + EG I+ G R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 738 ISGYCEQNDIHSP---NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL------ 788
IS +C Q T++E++IF + V++ +L
Sbjct: 71 IS-FCSQ----FSWIMPGTIKENIIF----------GVSYDEYRYRSVIKACQLEEDISK 115
Query: 789 --DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 846
+ ++G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 116 FAEKDN-IVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 173
Query: 847 KNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ +T + + ++ + D ++++ G + G
Sbjct: 174 VCKLMANKTRILVTSK--MEHLKKADKILILHE-GSSYFYG 211
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 7e-06
Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 63/155 (40%)
Query: 6 GHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVR 65
G G GKT+LL + G+L G++ ++G ++ SQ+ I T++
Sbjct: 41 GSTGAGKTSLLMMIMGELE---PSEGKIKHSG----------RISFCSQFSW-IMPGTIK 86
Query: 66 ETIDFSARCQGTGHRADSMK--EVIK---LEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
E I F G D + VIK LE+ F + D
Sbjct: 87 ENIIF-------GVSYDEYRYRSVIKACQLEEDISKFAEKD------------------- 120
Query: 121 DYILKILGLDICADTIVGDPMRRGV--SGGQKKRL 153
+ ++G+ G+ SGGQ+ R+
Sbjct: 121 -------------NIVLGE---GGITLSGGQRARI 139
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 8e-09
Identities = 58/233 (24%), Positives = 106/233 (45%), Gaps = 33/233 (14%)
Query: 673 NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG-IIEGDIRIGGYP 729
+ +Q L++++ G + ++G SGAGK+TL+ ++ R T G ++ +
Sbjct: 37 GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLS 96
Query: 730 KVQHTFARIS-GYCEQ--NDIHSPNITVEESVIFSAWLRLS--PEIDLKTKAEFVNEVLQ 784
+ + T AR G Q N + S TV +V L L P+ ++K + V E+L
Sbjct: 97 ESELTKARRQIGMIFQHFNLLSS--RTVFGNVALP--LELDNTPKDEVKRR---VTELLS 149
Query: 785 TIELDGIKYSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 839
LVGL S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 150 ----------LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATT 199
Query: 840 AIVMRAVKNV-VETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891
++ +K++ G T++ H+ + + D + ++ N G +I + +
Sbjct: 200 RSILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISN-GELIEQDTVSE 250
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 29/186 (15%)
Query: 672 FNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731
F + K+ L ++ G ++G SGAGKTT M +++G G++ ++
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDD--RL 68
Query: 732 QHTFARISGYCEQNDIHS--------PNITVEESVIFSAWLRLSP--EIDLKTKAEFVNE 781
+ ++ E I PN+T E++ F EI + V E
Sbjct: 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-----VEE 123
Query: 782 VLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAA 839
V + +++ + L P LS Q++R+ +A LV +PS++ +DEP S LDA R +
Sbjct: 124 VAKILDIHHV---LNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178
Query: 840 AIVMRA 845
RA
Sbjct: 179 ---ARA 181
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 5e-08
Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 51/204 (25%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE--GDIRIGGYPKVQHTFAR 737
L +I+ + PG L+G +G+GK+TL+ ++ G+I+I G
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLR-----LLNTEGEIQIDGV--------- 82
Query: 738 ISGYCEQNDIHS-------PNITV--EESVIFSAWLR--LSPEIDLKTKAEFVNEVLQTI 786
S V ++ IFS R L P + E + +V +
Sbjct: 83 --------SWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDP-NAAHSDQE-IWKVADEV 132
Query: 787 ELDGIKYSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837
L + + P G LS ++ + +A +++ I+ +DEP++ LD
Sbjct: 133 GL---RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189
Query: 838 AAAIVMRAVKNVVETGRTVVCTIH 861
I+ R +K V
Sbjct: 190 TYQIIRRTLKQ--AFADCTVILCE 211
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 60/236 (25%), Positives = 94/236 (39%), Gaps = 52/236 (22%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTF 735
L++L I R G + ++G SG+GK+T + L+ + EG+I I G
Sbjct: 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKA--- 90
Query: 736 ARISGYCEQNDIHS---------------PNITVEESVIFS-AWLRLSPEIDLKTKAEFV 779
+ +++ P++TV ++ + +R P + KA
Sbjct: 91 -------KDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAM-- 141
Query: 780 NEVLQTIELDGIKYSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834
E+L VGL LS Q +R+ IA L P I+ DEPTS L
Sbjct: 142 -ELLDK----------VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 190
Query: 835 DARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIF--EAFDDLILMKNGGRIIYSGP 888
D V+ +K + G T+V H+ F E D ++ M +GG II G
Sbjct: 191 DPEMVGEVLSVMKQLANEGMTMVVVTHEMG---FAREVGDRVLFM-DGGYIIEEGK 242
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 3e-07
Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 14/127 (11%)
Query: 769 EIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVEL------VANP 822
E +E V + + + P ++ LS +R L +A L
Sbjct: 215 EFTEGKYSEVVVRAEENKVRLFVVWEGKERP-LTFLSGGERIALGLAFRLAMSLYLAGEI 273
Query: 823 SIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK---- 878
S++ +DEPT LD ++ ++ ++ V+ H ++ +A D +I +
Sbjct: 274 SLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVIRISLENG 331
Query: 879 -NGGRII 884
+ ++
Sbjct: 332 SSKVEVV 338
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 4e-07
Identities = 50/238 (21%), Positives = 97/238 (40%), Gaps = 44/238 (18%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP-KVQHT 734
++L ++ R G + +++G SG+GK+T + ++ + EG I + G +
Sbjct: 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRD 75
Query: 735 FARISGYCEQNDIHS---------------PNITVEESVIFS-AWLRLSPEIDLKTKAEF 778
++N + ++TV E+V+ + + + D + +A
Sbjct: 76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERAL- 134
Query: 779 VNEVLQTIELDGIKYSLVGLPGV------SGLSTEQRKRLTIAVELVANPSIIFMDEPTS 832
+ L VG+ LS Q++R++IA L P ++ DEPTS
Sbjct: 135 --KYLAK----------VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTS 182
Query: 833 GLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIF--EAFDDLILMKNGGRIIYSGP 888
LD V+R ++ + E G+T+V H+ F +I + + G+I G
Sbjct: 183 ALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG---FARHVSSHVIFL-HQGKIEEEGD 236
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 5e-07
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTI- 860
LS Q++RL+IA + NP I+ +DE TS LD + +I+ A+ + + RT T+
Sbjct: 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRT---TLI 531
Query: 861 --HQPSIDIFEAFDDLILMKNGGRIIYSG 887
H+ S I A D I++ G I+ +G
Sbjct: 532 VAHRLST-ITHA--DKIVVIENGHIVETG 557
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 6e-07
Identities = 25/146 (17%), Positives = 54/146 (36%), Gaps = 22/146 (15%)
Query: 751 NITVEESV-IFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809
+ E + IF+ E +E V + + + P ++ LS +R
Sbjct: 12 SKIGELASEIFA-------EFTEGKYSEVVVRAEENKVRLFVVWEGKERP-LTFLSGGER 63
Query: 810 KRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQP 863
L +A L S++ +DEPT LD ++ ++ ++ V+ H
Sbjct: 64 IALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 123
Query: 864 SIDIFEAFDDLILM-----KNGGRII 884
++ +A D +I + + ++
Sbjct: 124 --ELKDAADHVIRISLENGSSKVEVV 147
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 6e-07
Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 38/171 (22%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 739
L +++ G ++G +GAGKT +++++G G I + G V
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKD-VTDLSP--- 69
Query: 740 GYCEQNDIHS--------PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI 791
E++DI P++ V++++ F ++ + V +
Sbjct: 70 ---EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK------DPKRVLDTA-------- 112
Query: 792 KYSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837
+ + + LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 113 --RDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 48/170 (28%)
Query: 695 LMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHS----- 749
L+G SG+GK+TL+ ++G G I K ++
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDE--KDV------------TELPPKDRNV 77
Query: 750 ----------PNITVEESVIFSAWLRLSP--EIDLKTKAEFVNEVLQTIELDGIKYSLVG 797
P++TV +++ F LR +P EID K V EV + + +D + L
Sbjct: 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK-----VREVAKMLHIDKL---LNR 129
Query: 798 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRA 845
P LS Q++R+ IA LV P ++ +DEP S LDA R +RA
Sbjct: 130 YP--WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIH 861
LS QR+ L I +ANP I+ +DE TS +D + + A+ ++E G+T + H
Sbjct: 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTSIIIAH 548
Query: 862 QPSIDIFEAFDDLILMKNGGRIIYSG 887
+ + I A DLI++ G I+ G
Sbjct: 549 RLNT-IKNA--DLIIVLRDGEIVEMG 571
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 48/170 (28%)
Query: 695 LMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHS----- 749
L+G SG GKTT + +++G + EG I G + +
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGD--RDV------------TYLPPKDRNI 85
Query: 750 ----------PNITVEESVIFSAWLRLSP--EIDLKTKAEFVNEVLQTIELDGIKYSLVG 797
P++TV E++ F ++ P EID + V + ++++ + L
Sbjct: 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAELLQIEEL---LNR 137
Query: 798 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRA 845
P LS QR+R+ +A +V P ++ MDEP S LDA R A MRA
Sbjct: 138 YPA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 46/170 (27%), Positives = 70/170 (41%), Gaps = 48/170 (28%)
Query: 695 LMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHS----- 749
L+G SG GKTT + +L+G G+I + NDI
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDD--VLV------------NDIPPKYREV 77
Query: 750 ----------PNITVEESVIFSAWLRLSP--EIDLKTKAEFVNEVLQTIELDGIKYSLVG 797
P++TV E++ F R E++ + V E+ + + +D + L
Sbjct: 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKR-----VVEIARKLLIDNL---LDR 129
Query: 798 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRA 845
P LS Q++R+ +A LV P ++ DEP S LDA R MRA
Sbjct: 130 KPT--QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI---MRA 174
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 1e-05
Identities = 52/230 (22%), Positives = 86/230 (37%), Gaps = 51/230 (22%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGR-KTGGIIEGDIRIGGYPKV 731
LS + + +PG L A++G +G+GK+TLM D GR + + D+R
Sbjct: 359 LSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL---DVR--TVK-- 411
Query: 732 QHTFARISGYCEQN------DIHS------PNITVEESVIFSAWLRLSPEIDLKTKAEFV 779
Q I + T +E I A + +F+
Sbjct: 412 LKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDE--IVEA-------AKIAQIHDFI 462
Query: 780 NEVLQTIELDGIKYSLVGLPG--VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837
+ + + S V G SG Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 463 ISLPEGYD------SRVERGGRNFSG---GQKQRLSIARALVKKPKVLILDDCTSSVDPI 513
Query: 838 AAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
++ +K T I Q A D IL+ + G++ G
Sbjct: 514 TEKRILDGLKR--YTKGCTTFIITQKIPTALLA--DKILVLHEGKVAGFG 559
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 53/163 (32%), Positives = 74/163 (45%), Gaps = 28/163 (17%)
Query: 695 LMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDI----HS- 749
L+G SG GKTT + +++G + G I IG V I + DI S
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGD-KLVADPEKGIFVPPKDRDIAMVFQSY 90
Query: 750 ---PNITVEESVIFSAWLRLSP--EIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGL 804
P++TV +++ F LR P EID + V EV + + L + L P L
Sbjct: 91 ALYPHMTVYDNIAFPLKLRKVPRQEIDQR-----VREVAELLGLTEL---LNRKPR--EL 140
Query: 805 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRA 845
S QR+R+ + +V P + MDEP S LDA R MRA
Sbjct: 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 4e-05
Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 32/194 (16%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE-GDIRIGGYPKVQ 732
+ + I G + L+G +GAGKTT + ++G R G I I P
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP--A 75
Query: 733 HTFARISGYCEQNDIHSP-------NITVEESVIFSAWLRLSPEIDLKTKAEFVNE---V 782
H R G P +TV E+++ A+ R E +K E++
Sbjct: 76 HVINR-MGIA-----LVPEGRRIFPELTVYENLMMGAYNRKDKE-GIKRDLEWIFSLFPR 128
Query: 783 LQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 842
L+ E L G LS +++ L I L++ P ++ MDEP+ GL + V
Sbjct: 129 LK--ER---LKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 843 MRAVKNVVETGRTV 856
++ + + G T+
Sbjct: 179 FEVIQKINQEGTTI 192
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 9e-05
Identities = 52/211 (24%), Positives = 79/211 (37%), Gaps = 53/211 (25%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG---------- 727
+L + G + ALMG +GAGK+TL +L+G + G+I + G
Sbjct: 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE 76
Query: 728 -----------YPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLS------PEI 770
YP + G +T+ F LRL+ E+
Sbjct: 77 RARKGLFLAFQYP------VEVPG-----------VTIAN---F---LRLALQAKLGREV 113
Query: 771 DLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 830
+ AEF +V + +EL S + G S ++KR I LV P+ +DE
Sbjct: 114 GV---AEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDET 170
Query: 831 TSGLDARAAAIVMRAVKNVVETGRTVVCTIH 861
SGLD A +V R V + + H
Sbjct: 171 DSGLDIDALKVVARGVNAMRGPNFGALVITH 201
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1252 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-29 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-15 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-29 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-13 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 9e-28 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 7e-19 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-11 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-27 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-13 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-27 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 4e-13 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-26 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-15 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-26 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 7e-14 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-26 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 7e-17 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-25 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-12 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-25 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-10 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-10 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-24 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 7e-11 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-23 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-14 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-22 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-12 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 6e-22 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-12 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-20 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-10 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 7e-11 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 6e-17 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-10 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-09 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-04 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 0.001 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 8e-04 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 116 bits (291), Expect = 2e-29
Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 13/222 (5%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQH 733
+ + L ++ + G +T ++G +G+GK+TL++V++G + G + + + +
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 75
Query: 734 TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEID-------LKTKAEFVNEVLQTI 786
+ Q +TV E+++ ++ + + E V + + +
Sbjct: 76 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 135
Query: 787 ELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 846
E + + G LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 136 EFLKLSHLYDRKAG--ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHV 193
Query: 847 KNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
+ G T + H+ + D L +M N G+II G
Sbjct: 194 LELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGR 233
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 76.2 bits (187), Expect = 1e-15
Identities = 46/230 (20%), Positives = 77/230 (33%), Gaps = 35/230 (15%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNG----YRLDEFVPQKTSAYISQYDLHI 59
++G G GK+TL++ ++G L G V + + + Q +
Sbjct: 35 IIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 91
Query: 60 AEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQ 119
EMTV E + C P + K + E +
Sbjct: 92 KEMTVLENLLIGEICP---------------------GESPLNSLFYKKWIPKEEEMVEK 130
Query: 120 TDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSST 179
IL+ L L D G+ +SGGQ K + G ++ + + MDE G+
Sbjct: 131 AFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 185
Query: 180 TFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229
I + + L T LI + D + +M G+I+ G
Sbjct: 186 AHDIFNHVLEL-KAKGITFLII-EHRLDIVLNYIDHLYVMFNGQIIAEGR 233
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 114 bits (286), Expect = 6e-29
Identities = 54/230 (23%), Positives = 102/230 (44%), Gaps = 17/230 (7%)
Query: 668 KKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIE-GDIR 724
K ++ + L ++ + G ++MG SG+GK+T+++++ + T G + +I+
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 725 IGGYPKVQHTFARIS--GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEV 782
+ T R G+ Q P +T E+V + + E
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMS---GEERRKRA 125
Query: 783 LQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 842
L+ +++ ++ + LS Q++R+ IA L NP II D+PT LD++ +
Sbjct: 126 LECLKMAELEERFANHK-PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKI 184
Query: 843 MRAVKNVV-ETGRTVVCTIHQPSIDIFEA--FDDLILMKNGGRIIYSGPL 889
M+ +K + E G+TVV H DI A + +I +K+ G + L
Sbjct: 185 MQLLKKLNEEDGKTVVVVTH----DINVARFGERIIYLKD-GEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 69.5 bits (170), Expect = 1e-13
Identities = 33/235 (14%), Positives = 78/235 (33%), Gaps = 51/235 (21%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS-------AYISQYD 56
++G G GK+T+L+ + + GEV + + ++ + + ++ Q
Sbjct: 36 IMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92
Query: 57 LHIAEMTVRETIDFSARCQGTGH--RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGL 114
I +T E ++ + G + K ++ K+A + + + +
Sbjct: 93 NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL-EERFANHKPNQL----- 146
Query: 115 EKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNG 174
SGGQ++R+ + + D+ +
Sbjct: 147 -------------------------------SGGQQQRVAIARALANNPPIILADQPTGA 175
Query: 175 LDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229
LDS T +I+ LK L T ++ + ++ + +G++
Sbjct: 176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTHD--INVARFGERIIYLKDGEVEREEK 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 111 bits (278), Expect = 9e-28
Identities = 49/218 (22%), Positives = 94/218 (43%), Gaps = 20/218 (9%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-HT 734
++ + T + G L+G SG GKTT + +++G + EG I G
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPP 75
Query: 735 FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYS 794
R Q+ P++TV E++ F ++ P+ ++ + + ++++ +
Sbjct: 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR---WAAELLQIEELLNR 132
Query: 795 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV-ETG 853
+ LS QR+R+ +A +V P ++ MDEP S LDA+ + +K + +
Sbjct: 133 YP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK 187
Query: 854 RTVVCTIHQPSIDIFEAF---DDLILMKNGGRIIYSGP 888
T + H D EA D + +M G+++ G
Sbjct: 188 VTTIYVTH----DQVEAMTMGDRIAVMNR-GQLLQIGS 220
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 85.2 bits (211), Expect = 7e-19
Identities = 47/252 (18%), Positives = 87/252 (34%), Gaps = 52/252 (20%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ-KTSAYISQYDLHIAEM 62
LLG GCGKTT L ++G + G + + + P+ + + + Q M
Sbjct: 37 LLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM 93
Query: 63 TVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDY 122
TV E I F + + E + + +
Sbjct: 94 TVYENIAFPLKIKKFPKD----------------------------------EIDKRVRW 119
Query: 123 ILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQ 182
++L ++ + +SGGQ++R+ IV L MDE + LD+
Sbjct: 120 AAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA 174
Query: 183 IVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDCGF 242
+ + +K L T + E + D + +M G+++ G + + +
Sbjct: 175 MRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEV--------Y 225
Query: 243 RCPERKGVADFL 254
P VA F+
Sbjct: 226 LRPNSVFVATFI 237
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 110 bits (276), Expect = 1e-27
Identities = 45/218 (20%), Positives = 86/218 (39%), Gaps = 18/218 (8%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQH 733
+ + I G + L+G +GAGKTT + ++G R G I + +
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 734 TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY 793
+ P +TV E+++ A+ R E +K E++ + L
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE-GIKRDLEWIFSLFP--RLKERLK 134
Query: 794 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETG 853
L G LS +++ L I L++ P ++ MDEP+ GL + V ++ + + G
Sbjct: 135 QLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG 189
Query: 854 RTVVCTIHQPSIDIFEAF---DDLILMKNGGRIIYSGP 888
T++ + A +++ G+I+ G
Sbjct: 190 TTILLVEQ----NALGALKVAHYGYVLET-GQIVLEGK 222
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 63.8 bits (155), Expect = 1e-11
Identities = 45/227 (19%), Positives = 78/227 (34%), Gaps = 42/227 (18%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHS-LKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEM 62
L+G G GKTT LSA++G + K+ + + + A + + E+
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96
Query: 63 TVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDY 122
TV E + A +R D LE + +FP
Sbjct: 97 TVYENLMMGAY-----NRKDKEGIKRDLEWIFSLFP------------------------ 127
Query: 123 ILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQ 182
L + G +SGG+++ L G ++ + L MDE S GL +
Sbjct: 128 -----RLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSE 177
Query: 183 IVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229
+ ++ + L+ Q A + ++ G+IV G
Sbjct: 178 VFEVIQKINQEGTTILLVE--QNALGALKVAHYGYVLETGQIVLEGK 222
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 111 bits (278), Expect = 2e-27
Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 20/209 (9%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS 739
L +I G + A+ G +G+GKT+L+ ++ G EG I+ G R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 740 GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP 799
+C Q P T++E++IF E K+ + + +++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCT 859
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 860 IHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
+ + +A D IL+ + G + G
Sbjct: 215 TSKMEH-LRKA--DKILILHQGSSYFYGT 240
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.7 bits (173), Expect = 1e-13
Identities = 48/268 (17%), Positives = 86/268 (32%), Gaps = 60/268 (22%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
M + G G GKT+LL + G+L S G + ++G F Q I
Sbjct: 64 MLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--VSFCSQ---------FSWIM 109
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
T++E I F K V+K +L
Sbjct: 110 PGTIKENIIFGVSYDE-----YRYKSVVKACQLQ-------------------------- 138
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
I +T++G+ +SGGQ+ R++ + +D LD T
Sbjct: 139 ---QDITKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE 194
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS--------Y 232
Q+ + + T ++ + E D ++++ +G ++G S +
Sbjct: 195 EQVFESCVCKLM-ANKTRILVTSK--MEHLRKADKILILHQGSSYFYGTFSELQSLRPDF 251
Query: 233 ICKFFEDCGFRCPERKGVADFLQEVISR 260
K F + + L E + R
Sbjct: 252 SSKLMGYDTFDQFTEERRSSILTETLRR 279
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 109 bits (275), Expect = 3e-27
Identities = 52/251 (20%), Positives = 98/251 (39%), Gaps = 23/251 (9%)
Query: 641 GKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSG 700
GK V+ L F +V + + +++ L +I G AL+G SG
Sbjct: 3 GKRVIDRATGDLEFRNVTF-----------TYPGREVPALRNINLKIPAGKTVALVGRSG 51
Query: 701 AGKTTLMDVLSGRKTGGIIEGDIRIGGYP---KVQHTFARISGYCEQNDIHSPNITVEES 757
+GK+T+ +++ I EG I + G+ + QN +
Sbjct: 52 SGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNI 109
Query: 758 VIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVE 817
+I+ +A + + I + LS QR+R+ IA
Sbjct: 110 AYARTEEYSREQIE---EAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 166
Query: 818 LVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILM 877
L+ + I+ +DE TS LD + + A+ + + RT + H+ S E D+++++
Sbjct: 167 LLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVV 223
Query: 878 KNGGRIIYSGP 888
++ G I+ G
Sbjct: 224 ED-GIIVERGT 233
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 68.7 bits (168), Expect = 4e-13
Identities = 45/233 (19%), Positives = 94/233 (40%), Gaps = 46/233 (19%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYIS--QYDLH 58
L+G G GK+T+ S ++ G + +G+ L E+ ++ ++H
Sbjct: 43 TVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVH 99
Query: 59 IAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNL 118
+ TV I ++ S +++ + ++A + ++ L
Sbjct: 100 LFNDTVANNIAYA------RTEEYSREQIEEAARMAYAMDF-----------INKMDNGL 142
Query: 119 QTDYILKILGLDICADTIVGDPMRRGV--SGGQKKRLTTGELIVGPTRALFMDEISNGLD 176
DTI+G GV SGGQ++R+ ++ + L +DE ++ LD
Sbjct: 143 ---------------DTIIG---ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 184
Query: 177 SSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229
+ + I + L L + T+L+ + T + D+++++ +G IV G
Sbjct: 185 TESERAIQAALDELQK--NRTSLVIAHR--LSTIEQADEIVVVEDGIIVERGT 233
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 107 bits (269), Expect = 1e-26
Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 19/228 (8%)
Query: 668 KKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG 727
K + +Q L++++ G + ++G SGAGK+TL+ ++ + EG + + G
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDG 66
Query: 728 Y------PKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNE 781
R G Q+ + TV +V L +P+ ++K + E
Sbjct: 67 QELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVT---E 123
Query: 782 VLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 841
+L + L S S LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 124 LLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 842 VMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
++ +K++ G T++ H+ + + D + ++ N G +I
Sbjct: 179 ILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISN-GELIEQDT 224
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 74.2 bits (182), Expect = 4e-15
Identities = 46/256 (17%), Positives = 89/256 (34%), Gaps = 57/256 (22%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS------AYISQYDL 57
++G G GK+TL+ ++ + G V +G L + + I Q+
Sbjct: 36 VIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92
Query: 58 HIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKN 117
++ TV + T + + + V +L
Sbjct: 93 LLSSRTVFGNVALPLELDNTP-KDEVKRRVTEL--------------------------- 124
Query: 118 LQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDS 177
L ++GL D+ + +SGGQK+R+ + + L DE ++ LD
Sbjct: 125 ------LSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDP 173
Query: 178 STTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFF 237
+TT I+ LK + T L+ + + D V +++ G+++ S +
Sbjct: 174 ATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEV---- 228
Query: 238 EDCGFRCPERKGVADF 253
F P+ F
Sbjct: 229 ----FSHPKTPLAQKF 240
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 107 bits (268), Expect = 2e-26
Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 14/215 (6%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGGIIEGDIRIGGYPKVQH 733
K ++L I+ G + L+G +GAGKTT + ++S + + GI+ + + H
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEPH 71
Query: 734 TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY 793
++ Y + N+ E + F A S +++ E + L
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE---RATEIAGLGEKIK 128
Query: 794 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETG 853
V S S ++L IA L+ NP + +DEPTSGLD A V + +K + G
Sbjct: 129 DRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 183
Query: 854 RTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
T++ + H ++ D + L+ N G I+ +G
Sbjct: 184 LTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 70.4 bits (172), Expect = 7e-14
Identities = 48/257 (18%), Positives = 80/257 (31%), Gaps = 54/257 (21%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ--KTSAYISQYDLHIAE 61
L+G G GKTT L +S + S SG V+ G + E + K +Y+ +
Sbjct: 33 LIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN 89
Query: 62 MTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTD 121
M E + F A + E +
Sbjct: 90 MQGIEYLRFVAGFYASSSS----------------------------------EIEEMVE 115
Query: 122 YILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTF 181
+I GL V S G ++L ++ R +DE ++GLD
Sbjct: 116 RATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAR 170
Query: 182 QIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDCG 241
++ LK + S E L D + L+ G IV G +
Sbjct: 171 EVRKILKQASQEGLTILVSS--HNMLEVEFLCDRIALIHNGTIVETGTVEEL-------- 220
Query: 242 FRCPERKGVADFLQEVI 258
+ + + + +EV+
Sbjct: 221 KERYKAQNIEEVFEEVV 237
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 106 bits (267), Expect = 3e-26
Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 22/239 (9%)
Query: 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS 711
+ + V + +N + +L DI + G A +G+SG GK+TL++++
Sbjct: 17 IDIDHVSFQ-----------YNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 65
Query: 712 GRKTGGIIEGDIRIGGYP--KVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPE 769
+ G I I G+ R Q D + TV+E+++ E
Sbjct: 66 RFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEE 123
Query: 770 IDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 829
+ K ++ + + G + VG GV LS Q++RL+IA + NP I+ +DE
Sbjct: 124 VVEAAKMANAHDFIMNLP-QGYD-TEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDE 180
Query: 830 PTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
TS LD + +I+ A+ + + RT + H+ S D +++++N G I+ +G
Sbjct: 181 ATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVIEN-GHIVETGT 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 79.5 bits (196), Expect = 7e-17
Identities = 55/233 (23%), Positives = 90/233 (38%), Gaps = 47/233 (20%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYIS--QYDLH 58
+G G GK+TL++ + + SG++ +G+ + +F+ I Q D
Sbjct: 46 TVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNI 102
Query: 59 IAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNL 118
+ TV+E I G + +EV++ K+A + L +
Sbjct: 103 LFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDF-----------IMNLPQGY 144
Query: 119 QTDYILKILGLDICADTIVGDPMRRGV--SGGQKKRLTTGELIVGPTRALFMDEISNGLD 176
DT VG RGV SGGQK+RL+ + + L +DE ++ LD
Sbjct: 145 ---------------DTEVG---ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 186
Query: 177 SSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229
+ I L L D T LI + T D ++++ G IV G
Sbjct: 187 LESESIIQEALDVLSK--DRTTLIVAHR--LSTITHADKIVVIENGHIVETGT 235
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 104 bits (262), Expect = 2e-25
Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 32/232 (13%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP------ 729
++L ++ R G + +++G SG+GK+T + ++ + EG I + G
Sbjct: 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRD 71
Query: 730 ----------KVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFV 779
Q+ ++TV E+V+ + L +K +
Sbjct: 72 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG-----LSKHDAR 126
Query: 780 NEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 839
L+ + GI G LS Q++R++IA L P ++ DEPTS LD
Sbjct: 127 ERALKYLAKVGIDERAQGKY-PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 185
Query: 840 AIVMRAVKNVVETGRTVVCTIHQPSIDIFEAF---DDLILMKNGGRIIYSGP 888
V+R ++ + E G+T+V H ++ A +I + G+I G
Sbjct: 186 GEVLRIMQQLAEEGKTMVVVTH----EMGFARHVSSHVIFLHQ-GKIEEEGD 232
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 65.6 bits (160), Expect = 4e-12
Identities = 41/275 (14%), Positives = 88/275 (32%), Gaps = 66/275 (24%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS-------------- 49
++G G GK+T L ++ S G + NG ++ +
Sbjct: 33 IIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT 89
Query: 50 --AYISQYDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMK 107
+ Q+ + MTV E + + + D+ + +K
Sbjct: 90 RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKY----------------- 132
Query: 108 AISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALF 167
L +G+D A +SGGQ++R++ + L
Sbjct: 133 ----------------LAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLL 172
Query: 168 MDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYH 227
DE ++ LD +++ ++ L +++ + V+ + +GKI
Sbjct: 173 FDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM--GFARHVSSHVIFLHQGKIEEE 230
Query: 228 GPRSYICKFFEDCGFRCPERKGVADFLQEVISRKD 262
G + F P+ + FL+ + + +
Sbjct: 231 GDPEQV--------FGNPQSPRLQQFLKGSLKKLE 257
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 103 bits (258), Expect = 3e-25
Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 28/219 (12%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP---KVQHTFA 736
L ++G R G + L+G +GAGK+TL+ ++G +G +G I+ G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 737 RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLV 796
Y Q V L+ KT+ E +N+V + LD
Sbjct: 72 LHRAYLSQQQTPPFATPVWH--------YLTLHQHDKTRTELLNDVAGALALDDKLGRST 123
Query: 797 GLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRAVKNV 849
LS + +R+ +A ++ ++ +DEP + LD + + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 850 VETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
+ G +V + H + L+K G+++ SG
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGR 215
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 59.9 bits (145), Expect = 2e-10
Identities = 45/236 (19%), Positives = 77/236 (32%), Gaps = 60/236 (25%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS---AYISQYDLHIA 60
L+G G GK+TLL+ ++G S G + + G L+ + K + AY+SQ
Sbjct: 30 LVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPF 85
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
V + T H+ D + + +
Sbjct: 86 ATPVWHYL--------TLHQHDKTRTELLND----------------------------- 108
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPT-------RALFMDEISN 173
+ L LD +SGG+ +R+ +++ T + L +DE N
Sbjct: 109 --VAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMN 161
Query: 174 GLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229
LD + + L L A + S T L+ GK++ G
Sbjct: 162 SLDVAQQSALDKILSALCQQGLAIVMSS--HDLNHTLRHAHRAWLLKGGKMLASGR 215
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 101 bits (253), Expect = 7e-25
Identities = 41/189 (21%), Positives = 81/189 (42%), Gaps = 16/189 (8%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR 737
+L IT T G + G +G GKTTL+ +S ++G+I G P
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVP--ITKVKG 70
Query: 738 ISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVG 797
+ + I I+VE+ + A L +K + + L+++E+ +K
Sbjct: 71 KIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK--- 122
Query: 798 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV-ETGRTV 856
+ LS +R+ +A L+ N I +D+P +D + V++++ ++ E G +
Sbjct: 123 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 179
Query: 857 VCTIHQPSI 865
+ + + S
Sbjct: 180 ISSREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 59.2 bits (143), Expect = 2e-10
Identities = 25/201 (12%), Positives = 61/201 (30%), Gaps = 47/201 (23%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
+ G G GKTTLL +S L GE+ YNG + ++ + +
Sbjct: 29 VVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGV--PITKVKGKIFFLPEEIIVPR 83
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
+++V + + A G + + +
Sbjct: 84 KISVEDYLKAVASLYGVKVNKNEIMDA--------------------------------- 110
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
L+ + + + +S G +R+ ++ +D+ +D +
Sbjct: 111 ---LESVEVLDLKKKL------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 181 FQIVSFLKHLVHITDATALIS 201
+++ + ++ + S
Sbjct: 162 HKVLKSILEILKEKGIVIISS 182
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 101 bits (254), Expect = 1e-24
Identities = 56/239 (23%), Positives = 103/239 (43%), Gaps = 24/239 (10%)
Query: 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG 712
TF ++++ + +L +I + + G + ++G SG+GK+TL ++
Sbjct: 3 TFRNIRF-----------RYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 51
Query: 713 RKTGGIIEGDIRIGGYP---KVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPE 769
G + I G+ + R G Q D N ++ +++ + +
Sbjct: 52 FYI--PENGQVLIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEK 108
Query: 770 IDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 829
+ K I Y+ + +GLS QR+R+ IA LV NP I+ DE
Sbjct: 109 VIYAAKLA---GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 165
Query: 830 PTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
TS LD + ++MR + + + GRTV+ H+ S + D +I+M+ G+I+ G
Sbjct: 166 ATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEK-GKIVEQGK 220
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 61.5 bits (149), Expect = 7e-11
Identities = 43/231 (18%), Positives = 81/231 (35%), Gaps = 43/231 (18%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQY--DLH 58
+ ++G G GK+TL + +G+V +G+ L P + D
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNV 87
Query: 59 IAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNL 118
+ ++ + I + S+++VI KLAG
Sbjct: 88 LLNRSIIDNISL-------ANPGMSVEKVIYAAKLAGA---------------------- 118
Query: 119 QTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSS 178
+ + G+SGGQ++R+ +V + L DE ++ LD
Sbjct: 119 -----HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 179 TTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229
+ I+ + + T +I + T D +++M +GKIV G
Sbjct: 174 SEHVIMRNMHKICK--GRTVIIIAHR--LSTVKNADRIIVMEKGKIVEQGK 220
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.0 bits (244), Expect = 4e-23
Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 14/221 (6%)
Query: 673 NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP--- 729
N+ + +L +T T RPG +TAL+G +G+GK+T+ +L G + + G P
Sbjct: 23 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQ 80
Query: 730 KVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE-L 788
R Q + +++E++ + L P ++ T A + I L
Sbjct: 81 YEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY--GLTQKPTMEEITAAAVKSGAHSFISGL 137
Query: 789 DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKN 848
+ V G LS QR+ + +A L+ P ++ +D+ TS LDA + V + +
Sbjct: 138 PQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYE 196
Query: 849 VVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
E R+V+ S + E D ++ ++ G I G
Sbjct: 197 SPERYSRSVLLITQHLS--LVEQADHILFLEG-GAIREGGT 234
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.5 bits (175), Expect = 4e-14
Identities = 39/232 (16%), Positives = 86/232 (37%), Gaps = 42/232 (18%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ---KTSAYISQYDL 57
+T L+G G GK+T+ + L + G++ +G L ++ + + A + Q +
Sbjct: 42 VTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQ-EP 97
Query: 58 HIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKN 117
+ +++E I + + +M+E+ +G
Sbjct: 98 QVFGRSLQENIAYGLT------QKPTMEEITAAAVKSGA--------------------- 130
Query: 118 LQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDS 177
I GL DT V + + +SGGQ++ + ++ L +D+ ++ LD+
Sbjct: 131 -----HSFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDA 184
Query: 178 STTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229
++ Q+ L + L+ + D ++ + G I G
Sbjct: 185 NSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFLEGGAIREGGT 234
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 95.0 bits (236), Expect = 2e-22
Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 14/215 (6%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTF 735
++ + DI G +G SG GK+TL+ +++G +T I GD+ IG
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPP 69
Query: 736 ARIS-GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYS 794
A G Q+ P+++V E++ F L + + + + +V + ++L +
Sbjct: 70 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVN---QVAEVLQLAHLLDR 126
Query: 795 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV-ETG 853
LS QR+R+ I LVA PS+ +DEP S LDA + + + G
Sbjct: 127 KP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 181
Query: 854 RTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
RT++ H D I++ + GR+ G
Sbjct: 182 RTMIYVTH--DQVEAMTLADKIVVLDAGRVAQVGK 214
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 66.5 bits (162), Expect = 1e-12
Identities = 45/252 (17%), Positives = 90/252 (35%), Gaps = 52/252 (20%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS-AYISQYDLHIAEM 62
+G GCGK+TLL ++G + + SG++ R+++ P + + Q +
Sbjct: 31 FVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHL 87
Query: 63 TVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDY 122
+V E + F + G + + V ++
Sbjct: 88 SVAENMSFGLKLAGA-KKEVINQRVNQV-------------------------------- 114
Query: 123 ILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQ 182
++L L D +SGGQ++R+ G +V +DE + LD++ Q
Sbjct: 115 -AEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 168
Query: 183 IVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDCGF 242
+ + L T + E L D ++++ G++ G + +
Sbjct: 169 MRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLEL--------Y 219
Query: 243 RCPERKGVADFL 254
P + VA F+
Sbjct: 220 HYPADRFVAGFI 231
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 94.2 bits (234), Expect = 6e-22
Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 12/214 (5%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP---KVQHT 734
Q+L DI+ +P + A G SG GK+T+ +L G+I I G P
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLEN 73
Query: 735 FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYS 794
+ G+ Q+ E + + DL + + +
Sbjct: 74 WRSQIGFVSQDSAIMAGTIRE--NLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNT 131
Query: 795 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGR 854
VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V +A+ ++++ GR
Sbjct: 132 EVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GR 189
Query: 855 TVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
T + H+ S D + ++ G+I SG
Sbjct: 190 TTLVIAHRLS--TIVDADKIYFIEK-GQITGSGK 220
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 66.4 bits (162), Expect = 2e-12
Identities = 44/231 (19%), Positives = 80/231 (34%), Gaps = 42/231 (18%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYIS--QYDLH 58
+ G G GK+T+ S L + +GE++ +G +D + + I D
Sbjct: 30 IIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSA 86
Query: 59 IAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNL 118
I T+RE + + T + ++ PD
Sbjct: 87 IMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL----------------- 129
Query: 119 QTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSS 178
+T VG+ + +SGGQ++RL + + L +DE + LDS
Sbjct: 130 ---------------NTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSE 173
Query: 179 TTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229
+ + L L+ T L+ + T D + + +G+I G
Sbjct: 174 SESMVQKALDSLMK--GRTTLVIAHR--LSTIVDADKIYFIEKGQITGSGK 220
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 89.0 bits (220), Expect = 4e-20
Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 15/222 (6%)
Query: 672 FNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG---RKTGGIIEGDIRIGGY 728
F + K+ L ++ G ++G SGAGKTT M +++G TG + D +
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Query: 729 PKVQH-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE 787
K+ R G Q PN+T E++ F + +++ + E EV + ++
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE---EVAKILD 129
Query: 788 LDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVK 847
+ + LS Q++R+ +A LV +PS++ +DEP S LDAR VK
Sbjct: 130 IHHVLN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVK 184
Query: 848 NVV-ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
V G T++ H P+ DIF D + ++ G+++ G
Sbjct: 185 EVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGK 224
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 58.6 bits (141), Expect = 6e-10
Identities = 43/257 (16%), Positives = 81/257 (31%), Gaps = 57/257 (22%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ------KTSAYISQYDL 57
+LG G GKTT + ++G S +GE+ ++ + + + Q
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA 92
Query: 58 HIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKN 117
+T E I F ++ E +
Sbjct: 93 LYPNLTAFENIAFPLTNMKMSK------------------------EEIRKRVEEVAKIL 128
Query: 118 LQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDS 177
+ + R +SG Q++R+ +V L +DE + LD+
Sbjct: 129 DIHHVL---------------NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA 173
Query: 178 STTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFF 237
+ +K + T L+ PA + F + D V ++ +GK+V G +
Sbjct: 174 RMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDL---- 228
Query: 238 EDCGFRCPERKGVADFL 254
+ P VA +
Sbjct: 229 ----YDNPVSIQVASLI 241
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 86.9 bits (215), Expect = 2e-19
Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 22/222 (9%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTGG-IIEGDIRIGGYPKVQ 732
++ + +++ + G L+G SG GKTT + +++G + G I GD + K
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 733 HTFARISG--YCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG 790
+ Q+ P++TV +++ F LR P ++ + EV + + L
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR---EVAELLGLTE 131
Query: 791 IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV 850
+ LS QR+R+ + +V P + MDEP S LDA+ + +K +
Sbjct: 132 LLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186
Query: 851 -ETGRTVVCTIHQPSIDIFEAF---DDLILMKNGGRIIYSGP 888
+ G T + H D EA D + +M G + G
Sbjct: 187 RQLGVTTIYVTH----DQVEAMTMGDRIAVMNR-GVLQQVGS 223
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 61.5 bits (149), Expect = 7e-11
Identities = 49/251 (19%), Positives = 85/251 (33%), Gaps = 44/251 (17%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMT 63
LLG GCGKTT L ++G S G++ + V M
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGD----KLVADPEKGIFVPPKDRDIAMV 86
Query: 64 VRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYI 123
+ + D++ +KL K+ P + + +
Sbjct: 87 FQSYALYPHMT-----VYDNIAFPLKLRKV------PRQEIDQRV------------REV 123
Query: 124 LKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQI 183
++LGL + + +SGGQ++R+ G IV + MDE + LD+ ++
Sbjct: 124 AELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 184 VSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDCGFR 243
+ LK L T + E + D + +M G + G + +
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDEV--------YD 229
Query: 244 CPERKGVADFL 254
P VA F+
Sbjct: 230 KPANTFVAGFI 240
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 79.3 bits (195), Expect = 6e-17
Identities = 42/211 (19%), Positives = 87/211 (41%), Gaps = 17/211 (8%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFAR-I 738
L +++ G ++G +GAGKT +++++G G I + G + +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHD 73
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
+ QN P++ V++++ F ++ + V + + ++++ +
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK------KIKDPKRVLDTARDLKIEHLLDRN--- 124
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV-ETGRTVV 857
LS +++R+ +A LV NP I+ +DEP S LD R + + + TV+
Sbjct: 125 --PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 858 CTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
H D I + G++I G
Sbjct: 183 HITH--DQTEARIMADRIAVVMDGKLIQVGK 211
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 60.5 bits (146), Expect = 1e-10
Identities = 47/252 (18%), Positives = 83/252 (32%), Gaps = 55/252 (21%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQK-TSAYISQYDLHIAEM 62
+LG G GKT L ++G SG + +G + + P+K A++ Q M
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHM 87
Query: 63 TVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDY 122
V++ ++F R + +
Sbjct: 88 NVKKNLEFGMRMKKIKDPKRVLD------------------------------------- 110
Query: 123 ILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQ 182
+ L ++ D +SGG+++R+ +V + L +DE + LD T
Sbjct: 111 TARDLKIEHLLDR-----NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 183 IVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDCGF 242
L L T L E + D + ++ +GK++ G I F
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEI--------F 216
Query: 243 RCPERKGVADFL 254
P VA F+
Sbjct: 217 EKPVEGRVASFV 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 73.5 bits (180), Expect = 6e-15
Identities = 43/202 (21%), Positives = 89/202 (44%), Gaps = 16/202 (7%)
Query: 689 PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARIS-GYCEQNDI 747
L+G +GAGK+ +++++G G++R+ G R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYA 80
Query: 748 HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807
P+++V ++ + E D + V E+ + + + + + LS
Sbjct: 81 LFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKLGIAHLLDRKP-----ARLSGG 130
Query: 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV-ETGRTVVCTIHQPSID 866
+R+R+ +A LV P ++ +DEP S +D + ++M ++ V E ++ H +
Sbjct: 131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-E 189
Query: 867 IFEAFDDLILMKNGGRIIYSGP 888
D++ +M N GRI+ G
Sbjct: 190 AAMLADEVAVMLN-GRIVEKGK 210
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 57.7 bits (139), Expect = 1e-09
Identities = 49/252 (19%), Positives = 86/252 (34%), Gaps = 55/252 (21%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS-AYISQYDLHIAEM 62
LLG G GK+ L ++G + GEV NG + P++ ++ Q +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 63 TVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDY 122
+V I + R R ++E+ + +A + D +S
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL-----DRKPARLSG----------- 129
Query: 123 ILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQ 182
G+++R+ +V R L +DE + +D T
Sbjct: 130 -------------------------GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164
Query: 183 IVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDCGF 242
++ L+ + D L E L D+V +M G+IV G + F
Sbjct: 165 LMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKEL--------F 215
Query: 243 RCPERKGVADFL 254
+ VA+FL
Sbjct: 216 SAKNGE-VAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 50.0 bits (118), Expect = 2e-07
Identities = 20/195 (10%), Positives = 40/195 (20%), Gaps = 36/195 (18%)
Query: 694 ALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNIT 753
+ G G GKTTL+ + R R ++
Sbjct: 4 IITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEV--------RDPETKKRTGFRIITTE 53
Query: 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLT 813
++ + S + + E
Sbjct: 54 GKKKIFSSKFFTSKKLVGSYGVNVQYFE----------------------ELAIPILERA 91
Query: 814 IAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDD 873
+I +DE + + + VV TI + +
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL--VKE 148
Query: 874 LILMKNGGRIIYSGP 888
+ + +I P
Sbjct: 149 IRRLPG-AVLIELTP 162
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 39.2 bits (90), Expect = 0.001
Identities = 12/102 (11%), Positives = 26/102 (25%), Gaps = 5/102 (4%)
Query: 3 LLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQK--TSAYISQYDLHIA 60
++ G PG GKTTL+ + +L + R E + +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDV 102
+ + + +++ V
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKV 102
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (94), Expect = 8e-04
Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 8/114 (7%)
Query: 762 AWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVAN 821
A L + E + + ++Y G V+ L+ L A+
Sbjct: 301 ASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALA------LLFAINSYQP 354
Query: 822 PSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLI 875
+DE + LD + ++ + + +FE D L+
Sbjct: 355 SPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALV 406
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1252 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.86 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.77 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.67 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.5 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.46 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.17 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.11 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.06 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.96 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.9 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.7 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.79 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.76 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.69 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.66 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.63 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.48 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.39 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 97.28 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.26 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.15 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.07 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.04 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.91 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.88 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.87 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.81 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.8 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.72 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.72 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.69 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.68 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.65 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.64 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.64 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.6 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.58 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.54 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.5 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.48 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.43 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.39 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.36 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.35 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.35 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.34 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.33 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.32 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.29 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.29 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.29 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.28 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.28 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.28 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.27 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.26 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.23 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.23 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.23 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.22 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.21 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.19 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.15 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.15 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.15 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.15 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.14 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.13 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.11 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.11 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.08 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.07 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.05 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.04 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.02 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.02 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.01 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.01 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.0 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.0 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.99 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.98 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.98 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.97 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.97 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.95 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.95 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.95 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.95 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.95 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.94 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.93 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.93 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.93 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.92 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.92 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.88 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.87 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.86 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.85 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.81 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.8 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.78 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.76 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.74 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.73 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.72 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.72 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.7 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.7 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.69 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.69 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.67 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.67 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.65 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.62 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.61 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.6 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.59 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.59 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.58 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.56 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.56 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.56 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.55 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.53 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.52 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.52 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.49 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.49 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.49 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.47 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.45 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.44 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.43 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.41 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.38 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.38 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.35 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.31 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.3 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.28 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.27 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.26 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.25 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.23 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.22 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.22 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.17 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 95.17 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.16 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.16 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.16 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.14 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.14 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.14 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.13 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.11 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.11 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.11 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.08 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.07 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.07 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.07 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.05 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.04 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.04 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.0 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.0 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.96 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.95 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.94 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.94 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.92 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.87 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.84 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.81 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.8 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.73 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.69 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.68 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 94.67 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.65 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.65 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.64 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.63 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.62 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.62 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.61 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.61 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.59 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.57 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.57 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.53 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.53 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.42 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.37 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.36 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.35 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.33 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.32 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.32 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.32 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.31 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.31 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.31 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.3 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.28 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.27 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.24 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.23 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.2 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.2 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.16 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.16 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.15 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.14 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.13 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.11 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 94.09 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.09 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.08 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.05 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.03 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.03 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.96 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.94 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.93 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.92 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.91 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.91 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.9 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.9 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.88 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.86 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.85 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.82 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.81 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.78 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.75 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.74 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.72 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.72 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.71 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.7 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.7 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.68 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.66 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.66 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.66 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.64 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 93.62 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.61 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.61 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.61 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.59 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.59 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.59 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.57 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.54 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 93.52 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.51 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.51 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.49 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.46 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.45 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.44 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 93.44 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.43 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.43 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.42 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.4 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.39 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.38 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.37 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.37 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.28 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.27 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.27 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.25 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.24 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.2 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.2 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.18 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 93.15 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.13 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.12 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.08 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 93.06 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.06 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.04 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.02 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.01 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.01 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.01 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.98 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.98 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.97 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.97 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.94 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.94 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.9 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.89 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.88 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.87 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.82 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.82 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.81 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.8 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.8 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.8 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 92.77 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.72 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 92.7 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 92.69 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.66 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.66 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.64 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.62 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.62 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.61 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.57 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.57 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.56 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.51 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.42 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.42 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.4 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.39 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.38 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.34 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.27 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.26 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.22 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.19 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.15 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.15 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.15 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.14 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 92.13 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.1 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.07 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.03 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.03 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.97 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.96 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.93 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.88 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 91.87 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.84 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.81 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.81 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.81 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 91.79 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.77 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.76 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.73 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.69 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.59 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.57 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.57 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.57 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.53 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.5 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.5 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 91.49 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.49 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.45 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.43 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.4 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.3 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.3 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.22 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.2 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.17 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 91.15 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.13 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.04 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.95 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.91 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 90.91 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.88 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.85 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.85 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 90.85 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.84 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 90.82 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 90.8 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 90.65 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.61 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.58 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.5 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.47 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 90.47 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.46 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 90.29 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.25 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.12 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 89.98 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 89.89 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.86 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.83 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 89.75 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 89.72 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.65 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 89.1 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 88.89 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 88.86 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 88.75 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 88.54 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 88.5 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 88.48 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 88.39 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.12 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.95 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 87.93 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.63 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 87.08 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.05 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 87.02 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.98 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 86.76 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 86.63 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 86.5 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 86.4 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 86.32 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 86.06 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.03 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 85.98 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 85.87 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.61 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.87 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 84.81 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 84.61 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 84.51 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.69 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 82.91 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 81.75 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 81.59 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 81.06 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 80.61 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=336.58 Aligned_cols=214 Identities=24% Similarity=0.327 Sum_probs=189.8
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 79999599999558520112555333322236057874873999945899886789988834978970799999999507
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++.+|++..+. +..+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.+||.+.
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred CEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 189986999989-------------9999856066886998999999999809999999964878--8989899999980
Q ss_pred CC---C----CCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 83---4----3333589973698889999999999999872499999998999999999998299542223234898887
Q 000853 731 VQ---H----TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSG 803 (1252)
Q Consensus 731 ~~---~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ig~~~~~~ 803 (1252)
.. . ..++.+|||+|++.+++.+||+|++.|...++. .+.++.++++.++++.++|.+..+.. ++.
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~---~~~~e~~~~v~~~l~~~~l~~~~~~~-----p~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRK-----PRE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCC-----GGG
T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHCCC-----HHH
T ss_conf 3566444245322551200221222310116676330687729---99899999999999875996676299-----334
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCE
Q ss_conf 7988999999999995099688993999999999999999999999877-989999945898899997200146643958
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 804 lSgG~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~h~~~~~~~~~~d~i~~l~~gg~ 882 (1252)
||||||||++||++|+.+|++|++||||+|||+.++..+++.++++.++ |.|||+++|++. ++...+|++++|. +|+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~-~G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMN-RGV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEE-CCE
T ss_conf 99999999999999826998898258876569899989999999998636988999959999-9999699999998-999
Q ss_pred EEEECCC
Q ss_conf 9996699
Q 000853 883 IIYSGPL 889 (1252)
Q Consensus 883 ~~~~g~~ 889 (1252)
+++.|++
T Consensus 218 iv~~G~~ 224 (240)
T d1g2912 218 LQQVGSP 224 (240)
T ss_dssp EEEEECH
T ss_pred EEEECCH
T ss_conf 9998599
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=340.56 Aligned_cols=215 Identities=22% Similarity=0.338 Sum_probs=190.8
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 79999599999558520112555333322236057874873999945899886789988834978970799999999507
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++.+|++.++. .+.+|++||+.+++||+++|+||||||||||+++|+|... +.+|+|.+||.+.
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 499987999999-------------9999813067887998999999999829999999975899--9878799916413
Q ss_pred CC-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 83-43333589973698889999999999999872499999998999999999998299542223234898887798899
Q 000853 731 VQ-HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ig~~~~~~lSgG~r 809 (1252)
.. ...++.+|||+|++.+++.+||+|++.|.+.++ ..+.++.+++++++++.++|.+..+.. +..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY-----PAQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSC-----TTTCCSSCH
T ss_pred CCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCC-----HHHCCHHHH
T ss_conf 547700015899800335342220999999999873---999999999999999875985566099-----546999998
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 9999999995099688993999999999999999999999877-989999945898899997200146643958999669
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 krv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~h~~~~~~~~~~d~i~~l~~gg~~~~~g~ 888 (1252)
||++||++|+.+|++|+|||||+|||+.++..+++.++++.++ |.|+|+++|++. ++...+|++++|.+ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 89999766404998243068866689899989999999998731980799948999-99986999999989-99999859
Q ss_pred CC
Q ss_conf 98
Q 000853 889 LG 890 (1252)
Q Consensus 889 ~~ 890 (1252)
+.
T Consensus 221 ~~ 222 (239)
T d1v43a3 221 PT 222 (239)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=341.50 Aligned_cols=214 Identities=26% Similarity=0.376 Sum_probs=188.1
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECC
Q ss_conf 99995999995585201125553333222360578748739999458998867899888349789707999999995078
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.+. .+.+|+|+|+.+++||++||+||||||||||+++++|... +.+|+|.+||.+..
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 99999999989-------------9999811177886998999998999829999999965878--88888999999778
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 3-433335899736988899999999999998724999999989999999999982995422232348988877988999
Q 000853 732 Q-HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 732 ~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ig~~~~~~lSgG~rk 810 (1252)
. ...++.+|||+|++.+++.+||+|++.|...++. .+.++.+++++++++.++|.+..+.. +..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~-----~~~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCC-----HHHCCHHHHH
T ss_conf 886444322234334202643337889789998759---98899999999999757886566489-----6569999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 99999999509968899399999999999999999999987-79899999458988999972001466439589996699
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 811 rv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~h~~~~~~~~~~d~i~~l~~gg~~~~~g~~ 889 (1252)
|++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ .|.|||+++|++. ++...+|++++|. +|++++.|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~-~G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEEECH
T ss_conf 9999999703998899758887889889989999999998742987999948999-9999699999997-9999998089
Q ss_pred C
Q ss_conf 8
Q 000853 890 G 890 (1252)
Q Consensus 890 ~ 890 (1252)
.
T Consensus 216 ~ 216 (232)
T d2awna2 216 L 216 (232)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=330.82 Aligned_cols=219 Identities=23% Similarity=0.359 Sum_probs=188.4
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECC
Q ss_conf 99995999995585201125553333222360578748739999458998867899888349789707999999995078
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++.+|+++.++.. .....+|+|+||.+++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCC--CCCCEEEECCEECC
T ss_conf 8999079994899---------820898713377884997999988999982165575068877--77662699999857
Q ss_pred CC---C---C-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 34---3---3-3358997369888999999999999987249999999899999999999829954-2223234898887
Q 000853 732 QH---T---F-ARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGVSG 803 (1252)
Q Consensus 732 ~~---~---~-~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~ig~~~~~~ 803 (1252)
.. . + ++.+|||+|++.+++.+||.|++.+....+.....+.+++.+++.+.++.++|.+ ..+.. +..
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----p~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred CCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCC-----HHH
T ss_conf 688555123125557788041241768668887757888722478999999999999887624234553488-----023
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCE
Q ss_conf 7988999999999995099688993999999999999999999999877-989999945898899997200146643958
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 804 lSgG~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~h~~~~~~~~~~d~i~~l~~gg~ 882 (1252)
|||||||||+|||||+.+|++|++||||+|||+.++..+++.|+++.+. |.|||+++|++ ++...+|++++|.+ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~--~~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH--HHHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCH--HHHHHCCEEEEEEC-CE
T ss_conf 8999999999875652278889946876546989999999999999984399999987888--99986998999989-99
Q ss_pred EEEECCC
Q ss_conf 9996699
Q 000853 883 IIYSGPL 889 (1252)
Q Consensus 883 ~~~~g~~ 889 (1252)
+++.|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEECCC
T ss_conf 9995257
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=336.67 Aligned_cols=216 Identities=26% Similarity=0.370 Sum_probs=189.7
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 79999599999558520112555333322236057874873999945899886789988834978970799999999507
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++.+|+++.++. ++..+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.+||.+.
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEEEEEEECC-----------CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 8999757999889-----------99899804078987998999998999809999999975868--8874599999995
Q ss_pred CC------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 83------433335899736988899999999999998724999999989999999999982995422232348988877
Q 000853 731 VQ------HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGL 804 (1252)
Q Consensus 731 ~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ig~~~~~~l 804 (1252)
.. ...++.+|||+|+..++|.+||+|++.|....+ ..+.++.+++++++++.+||.+..+..+ ..|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----REL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred ECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCH-----HHC
T ss_conf 13731115312045147730433466665777766556761---3799999999999986659176664895-----459
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCEE
Q ss_conf 988999999999995099688993999999999999999999999877-9899999458988999972001466439589
Q 000853 805 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 805 SgG~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~h~~~~~~~~~~d~i~~l~~gg~~ 883 (1252)
||||||||+|||+|+.+|++|++||||+|||+.++..+++.++++.+. |.|+|+++|++. ++...+|++++|.+ |++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEE
T ss_conf 9999858998757760466145447866799899889989999998635987999979999-99996999999989-999
Q ss_pred EEECCC
Q ss_conf 996699
Q 000853 884 IYSGPL 889 (1252)
Q Consensus 884 ~~~g~~ 889 (1252)
+..|++
T Consensus 220 v~~g~~ 225 (242)
T d1oxxk2 220 VQVGKP 225 (242)
T ss_dssp EEEECH
T ss_pred EEECCH
T ss_conf 998699
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=335.27 Aligned_cols=219 Identities=22% Similarity=0.300 Sum_probs=189.5
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECC
Q ss_conf 99995999995585201125553333222360578748739999458998867899888349789707999999995078
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|++.++... .....+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC--CCCCCEEECCEEEE
T ss_conf 7998279996999---------814898615057886997999989998988899998758863--66773288676852
Q ss_pred C---C---CCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3---4---333358997369888999999999999987249999999899999999999829954222323489888779
Q 000853 732 Q---H---TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~---~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ig~~~~~~lS 805 (1252)
. . .+++.+|||+|+..+++.+||+|++.|...++. .+.++.++++.++++.+||.+..+.. +..||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~-----~~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSY-----PSNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSC-----BSCCC
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCCHHHHCC-----HHHCC
T ss_conf 08755511554166430225222799649999999999849---99899999999999976990355489-----43499
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCEEE
Q ss_conf 88999999999995099688993999999999999999999999877-98999994589889999720014664395899
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gG~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~h~~~~~~~~~~d~i~~l~~gg~~~ 884 (1252)
|||||||+||++|+.+|++|++||||+|||+.++..+++.|+++.++ |.|||+++|++. ++...+|++++|. +|+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~-~G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEE-TTEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEE-CCEEE
T ss_conf 999989998640105898687446556589888567999999998646978999838999-9998699999997-99999
Q ss_pred EECCCCC
Q ss_conf 9669987
Q 000853 885 YSGPLGQ 891 (1252)
Q Consensus 885 ~~g~~~~ 891 (1252)
+.|++.+
T Consensus 221 ~~G~~~e 227 (240)
T d3dhwc1 221 EQDTVSE 227 (240)
T ss_dssp EEEETTT
T ss_pred EECCHHH
T ss_conf 9879999
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=328.52 Aligned_cols=214 Identities=25% Similarity=0.326 Sum_probs=190.5
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECC
Q ss_conf 99995999995585201125553333222360578748739999458998867899888349789707999999995078
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++.+|++..+ +++.+|+|+|+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 I~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~ 67 (238)
T d1vpla_ 3 VVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVV 67 (238)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred EEEEEEEEEE-------------CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 8999589999-------------99999806256884897999999999999999999966988--78887999867244
Q ss_pred C--CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 3--43333589973698889999999999999872499999998999999999998299542223234898887798899
Q 000853 732 Q--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 732 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ig~~~~~~lSgG~r 809 (1252)
. ...++.++|+||++.+++.+|+.|++.|.+.++. ....+.++.++.+++.++|.+..+..+ +.+|||||
T Consensus 68 ~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~~ 139 (238)
T d1vpla_ 68 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMV 139 (238)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHH
T ss_pred CCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHH-----HHCCHHHH
T ss_conf 6839887218675001546878667788898998617---998999999999998679788885045-----33799898
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 99999999950996889939999999999999999999998779899999458988999972001466439589996699
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 810 krv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~~l~~gg~~~~~g~~ 889 (1252)
||++||++|+++|++|+|||||+|||+.++..+++.++++++.|+||++++|++. ++...||++++|. +|++++.|++
T Consensus 140 qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~-~G~iv~~g~~ 217 (238)
T d1vpla_ 140 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIH-NGTIVETGTV 217 (238)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEE-TTEEEEEEEH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECCH
T ss_conf 9999999986599988733798897989999999999999965998999959899-9999699999998-9999999289
Q ss_pred C
Q ss_conf 8
Q 000853 890 G 890 (1252)
Q Consensus 890 ~ 890 (1252)
+
T Consensus 218 ~ 218 (238)
T d1vpla_ 218 E 218 (238)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=331.21 Aligned_cols=210 Identities=20% Similarity=0.305 Sum_probs=183.7
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECC
Q ss_conf 99995999995585201125553333222360578748739999458998867899888349789707999999995078
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++.+|+++++. . .+|+||||.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------C-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 89998999949-------------9-78843378987998999998999829999999964768--88788999567346
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 3-433335899736988899999999999998724999999989999999999982995422232348988877988999
Q 000853 732 Q-HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 732 ~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ig~~~~~~lSgG~rk 810 (1252)
. ...++.+|||+|+..+++.+||+|++.|...++.... ++++.++++.+++.+..+..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD------PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC------HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCH------HHHHHHHHHHHCCHHHHHCCH-----HHCCHHHHC
T ss_conf 521657405615121111746657788888776405538------999999999825655575895-----547999840
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 99999999509968899399999999999999999999987-79899999458988999972001466439589996699
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 811 rv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~h~~~~~~~~~~d~i~~l~~gg~~~~~g~~ 889 (1252)
||+|||+|+.+|++|+|||||+|||+.++..+++.++++.+ .|.|||+++|++. ++...+|++++|.+ |++++.|++
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred CHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 1403043443677144347876799899999999999998647968999749999-99996999999979-999998699
Q ss_pred C
Q ss_conf 8
Q 000853 890 G 890 (1252)
Q Consensus 890 ~ 890 (1252)
.
T Consensus 213 ~ 213 (229)
T d3d31a2 213 E 213 (229)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=320.80 Aligned_cols=215 Identities=23% Similarity=0.272 Sum_probs=184.6
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECC
Q ss_conf 99995999995585201125553333222360578748739999458998867899888349789707999999995078
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++.+|++..+. ...+|+||||.+++||++||+||||||||||+++|+|... +.+|+|.+||.+..
T Consensus 3 Lev~nl~k~yg-------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~ 67 (258)
T d1b0ua_ 3 LHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNIN 67 (258)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCEEECCEEEC
T ss_conf 99997899989-------------9998815066886997999998999829999999974766--78997799999933
Q ss_pred CC----------------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CC
Q ss_conf 34----------------33335899736988899999999999998724999999989999999999982995422-23
Q 000853 732 QH----------------TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIK-YS 794 (1252)
Q Consensus 732 ~~----------------~~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-~~ 794 (1252)
.. ..++.+|||+|+..+++.+||.|++.+..... ...+..+.++++.++++.++|.+.. +.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 145 (258)
T d1b0ua_ 68 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQGK 145 (258)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred CCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 67752000023517679997454489983323141101021365657876--2999899999999999982995244306
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCE
Q ss_conf 23489888779889999999999950996889939999999999999999999998779899999458988999972001
Q 000853 795 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL 874 (1252)
Q Consensus 795 ~ig~~~~~~lSgG~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i 874 (1252)
. +..|||||||||+||++|+.+|++|++||||+|||+.++..|++.|+++++.|.|||+++|++. ++...+||+
T Consensus 146 ~-----p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri 219 (258)
T d1b0ua_ 146 Y-----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 219 (258)
T ss_dssp C-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEE
T ss_pred C-----CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCEE
T ss_conf 8-----2205677888989999984399878852455568878888998765541036883389948999-999869999
Q ss_pred EEEECCCEEEEECCCC
Q ss_conf 4664395899966998
Q 000853 875 ILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 875 ~~l~~gg~~~~~g~~~ 890 (1252)
++|.+ |++++.|++.
T Consensus 220 ~vm~~-G~iv~~g~~~ 234 (258)
T d1b0ua_ 220 IFLHQ-GKIEEEGDPE 234 (258)
T ss_dssp EEEET-TEEEEEECHH
T ss_pred EEEEC-CEEEEECCHH
T ss_conf 99979-9999984999
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=324.04 Aligned_cols=219 Identities=23% Similarity=0.273 Sum_probs=186.7
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 79999599999558520112555333322236057874873999945899886789988834978970799999999507
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
-++.+|++.++. ..++|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 iL~v~nlsk~yg-------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 699977899979-------------9688712179988997999999999849999999977976--8873799999966
Q ss_pred CCCC----CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC----------CCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8343----333589973698889999999999999872499----------99999899999999999829954222323
Q 000853 731 VQHT----FARISGYCEQNDIHSPNITVEESVIFSAWLRLS----------PEIDLKTKAEFVNEVLQTIELDGIKYSLV 796 (1252)
Q Consensus 731 ~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~----------~~~~~~~~~~~v~~~l~~l~l~~~~~~~i 796 (1252)
.... .+..++|++|++..++.+||.|++.+++..+.. .....++..+++.++++.+++.+..+..+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH
T ss_conf 40569999983387257764247887423214301333034504566542135328999999999987619630205953
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEE
Q ss_conf 48988877988999999999995099688993999999999999999999999877989999945898899997200146
Q 000853 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLIL 876 (1252)
Q Consensus 797 g~~~~~~lSgG~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~~ 876 (1252)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.++++++.|.||++++|+.. ++.+.+|++++
T Consensus 149 -----~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 149 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----HHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEE
T ss_conf -----569918888999999997592723243976569999999999999999978998999947699-99986999999
Q ss_pred EECCCEEEEECCCCC
Q ss_conf 643958999669987
Q 000853 877 MKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 877 l~~gg~~~~~g~~~~ 891 (1252)
|.+ |+++..|++.+
T Consensus 223 m~~-G~iv~~g~~~e 236 (254)
T d1g6ha_ 223 MFN-GQIIAEGRGEE 236 (254)
T ss_dssp EET-TEEEEEEESHH
T ss_pred EEC-CEEEEEECHHH
T ss_conf 969-98999966899
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=321.79 Aligned_cols=217 Identities=19% Similarity=0.315 Sum_probs=182.4
Q ss_pred CCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCE
Q ss_conf 81799995999995585201125553333222360578748739999458998867899888349789707999999995
Q 000853 649 PLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 728 (1252)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~ 728 (1252)
...++.+|++..+. ...+|+||||.+++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 4 d~~Lev~~l~k~yg-------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~ 68 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQ 68 (240)
T ss_dssp SEEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CEEEEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCC
T ss_conf 60799961899989-------------9888830257888997999999999859999999967888--88038984244
Q ss_pred ECCCCC---C-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCC
Q ss_conf 078343---3-335899736988899999999999998724999999989999999999982-99542223234898887
Q 000853 729 PKVQHT---F-ARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTI-ELDGIKYSLVGLPGVSG 803 (1252)
Q Consensus 729 ~~~~~~---~-~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~ig~~~~~~ 803 (1252)
+..... . +..++|++|+..+++.+||+|++.+.+..+.. .+..++.++++++.+ ++.+..+..+ ..
T Consensus 69 ~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~ 139 (240)
T d1ji0a_ 69 DITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLG-----GT 139 (240)
T ss_dssp ECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBS-----SS
T ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHCHHHHHHCCH-----HH
T ss_conf 3446608888874235567655457763699999988873278----88999999999987417688875854-----33
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEE
Q ss_conf 79889999999999950996889939999999999999999999998779899999458988999972001466439589
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 804 lSgG~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~~l~~gg~~ 883 (1252)
|||||||||+||++|+.+|++|+|||||+|||+.++..+++.++++++.|.||++++|+.. ++...+|++++|.+ |++
T Consensus 140 LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~i 217 (240)
T d1ji0a_ 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQI 217 (240)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEE
T ss_conf 8999999999999998299874003988679999999999999999968998999958899-99996999999989-999
Q ss_pred EEECCCCC
Q ss_conf 99669987
Q 000853 884 IYSGPLGQ 891 (1252)
Q Consensus 884 ~~~g~~~~ 891 (1252)
++.|++.+
T Consensus 218 v~~g~~~e 225 (240)
T d1ji0a_ 218 VLEGKASE 225 (240)
T ss_dssp EEEEEHHH
T ss_pred EEECCHHH
T ss_conf 99848999
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=323.62 Aligned_cols=212 Identities=27% Similarity=0.451 Sum_probs=173.2
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 79999599999558520112555333322236057874873999945899886789988834978970799999999507
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++|+||+|.++. ..+.+|+|||+.+++||.+||+|+||||||||+++|.|... +.+|+|.+||.+.
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEEEEEEECC-----------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCEEEECCEEE
T ss_conf 9299999999089-----------99603742489984999999999999989999999973578--8888999999994
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC-------CCCCCCCCCCCCC
Q ss_conf 83---4333358997369888999999999999987249999999899999999999829-------9542223234898
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE-------LDGIKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~-------l~~~~~~~ig~~~ 800 (1252)
.. ..+++.++||+|++.++ ..|++|++.+.. +..+.++ +.+..+..+ +..-.++.++..+
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~g 137 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQG 137 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTTT
T ss_pred CCCCHHHHHCEEEEEECCCCCC-CCCCCCCCCCCC-----CCCCHHH----HHHHHHHHHHHHHHHHHHCCHHHHCCCCC
T ss_conf 4002465535288982446557-840003522357-----5543888----99999997557888763201344327878
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECC
Q ss_conf 88779889999999999950996889939999999999999999999998779899999458988999972001466439
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgG~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~~l~~g 880 (1252)
..||||||||++|||+|+.+|+|++||||||+||+.++..|++.|+++.+ ++|+|+++|+++ ....+|++++|. +
T Consensus 138 -~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i~vl~-~ 212 (241)
T d2pmka1 138 -AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVME-K 212 (241)
T ss_dssp -TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GGTTSSEEEEEE-T
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHH--HHHHCCEEEEEE-C
T ss_conf -86698898987544344416513556477655598999999999999858-998999978899--998499999998-9
Q ss_pred CEEEEECCCC
Q ss_conf 5899966998
Q 000853 881 GRIIYSGPLG 890 (1252)
Q Consensus 881 g~~~~~g~~~ 890 (1252)
|++++.|++.
T Consensus 213 G~Iv~~G~~~ 222 (241)
T d2pmka1 213 GKIVEQGKHK 222 (241)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
T ss_conf 9999988999
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=316.12 Aligned_cols=218 Identities=24% Similarity=0.332 Sum_probs=174.9
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 79999599999558520112555333322236057874873999945899886789988834978970799999999507
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++||++.++.. .++.+|+|+|+.+++||++||+||||||||||+++|.|... +.+|+|.+||.+.
T Consensus 11 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEECCCC----------CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 69999989988999----------99976744389984998999999999849999999861437--8768998899853
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH-----HHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 83---433335899736988899999999999998724999999989999-----9999999829954222323489888
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAE-----FVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~-----~v~~~l~~l~l~~~~~~~ig~~~~~ 802 (1252)
.. ..+++.++||+|++.+++ .|++|++.+... ......+..+ ...+.++ ++.+..++.++.. ..
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~----~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLT----QKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-GS 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCS----SCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-CS
T ss_pred CHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHCC-CC
T ss_conf 11013788877654045650027-634655454210----1302788999999998999998--5612111367516-76
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCC
Q ss_conf 77988999999999995099688993999999999999999999999877-98999994589889999720014664395
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 803 ~lSgG~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~h~~~~~~~~~~d~i~~l~~gg 881 (1252)
.||||||||++|||+|+.+|+|++||||||+||+.++..+++.|+++.+. ++|+|+++|++ +....+|++++|. +|
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l--~~~~~aDrI~vl~-~G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADHILFLE-GG 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH--HHHHTCSEEEEEE-TT
T ss_pred CCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEEE-CC
T ss_conf 68954704899860445687078716757656853689999999997650698999995979--9998599999998-99
Q ss_pred EEEEECCCCC
Q ss_conf 8999669987
Q 000853 882 RIIYSGPLGQ 891 (1252)
Q Consensus 882 ~~~~~g~~~~ 891 (1252)
++++.|++.+
T Consensus 228 ~iv~~Gt~~e 237 (251)
T d1jj7a_ 228 AIREGGTHQQ 237 (251)
T ss_dssp EEEEEECHHH
T ss_pred EEEEECCHHH
T ss_conf 9999889999
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=313.98 Aligned_cols=193 Identities=22% Similarity=0.390 Sum_probs=172.3
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCC-CCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 605787487399994589988678998883497897079999999950783-4333358997369888999999999999
Q 000853 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-HTFARISGYCEQNDIHSPNITVEESVIF 760 (1252)
Q Consensus 682 ~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~ 760 (1252)
|+|+.+. +|+++|+||||||||||+++|+|... +.+|+|.+||.+... ...++.+|||+|++.++|.+||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCC--CCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-97999997999809999999973999--89628999999988699899285225231443522015576665
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 98724999999989999999999982995422232348988877988999999999995099688993999999999999
Q 000853 761 SAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840 (1252)
Q Consensus 761 ~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ig~~~~~~lSgG~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~ 840 (1252)
+ ++ .....++++++.++++.+||.+..+.. +..|||||||||+|||||+.+|++|+|||||+|||+.++.
T Consensus 94 ~--l~---~~~~~~~~~~v~~~l~~~gl~~~~~~~-----~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 G--LR---NVERVERDRRVREMAEKLGIAHLLDRK-----PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp T--CT---TSCHHHHHHHHHHHHHTTTCTTTTTCC-----GGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred H--HC---CCCHHHHHHHHHHHHHHCCCHHHHHCC-----HHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 3--23---367788999999999863837566579-----4448999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 999999999877-9899999458988999972001466439589996699
Q 000853 841 IVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 841 ~i~~~l~~~~~~-g~tvi~~~h~~~~~~~~~~d~i~~l~~gg~~~~~g~~ 889 (1252)
.+++.++++.+. |.|||+++|++. ++...+|++++|. +|+++..|++
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~-~G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVML-NGRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEEECH
T ss_conf 9999999998743976999818999-9999699999998-9999999069
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=309.59 Aligned_cols=213 Identities=24% Similarity=0.339 Sum_probs=173.5
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 79999599999558520112555333322236057874873999945899886789988834978970799999999507
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++||++.++. .+..+|+|+|+.+++||.+||+||||||||||+++|+|... +.+|+|.+||.+.
T Consensus 13 ~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 79 (253)
T d3b60a1 13 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDL 79 (253)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEET
T ss_pred EEEEEEEEEEECC-----------CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCCCC
T ss_conf 7999988999299-----------99763533289985999999999999859999999862168--8846898788012
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCCC
Q ss_conf 83---4333358997369888999999999999987249999999899999999999829954-------2223234898
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~ig~~~ 800 (1252)
.. ..+++.++||+|++.++ ..|+++++.+.. +...+.+ .++++++..++.+ -.++.++..
T Consensus 80 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~----~~~~~~~----~i~~a~~~~~l~~~i~~l~~gl~t~~~~~- 149 (253)
T d3b60a1 80 REYTLASLRNQVALVSQNVHLF-NDTVANNIAYAR----TEEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGEN- 149 (253)
T ss_dssp TTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTT----TSCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred CHHHHHHHHHEEEEEEECCCCC-CCCHHHHHHHCC----CCCCCHH----HHHHHHHHHHHHHHHHHCCCCCHHHHCCC-
T ss_conf 1110665420687995025447-862024332057----2208999----99999999817999973554410143488-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECC
Q ss_conf 88779889999999999950996889939999999999999999999998779899999458988999972001466439
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgG~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~~l~~g 880 (1252)
...||||||||++|||+|+.+|+||+||||||+||+.++..|++.|+++.+ ++|+|+++|+++ ....+|+|++|. +
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~v~vl~-~ 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVE-D 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEE-T
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCEEEEEE-C
T ss_conf 898499999999999999549988995164445898899999999987522-788999988799--998599999998-9
Q ss_pred CEEEEECCCC
Q ss_conf 5899966998
Q 000853 881 GRIIYSGPLG 890 (1252)
Q Consensus 881 g~~~~~g~~~ 890 (1252)
|++++.|++.
T Consensus 226 G~Iv~~G~~~ 235 (253)
T d3b60a1 226 GIIVERGTHS 235 (253)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
T ss_conf 9999988999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=309.56 Aligned_cols=214 Identities=26% Similarity=0.396 Sum_probs=176.1
Q ss_pred CEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEE
Q ss_conf 17999959999955852011255533332223605787487399994589988678998883497897079999999950
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
-.++++|++|.++. ..+.+|+|||+.+++||.+||+|+||||||||+++|+|... +.+|+|.+||.+
T Consensus 15 g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 81 (255)
T d2hyda1 15 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHN 81 (255)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEE
T ss_pred CEEEEEEEEEEECC-----------CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEE
T ss_conf 87999988999599-----------99760644389983998999988999809999999971278--630001539987
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCC
Q ss_conf 783---4333358997369888999999999999987249999999899999999999829954-------222323489
Q 000853 730 KVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLP 799 (1252)
Q Consensus 730 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~ig~~ 799 (1252)
... ..+++.++||+|++.++ ..||+|++.|.. +....+ .+.++++..++.+ -.++.++..
T Consensus 82 i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g~-----~~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~~ 151 (255)
T d2hyda1 82 IKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGR-----PTATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGER 151 (255)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGC-----SSCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred CCCCCHHHHHHEEEEEECCCCCC-CCCHHHHHHCCC-----CCCCHH----HHHHHHHHHCCHHHHHHCCCCCCCHHCCC
T ss_conf 53078888634145651015689-987999985158-----679999----99999999697999973624201033388
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEEC
Q ss_conf 88877988999999999995099688993999999999999999999999877989999945898899997200146643
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 800 ~~~~lSgG~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~~l~~ 879 (1252)
+ ..||||||||++|||+|+.+|++++||||||+||+.++..|++.|+++.+ ++|+|+++|+++ ....+|++++|.
T Consensus 152 g-~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~--~~~~~D~ii~l~- 226 (255)
T d2hyda1 152 G-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVIE- 226 (255)
T ss_dssp G-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG--GTTTCSEEEEEE-
T ss_pred C-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHH--HHHHCCEEEEEE-
T ss_conf 8-98499999999999998559989998376544797799999999998753-888999968999--998599999998-
Q ss_pred CCEEEEECCCCC
Q ss_conf 958999669987
Q 000853 880 GGRIIYSGPLGQ 891 (1252)
Q Consensus 880 gg~~~~~g~~~~ 891 (1252)
+|++++.|++.+
T Consensus 227 ~G~iv~~G~~~e 238 (255)
T d2hyda1 227 NGHIVETGTHRE 238 (255)
T ss_dssp TTEEEEEECHHH
T ss_pred CCEEEEECCHHH
T ss_conf 999999889999
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=320.60 Aligned_cols=212 Identities=26% Similarity=0.414 Sum_probs=172.4
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECC
Q ss_conf 99995999995585201125553333222360578748739999458998867899888349789707999999995078
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++||+|.|+. .+.+|+|||+.++|||++||+||||||||||+++|+|...+ .+|+|.+||.+..
T Consensus 2 le~knvsf~Y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYDD------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSSS------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEECCC------------CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCC--CCCEEEECCEEEC
T ss_conf 799988998799------------98414225899859999999999999799999999996098--9877988998844
Q ss_pred C---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC-------CCCCCCCCCCCCCC
Q ss_conf 3---4333358997369888999999999999987249999999899999999999829-------95422232348988
Q 000853 732 Q---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE-------LDGIKYSLVGLPGV 801 (1252)
Q Consensus 732 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~-------l~~~~~~~ig~~~~ 801 (1252)
. ..+++.++||+|++.+++. |++|++.+... ......+ +++.++..+ +.+..++.+|..+
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred CCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCCC----CCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf 24678887436797566545785-34543012445----5542356----77899999755542037421015236878-
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCC
Q ss_conf 87798899999999999509968899399999999999999999999987798999994589889999720014664395
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgG~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~~l~~gg 881 (1252)
..||||||||++|||||+.+|+||+||||||+||+.++..+++.|+++++ ++|+|+++|++ +....+|++++|. +|
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l--~~~~~~D~i~vl~-~G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHRL--STIVDADKIYFIE-KG 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT-TSEEEEECCSH--HHHHHCSEEEEEE-TT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCH--HHHHHCCEEEEEE-CC
T ss_conf 98799999999999998529989996588655698899999887888717-99899997879--9998499999998-99
Q ss_pred EEEEECCCCC
Q ss_conf 8999669987
Q 000853 882 RIIYSGPLGQ 891 (1252)
Q Consensus 882 ~~~~~g~~~~ 891 (1252)
++++.|++.+
T Consensus 214 ~iv~~G~~~e 223 (242)
T d1mv5a_ 214 QITGSGKHNE 223 (242)
T ss_dssp EECCCSCHHH
T ss_pred EEEEECCHHH
T ss_conf 9999999999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=308.85 Aligned_cols=192 Identities=22% Similarity=0.358 Sum_probs=166.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 999857999996899989819989998326899998912787655-4238876654456888988999999976128998
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~-~~~~~yv~Q~d~l~~~lTVrEnL~f~a~l~~~~~ 79 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++....+ ++.++||+|++.+++++||+||+.|++.+++...
T Consensus 34 ~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~ 110 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK 110 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCH
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHCCCCH
T ss_conf 99999999982999999997589998---787999164135477000158998003353422209999999998739999
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 87504799999985088999724678888763110012129999999298443554225886544672322134899988
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~gLSGGQKrRLsIA~aL 159 (1252)
.+ .+..++++++.+||++..|..+.+ ||||||||++|||||
T Consensus 111 -----~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSGGq~QRvaiAraL 151 (239)
T d1v43a3 111 -----DE-----------------------------IDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAI 151 (239)
T ss_dssp -----HH-----------------------------HHHHHHHHHHHTTCGGGTTSCTTT-----CCSSCHHHHHHHHHH
T ss_pred -----HH-----------------------------HHHHHHHHHHHCCCHHHHCCCHHH-----CCHHHHHHHHHHHHH
T ss_conf -----99-----------------------------999999999875985566099546-----999998899997664
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 3298173662698663859899999999998572698899993489826883003189972980887578103899
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 160 ~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~~~~~~~ 235 (1252)
+.+|+|++|||||||||+.++..+++.++++.+..+.|+++ ++|...++.+++|+|++|.+|++++.|++.++..
T Consensus 152 ~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~-vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 152 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY-VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 04998243068866689899989999999998731980799-9489999998699999998999999859999986
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=309.03 Aligned_cols=192 Identities=21% Similarity=0.368 Sum_probs=167.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 999857999996899989819989998326899998912787655-4238876654456888988999999976128998
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~-~~~~~yv~Q~d~l~~~lTVrEnL~f~a~l~~~~~ 79 (1252)
+++|+||||||||||+++|+|...|+ +|+|.+||.++....+ ++.++||+|++.+++.+||+||+.|+..+++...
T Consensus 28 i~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~ 104 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK 104 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC---------------------
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCH
T ss_conf 99999899982999999996587888---888999999778886444322234334202643337889789998759988
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 87504799999985088999724678888763110012129999999298443554225886544672322134899988
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~gLSGGQKrRLsIA~aL 159 (1252)
. + .+..++++++.++|++..|..+.+ ||||||||++|||||
T Consensus 105 ~--------------------~--------------~~~~v~~~l~~~~l~~~~~~~~~~-----LSGGqkQRvaiAraL 145 (232)
T d2awna2 105 E--------------------V--------------INQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTL 145 (232)
T ss_dssp C--------------------H--------------HHHHHHHHHHHC--------------------------CHHHHH
T ss_pred H--------------------H--------------HHHHHHHHHHHCCCHHHHHCCHHH-----CCHHHHHHHHHHHHH
T ss_conf 9--------------------9--------------999999999757886566489656-----999999999999997
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 3298173662698663859899999999998572698899993489826883003189972980887578103899
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 160 ~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~~~~~~~ 235 (1252)
+.+|++++|||||||||+.++.++++.++++.+..+.|++++ +|...++..++|+|++|.+|++++.|++.++.+
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~v-THd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV-THDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEE-ESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE-ECCHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 039988997588878898899899999999987429879999-489999999699999997999999808999973
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=306.77 Aligned_cols=189 Identities=22% Similarity=0.321 Sum_probs=165.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 999857999996899989819989998326899998912787655-4238876654456888988999999976128998
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~-~~~~~yv~Q~d~l~~~lTVrEnL~f~a~l~~~~~ 79 (1252)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++....+ ++.++||+|+..+++.+||+||+.|+..+++...
T Consensus 28 ~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~ 104 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD 104 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCH
T ss_conf 99999899982999999996476888---788999567346521657405615121111746657788888776405538
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 87504799999985088999724678888763110012129999999298443554225886544672322134899988
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~gLSGGQKrRLsIA~aL 159 (1252)
+..++++++.++|.+..|..+++ ||||||||++|||||
T Consensus 105 -------------------------------------~~~~~~~l~~~~l~~~~~~~~~~-----LSGG~~QRvaiAraL 142 (229)
T d3d31a2 105 -------------------------------------PKRVLDTARDLKIEHLLDRNPLT-----LSGGEQQRVALARAL 142 (229)
T ss_dssp -------------------------------------HHHHHHHHHHTTCTTTTTSCGGG-----SCHHHHHHHHHHHHT
T ss_pred -------------------------------------HHHHHHHHHHHCCHHHHHCCHHH-----CCHHHHCCHHHHHHH
T ss_conf -------------------------------------99999999982565557589554-----799984014030434
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 3298173662698663859899999999998572698899993489826883003189972980887578103899
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 160 ~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~~~~~~~ 235 (1252)
+.+|++++|||||||||+.++.++++.++++.+..+.|+++ ++|...++..++|+|++|.+|++++.|++.++.+
T Consensus 143 ~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~-vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~ 217 (229)
T d3d31a2 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH-ITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (229)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE-EESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred HCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 43677144347876799899999999999998647968999-7499999999699999997999999869999986
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=307.10 Aligned_cols=190 Identities=24% Similarity=0.379 Sum_probs=163.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 999857999996899989819989998326899998912787655-4238876654456888988999999976128998
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~-~~~~~yv~Q~d~l~~~lTVrEnL~f~a~l~~~~~ 79 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++....+ ++.++||+|++.++|++||+||+.|+.+ ..
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~--~~-- 98 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR--NV-- 98 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCT--TS--
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHHHHC--CC--
T ss_conf 99999799980999999997399989---628999999988699899285225231443522015576665323--36--
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 87504799999985088999724678888763110012129999999298443554225886544672322134899988
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~gLSGGQKrRLsIA~aL 159 (1252)
. +.+ .+..++++++.+||.+..+..+.+ ||||||||++||||+
T Consensus 99 --~------~~~------------------------~~~~v~~~l~~~gl~~~~~~~~~~-----LSGG~kQRvaiAral 141 (240)
T d2onka1 99 --E------RVE------------------------RDRRVREMAEKLGIAHLLDRKPAR-----LSGGERQRVALARAL 141 (240)
T ss_dssp --C------HHH------------------------HHHHHHHHHHTTTCTTTTTCCGGG-----SCHHHHHHHHHHHHH
T ss_pred --C------HHH------------------------HHHHHHHHHHHCCCHHHHHCCHHH-----CCHHHHHHHHHHHHH
T ss_conf --7------788------------------------999999999863837566579444-----899998999998777
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 3298173662698663859899999999998572698899993489826883003189972980887578103899
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 160 ~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~~~~~~~ 235 (1252)
+.+|++++|||||||||+.++..+++.++.+.+..+.|+++ ++|...++..++|+|++|++|++++.|+..++.+
T Consensus 142 ~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~-vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH-VTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE-EESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEEECHHHHHC
T ss_conf 51677067528655588799999999999998743976999-8189999999699999998999999906999832
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=304.27 Aligned_cols=192 Identities=24% Similarity=0.353 Sum_probs=165.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC-------CCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99985799999689998981998999832689999891278765-------54238876654456888988999999976
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV-------PQKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~-------~~~~~~yv~Q~d~l~~~lTVrEnL~f~a~ 73 (1252)
+++|+||||||||||+++|+|...|+ +|+|.++|.++.... .++.++||+|++.+++.+||+||+.|+..
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~ 107 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHH
T ss_conf 99999999980999999996487889---898999999803566444245322551200221222310116676330687
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 12899887504799999985088999724678888763110012129999999298443554225886544672322134
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 l~~~~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~gLSGGQKrRL 153 (1252)
+++... .+ .+..++++++.++|++..|.++++ ||||||||+
T Consensus 108 ~~~~~~-----~e-----------------------------~~~~v~~~l~~~~l~~~~~~~p~~-----LSGGqkQRv 148 (240)
T d1g2912 108 LRKVPR-----QE-----------------------------IDQRVREVAELLGLTELLNRKPRE-----LSGGQRQRV 148 (240)
T ss_dssp HTTCCH-----HH-----------------------------HHHHHHHHHHHHTCGGGTTCCGGG-----SCHHHHHHH
T ss_pred HCCCCH-----HH-----------------------------HHHHHHHHHHHCCCHHHHCCCHHH-----CCHHHHHHH
T ss_conf 729998-----99-----------------------------999999999875996676299334-----999999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHH
Q ss_conf 89998832981736626986638598999999999985726988999934898268830031899729808875781038
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 154 sIA~aL~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~~~~~ 233 (1252)
+|||||+.+|+|++|||||+|||+.++..+++.++++.+..|.|+++ ++|..+++.+++|+|++|.+|++++.|++.++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~-vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el 227 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY-VTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 99999826998898258876569899989999999998636988999-95999999996999999989999998599999
Q ss_pred HH
Q ss_conf 99
Q 000853 234 CK 235 (1252)
Q Consensus 234 ~~ 235 (1252)
..
T Consensus 228 ~~ 229 (240)
T d1g2912 228 YD 229 (240)
T ss_dssp HH
T ss_pred HH
T ss_conf 82
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=301.15 Aligned_cols=190 Identities=22% Similarity=0.314 Sum_probs=165.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC------CCEEEEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 999857999996899989819989998326899998912787655------42388766544568889889999999761
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP------QKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~------~~~~~yv~Q~d~l~~~lTVrEnL~f~a~l 74 (1252)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... |+.++||+|+..+++.+||+||+.|+..+
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~ 109 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99998999898889999875886366---773288676852087555115541664302252227996499999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 28998875047999999850889997246788887631100121299999992984435542258865446723221348
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~gLSGGQKrRLs 154 (1252)
++.... + .+..++++|+.+||++..|..+++ ||||||||++
T Consensus 110 ~~~~~~-----~-----------------------------~~~~v~~~L~~vgL~~~~~~~~~~-----LSGG~~QRva 150 (240)
T d3dhwc1 110 DNTPKD-----E-----------------------------VKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVA 150 (240)
T ss_dssp TTCCTT-----H-----------------------------HHHHHHHHHHHHSTTTTTSSCBSC-----CCHHHHHHHH
T ss_pred CCCCHH-----H-----------------------------HHHHHHHHHHHCCCCHHHHCCHHH-----CCHHHHHHHH
T ss_conf 499989-----9-----------------------------999999999976990355489434-----9999998999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHH
Q ss_conf 9998832981736626986638598999999999985726988999934898268830031899729808875781038
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 155 IA~aL~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~~~~~ 233 (1252)
|||||+.+|+++++||||+|||+.++..+++.|+.+.+..+.|+++ ++|...++..++|+|++|++|++++.|+++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~-vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILL-ITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEE-EBSCHHHHHHHCSEEEEEETTEEEEEEETTTT
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 8640105898687446556589888567999999998646978999-83899999986999999979999998799999
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=302.39 Aligned_cols=192 Identities=21% Similarity=0.283 Sum_probs=164.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC------CCCEEEEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99985799999689998981998999832689999891278765------542388766544568889889999999761
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~------~~~~~~yv~Q~d~l~~~lTVrEnL~f~a~l 74 (1252)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.++||.|+..++|++||+|||.|+...
T Consensus 33 ~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~ 109 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN 109 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999899980999999997586888---745999999951373111531204514773043346666577776655676
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 28998875047999999850889997246788887631100121299999992984435542258865446723221348
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~gLSGGQKrRLs 154 (1252)
++... .+ .+..++++++.+||.+..|...++ ||||||||++
T Consensus 110 ~~~~~-----~~-----------------------------~~~~v~~~l~~~gL~~~~~~~p~~-----LSGGqkQRva 150 (242)
T d1oxxk2 110 MKMSK-----EE-----------------------------IRKRVEEVAKILDIHHVLNHFPRE-----LSGAQQQRVA 150 (242)
T ss_dssp SSCCH-----HH-----------------------------HHHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHH
T ss_pred HCCCH-----HH-----------------------------HHHHHHHHHHHCCHHHHHHCCHHH-----CCHHHHHHHH
T ss_conf 13799-----99-----------------------------999999998665917666489545-----9999985899
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHH
Q ss_conf 99988329817366269866385989999999999857269889999348982688300318997298088757810389
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 155 IA~aL~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~~~~~~ 234 (1252)
|||||+.+|+++++||||+|||+.++.++++.++++.+..+.|+++ ++|...++.+++|+|++|++|+++..|++.++.
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~-vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV-VSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEE-EESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 8757760466145447866799899889989999998635987999-979999999969999999899999986999998
Q ss_pred H
Q ss_conf 9
Q 000853 235 K 235 (1252)
Q Consensus 235 ~ 235 (1252)
.
T Consensus 230 ~ 230 (242)
T d1oxxk2 230 D 230 (242)
T ss_dssp H
T ss_pred H
T ss_conf 6
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=297.41 Aligned_cols=193 Identities=23% Similarity=0.362 Sum_probs=155.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989998326899998912787655---42388766544568889889999999761289
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~---~~~~~yv~Q~d~l~~~lTVrEnL~f~a~l~~~ 77 (1252)
.++|+||||||||||+++|+|.++|+ +|+|.+||.++..... ++.++||+|++.+| +.||+|||.|+...
T Consensus 31 ~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~--- 103 (241)
T d2pmka1 31 VIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLANPG--- 103 (241)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTSTT---
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC---CCEEEECCEEECCCCHHHHHCEEEEEECCCCCC-CCCCCCCCCCCCCC---
T ss_conf 99999999998999999997357888---889999999944002465535288982446557-84000352235755---
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 98875047999999850889997246788887631100121299999992984435542258865446723221348999
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~gLSGGQKrRLsIA~ 157 (1252)
.+.+++..++..+++.. ....++++.+|.+|+. +..||||||||++|||
T Consensus 104 ----------------------~~~~~~~~~~~~~~~~~--------~i~~~~~~~~t~i~~~-g~~LSGGq~QRvalAR 152 (241)
T d2pmka1 104 ----------------------MSVEKVIYAAKLAGAHD--------FISELREGYNTIVGEQ-GAGLSGGQRQRIAIAR 152 (241)
T ss_dssp ----------------------CCHHHHHHHHHHHTCHH--------HHTTSTTGGGSBCSTT-TTCCCHHHHHHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHHH--------HHHHHHCCHHHHCCCC-CCCCCHHHHHHHHHHH
T ss_conf ----------------------43888999999975578--------8876320134432787-8866988989875443
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 883298173662698663859899999999998572698899993489826883003189972980887578103899
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 158 aL~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~~~~~~~ 235 (1252)
|++.+|+|++||||||+||+.++..|++.|+.+. .++|+++..|+. +..+.+|+|++|++|+++++|++.++.+
T Consensus 153 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~itH~l--~~~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 153 ALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRL--STVKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp HHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSG--GGGTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH--CCCEEEEEECCH--HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 4441651355647765559899999999999985--899899997889--9998499999998999999889999982
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.8e-45 Score=294.30 Aligned_cols=189 Identities=19% Similarity=0.270 Sum_probs=158.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC-------CEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9998579999968999898199899983268999989127876554-------238876654456888988999999976
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ-------KTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~-------~~~~yv~Q~d~l~~~lTVrEnL~f~a~ 73 (1252)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.....+ +.++||.|+..+++.+||+||+.++..
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~ 109 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLI 109 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHCCCCCCCC---CCEEEECCEECCCCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHH
T ss_conf 99998899998216557506887777---662699999857688555123125557788041241768668887757888
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCH
Q ss_conf 1289988750479999998508899972467888876311001212999999929844-355422588654467232213
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDI-CADTIVGDPMRRGVSGGQKKR 152 (1252)
Q Consensus 74 l~~~~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~-~~~T~VG~~~~~gLSGGQKrR 152 (1252)
++..+.... .+ + ...+.+.++.++|++ ..+..+.+ ||||||||
T Consensus 110 ~~~~~~~~~--~~--~---------------------------~~~~~~~l~~~~L~~~~~~~~p~~-----LSGGqkQR 153 (230)
T d1l2ta_ 110 FKYRGAMSG--EE--R---------------------------RKRALECLKMAELEERFANHKPNQ-----LSGGQQQR 153 (230)
T ss_dssp TCCSSCCCH--HH--H---------------------------HHHHHHHHHHTTCCGGGTTCCGGG-----SCHHHHHH
T ss_pred HHCCCCCCH--HH--H---------------------------HHHHHHHHHHHCHHHHHHCCCHHH-----CCHHHHHH
T ss_conf 722478999--99--9---------------------------999999887624234553488023-----89999999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCC
Q ss_conf 489998832981736626986638598999999999985726988999934898268830031899729808875781
Q 000853 153 LTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPR 230 (1252)
Q Consensus 153 LsIA~aL~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~~ 230 (1252)
++|||||+.+|++++||||||+||+.++..+++.|+++.+..+.|++++.|.. .. .+.+|+|++|.+|++++.|+.
T Consensus 154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~-a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-NV-ARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH-HH-HTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCH-HH-HHHCCEEEEEECCEEEEECCC
T ss_conf 99875652278889946876546989999999999999984399999987888-99-986998999989999995257
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-45 Score=294.44 Aligned_cols=196 Identities=20% Similarity=0.316 Sum_probs=156.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989998326899998912787655---42388766544568889889999999761289
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~---~~~~~yv~Q~d~l~~~lTVrEnL~f~a~l~~~ 77 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.+||.++..... ++.++||+|++.+| ..||+||+.|+...+
T Consensus 42 ~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~g~~~~-- 115 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF-GRSLQENIAYGLTQK-- 115 (251)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCC-SSBHHHHHHCSCSSC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCHHHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHCCC--
T ss_conf 99999999984999999986143787---689988998531101378887765404565002-763465545421013--
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 98875047999999850889997246788887631100121299999992984435542258865446723221348999
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~gLSGGQKrRLsIA~ 157 (1252)
....+. ..++...+. ...+.+|+++.+|.+|+ .+..||||||||++|||
T Consensus 116 ----~~~~~~------------------~~~~~~~~~--------~~~i~~l~~g~~~~i~~-~~~~LSGGqkQRvaiAR 164 (251)
T d1jj7a_ 116 ----PTMEEI------------------TAAAVKSGA--------HSFISGLPQGYDTEVDE-AGSQLSGGQRQAVALAR 164 (251)
T ss_dssp ----CCHHHH------------------HHHHHHHTC--------HHHHHTSTTGGGCBCCS-SCSSSCHHHHHHHHHHH
T ss_pred ----CHHHHH------------------HHHHHHHHH--------HHHHHHCCCCCHHHHHC-CCCCCCHHHCEEEEEEE
T ss_conf ----027889------------------999999989--------99998561211136751-67668954704899860
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 883298173662698663859899999999998572698899993489826883003189972980887578103899
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 158 aL~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~~~~~~~ 235 (1252)
|++.+|+|++||||||+||+.++.++++.|+.+.+..++|+++..|. .+..+.+|+|++|++|+++++|++.++.+
T Consensus 165 al~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~--l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 165 ALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSC--HHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC--HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 44568707871675765685368999999999765069899999597--99998599999998999999889999985
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.4e-45 Score=295.74 Aligned_cols=193 Identities=25% Similarity=0.384 Sum_probs=156.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989998326899998912787655---42388766544568889889999999761289
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~---~~~~~yv~Q~d~l~~~lTVrEnL~f~a~l~~~ 77 (1252)
.++|+||||||||||+++|+|.++|+ +|+|.++|.++..... |+.++||+|++.+| ..||+|||.|+...
T Consensus 46 ~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g~~~--- 118 (255)
T d2hyda1 46 TVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGRPT--- 118 (255)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGCSS---
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC---CCCCCCCCEECCCCCHHHHHHEEEEEECCCCCC-CCCHHHHHHCCCCC---
T ss_conf 99998899980999999997127863---000153998753078888634145651015689-98799998515867---
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 98875047999999850889997246788887631100121299999992984435542258865446723221348999
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~gLSGGQKrRLsIA~ 157 (1252)
...++..+++..+++. +. +..|+++.+|.+|+ .+..||||||||++|||
T Consensus 119 ----------------------~~~~~~~~al~~~~l~-----~~---i~~lp~gl~t~i~~-~g~~LSgGq~QRi~iAR 167 (255)
T d2hyda1 119 ----------------------ATDEEVVEAAKMANAH-----DF---IMNLPQGYDTEVGE-RGVKLSGGQKQRLSIAR 167 (255)
T ss_dssp ----------------------CCHHHHHHHHHHTTCH-----HH---HHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHCCH-----HH---HHHCCCCCCCHHCC-CCCCCCHHHHHHHHHHH
T ss_conf ----------------------9999999999996979-----99---97362420103338-88984999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 883298173662698663859899999999998572698899993489826883003189972980887578103899
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 158 aL~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~~~~~~~ 235 (1252)
|++.+|+|++||||||+||+.++..+++.++.+. .++|+|+..|. .+....+|+|++|++|+++..|++.++.+
T Consensus 168 al~~~p~ililDEpts~LD~~t~~~i~~~l~~l~--~~~TvI~itH~--~~~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 168 IFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHR--LSTITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSS--GGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEEECC--HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9855998999837654479779999999999875--38889999689--99998599999998999999889999986
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.1e-44 Score=290.62 Aligned_cols=194 Identities=24% Similarity=0.351 Sum_probs=154.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989998326899998912787655---42388766544568889889999999761289
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~---~~~~~yv~Q~d~l~~~lTVrEnL~f~a~l~~~ 77 (1252)
.++|+||||||||||+++|+|.++|+ +|+|.+||.++..... ++.++||+|++.+ ...|+++|+.++..-.
T Consensus 43 ~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-~~~ti~~n~~~~~~~~-- 116 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHL-FNDTVANNIAYARTEE-- 116 (253)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCC-CSSBHHHHHHTTTTSC--
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHEEEEEEECCCC-CCCCHHHHHHHCCCCC--
T ss_conf 99999999985999999986216888---46898788012111066542068799502544-7862024332057220--
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 98875047999999850889997246788887631100121299999992984435542258865446723221348999
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~gLSGGQKrRLsIA~ 157 (1252)
.+.++..+++..+++. |. +-.|+++.+|.+|+ .+..|||||||||+|||
T Consensus 117 ----------------------~~~~~i~~a~~~~~l~-----~~---i~~l~~gl~t~~~~-~~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 117 ----------------------YSREQIEEAARMAYAM-----DF---INKMDNGLDTIIGE-NGVLLSGGQRQRIAIAR 165 (253)
T ss_dssp ----------------------CCHHHHHHHHHTTTCH-----HH---HHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHH-----HH---HHHCCCCCHHHHCC-CCCCCCHHHHHHHHHHH
T ss_conf ----------------------8999999999998179-----99---97355441014348-88984999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 883298173662698663859899999999998572698899993489826883003189972980887578103899
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 158 aL~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~~~~~~~ 235 (1252)
|++.+|+|++||||||+||+.++..+++.|+++. .++|+++..|. .+....+|+|++|++|+++++|++.++.+
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~itH~--l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHR--LSTIEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH--TTSEEEEECSC--GGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECC--HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9954998899516444589889999999998752--27889999887--99998599999998999999889999986
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.8e-44 Score=287.39 Aligned_cols=193 Identities=25% Similarity=0.266 Sum_probs=165.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 99985799999689998981998999832689999891278765--5423887665445688898899999997612899
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV--PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~--~~~~~~yv~Q~d~l~~~lTVrEnL~f~a~l~~~~ 78 (1252)
+++|+||||||||||+++|+|.+.|+ +|+|.++|.++.+.. .++.++||+|.+.+++++|++||+.|.+.+++..
T Consensus 30 i~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~ 106 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS 106 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99999999999999999996698878---887999867244683988721867500154687866778889899861799
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 88750479999998508899972467888876311001212999999929844355422588654467232213489998
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~gLSGGQKrRLsIA~a 158 (1252)
. .+. +..++..++.++|.+..+.++++ ||||||||++||||
T Consensus 107 ~-----~~~-----------------------------~~~~~~~l~~~~l~~~~~~~~~~-----lSgG~~qrv~iA~a 147 (238)
T d1vpla_ 107 S-----SEI-----------------------------EEMVERATEIAGLGEKIKDRVST-----YSKGMVRKLLIARA 147 (238)
T ss_dssp H-----HHH-----------------------------HHHHHHHHHHHCCGGGGGSBGGG-----CCHHHHHHHHHHHH
T ss_pred H-----HHH-----------------------------HHHHHHHHHHCCCHHHHHHHHHH-----CCHHHHHHHHHHHH
T ss_conf 8-----999-----------------------------99999999867978888504533-----79989899999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHHHH
Q ss_conf 8329817366269866385989999999999857269889999348982688300318997298088757810389987
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFF 237 (1252)
Q Consensus 159 L~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~~~~~~~~f 237 (1252)
++.+|+|++|||||+|||+.++.++++.++.++. .|.|++++ +|...++..++|+|++|++|+++..|+++++...+
T Consensus 148 l~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~~-tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 148 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVS-SHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEE-ECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEE-ECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 8659998873379889798999999999999996-59989999-59899999969999999899999992899998652
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.4e-45 Score=296.67 Aligned_cols=194 Identities=21% Similarity=0.332 Sum_probs=152.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989998326899998912787655---42388766544568889889999999761289
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~---~~~~~yv~Q~d~l~~~lTVrEnL~f~a~l~~~ 77 (1252)
.++|+||||||||||+++|+|.++|+ +|+|.+||.++..... ++.++||+|++.+|+ .||+||+.++....
T Consensus 30 ~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~-- 103 (242)
T d1mv5a_ 30 IIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGD-- 103 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTSC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEECCEEECCCCHHHHHHHEEEECCCCCCCC-CCHHHHEECCCCCC--
T ss_conf 99999999997999999999960989---8779889988442467888743679756654578-53454301244555--
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 98875047999999850889997246788887631100121299999992984435542258865446723221348999
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~gLSGGQKrRLsIA~ 157 (1252)
....+. .+++....... ....+++..+|.+|+. +..||||||||++|||
T Consensus 104 ----~~~~~~------------------~~~~~~~~~~~--------~~~~~~~~~~~~i~~~-g~~LSGGqkQRv~iAR 152 (242)
T d1mv5a_ 104 ----YTDEDL------------------WQVLDLAFARS--------FVENMPDQLNTEVGER-GVKISGGQRQRLAIAR 152 (242)
T ss_dssp ----SCHHHH------------------HHHHHHHTCTT--------TTTSSTTGGGCEESTT-SBCCCHHHHHHHHHHH
T ss_pred ----CCHHHH------------------HHHHHHHHHHH--------HHCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHH
T ss_conf ----423567------------------78999997555--------4203742101523687-8987999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 883298173662698663859899999999998572698899993489826883003189972980887578103899
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 158 aL~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~~~~~~~ 235 (1252)
|++.+|+|++||||||+||+.++..+++.|+.+. .++|+++..|. .+....+|+|++|++|++++.|++.++.+
T Consensus 153 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~itH~--l~~~~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 153 AFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHR--LSTIVDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp HHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCS--HHHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECC--HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9852998999658865569889999988788871--79989999787--99998499999998999999999999986
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.5e-44 Score=289.80 Aligned_cols=189 Identities=23% Similarity=0.377 Sum_probs=156.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC----CCEEEEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 999857999996899989819989998326899998912787655----4238876654456888988999999976128
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP----QKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~----~~~~~yv~Q~d~l~~~lTVrEnL~f~a~l~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|+..+++.+||+||+.+++..+.
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~ 110 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK 110 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 99999999985999999996788888---038984244344660888887423556765545776369999998887327
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 998875047999999850889997246788887631100121299999992-9844355422588654467232213489
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKIL-GLDICADTIVGDPMRRGVSGGQKKRLTT 155 (1252)
Q Consensus 77 ~~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~l-gL~~~~~T~VG~~~~~gLSGGQKrRLsI 155 (1252)
. + + +. +...+.+++.+ +|.+..+..+++ ||||||||++|
T Consensus 111 ~--~-~---~~-----------------------------~~~~~~~~~~~~~l~~~~~~~~~~-----LSGG~~Qrv~i 150 (240)
T d1ji0a_ 111 D--K-E---GI-----------------------------KRDLEWIFSLFPRLKERLKQLGGT-----LSGGEQQMLAI 150 (240)
T ss_dssp C--S-S---HH-----------------------------HHHHHHHHHHCHHHHTTTTSBSSS-----SCHHHHHHHHH
T ss_pred C--H-H---HH-----------------------------HHHHHHHHHHHHCHHHHHHCCHHH-----CCHHHHHHHHH
T ss_conf 8--8-8---99-----------------------------999999998741768887585433-----89999999999
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHH
Q ss_conf 9988329817366269866385989999999999857269889999348982688300318997298088757810389
Q 000853 156 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 156 A~aL~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~~~~~~ 234 (1252)
|||++.+|++++|||||+|||+.++.++++.++++.. .|.|+++ ++|...++.+++|+|++|.+|++++.|++.++.
T Consensus 151 AraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~-~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 151 GRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILL-VEQNALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEE-EESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 9999829987400398867999999999999999996-8998999-958899999969999999899999984899984
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.6e-44 Score=286.39 Aligned_cols=204 Identities=25% Similarity=0.338 Sum_probs=164.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC----CEEEEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 9998579999968999898199899983268999989127876554----238876654456888988999999976128
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ----KTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~----~~~~yv~Q~d~l~~~lTVrEnL~f~a~l~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.+++...++ ..++|++|+..+++++||+||+.+++..++
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~ 108 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPG 108 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCC
T ss_conf 99999999984999999997797688---737999999664056999998338725776424788742321430133303
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99887504799999985088999724678888763110012129999999298443554225886544672322134899
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~gLSGGQKrRLsIA 156 (1252)
.... ...- .....+ .+.+. ...++++++.+++.+..|..+++ ||||||||++||
T Consensus 109 ~~~~-------~~~~-~~~~~~-~~~~~------------~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~Qrv~iA 162 (254)
T d1g6ha_ 109 ESPL-------NSLF-YKKWIP-KEEEM------------VEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIG 162 (254)
T ss_dssp SCHH-------HHHH-HCSSCC-CCHHH------------HHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHH
T ss_pred CCCH-------HHHH-HHCCCC-CHHHH------------HHHHHHHHHHCCCCHHCCCCHHH-----CCCHHHHHHHHH
T ss_conf 4504-------5665-421353-28999------------99999998761963020595356-----991888899999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 9883298173662698663859899999999998572698899993489826883003189972980887578103899
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 157 ~aL~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~~~~~~~ 235 (1252)
||++.+|++++|||||+|||+.++.++++.++.+.. .|.|+++ ++|...++.+++|+|++|++|+++..|+.++..+
T Consensus 163 raL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~-vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 163 RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLI-IEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-ECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred HHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 999759272324397656999999999999999997-8998999-9476999998699999996998999966899865
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.7e-44 Score=285.88 Aligned_cols=195 Identities=24% Similarity=0.378 Sum_probs=166.2
Q ss_pred CCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCC---CCCCCEEEEECCCCCCCCCCCH
Q ss_conf 2223605787487399994589988678998883497897079999999950783---4333358997369888999999
Q 000853 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 678 ~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv 754 (1252)
..|++||+.+++||++||+||||||||||+++|+|..+ .+|+|.++|.+... ...+...+|++|+.......++
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 89 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 89 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBH
T ss_pred CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCH
T ss_conf 15558888994898999998999809999999948879---955999999999869989998640245121357744209
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCEEEE
Q ss_conf 999999987249999999899999999999829954222323489888779889999999999950-------9968899
Q 000853 755 EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFM 827 (1252)
Q Consensus 755 ~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ig~~~~~~lSgG~rkrv~ia~~l~~-------~p~il~l 827 (1252)
.+.+.+...- +.+.+.++++++.+++.+..+..+ +.+|||||||++||++|+. +|++++|
T Consensus 90 ~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llll 156 (231)
T d1l7vc_ 90 WHYLTLHQHD--------KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 156 (231)
T ss_dssp HHHHHHHCSC--------TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHHHHCCCH--------HHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 8876410014--------668999999998659876767684-----456998899999999998517133899889997
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCCC
Q ss_conf 399999999999999999999987798999994589889999720014664395899966998
Q 000853 828 DEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 828 DEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~~l~~gg~~~~~g~~~ 890 (1252)
||||+|||+.++..+++.++++++.|.|||+++|++. ++...+|++++|. +|++++.|++.
T Consensus 157 DEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~-~G~iv~~G~~~ 217 (231)
T d1l7vc_ 157 DEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGRRE 217 (231)
T ss_dssp SSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEE-TTEECCCSBHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECCHH
T ss_conf 1877778989999999999999867999999967799-9999799999997-99899988999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.2e-44 Score=288.78 Aligned_cols=193 Identities=21% Similarity=0.327 Sum_probs=152.2
Q ss_pred CCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 33222360578748739999458998867899888349789707999999995078343333589973698889999999
Q 000853 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 755 (1252)
Q Consensus 676 ~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~ 755 (1252)
.+++|+|+|+.+++||++||+||||||||||+++|+|... +.+|.|.++|. ++|++|+..+++ .|++
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCS-EEHH
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCE----------EEEEECCCCCCC-CEEE
T ss_conf 9767737599985999999998999829999999957974--78828999999----------999816430267-6032
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHH---HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9999998724999999989999999---9999829954222323489888779889999999999950996889939999
Q 000853 756 ESVIFSAWLRLSPEIDLKTKAEFVN---EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 832 (1252)
Q Consensus 756 e~l~~~a~lr~~~~~~~~~~~~~v~---~~l~~l~l~~~~~~~ig~~~~~~lSgG~rkrv~ia~~l~~~p~il~lDEpts 832 (1252)
|++.|.. ........+..+ .......+.+..++.++.. ...||||||||++|||+|+.+|+|++|||||+
T Consensus 115 eni~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLDEPts 187 (281)
T d1r0wa_ 115 ENIIFGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLDSPFG 187 (281)
T ss_dssp HHHTTTS------CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred CCCCCCC------CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCC
T ss_conf 1420333------4560579999999776999984612332355554-23779999999999999986963513338554
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCCCC
Q ss_conf 99999999999999999877989999945898899997200146643958999669987
Q 000853 833 GLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 833 gLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~~l~~gg~~~~~g~~~~ 891 (1252)
+||+.+...+++.+......++|+|+++|++ +....+|++++|. +|++++.|++.+
T Consensus 188 ~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~-~G~i~~~Gt~~e 243 (281)
T d1r0wa_ 188 YLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILH-QGSSYFYGTFSE 243 (281)
T ss_dssp SSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEE-TTEEEEEECHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCEEEEEE-CCEEEEECCHHH
T ss_conf 4898999999999998862899999992528--9998599999998-999999878999
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.4e-43 Score=281.51 Aligned_cols=191 Identities=19% Similarity=0.246 Sum_probs=158.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC----------------CCCEEEEECCCCCCCCCCCH
Q ss_conf 99985799999689998981998999832689999891278765----------------54238876654456888988
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV----------------PQKTSAYISQYDLHIAEMTV 64 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~----------------~~~~~~yv~Q~d~l~~~lTV 64 (1252)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.++||.|+..+++.+||
T Consensus 30 i~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv 106 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 106 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHC
T ss_conf 99999899982999999997476678---997799999933677520000235176799974544899833231411010
Q ss_pred HHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCC-CCCCCCCCCC
Q ss_conf 999999976-12899887504799999985088999724678888763110012129999999298443-5542258865
Q 000853 65 RETIDFSAR-CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDIC-ADTIVGDPMR 142 (1252)
Q Consensus 65 rEnL~f~a~-l~~~~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~-~~T~VG~~~~ 142 (1252)
+||+.++.. .++. . ..+ .+..++++++.++|.+. .+...++
T Consensus 107 ~env~~~~~~~~~~--~---~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~p~~--- 149 (258)
T d1b0ua_ 107 LENVMEAPIQVLGL--S---KHD-----------------------------ARERALKYLAKVGIDERAQGKYPVH--- 149 (258)
T ss_dssp HHHHHHHHHHTTCC--C---HHH-----------------------------HHHHHHHHHHHTTCCHHHHTSCGGG---
T ss_pred CHHHHHHHHHHCCC--C---HHH-----------------------------HHHHHHHHHHHCCCCHHHHCCCCCC---
T ss_conf 21365657876299--9---899-----------------------------9999999999829952443068220---
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCC
Q ss_conf 44672322134899988329817366269866385989999999999857269889999348982688300318997298
Q 000853 143 RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEG 222 (1252)
Q Consensus 143 ~gLSGGQKrRLsIA~aL~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G 222 (1252)
||||||||++||||++.+|++++|||||+|||+.++.+|++.++.+.. .|.|+++ ++|...++..++|||++|.+|
T Consensus 150 --LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~til~-vtHdl~~~~~~adri~vm~~G 225 (258)
T d1b0ua_ 150 --LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVV-VTHEMGFARHVSSHVIFLHQG 225 (258)
T ss_dssp --SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEE-ECSCHHHHHHHCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCCCEEE-EECCHHHHHHHCCEEEEEECC
T ss_conf --567788898999998439987885245556887888899876554103-6883389-948999999869999999799
Q ss_pred CEEEECCCCHHHH
Q ss_conf 0887578103899
Q 000853 223 KIVYHGPRSYICK 235 (1252)
Q Consensus 223 ~vv~~G~~~~~~~ 235 (1252)
++++.|++.++..
T Consensus 226 ~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 226 KIEEEGDPEQVFG 238 (258)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999849999983
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.4e-43 Score=280.83 Aligned_cols=183 Identities=22% Similarity=0.327 Sum_probs=143.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 99985799999689998981998999832689999891278765542388766544568889889999999761289988
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~~~~~yv~Q~d~l~~~lTVrEnL~f~a~l~~~~~~ 80 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++| .++||+|+..+++ .||+|||.|+...
T Consensus 64 ~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~eni~~~~~~------ 123 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMP-GTIKENIIFGVSY------ 123 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCS-EEHHHHHTTTSCC------
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECC----------EEEEEECCCCCCC-CEEECCCCCCCCC------
T ss_conf 99999899982999999995797478---82899999----------9999816430267-6032142033345------
Q ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 75047999999850889997246788887631100121299999992984435542258865446723221348999883
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~gLSGGQKrRLsIA~aL~ 160 (1252)
+ ...+..++..+.+. .....+++..++.+|+ .+..||||||||++|||||+
T Consensus 124 -~-------------------~~~~~~~~~~~~~~--------~~i~~l~~~~~~~~~~-~~~~LSgGqkQRv~lARaL~ 174 (281)
T d1r0wa_ 124 -D-------------------EYRYKSVVKACQLQ--------QDITKFAEQDNTVLGE-GGVTLSGGQRARISLARAVY 174 (281)
T ss_dssp -C-------------------HHHHHHHHHHTTCH--------HHHTTSTTGGGCEECT-TCTTSCHHHHHHHHHHHHHH
T ss_pred -C-------------------CHHHHHHHHHHHHH--------HHHHHCHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHH
T ss_conf -6-------------------05799999997769--------9998461233235555-42377999999999999998
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 298173662698663859899999999998572698899993489826883003189972980887578103899
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 161 ~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~~~~~~~ 235 (1252)
.+|+|++||||||+||+.++..+++.+.... ..++|+++..|+ .+..+.+|+|++|++|+++++|++.++..
T Consensus 175 ~~p~illLDEPts~LD~~~~~~i~~~~~~~~-~~~~tvi~itH~--~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 175 KDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRILVTSK--MEHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp SCCSEEEEESCCCSSCHHHHHHHHHHCCCCC-TTTSEEEEECSC--HHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCHHHCCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECH--HHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 6963513338554489899999999999886-289999999252--89998599999998999999878999960
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=7.3e-41 Score=267.08 Aligned_cols=196 Identities=21% Similarity=0.295 Sum_probs=158.7
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 79999599999558520112555333322236057874873999945899886789988834978970799999999507
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++.+|+++.++ +.+|+|+|+.+++||++||+||||||||||+++|+|... +.+|+|.+||.+.
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEEEC--------------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEH
T ss_conf 599998999939--------------928842088985998999999999719999999966205--6778899998962
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 83433335899736988899999999999998724999999989999999999982995422232348988877988999
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ig~~~~~~lSgG~rk 810 (1252)
. ..+..++|++|+..+...+|++|++.+.+.++... ... +.+.+.++.+++.+... . ...+||||||
T Consensus 66 ~--~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~-~-----~~~LSgG~~q 132 (200)
T d1sgwa_ 66 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNK----NEIMDALESVEVLDLKK-K-----LGELSQGTIR 132 (200)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCH----HHHHHHHHHTTCCCTTS-B-----GGGSCHHHHH
T ss_pred H--HHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC-CCH----HHHHHHHHHCCCCCCCC-C-----CCCCCCCHHH
T ss_conf 6--73670899950135788828999999999754886-379----99999998748856301-2-----6868971888
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEEC
Q ss_conf 999999995099688993999999999999999999999877989999945898899997200146643
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 811 rv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~~l~~ 879 (1252)
|++||++|+.+|++++|||||+|||+.++..+++.++++.+.+.++++++|+. . ..||.+..|.+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~-l---~~~D~~~~l~~ 197 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE-L---SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC-C---TTSSEEEEGGG
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH-H---HHCCHHHHEEE
T ss_conf 89999988649989998686201699999999999999986799999999162-5---44161234010
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.8e-38 Score=249.58 Aligned_cols=183 Identities=22% Similarity=0.332 Sum_probs=151.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 9998579999968999898199899983268999989127876554---2388766544568889889999999761289
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ---KTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~---~~~~yv~Q~d~l~~~lTVrEnL~f~a~l~~~ 77 (1252)
+++|+||||||||||+++|+|..+ + +|+|.++|.++.....+ ...+|.+|........++.+++.++..-+
T Consensus 27 i~~iiG~nGaGKSTLl~~l~Gl~~-~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-- 100 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAGMTS-G---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK-- 100 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHTSCC-C---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCT--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC-C---CEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCHH--
T ss_conf 999998999809999999948879-9---5599999999986998999864024512135774420988764100146--
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 98875047999999850889997246788887631100121299999992984435542258865446723221348999
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~gLSGGQKrRLsIA~ 157 (1252)
. .+..++++++.++|.+..+..+++ ||||||||++||+
T Consensus 101 -----~--------------------------------~~~~~~~~~~~~~l~~~~~~~~~~-----LSgG~~Qrv~iA~ 138 (231)
T d1l7vc_ 101 -----T--------------------------------RTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAA 138 (231)
T ss_dssp -----T--------------------------------CHHHHHHHHHHTTCTTTTTSBGGG-----CCHHHHHHHHHHH
T ss_pred -----H--------------------------------HHHHHHHHHHHCCCHHHHCCCHHH-----CCHHHHHHHHHHH
T ss_conf -----6--------------------------------899999999865987676768445-----6998899999999
Q ss_pred HHHC-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCC
Q ss_conf 8832-------981736626986638598999999999985726988999934898268830031899729808875781
Q 000853 158 LIVG-------PTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPR 230 (1252)
Q Consensus 158 aL~~-------~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~~ 230 (1252)
|++. +|+|++|||||+|||+.++..+++.++.+.. .|.|++++ +|...++.+.+|++++|++|++++.|++
T Consensus 139 al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~v-tHdl~~~~~~~dri~vl~~G~iv~~G~~ 216 (231)
T d1l7vc_ 139 VVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVMS-SHDLNHTLRHAHRAWLLKGGKMLASGRR 216 (231)
T ss_dssp HHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEEC-CCCHHHHHHHCSBCCBEETTEECCCSBH
T ss_pred HHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEE-ECCHHHHHHHCCEEEEEECCEEEEECCH
T ss_conf 998517133899889997187777898999999999999986-79999999-6779999997999999979989998899
Q ss_pred CHH
Q ss_conf 038
Q 000853 231 SYI 233 (1252)
Q Consensus 231 ~~~ 233 (1252)
.++
T Consensus 217 ~ev 219 (231)
T d1l7vc_ 217 EEV 219 (231)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 998
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=9e-36 Score=235.50 Aligned_cols=169 Identities=17% Similarity=0.233 Sum_probs=135.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 99985799999689998981998999832689999891278765542388766544568889889999999761289988
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~~~~~yv~Q~d~l~~~lTVrEnL~f~a~l~~~~~~ 80 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+. +..++|++|+..+...+|+.|++.+.+.+.+....
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~ 103 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN 103 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEHHHH--CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 99999999971999999996620567---78899998962673--67089995013578882899999999975488637
Q ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 75047999999850889997246788887631100121299999992984435542258865446723221348999883
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~gLSGGQKrRLsIA~aL~ 160 (1252)
.. .+.+.++.+++.+. +.++++ ||||||||++||+|++
T Consensus 104 ---~~---------------------------------~~~~~l~~~~~~~~-~~~~~~-----LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 104 ---KN---------------------------------EIMDALESVEVLDL-KKKLGE-----LSQGTIRRVQLASTLL 141 (200)
T ss_dssp ---HH---------------------------------HHHHHHHHTTCCCT-TSBGGG-----SCHHHHHHHHHHHHTT
T ss_pred ---HH---------------------------------HHHHHHHHCCCCCC-CCCCCC-----CCCCHHHHHHHHHHHH
T ss_conf ---99---------------------------------99999987488563-012686-----8971888899999886
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECC
Q ss_conf 2981736626986638598999999999985726988999934898268830031899729
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAE 221 (1252)
Q Consensus 161 ~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~ 221 (1252)
.+|++++|||||+|||+.++..+++.++++.+.. .+++++.||.. ..+|.+.+|.+
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~-~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK-GIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHH-SEEEEEESSCC----TTSSEEEEGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEEECHH----HHCCHHHHEEE
T ss_conf 4998999868620169999999999999998679-99999991625----44161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.50 E-value=4.9e-15 Score=106.95 Aligned_cols=82 Identities=13% Similarity=0.066 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCCEEEEECCC
Q ss_conf 7798899999999999509968899399999999999999999999987-798999994589889999720014664395
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 803 ~lSgG~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~h~~~~~~~~~~d~i~~l~~gg 881 (1252)
..++|++++..+++++..+|+++++|||+... ......+..+.++.+ .+.+++.++|+.. ....+|++..+. +|
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~ 155 (178)
T d1ye8a1 81 EELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPNVNVVATIPIRD--VHPLVKEIRRLP-GA 155 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTTSEEEEECCSSC--CSHHHHHHHTCT-TC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC--HHHHHHHHHHHHHHCCCCCEEEEEECCHH--HHHHHCEEEEEE-CC
T ss_conf 65320137899999974099742302777310--04579999999875057978999974477--898636599871-99
Q ss_pred EEEEECCC
Q ss_conf 89996699
Q 000853 882 RIIYSGPL 889 (1252)
Q Consensus 882 ~~~~~g~~ 889 (1252)
+++.-++.
T Consensus 156 ~i~~v~~~ 163 (178)
T d1ye8a1 156 VLIELTPE 163 (178)
T ss_dssp EEEECCTT
T ss_pred EEEEECCC
T ss_conf 99998996
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.46 E-value=1.4e-14 Score=104.06 Aligned_cols=158 Identities=12% Similarity=0.099 Sum_probs=97.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCC--CCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 998579999968999898199899983268999989127876554238876654--456888988999999976128998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQY--DLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~~~~~yv~Q~--d~l~~~lTVrEnL~f~a~l~~~~~ 79 (1252)
.+|.||||||||||++.|+|.+.+. .|.+..+|.+......+.....+... .......+..+...+ .
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 71 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLV--------G 71 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEE--------T
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCC---CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
T ss_conf 9999899938999999998148888---6469987713288887653112336677788754113455443--------0
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 87504799999985088999724678888763110012129999999298443554225886544672322134899988
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~gLSGGQKrRLsIA~aL 159 (1252)
++ +.++ ....+++|+++|.++++++
T Consensus 72 ~~--------------------------------------------------~~~~-----~~~~~~~~~~~~~~l~~~~ 96 (178)
T d1ye8a1 72 SY--------------------------------------------------GVNV-----QYFEELAIPILERAYREAK 96 (178)
T ss_dssp TE--------------------------------------------------EECH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HH--------------------------------------------------HCCC-----CHHHHHHHHHHHHHHHHHH
T ss_conf 23--------------------------------------------------0376-----2566532013789999997
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECC
Q ss_conf 3298173662698663859899999999998572698899993489826883003189972980887578
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229 (1252)
Q Consensus 160 ~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~ 229 (1252)
..+|+++++|||....+ .....++.+.......+.+++.+.|+. +.....|++..+.+|+++.-++
T Consensus 97 ~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 97 KDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEECCSS--CCSHHHHHHHTCTTCEEEECCT
T ss_pred HCCCCCEEECCCCCCCH--HHHHHHHHHHHHHCCCCCEEEEEECCH--HHHHHHCEEEEEECCEEEEECC
T ss_conf 40997423027773100--457999999987505797899997447--7898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.17 E-value=1.2e-09 Score=73.42 Aligned_cols=74 Identities=23% Similarity=0.230 Sum_probs=60.7
Q ss_pred CCCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEE
Q ss_conf 887798899999999999----5099688993999999999999999999999877989999945898899997200146
Q 000853 801 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLIL 876 (1252)
Q Consensus 801 ~~~lSgG~rkrv~ia~~l----~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~~ 876 (1252)
...+|+|||+...++..+ ..+++++++|||-++||+.....+.+.|+..++ +.-+|+|+|.|. +++.+|++..
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCCEEE
T ss_conf 1102577766777776655654226744554320335797899999999998554-887999989889--9973242899
Q ss_pred E
Q ss_conf 6
Q 000853 877 M 877 (1252)
Q Consensus 877 l 877 (1252)
+
T Consensus 294 v 294 (308)
T d1e69a_ 294 V 294 (308)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.06 E-value=3.3e-09 Score=70.77 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=60.6
Q ss_pred CCCCCCCCCHHHHHHH----HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEE
Q ss_conf 4467232213489998----832981736626986638598999999999985726988999934898268830031899
Q 000853 143 RGVSGGQKKRLTTGEL----IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVML 218 (1252)
Q Consensus 143 ~gLSGGQKrRLsIA~a----L~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~v 218 (1252)
..+|+|||+.+.++.. ....++++++|||-++|++.....+.+.|+..+. +.-++++ +|++++++.+|+++.
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~Qviit--THsp~~~~~~d~~~~ 293 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVI--THNKIVMEAADLLHG 293 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEE--CCCTTGGGGCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--CCEEEEE--ECCHHHHHHCCCEEE
T ss_conf 102577766777776655654226744554320335797899999999998554--8879999--898899973242899
Q ss_pred --ECCCC
Q ss_conf --72980
Q 000853 219 --MAEGK 223 (1252)
Q Consensus 219 --L~~G~ 223 (1252)
+.+|.
T Consensus 294 v~~~~g~ 300 (308)
T d1e69a_ 294 VTMVNGV 300 (308)
T ss_dssp EEESSSC
T ss_pred EEEECCE
T ss_conf 9996999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.96 E-value=1.2e-09 Score=73.45 Aligned_cols=74 Identities=15% Similarity=0.199 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEE
Q ss_conf 87798899999999999----50996889939999999999999999999998779899999458988999972001466
Q 000853 802 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILM 877 (1252)
Q Consensus 802 ~~lSgG~rkrv~ia~~l----~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~~l 877 (1252)
..+|||||.++++|.-+ ..+++++++|||+++||+.....+.+.|++++..+.-+|+++|+| ++.+..|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878--999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=1.7e-08 Score=66.31 Aligned_cols=74 Identities=19% Similarity=0.320 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEE
Q ss_conf 44672322134899988----32981736626986638598999999999985726988999934898268830031899
Q 000853 143 RGVSGGQKKRLTTGELI----VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVML 218 (1252)
Q Consensus 143 ~gLSGGQKrRLsIA~aL----~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~v 218 (1252)
..+|||||.++++|..+ +.++++++||||+++||+..+..+.+.|+..+. .+.-+|++ +|.+++.+.+|+++.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~i--TH~~~~~~~ad~~~~ 407 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVI--SLKNTMFEKSDALVG 407 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEE--CSCHHHHTTCSEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEE--ECCHHHHHHCCCEEE
T ss_conf 332230479999999999954799977999688777899999999999999728-99889999--587899973661799
Q ss_pred E
Q ss_conf 7
Q 000853 219 M 219 (1252)
Q Consensus 219 L 219 (1252)
.
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.79 E-value=0.00071 Score=37.73 Aligned_cols=61 Identities=10% Similarity=0.194 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf 89999999999950996889939999999999999999-9999987798999994589889999
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-AVKNVVETGRTVVCTIHQPSIDIFE 869 (1252)
Q Consensus 807 G~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~-~l~~~~~~g~tvi~~~h~~~~~~~~ 869 (1252)
.|-++++-.....++..++++||.-.|=|+.....+.. .++.+.+.+..+++++|.. ++..
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~ 161 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTA 161 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHT
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH--HHHH
T ss_conf 8678898775028977278554545686233200258888888862376137865202--3332
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.76 E-value=2.2e-05 Score=47.09 Aligned_cols=156 Identities=17% Similarity=0.110 Sum_probs=73.6
Q ss_pred CCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC--CCCEEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 223605787487399994589988678998883497--897079999999950783433335899736988899999999
Q 000853 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK--TGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 756 (1252)
Q Consensus 679 ~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~--~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 756 (1252)
-|+.+.+-++||+++.|.|++|+||||++.-++-.. ..+ . .+.|+.- .+++.+
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g----------~---------~v~~~s~------E~~~~~ 78 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG----------K---------KVGLAML------EESVEE 78 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC----------C---------CEEEEES------SSCHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC----------C---------CEEEEEE------CCCHHH
T ss_conf 68887469789808999947999799999999972655336----------6---------3457640------111135
Q ss_pred HHH-HHHHC-CCCCCCCHHHHH-----HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 999-99872-499999998999-----99999999829954222323489888779889999999999950996889939
Q 000853 757 SVI-FSAWL-RLSPEIDLKTKA-----EFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 829 (1252)
Q Consensus 757 ~l~-~~a~l-r~~~~~~~~~~~-----~~v~~~l~~l~l~~~~~~~ig~~~~~~lSgG~rkrv~ia~~l~~~p~il~lDE 829 (1252)
... +.+.. ..+.......+. +..++..+.+.-....... .........+.....-...--.+|+++++|=
T Consensus 79 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~ 155 (277)
T d1cr2a_ 79 TAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLY---DSFAEAETDRLLAKLAYMRSGLGCDVIILDH 155 (277)
T ss_dssp HHHHHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEEE---CCC-CCCHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEE---CCCCCHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 7769999864587101012222214567788898874035214662---1433106899999865432136762599705
Q ss_pred CC-----CCCC--HHHHHHHHHHHHHHHHC-CCEEEEEECC
Q ss_conf 99-----9999--99999999999999877-9899999458
Q 000853 830 PT-----SGLD--ARAAAIVMRAVKNVVET-GRTVVCTIHQ 862 (1252)
Q Consensus 830 pt-----sgLD--~~~~~~i~~~l~~~~~~-g~tvi~~~h~ 862 (1252)
.+ .+-+ ......++..|+++++. +.+|++++|-
T Consensus 156 l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~ 196 (277)
T d1cr2a_ 156 ISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196 (277)
T ss_dssp EEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 42120346544306778999999999765016552031035
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.69 E-value=8.3e-05 Score=43.49 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=22.7
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEECC
Q ss_conf 2981736626986638598999999-9999857269889999348
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVS-FLKHLVHITDATALISLLQ 204 (1252)
Q Consensus 161 ~~p~IllLDEPTSgLDs~s~~~I~~-~L~~l~~~~~~t~i~~i~q 204 (1252)
+...++++||..+|=|+.....+.. .++.+.. .+...++++|+
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~ 156 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHY 156 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCC
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHH-CCCCEEEEEEC
T ss_conf 977278554545686233200258888888862-37613786520
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=0.00015 Score=41.94 Aligned_cols=58 Identities=12% Similarity=0.113 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHC-CCEEEEEECCCC
Q ss_conf 89999999999950996889939999999999999999-99999877-989999945898
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-AVKNVVET-GRTVVCTIHQPS 864 (1252)
Q Consensus 807 G~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~-~l~~~~~~-g~tvi~~~h~~~ 864 (1252)
.|-+|++-.....++..++++||+-.|=++.....+.. .++.+... +..+++++|...
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 999999999974546608853222358774566678987645432045442898524687
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=0.00053 Score=38.50 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=10.5
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 399994589988678998883
Q 000853 691 ILTALMGVSGAGKTTLMDVLS 711 (1252)
Q Consensus 691 ~~~~i~G~sGaGKtTLl~~l~ 711 (1252)
..+.|.|||.+||||+|+.++
T Consensus 42 ~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 42 RMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHH
T ss_conf 399995467313689999879
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.48 E-value=0.0016 Score=35.61 Aligned_cols=124 Identities=20% Similarity=0.178 Sum_probs=66.3
Q ss_pred EEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 05787487399994589988678998883497897079999999950783433335899736988899999999999998
Q 000853 683 ITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSA 762 (1252)
Q Consensus 683 vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~a 762 (1252)
+...++.+.-+.|.|+.||||||++++|.+...+..- -|++- +..-+
T Consensus 159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~r--ivtiE------------------d~~El------------- 205 (323)
T d1g6oa_ 159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEER--IISIE------------------DTEEI------------- 205 (323)
T ss_dssp HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCC--EEEEE------------------SSCCC-------------
T ss_pred HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCC--EEECC------------------CHHHH-------------
T ss_conf 9999983788899940356625789998653014562--33113------------------22655-------------
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 72499999998999999999998299542223234898887798899999999999509968899399999999999999
Q 000853 763 WLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 842 (1252)
Q Consensus 763 ~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ig~~~~~~lSgG~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i 842 (1252)
.++.... +..-.. ..+++-.+ .+-.+|=.+|+.+++.|--.. .+.
T Consensus 206 --~l~~~~~-------------------~~~~~~----~~~~~~~~----ll~~~lR~~pd~iivgEiR~~---ea~--- 250 (323)
T d1g6oa_ 206 --VFKHHKN-------------------YTQLFF----GGNITSAD----CLKSCLRMRPDRIILGELRSS---EAY--- 250 (323)
T ss_dssp --CCSSCSS-------------------EEEEEC----BTTBCHHH----HHHHHTTSCCSEEEESCCCST---HHH---
T ss_pred --HCCCCCC-------------------CCEECC----CCCHHHHH----HHHHHHCCCCCCCCCCCCCCH---HHH---
T ss_conf --1111245-------------------410014----65424999----999974349985457866746---599---
Q ss_pred HHHHHHHHHCCC-EEEEEECCCCHHHHHHHCCEEEEE
Q ss_conf 999999987798-999994589889999720014664
Q 000853 843 MRAVKNVVETGR-TVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 843 ~~~l~~~~~~g~-tvi~~~h~~~~~~~~~~d~i~~l~ 878 (1252)
..++.+. .|. -++.|+|-.+. ...++|+.-|.
T Consensus 251 -~~l~a~~-tGh~g~~tT~Ha~s~--~~a~~Rl~~l~ 283 (323)
T d1g6oa_ 251 -DFYNVLC-SGHKGTLTTLHAGSS--EEAFIRLANMS 283 (323)
T ss_dssp -HHHHHHH-TTCSCEEEEECCSSH--HHHHHHHHHHH
T ss_pred -HHHHHHH-HCCCCEEEEECCCCH--HHHHHHHHHHC
T ss_conf -9999998-169857998787999--99999999852
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.39 E-value=5.7e-05 Score=44.54 Aligned_cols=34 Identities=21% Similarity=0.527 Sum_probs=26.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 873999945899886789988834978970799999
Q 000853 689 PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR 724 (1252)
Q Consensus 689 ~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~ 724 (1252)
+|..++++|+||.|||||+|.|.+... .-.|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~--~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC--CC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH--HHCCCCC
T ss_conf 698089978898778888773053555--0106842
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=97.28 E-value=0.0017 Score=35.32 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=37.4
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEE
Q ss_conf 999999509968899399999999999999999999987798999994589889999720014
Q 000853 813 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLI 875 (1252)
Q Consensus 813 ~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~ 875 (1252)
.+..+|=.+|+++++.|.. |..++.... +.+..|+.|+.|.|-.+ ....++|++
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~Rl~ 272 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTRLR 272 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHHHH
T ss_pred HHHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCC--HHHHHHHHH
T ss_conf 9999984138889845768---759999999----99724985899833676--676654321
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.26 E-value=9.6e-05 Score=43.11 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998579999968999898199899
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSH 25 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~ 25 (1252)
++++|+||.|||||+|.|.|....
T Consensus 98 ~~~~G~SGVGKSTLiN~L~~~~~~ 121 (225)
T d1u0la2 98 STMAGLSGVGKSSLLNAINPGLKL 121 (225)
T ss_dssp EEEECSTTSSHHHHHHHHSTTCCC
T ss_pred EEEECCCCCCHHHHHHHHCCHHHH
T ss_conf 899788987788887730535550
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=6.8e-05 Score=44.05 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=18.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9998579999968999898199899
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSH 25 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~ 25 (1252)
++.|.|++|||||||++.|+.++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.0057 Score=32.12 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=71.5
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 74873999945899886789988834978970799999999507834333358997369888999999999999987249
Q 000853 687 FRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRL 766 (1252)
Q Consensus 687 i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~ 766 (1252)
+.||+++.|.|++|+|||||+--++.....+ .=.+..... -...+-|+..++.. -.+.+-+ .+. ..
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g----~~~~~~~~~----~~~~vl~~~~E~~~---~~~~~Rl--~~~-~~ 91 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGG----PDLLEVGEL----PTGPVIYLPAEDPP---TAIHHRL--HAL-GA 91 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTC----CCTTCCCCC----CCCCEEEEESSSCH---HHHHHHH--HHH-HT
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCC----CCCCCCCCC----CCCCEEEEECCCHH---HHHHHHH--HHH-HH
T ss_conf 5589589999289998999999999999769----972111235----78736898512349---9999999--998-62
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC-----CCCHHHHHH
Q ss_conf 999999899999999999829954222323489888779889999999999950996889939999-----999999999
Q 000853 767 SPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS-----GLDARAAAI 841 (1252)
Q Consensus 767 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ig~~~~~~lSgG~rkrv~ia~~l~~~p~il~lDEpts-----gLD~~~~~~ 841 (1252)
...... .......+.+....+.. .... -+. .+.--.....+|+++++|--+. --|......
T Consensus 92 --~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~--~~~-~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~ 157 (274)
T d1nlfa_ 92 --HLSAEE----RQAVADGLLIQPLIGSL-----PNIM--APE-WFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 157 (274)
T ss_dssp --TSCHHH----HHHHHHHEEECCCTTSC-----CCTT--SHH-HHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred --CCCHHH----HHCCCCCCEECCCCCCC-----CHHH--HHH-HHHHHHHHCCCCCEEECCCHHHHCCCCCCCHHHHHH
T ss_conf --368666----53123332321456742-----0357--899-999988752676589628135422665232256899
Q ss_pred HHHHHHHHHHC-CCEEEEEECCC
Q ss_conf 99999999877-98999994589
Q 000853 842 VMRAVKNVVET-GRTVVCTIHQP 863 (1252)
Q Consensus 842 i~~~l~~~~~~-g~tvi~~~h~~ 863 (1252)
+++.|+.+++. +.+|+++.|..
T Consensus 158 ~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 158 VIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 99887777644797540131005
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.04 E-value=4.1e-05 Score=45.39 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=26.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 873999945899886789988834978970799999
Q 000853 689 PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR 724 (1252)
Q Consensus 689 ~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~ 724 (1252)
.|..+.++|+||.|||||+|.|.+... ...|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH--HHHCCCC
T ss_conf 356499987787348789875151767--6403555
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.91 E-value=0.00029 Score=40.11 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=13.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 739999458998867899888349
Q 000853 690 GILTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 690 G~~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
|.++.|+||||||||||.+.|..+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 749999899999999999999845
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.88 E-value=0.00039 Score=39.34 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=23.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 873999945899886789988834978
Q 000853 689 PGILTALMGVSGAGKTTLMDVLSGRKT 715 (1252)
Q Consensus 689 ~G~~~~i~G~sGaGKtTLl~~l~g~~~ 715 (1252)
.|+++.|.|++||||||+.+.|+.+..
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.0084 Score=31.05 Aligned_cols=49 Identities=10% Similarity=0.085 Sum_probs=32.5
Q ss_pred HHHHCCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 988329817366269866-----3859899999999998572698899993489
Q 000853 157 ELIVGPTRALFMDEISNG-----LDSSTTFQIVSFLKHLVHITDATALISLLQP 205 (1252)
Q Consensus 157 ~aL~~~p~IllLDEPTSg-----LDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~ 205 (1252)
.....+++++++|.-+.- -|......+++.|+.++...+.++++..|..
T Consensus 127 ~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 127 KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 875267658962813542266523225689999887777644797540131005
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.81 E-value=0.00011 Score=42.73 Aligned_cols=22 Identities=45% Similarity=0.797 Sum_probs=9.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
++++|+||.|||||+|.|.|..
T Consensus 100 ~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 100 TVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp EEEEESHHHHHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHCCHH
T ss_conf 9998778734878987515176
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.00039 Score=39.37 Aligned_cols=22 Identities=45% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
+++|+|++|||||||++.|...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.72 E-value=0.00035 Score=39.62 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=20.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
+++|+||.|||||||++.|.....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.72 E-value=0.00038 Score=39.43 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.++|+|++|+|||||+|.|+|+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.69 E-value=0.00021 Score=40.96 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=12.4
Q ss_pred EEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 98579999968999898199899
Q 000853 3 LLLGHPGCGKTTLLSALSGKLSH 25 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G~~~~ 25 (1252)
.|+|++|||||||+..|..++..
T Consensus 5 ~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 5 QVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99809999899999999999986
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.68 E-value=4.6e-05 Score=45.09 Aligned_cols=32 Identities=31% Similarity=0.291 Sum_probs=24.2
Q ss_pred CCCEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 236057874873999945899886789988834
Q 000853 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 680 L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g 712 (1252)
.++.++.+.+| ++.|+|+|||||||++++|.-
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 70279974998-089988999987999999999
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=0.00064 Score=38.02 Aligned_cols=25 Identities=36% Similarity=0.512 Sum_probs=17.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8739999458998867899888349
Q 000853 689 PGILTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 689 ~G~~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.|.++.|+||||+|||||.+.|..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9809999999999999999999863
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.64 E-value=0.00052 Score=38.58 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=26.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC-CCEEEEEEEECCE
Q ss_conf 999945899886789988834978-9707999999995
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRKT-GGIIEGDIRIGGY 728 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~~-~~~~~G~i~~~g~ 728 (1252)
+++|+|++|||||||++.|..+.. .|..-|.|..+++
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 99998099998999999999999867983799983167
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.64 E-value=0.00059 Score=38.23 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+|+|++|+|||||++.|+|+-.
T Consensus 26 I~lvG~~n~GKSTLin~L~g~~~ 48 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLINRKN 48 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHCCCCC
T ss_conf 99989999879999998529874
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.60 E-value=0.00032 Score=39.86 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=21.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9998579999968999898199899
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSH 25 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~ 25 (1252)
+.+|+||||||||||.+.|..+.+.
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9999899999999999999845899
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.00075 Score=37.56 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=22.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 487399994589988678998883497
Q 000853 688 RPGILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 688 ~~G~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
+.+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.54 E-value=0.00062 Score=38.07 Aligned_cols=34 Identities=35% Similarity=0.568 Sum_probs=25.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 999857999996899989819989998326899998912
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYR 39 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~ 39 (1252)
+.+|.||+||||||+.+.|+.++.. -.+.+++..
T Consensus 6 iI~l~G~~GsGKSTia~~La~~lg~-----~~~~~~~d~ 39 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANLPGV-----PKVHFHSDD 39 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSSS-----CEEEECTTH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-----CEEEECHHH
T ss_conf 9999889999889999999999599-----979906899
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.50 E-value=0.00089 Score=37.11 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=23.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 487399994589988678998883497
Q 000853 688 RPGILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 688 ~~G~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
+.|-++.|.|++||||||+-+.|+.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.48 E-value=0.014 Score=29.68 Aligned_cols=152 Identities=17% Similarity=0.138 Sum_probs=74.4
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 5787487399994589988678998883497-897079999999950783433335899736988899999999999998
Q 000853 684 TGTFRPGILTALMGVSGAGKTTLMDVLSGRK-TGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSA 762 (1252)
Q Consensus 684 s~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~-~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~a 762 (1252)
.|-+++|+++.|.|++|+|||++..-++... ..+. .+.|+.- ..++.+....+.
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~-------------------~~~~is~------e~~~~~~~~~~~ 74 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKE-------------------RAILFAY------EESRAQLLRNAY 74 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC-------------------CEEEEES------SSCHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------------CCCEEEC------CCCHHHHHHHHH
T ss_conf 689869849999918999999999999999987232-------------------4411212------679999999999
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHCCCEEEEECCCC---CCCHHH
Q ss_conf 7249999999899999999999829954222323489888779889999999999-950996889939999---999999
Q 000853 763 WLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVE-LVANPSIIFMDEPTS---GLDARA 838 (1252)
Q Consensus 763 ~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ig~~~~~~lSgG~rkrv~ia~~-l~~~p~il~lDEpts---gLD~~~ 838 (1252)
.... +..+ . ...+.....+.. .......+. .-.+... --.+|++++.|--+. +.+...
T Consensus 75 ~~~~----~~~~-------~-~~~~~~~~~~~~-----~~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~ 136 (242)
T d1tf7a2 75 SWGM----DFEE-------M-ERQNLLKIVCAY-----PESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNNA 136 (242)
T ss_dssp TTSC----CHHH-------H-HHTTSEEECCCC-----GGGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHHH
T ss_pred HCCC----CHHH-------H-HHCCCEEEEEEE-----CCHHHHHHH-HHHHHHHHHHCCCCEEEEECCHHHHCCCCHHH
T ss_conf 8299----8699-------8-545861799730-----001017999-99999999840885332204314304899999
Q ss_pred HHHHHHHHHHHH-HCCCEEEEEECCCC---------HHHHHHHCCEEEEE
Q ss_conf 999999999998-77989999945898---------89999720014664
Q 000853 839 AAIVMRAVKNVV-ETGRTVVCTIHQPS---------IDIFEAFDDLILMK 878 (1252)
Q Consensus 839 ~~~i~~~l~~~~-~~g~tvi~~~h~~~---------~~~~~~~d~i~~l~ 878 (1252)
.......|.+++ +.+.+++++.|... ..+....|.++.+.
T Consensus 137 ~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 137 FRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 99999999999998698399998567512554457764046421699999
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.00073 Score=37.65 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
+.+|+|++||||||+.+.|+.++.
T Consensus 8 iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 8 IYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899989999898999999999869
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.39 E-value=0.018 Score=29.02 Aligned_cols=163 Identities=16% Similarity=0.059 Sum_probs=75.7
Q ss_pred CCCCE-EEEEECCEEEEEECCCCCCHHHHHHHHHCC-CCCCEEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 22360-578748739999458998867899888349-7897079999999950783433335899736988899999999
Q 000853 679 LLSDI-TGTFRPGILTALMGVSGAGKTTLMDVLSGR-KTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 756 (1252)
Q Consensus 679 ~L~~v-s~~i~~G~~~~i~G~sGaGKtTLl~~l~g~-~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 756 (1252)
-|+++ .|-+++|+++.|.|++|+|||+|..-++.. ...+ .. .+.|+.-+ .+..+
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~--~~----------------~~~~~s~e------~~~~~ 69 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF--DE----------------PGVFVTFE------ETPQD 69 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH--CC----------------CEEEEESS------SCHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC--CC----------------CCCCCCCC------CCHHH
T ss_conf 79885568996983999994799999999999999999856--88----------------74201266------79999
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHH--HCCCEEEEECCCCC
Q ss_conf 999998724999999989999999999982995422232348988877988999-999999995--09968899399999
Q 000853 757 SVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK-RLTIAVELV--ANPSIIFMDEPTSG 833 (1252)
Q Consensus 757 ~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ig~~~~~~lSgG~rk-rv~ia~~l~--~~p~il~lDEptsg 833 (1252)
.......... .. ....+............... ....+..... .+.-....+ .+|+++++|--+.-
T Consensus 70 ~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l 137 (242)
T d1tf7a1 70 IIKNARSFGW----DL-------AKLVDEGKLFILDASPDPEG-QEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSV 137 (242)
T ss_dssp HHHHHGGGTC----CH-------HHHHHTTSEEEEECCCCSSC-CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTT
T ss_pred HHHHHHHCCC----CH-------HHHHHHCCHHHHHHCCCHHH-HHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999998499----84-------89887143024442103354-444302458999999999988631222002078899
Q ss_pred C----CHH-HHHHHHHHHHHHHHCCCEEEEEECCCCH--------HHHHHHCCEEEE
Q ss_conf 9----999-9999999999998779899999458988--------999972001466
Q 000853 834 L----DAR-AAAIVMRAVKNVVETGRTVVCTIHQPSI--------DIFEAFDDLILM 877 (1252)
Q Consensus 834 L----D~~-~~~~i~~~l~~~~~~g~tvi~~~h~~~~--------~~~~~~d~i~~l 877 (1252)
. +.. ....+...++..++.+.|++++.|.... ..-..+|.++.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~ 194 (242)
T d1tf7a1 138 FQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVIL 194 (242)
T ss_dssp STTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEE
T ss_conf 876057267899999999999863971688421025542224676233536299998
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.36 E-value=0.0011 Score=36.59 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399994589988678998883497
Q 000853 691 ILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 691 ~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
=.+||+|.+|+|||||++.|.|..
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 889999999999999999997787
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.35 E-value=0.00051 Score=38.62 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999945899886789988834978
Q 000853 691 ILTALMGVSGAGKTTLMDVLSGRKT 715 (1252)
Q Consensus 691 ~~~~i~G~sGaGKtTLl~~l~g~~~ 715 (1252)
..+.+.||+|+|||||.+.|++...
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999889799889999999999865
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.35 E-value=0.0013 Score=36.09 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=16.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 87399994589988678998883497
Q 000853 689 PGILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 689 ~G~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
+|-.+.|+|++||||||+.+.|+.+.
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98889998289998899999999985
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.34 E-value=0.0012 Score=36.23 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
+++|.|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918998399999999998
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.33 E-value=0.001 Score=36.69 Aligned_cols=22 Identities=55% Similarity=0.723 Sum_probs=13.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+|.||+||||||+.+.|+-++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9898999999899999999997
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.32 E-value=0.0006 Score=38.17 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=17.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399994589988678998883497
Q 000853 691 ILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 691 ~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.++.|.|++||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 089998999999899999999980
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=5.4e-05 Score=44.63 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=19.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985799999689998981998
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
+|+|+|||||||||+|.+|.--+
T Consensus 26 ~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 08998899998799999999996
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.29 E-value=0.001 Score=36.77 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=13.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+++|++|+|||||+|.|.|..
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999988999999996898
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.29 E-value=0.0011 Score=36.53 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.++|+|.+|+|||||+|.|.|+.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.28 E-value=0.00085 Score=37.22 Aligned_cols=20 Identities=40% Similarity=0.710 Sum_probs=12.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99945899886789988834
Q 000853 693 TALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~g 712 (1252)
+||+|++++|||||+|.|+|
T Consensus 4 VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEE
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999879999999968
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.28 E-value=0.001 Score=36.75 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
|.+|+||||+|||||.+.|.-..+
T Consensus 4 livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999999999999999999986398
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.28 E-value=0.00087 Score=37.16 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=15.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.++|.|++|+|||||.+.|+.+.
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999998999999999984
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.27 E-value=0.0012 Score=36.23 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
++||.|++|||||||.+.|...
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9997898878999999999998
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.26 E-value=0.0012 Score=36.24 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.+||+|++|+|||||+|.|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 79998999997899999995888
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.23 E-value=0.001 Score=36.74 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+|+|++|+|||||++.|.|.
T Consensus 6 V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 6 IIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998899999999679
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.23 E-value=0.00095 Score=36.94 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=11.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
++.|+||+||||||+-+.|+.
T Consensus 8 iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 8 VVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899989999988999999999
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.23 E-value=0.0011 Score=36.52 Aligned_cols=20 Identities=35% Similarity=0.615 Sum_probs=11.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99857999996899989819
Q 000853 2 TLLLGHPGCGKTTLLSALSG 21 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G 21 (1252)
..|.|++||||||+.+.|..
T Consensus 5 Iii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989999999999999999
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.22 E-value=0.0012 Score=36.26 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+|.||+|||||||.+.|+-.+.
T Consensus 10 I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 10 VAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999989999999999849
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.0014 Score=35.91 Aligned_cols=24 Identities=46% Similarity=0.664 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998579999968999898199899
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSH 25 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~ 25 (1252)
..|.||+|+|||||++.++..+..
T Consensus 4 v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 4 VFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999889997199999999999997
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.19 E-value=0.0014 Score=35.90 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+|+|||||||+||++.|+-+.+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.15 E-value=0.0016 Score=35.53 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=11.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.++++|++|+|||||++.|+|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.15 E-value=0.0017 Score=35.36 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+|+|.+|+|||||+|+|.|...
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999978999999958886
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.15 E-value=0.0015 Score=35.70 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.++|+|++|+|||||+|.|.|+.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.15 E-value=0.0013 Score=36.11 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+|+||||+||+||++.|..+.+
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999899999999999997097
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.14 E-value=0.0015 Score=35.64 Aligned_cols=21 Identities=48% Similarity=0.615 Sum_probs=12.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999458998867899888349
Q 000853 693 TALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
+.|+||||+|||||.+.|...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.13 E-value=0.00099 Score=36.82 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+|+|++++|||||+|.|+|..
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999987999999996899
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.11 E-value=0.0019 Score=35.10 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+|+|++|+|||||++.|+|...
T Consensus 3 V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC---
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999989999999967775
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.11 E-value=0.0016 Score=35.55 Aligned_cols=23 Identities=35% Similarity=0.723 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+|.||+||||||+.+.|+-.+.
T Consensus 8 I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 8 ILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp EEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCHHHHHHHHHHHHC
T ss_conf 99982899988999999999858
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.08 E-value=0.0014 Score=35.88 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=17.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399994589988678998883497
Q 000853 691 ILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 691 ~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.++.|+||+||||||+.+.|+...
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999999899999999985
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.07 E-value=0.0018 Score=35.22 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.++|+|++|+|||||+|.|.+..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.05 E-value=0.0013 Score=36.02 Aligned_cols=24 Identities=38% Similarity=0.367 Sum_probs=20.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
+.+|-||+|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.04 E-value=0.0022 Score=34.63 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999945899886789988834
Q 000853 691 ILTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 691 ~~~~i~G~sGaGKtTLl~~l~g 712 (1252)
+++.|.|++||||||+.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.0021 Score=34.74 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=10.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
++||.|++||||||+-+.|+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989997879999999999
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.02 E-value=0.0021 Score=34.86 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.++++|.+|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.01 E-value=0.0024 Score=34.46 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=21.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 73999945899886789988834978
Q 000853 690 GILTALMGVSGAGKTTLMDVLSGRKT 715 (1252)
Q Consensus 690 G~~~~i~G~sGaGKtTLl~~l~g~~~ 715 (1252)
..++.|.|++||||||+.+.|+.+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.01 E-value=0.0022 Score=34.69 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+|+|.+|+|||||+|.|.|+..
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999869999999858984
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.00 E-value=0.0017 Score=35.37 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=16.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
+.+|.|++||||||+.+.|+-++.
T Consensus 3 iI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989999898999999999998
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.00 E-value=0.0025 Score=34.32 Aligned_cols=24 Identities=38% Similarity=0.768 Sum_probs=16.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 739999458998867899888349
Q 000853 690 GILTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 690 G~~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
|=.++++|++++|||||++.|+|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.99 E-value=0.0019 Score=35.08 Aligned_cols=23 Identities=39% Similarity=0.810 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+++|++++|||||++.|+|.-.
T Consensus 4 I~lvG~~nvGKSsLin~l~~~~~ 26 (161)
T d2gj8a1 4 VVIAGRPNAGKSSLLNALAGREA 26 (161)
T ss_dssp EEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999989999999968886
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.98 E-value=0.0019 Score=35.02 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9994589988678998883497
Q 000853 693 TALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
+.++||+|+|||-|.+.|++..
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 7998999988999999999873
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.0022 Score=34.68 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999458998867899888349
Q 000853 693 TALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
++++|.+|+|||||+|.|.|.
T Consensus 8 I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999979999899999999589
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.97 E-value=0.0028 Score=33.99 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+|+|++|+|||||++.|+|...
T Consensus 11 V~iiG~~~~GKSTLin~l~~~~~ 33 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNKER 33 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTSTT
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999999999999977876
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.97 E-value=0.0012 Score=36.41 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=21.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9998579999968999898199899
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSH 25 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~ 25 (1252)
+..|.|++||||||+.+.|+.++..
T Consensus 5 iI~l~G~~GsGKsTva~~L~~~l~~ 29 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9999899999989999999997289
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.95 E-value=0.0018 Score=35.19 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=9.4
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 98579999968999898199
Q 000853 3 LLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G~ 22 (1252)
+|+||+||||||+.+.|+-.
T Consensus 7 ~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 7 MISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp EEEESTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
T ss_conf 99889999989999999998
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.0018 Score=35.21 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=25.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 78748739999458998867899888349
Q 000853 685 GTFRPGILTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 685 ~~i~~G~~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
|-+++|+++.|.|++|+|||||..-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 89859979999958999999999999999
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.95 E-value=0.0018 Score=35.17 Aligned_cols=11 Identities=9% Similarity=-0.028 Sum_probs=3.7
Q ss_pred ECCEEEEEECC
Q ss_conf 48739999458
Q 000853 688 RPGILTALMGV 698 (1252)
Q Consensus 688 ~~G~~~~i~G~ 698 (1252)
+-|..+.++.|
T Consensus 104 p~G~Rv~~v~~ 114 (323)
T d1g6oa_ 104 ANGERVQIVLS 114 (323)
T ss_dssp TTSCEEEEECT
T ss_pred CCCEEEEEECC
T ss_conf 68538998246
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.0018 Score=35.19 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+|+||+||||||..+.|+-.+
T Consensus 4 I~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 4 VFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997999999899999999986
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.94 E-value=0.0026 Score=34.18 Aligned_cols=22 Identities=41% Similarity=0.730 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+++|++++|||||+|.|.|..
T Consensus 8 I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999799998999999995898
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.93 E-value=0.0027 Score=34.12 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
+.+|.||+||||||+.+.|+..+.
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899989999998999999999809
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.0013 Score=36.11 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=21.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8739999458998867899888349
Q 000853 689 PGILTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 689 ~G~~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
..-.+||.|++|||||||++.|...
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~ 77 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGML 77 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8328974389999899999999999
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.93 E-value=0.0016 Score=35.55 Aligned_cols=20 Identities=40% Similarity=0.692 Sum_probs=10.6
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 98579999968999898199
Q 000853 3 LLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G~ 22 (1252)
+|+|++++|||||++.|+|.
T Consensus 5 aivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 5 GLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEECCGGGCHHHHHHHHCSS
T ss_pred EEECCCCCCHHHHHHHHHCC
T ss_conf 99899999899999999689
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.0023 Score=34.57 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998579999968999898199899
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSH 25 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~ 25 (1252)
..|.||+|||||||++.|...+..
T Consensus 57 IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 57 LGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 974389999899999999999975
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.0023 Score=34.57 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=14.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
..+.||+||||||+.+.|+-.+.
T Consensus 5 I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 5 IFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999999999999999969
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.88 E-value=0.0029 Score=33.91 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+|+|++|+|||||++.|+|...
T Consensus 8 I~lvG~~~~GKSSLin~l~~~~~ 30 (178)
T d1wf3a1 8 VAIVGKPNVGKSTLLNNLLGVKV 30 (178)
T ss_dssp EEEECSTTSSHHHHHHHHHTSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999999999999968885
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.87 E-value=0.0016 Score=35.54 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9994589988678998883497
Q 000853 693 TALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
+||+|.+++|||||+|.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.86 E-value=0.0024 Score=34.45 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.85 E-value=0.0026 Score=34.28 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.+.|+|++||||||+.+.|+.+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.81 E-value=0.0027 Score=34.16 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99945899886789988834978
Q 000853 693 TALMGVSGAGKTTLMDVLSGRKT 715 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~g~~~ 715 (1252)
+.|+||||||||||.+.|.....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.80 E-value=0.0025 Score=34.37 Aligned_cols=23 Identities=39% Similarity=0.395 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.+.|.||+|+|||||++.++...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899971999999999999
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.78 E-value=0.002 Score=34.90 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=14.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.++++|++|+|||||++.|.+.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999678
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.76 E-value=0.0026 Score=34.18 Aligned_cols=20 Identities=40% Similarity=0.529 Sum_probs=13.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99945899886789988834
Q 000853 693 TALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~g 712 (1252)
+||+|+.+||||||+|.|.+
T Consensus 8 IaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99990778709999999997
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.74 E-value=0.0022 Score=34.67 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=19.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48739999458998867899888349
Q 000853 688 RPGILTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 688 ~~G~~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
+.+.++.|+||+||||||+-+.|+..
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 67828999899999879999999998
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.73 E-value=0.0029 Score=33.92 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899998799999999987
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.72 E-value=0.0026 Score=34.24 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 873999945899886789988834
Q 000853 689 PGILTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 689 ~G~~~~i~G~sGaGKtTLl~~l~g 712 (1252)
.-+++.++|++||||||+.+-++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999989999989999999997
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.72 E-value=0.0034 Score=33.53 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=21.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8739999458998867899888349
Q 000853 689 PGILTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 689 ~G~~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
..-.+||.|++|||||||++.|...
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8159861179988899999999998
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.70 E-value=0.0036 Score=33.31 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399994589988678998883497
Q 000853 691 ILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 691 ~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
..+.|+||||+||+||.+-|..+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.70 E-value=0.0027 Score=34.17 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=12.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+++|.+||||||+.+.|+..+
T Consensus 5 i~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 5 IVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999999999999999
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.69 E-value=0.0032 Score=33.69 Aligned_cols=21 Identities=38% Similarity=0.710 Sum_probs=11.5
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 985799999689998981998
Q 000853 3 LLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.++|++||||||+.+.|+-.+
T Consensus 6 il~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 6 FMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEESCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 998899998899999999994
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.69 E-value=0.0039 Score=33.11 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=19.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985799999689998981998
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
+.+|+||+||||||+.+.|+-.+
T Consensus 8 iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999998899999999997
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.67 E-value=0.0021 Score=34.83 Aligned_cols=21 Identities=48% Similarity=0.716 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+|+||+.||||||++.|.+.
T Consensus 8 IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999969985499999999823
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.0027 Score=34.12 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=20.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
+.+|-|++||||||+.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989997879999999999964
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.65 E-value=0.0028 Score=34.06 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
..|.|++||||||+.+.|+-++.
T Consensus 9 I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 9 IFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99889999999999999999986
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.62 E-value=0.002 Score=34.91 Aligned_cols=26 Identities=42% Similarity=0.443 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 87399994589988678998883497
Q 000853 689 PGILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 689 ~G~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.|-++.|+|++||||||+-+.|+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.61 E-value=0.0035 Score=33.40 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=15.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8739999458998867899888349
Q 000853 689 PGILTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 689 ~G~~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
+|-.+.|+||+||||||.-+.|+.+
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9638999899999889999999998
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.60 E-value=0.0044 Score=32.83 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+|+||+||||||+.+.|+-.+
T Consensus 6 iil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 6 AVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999986
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.59 E-value=0.0037 Score=33.27 Aligned_cols=21 Identities=43% Similarity=0.710 Sum_probs=11.5
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 985799999689998981998
Q 000853 3 LLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
+|+|++||||||+.+.|+-.+
T Consensus 4 ~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 4 VFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 998999998899999999983
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.59 E-value=0.0037 Score=33.30 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+|+|||||||+||.+.|.-..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.58 E-value=0.0031 Score=33.72 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+++|++|+|||||++.|.+...
T Consensus 16 I~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 16 LVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999898999999967887
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=95.56 E-value=0.0047 Score=32.63 Aligned_cols=21 Identities=48% Similarity=0.627 Sum_probs=12.6
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 985799999689998981998
Q 000853 3 LLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
+|+||..+|||||++.|+|..
T Consensus 9 aiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 9 GMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEECSTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCHHHHHHHHHHHH
T ss_conf 999345884999999997034
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.56 E-value=0.0044 Score=32.82 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399994589988678998883497
Q 000853 691 ILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 691 ~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.+++|.|++||||||+.+.|+.+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 889998999989899999999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.56 E-value=0.043 Score=26.67 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=36.2
Q ss_pred CCCCEEEEECCCCCC---CHHHHHHHHHHHHHHHHHCCCEEEEEECCC---------CHHHHHHCCCEEEEC
Q ss_conf 298173662698663---859899999999998572698899993489---------826883003189972
Q 000853 161 GPTRALFMDEISNGL---DSSTTFQIVSFLKHLVHITDATALISLLQP---------APETFDLFDDVMLMA 220 (1252)
Q Consensus 161 ~~p~IllLDEPTSgL---Ds~s~~~I~~~L~~l~~~~~~t~i~~i~q~---------~~~~~~lfD~I~vL~ 220 (1252)
.++++++.|..+.-+ +..........|.+.+...+.+++++.|.+ .......+|.++.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred CCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 088533220431430489999999999999999998698399998567512554457764046421699999
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.55 E-value=0.0047 Score=32.63 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=20.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
+.+|+||+||||||+.+.|+-.+.
T Consensus 10 iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899989999998999999999859
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.53 E-value=0.003 Score=33.87 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+|+|++|+|||||++.|.+.
T Consensus 3 V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 3 VLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999809
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.52 E-value=0.0033 Score=33.60 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+|-||+||||||+.+.|+-.+.
T Consensus 6 IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99789998798999999999969
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.52 E-value=0.004 Score=33.09 Aligned_cols=21 Identities=57% Similarity=0.805 Sum_probs=12.1
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 985799999689998981998
Q 000853 3 LLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
+|+||+||||||+.+.|+-.+
T Consensus 4 ~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 4 LLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 998899999799999999998
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.49 E-value=0.0046 Score=32.69 Aligned_cols=23 Identities=39% Similarity=0.601 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+++|++|+|||||++.|.+...
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHCCCCC
T ss_conf 99999999899999999808998
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.0027 Score=34.15 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399994589988678998883497
Q 000853 691 ILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 691 ~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
-.++|+|++++|||||+|.|.+..
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789998899998999999985898
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.49 E-value=0.0031 Score=33.73 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+++|++|+|||||++.+.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999659
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.47 E-value=0.0024 Score=34.39 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+++|++++|||||+|.|.|...
T Consensus 19 I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 19 VAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEECTTSSHHHHHTTTCCC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99988999989999999858985
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.45 E-value=0.0043 Score=32.85 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+.|+||+||||||+-+.|+.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 6999889999879999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.44 E-value=0.0038 Score=33.22 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+|+||+||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998799999899999999986
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.43 E-value=0.0043 Score=32.88 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+|+|++.||||||++.|+|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.41 E-value=0.0047 Score=32.62 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=29.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCCCCCCCEEEEECCCCCCCC
Q ss_conf 99994589988678998883497897079999999950783433335899736988899
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSP 750 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~ 750 (1252)
++||.|++||||||+-+.|........ ++ ..+..+++|+-+.+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~-------~~---------~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP-------EH---------RRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST-------TC---------CCEEEEEGGGGBCC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHC-------CC---------CCEEEEEEEEEECC
T ss_conf 999968999987689999999973046-------89---------96599952156898
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.38 E-value=0.0032 Score=33.71 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=23.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEE
Q ss_conf 9985799999689998981998999832689999
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSY 35 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~i 35 (1252)
..|.||+|+|||||++.|...+...+..-|-+.+
T Consensus 54 igitG~pGaGKSTli~~l~~~~~~~g~~vaViav 87 (323)
T d2qm8a1 54 VGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV 87 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 8611799888999999999987636875134434
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.38 E-value=0.0046 Score=32.68 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=11.5
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 99458998867899888349
Q 000853 694 ALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 694 ~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.++|++||||||+-+.|+.+
T Consensus 5 vliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 5 VLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
T ss_conf 99889999889999999998
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.35 E-value=0.0049 Score=32.50 Aligned_cols=20 Identities=40% Similarity=0.723 Sum_probs=11.1
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 98579999968999898199
Q 000853 3 LLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G~ 22 (1252)
+|+||+||||||+.+.|+-+
T Consensus 6 vl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 6 VLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEECCTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
T ss_conf 99899999989999999999
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.31 E-value=0.004 Score=33.04 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+++|++|+|||||++.|.+..
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.30 E-value=0.0041 Score=32.99 Aligned_cols=20 Identities=40% Similarity=0.637 Sum_probs=9.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99945899886789988834
Q 000853 693 TALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~g 712 (1252)
++++|.+|+|||||++.+.+
T Consensus 8 I~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999899999999967
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.28 E-value=0.0058 Score=32.06 Aligned_cols=33 Identities=33% Similarity=0.416 Sum_probs=25.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 99857999996899989819989998326899998912
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYR 39 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~ 39 (1252)
.++.||+|||||||.++|++++.. +-+.+|+-+
T Consensus 35 ilL~GpPGtGKT~la~~la~~~~~-----~~~~i~~d~ 67 (273)
T d1gvnb_ 35 FLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDNDT 67 (273)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTTT-----CCEEECTHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHC-----CEEEEECHH
T ss_conf 998897998899999999998651-----548983289
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.27 E-value=0.0061 Score=31.91 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.++|.||+||||||.-+.|+...
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.26 E-value=0.0057 Score=32.12 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.++++|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.25 E-value=0.0062 Score=31.89 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399994589988678998883497
Q 000853 691 ILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 691 ~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.++.++|.+|+||||+.+.|+...
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899998999999999999999999
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.23 E-value=0.0058 Score=32.05 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+.++|++|+|||||++.+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.22 E-value=0.0048 Score=32.56 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=18.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
+.+|.||+||||||+-+.|+-++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.22 E-value=0.0046 Score=32.68 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985799999689998981998
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
+..|+||+||||||+.+.|+-.+
T Consensus 10 iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 10 IIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999998799999999986
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.17 E-value=0.006 Score=31.96 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9994589988678998883497
Q 000853 693 TALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
+.|+|++||||||+.+.|+.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.17 E-value=0.0057 Score=32.09 Aligned_cols=23 Identities=22% Similarity=0.582 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.++++|.-+||||||+|+|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.16 E-value=0.0036 Score=33.37 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=10.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+|.|+|||||||+.+.|...
T Consensus 7 IgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 7 ISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEESCC---CCTHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899978099999999999
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.16 E-value=0.0061 Score=31.95 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999945899886789988834978
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRKT 715 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~~ 715 (1252)
.+.|.|++||||||+-+.|+.+..
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.16 E-value=0.0057 Score=32.10 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.+.|+||+||||||+.+.|+...
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.14 E-value=0.0058 Score=32.07 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.14 E-value=0.0048 Score=32.58 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998579999968999898199899
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSH 25 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~ 25 (1252)
.+|.|++||||||+.+.|+.++..
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999898998989999999999987
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.14 E-value=0.0068 Score=31.65 Aligned_cols=23 Identities=43% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+++|.+|+|||||++.+.+.-.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999899999999967987
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.13 E-value=0.0021 Score=34.79 Aligned_cols=23 Identities=43% Similarity=0.494 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
..+.|++||||||+.+.|+-++.
T Consensus 22 I~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 22 VWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99889999999999999999997
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.11 E-value=0.0072 Score=31.47 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
++.|+||+||||||..+.|+...
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.11 E-value=0.0053 Score=32.33 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=24.8
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7874873999945899886789988834
Q 000853 685 GTFRPGILTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 685 ~~i~~G~~~~i~G~sGaGKtTLl~~l~g 712 (1252)
|-+++|+++.|.|++|+|||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9986996999983899988999999999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.11 E-value=0.031 Score=27.54 Aligned_cols=24 Identities=38% Similarity=0.362 Sum_probs=19.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 739999458998867899888349
Q 000853 690 GILTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 690 G~~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
..++.++||+|+||||.+-=|+.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 868999899999889999999999
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.08 E-value=0.0082 Score=31.15 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=10.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
-+||+|.-.+|||||++.|.+
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~ 30 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITG 30 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHS
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 899997248869999999970
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.07 E-value=0.0068 Score=31.64 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9994589988678998883497
Q 000853 693 TALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
+-+.||+|+||||+.++++...
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997899974879999999998
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.07 E-value=0.0065 Score=31.77 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=15.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.+.++|.+|+|||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999996688
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.07 E-value=0.0067 Score=31.69 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9994589988678998883497
Q 000853 693 TALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
+.+.||+|+||||+.++++...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 8987999973889999998503
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.05 E-value=0.0081 Score=31.16 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=18.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998579999968999898199
Q 000853 1 MTLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~ 22 (1252)
+.+++|++||||||+.+-++-.
T Consensus 16 liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 16 VVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999899999999976
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.04 E-value=0.004 Score=33.08 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=10.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
+++|-|+.||||||+++.|+.
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999889999888999999998
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.04 E-value=0.006 Score=31.97 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=20.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7399994589988678998883497
Q 000853 690 GILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 690 G~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
+.-+.+.||+|+|||.|.++|+...
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 8669998999988889999986213
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.00 E-value=0.0083 Score=31.09 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.00 E-value=0.0071 Score=31.53 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999945899886789988834978
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRKT 715 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~~ 715 (1252)
.+.+.||+|+||||+.++++....
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.96 E-value=0.0076 Score=31.35 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=24.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 99857999996899989819989998326899998912
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYR 39 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~ 39 (1252)
.+++||+|+|||.|.++|+..+.. --+.+++..
T Consensus 52 iLl~GPpG~GKT~lAkalA~~~~~-----~~~~i~~s~ 84 (309)
T d1ofha_ 52 ILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATK 84 (309)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTC-----CEEEEEGGG
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC-----CHHCCCCCC
T ss_conf 999899998888999998621322-----100034433
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.95 E-value=0.0079 Score=31.24 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+||+|..++|||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.94 E-value=0.01 Score=30.59 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=23.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 487399994589988678998883497
Q 000853 688 RPGILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 688 ~~G~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
+.|-++-+.|.|||||||+.+.|..+.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 998699998999999899999999887
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.94 E-value=0.0076 Score=31.34 Aligned_cols=20 Identities=30% Similarity=0.591 Sum_probs=10.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99994589988678998883
Q 000853 692 LTALMGVSGAGKTTLMDVLS 711 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~ 711 (1252)
++||.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.92 E-value=0.0079 Score=31.22 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.+.++|++||||||+-+.|+.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.87 E-value=0.0072 Score=31.46 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.++++|.-.||||||+|+|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.84 E-value=0.0096 Score=30.72 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9994589988678998883497
Q 000853 693 TALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
+.|+||+||||||+.+.|+...
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.81 E-value=0.0084 Score=31.07 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=25.1
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 57874873999945899886789988834
Q 000853 684 TGTFRPGILTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 684 s~~i~~G~~~~i~G~sGaGKtTLl~~l~g 712 (1252)
.|-+++|+++.|.|++|+|||++..-++-
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 79862885999991799998999999999
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.80 E-value=0.0058 Score=32.04 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
-+.+.||+|+|||++.+++++..
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 48876689888359999999873
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.73 E-value=0.007 Score=31.56 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=28.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 999857999996899989819989998326899998912787655423887665445688
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~~~~~yv~Q~d~l~~ 60 (1252)
+.+|.|++||||||+.+.|...+... . ....+..++++|-+.+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~---~--------------~~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW---P--------------EHRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS---T--------------TCCCEEEEEGGGGBCC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHH---C--------------CCCCEEEEEEEEEECC
T ss_conf 99996899998768999999997304---6--------------8996599952156898
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.69 E-value=0.01 Score=30.60 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=21.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 87399994589988678998883497
Q 000853 689 PGILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 689 ~G~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
+..-+.+.||+|+|||++.+.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHC
T ss_conf 88867866899888228999999982
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.68 E-value=0.011 Score=30.31 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.+.|+||+||||||+.+.|+...
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.67 E-value=0.0097 Score=30.67 Aligned_cols=18 Identities=50% Similarity=0.615 Sum_probs=9.6
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 985799999689998981
Q 000853 3 LLLGHPGCGKTTLLSALS 20 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~ 20 (1252)
+|+||.+||||||++.|.
T Consensus 7 ~iiGhvd~GKSTL~~~Ll 24 (204)
T d2c78a3 7 GTIGHVDHGKTTLTAALT 24 (204)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHH
T ss_conf 999478984999999999
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.65 E-value=0.0098 Score=30.64 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=20.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7399994589988678998883497
Q 000853 690 GILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 690 G~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
-.-+.+.||+|+|||++.++++...
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 8079988969998899999986201
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.65 E-value=0.0097 Score=30.67 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+|+|.+-+|||||+|+|+|--
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 7688999998999999997889
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.64 E-value=0.01 Score=30.50 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+++|++||||||+.+.|+-++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.63 E-value=0.0095 Score=30.73 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.++++|++|+|||||++.+.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.62 E-value=0.0096 Score=30.70 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=23.4
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 787487399994589988678998883
Q 000853 685 GTFRPGILTALMGVSGAGKTTLMDVLS 711 (1252)
Q Consensus 685 ~~i~~G~~~~i~G~sGaGKtTLl~~l~ 711 (1252)
|-+++|+++.|.|++|+||||+..-++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 995588799998589898899999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.62 E-value=0.0093 Score=30.79 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
+.+|-|+.||||||+++.|+..+.
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999889999888999999998707
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.61 E-value=0.012 Score=30.21 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
++.|.|++||||||+.+.|+.+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998989989899999999999
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.61 E-value=0.012 Score=30.17 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
+++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.59 E-value=0.0055 Score=32.20 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9994589988678998883497
Q 000853 693 TALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
+.+.||+|.||||+.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8988979987888999999984
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.57 E-value=0.012 Score=30.19 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+++|.+|||||||++.|.+...
T Consensus 18 I~vvG~~~~GKSsLi~rl~~~~~ 40 (177)
T d1zj6a1 18 VIIVGLDNAGKTTILYQFSMNEV 40 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999898999999966888
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.57 E-value=0.022 Score=28.44 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=24.6
Q ss_pred CCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 2360578748739999458998867899888349
Q 000853 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 680 L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
+|.....+ .|.-+.|.|+||+||||+...|..+
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 78999999-9999999818999989999999985
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.53 E-value=0.014 Score=29.65 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 487399994589988678998883497
Q 000853 688 RPGILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 688 ~~G~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.|+-++.+.||.||||||++..+....
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~ 182 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQEL 182 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 410548987678777447799986662
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.53 E-value=0.0027 Score=34.09 Aligned_cols=20 Identities=40% Similarity=0.787 Sum_probs=10.0
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 98579999968999898199
Q 000853 3 LLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G~ 22 (1252)
+++|++++|||||++.|+|.
T Consensus 4 ~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 4 VIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEECCHHHHTCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHCC
T ss_conf 99999999999999999589
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.42 E-value=0.01 Score=30.49 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=24.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7874873999945899886789988834
Q 000853 685 GTFRPGILTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 685 ~~i~~G~~~~i~G~sGaGKtTLl~~l~g 712 (1252)
|-+++|+++.|.|++|+|||++..-++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9976897999988998878899999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.013 Score=29.81 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.+.|+||+||||||..+.|+...
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.36 E-value=0.0086 Score=31.01 Aligned_cols=80 Identities=15% Similarity=0.163 Sum_probs=42.0
Q ss_pred HHHHHCCCEEEEECCCCCCCHHH------HHHHHHHHHH-HH---HC-CCEEEEEECCCCHHHHHHHCCEEEEEC--CCE
Q ss_conf 99950996889939999999999------9999999999-98---77-989999945898899997200146643--958
Q 000853 816 VELVANPSIIFMDEPTSGLDARA------AAIVMRAVKN-VV---ET-GRTVVCTIHQPSIDIFEAFDDLILMKN--GGR 882 (1252)
Q Consensus 816 ~~l~~~p~il~lDEptsgLD~~~------~~~i~~~l~~-~~---~~-g~tvi~~~h~~~~~~~~~~d~i~~l~~--gg~ 882 (1252)
.+--..|.|+++||--+=..... ...+...+.. .. .. +..||+++++|.. .|.-+. .. =.+
T Consensus 92 ~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~-----ld~al~-r~gRfd~ 165 (258)
T d1e32a2 92 EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS-----IDPALR-RFGRFDR 165 (258)
T ss_dssp HHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGG-----SCGGGT-STTSSCE
T ss_pred HHHHCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCC-----CCHHHH-HCCCCCC
T ss_conf 9986499499852111322578877770689998775001101234688117975799310-----252454-2463023
Q ss_pred EEEECCCCCCCHHHHHHHHHC
Q ss_conf 999669987501588898519
Q 000853 883 IIYSGPLGQHSCKVIDYFESI 903 (1252)
Q Consensus 883 ~~~~g~~~~~~~~~~~yf~~~ 903 (1252)
.++.++|+. +.-...|..+
T Consensus 166 ~i~~~~P~~--~~R~~il~~~ 184 (258)
T d1e32a2 166 EVDIGIPDA--TGRLEILQIH 184 (258)
T ss_dssp EEECCCCCH--HHHHHHHHHT
T ss_pred EEECCCCCH--HHHHHHHHHH
T ss_conf 237899998--8999873220
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.35 E-value=0.015 Score=29.58 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+|+||+||||||+.+.|+-.+.
T Consensus 9 IiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 9 AAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHHBC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999987999999999979
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.33 E-value=0.011 Score=30.44 Aligned_cols=21 Identities=33% Similarity=0.688 Sum_probs=13.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+++|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999996989999999709
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.32 E-value=0.01 Score=30.61 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=17.7
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 99985799999689998981
Q 000853 1 MTLLLGHPGCGKTTLLSALS 20 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~ 20 (1252)
+.+|.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.32 E-value=0.016 Score=29.30 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=19.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8739999458998867899888349
Q 000853 689 PGILTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 689 ~G~~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+.+++++||+|+||||.+-=|+.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9779999899999889999999999
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.32 E-value=0.01 Score=30.59 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=10.7
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9857999996899989819
Q 000853 3 LLLGHPGCGKTTLLSALSG 21 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G 21 (1252)
+++|++|+|||||++.+.+
T Consensus 6 ~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 6 TLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHC
T ss_conf 9999999898999999971
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.31 E-value=0.0022 Score=34.70 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.++++|.+++|||||+|.|+|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.31 E-value=0.015 Score=29.59 Aligned_cols=18 Identities=39% Similarity=0.505 Sum_probs=9.4
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 985799999689998981
Q 000853 3 LLLGHPGCGKTTLLSALS 20 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~ 20 (1252)
+|.|+.||||||+.+++.
T Consensus 6 gITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 6 GLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEECSTTSCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 988888788999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.31 E-value=0.015 Score=29.45 Aligned_cols=27 Identities=41% Similarity=0.437 Sum_probs=21.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 487399994589988678998883497
Q 000853 688 RPGILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 688 ~~G~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
+.|-+++|-|+.||||||+.+.|....
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 980599998998889999999999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.30 E-value=0.015 Score=29.47 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=21.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 87399994589988678998883497
Q 000853 689 PGILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 689 ~G~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.+..+.|.||+|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.28 E-value=0.015 Score=29.44 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=31.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 99994589988678998883497897079999999950783433335899736988899999999999998
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSA 762 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~a 762 (1252)
++||.|++|||||||-+.|...... .......+..++.||.+ +|-.|-..++.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~---------------~~~~~~~v~~iS~DdfY---~t~~~r~~L~~ 81 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLME---------------KYGGEKSIGYASIDDFY---LTHEDQLKLNE 81 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH---------------HHGGGSCEEEEEGGGGB---CCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---------------HHCCCCCEEEECCCCCC---CCHHHHHHHHH
T ss_conf 9983799878899999999999998---------------72778606763567777---88899999852
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.27 E-value=0.0086 Score=31.01 Aligned_cols=87 Identities=17% Similarity=0.299 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCC----------HHHHHHHHHHHHHH---HH-CCCEEEEEECCCCHHHHHHHCC
Q ss_conf 9999999999950996889939999999----------99999999999999---87-7989999945898899997200
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLD----------ARAAAIVMRAVKNV---VE-TGRTVVCTIHQPSIDIFEAFDD 873 (1252)
Q Consensus 808 ~rkrv~ia~~l~~~p~il~lDEptsgLD----------~~~~~~i~~~l~~~---~~-~g~tvi~~~h~~~~~~~~~~d~ 873 (1252)
++-|-.+..+-...|.++++||--.-.. ....+.+...+..+ .. .+.-+|.+++.|.. .|.
T Consensus 87 ~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~-----ld~ 161 (265)
T d1r7ra3 87 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI-----IDP 161 (265)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTT-----TSC
T ss_pred HHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHH-----CCH
T ss_conf 999999999986398435687546324557876788737999999999999628677799899991799222-----799
Q ss_pred EEEEECC--CEEEEECCCCCCCHHHHHHHHH
Q ss_conf 1466439--5899966998750158889851
Q 000853 874 LILMKNG--GRIIYSGPLGQHSCKVIDYFES 902 (1252)
Q Consensus 874 i~~l~~g--g~~~~~g~~~~~~~~~~~yf~~ 902 (1252)
-+ +..| .+.++.++++. +.-.+.|..
T Consensus 162 al-~r~gRf~~~i~~~~p~~--~~R~~il~~ 189 (265)
T d1r7ra3 162 AI-LRPGRLDQLIYIPLPDE--KSRVAILKA 189 (265)
T ss_dssp GG-GSSTTSEEEEECCCCCC--HHHHHHHHH
T ss_pred HH-HCCCCCCEEEEECCHHH--HHHHHHHHH
T ss_conf 78-07877647999566078--889999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.24 E-value=0.011 Score=30.42 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=12.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99857999996899989819
Q 000853 2 TLLLGHPGCGKTTLLSALSG 21 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G 21 (1252)
.+++|++|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999198999999973
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.23 E-value=0.015 Score=29.44 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=10.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99945899886789988834
Q 000853 693 TALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~g 712 (1252)
++++|++|+|||||++.+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999198999999961
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.042 Score=26.74 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+|+|++|+|||||++.+.+...
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~~ 30 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNKF 30 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999198999999961999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.20 E-value=0.013 Score=29.99 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
++|.||+|+|||||++.++-...
T Consensus 32 i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 32 TLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99986999829999999999779
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.16 E-value=0.031 Score=27.56 Aligned_cols=28 Identities=29% Similarity=0.223 Sum_probs=21.9
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8748739999458998867899888349
Q 000853 686 TFRPGILTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 686 ~i~~G~~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
..-.|.-+.+.|+||+||||+...|..+
T Consensus 10 v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 10 VDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 9999999999808999989999999985
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.16 E-value=0.0061 Score=31.94 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978099999999999
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.15 E-value=0.017 Score=29.18 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.+.|+||+||||||+-+.|+...
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.14 E-value=0.019 Score=28.93 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.++.||+|+||||+..+|+..+.
T Consensus 55 lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99987999988899999999987
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.13 E-value=0.015 Score=29.55 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+|-|+.||||||+++.|+..+.
T Consensus 5 I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 5 ISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp EEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99987888779999999999973
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.11 E-value=0.015 Score=29.47 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999458998867899888349
Q 000853 693 TALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
+.+.||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.09 E-value=0.014 Score=29.66 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=9.1
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999458998867899888
Q 000853 693 TALMGVSGAGKTTLMDVL 710 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l 710 (1252)
+||+|..|||||||...|
T Consensus 9 i~i~gh~~~GKTtL~e~l 26 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERI 26 (276)
T ss_dssp EEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHH
T ss_conf 999958989989999999
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.09 E-value=0.011 Score=30.44 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
.+||+|.+.+|||||+++|++
T Consensus 12 kiGivG~Pn~GKSTlfnalT~ 32 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITK 32 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 799978999989999999977
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.08 E-value=0.015 Score=29.50 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.+||+|.+.+|||||+|+|+|..
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.05 E-value=0.017 Score=29.19 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+.++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.03 E-value=0.014 Score=29.67 Aligned_cols=19 Identities=58% Similarity=0.810 Sum_probs=12.3
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9985799999689998981
Q 000853 2 TLLLGHPGCGKTTLLSALS 20 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~ 20 (1252)
.+|+||.|||||||...|.
T Consensus 5 v~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999488980999999999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.03 E-value=0.008 Score=31.19 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=23.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 73999945899886789988834978
Q 000853 690 GILTALMGVSGAGKTTLMDVLSGRKT 715 (1252)
Q Consensus 690 G~~~~i~G~sGaGKtTLl~~l~g~~~ 715 (1252)
+..++|-|+.||||||+++.|+....
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.96 E-value=0.019 Score=28.80 Aligned_cols=23 Identities=39% Similarity=0.419 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.+.|+||+||||||+.+.|+.+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.94 E-value=0.018 Score=29.02 Aligned_cols=24 Identities=46% Similarity=0.708 Sum_probs=21.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998579999968999898199899
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSH 25 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~ 25 (1252)
.++.||+|+||||+.++|+.++..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 898799997388999999850388
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.93 E-value=0.015 Score=29.51 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=20.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
++.|.||+|||||||..-++....
T Consensus 25 v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999995899999999999999998
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.014 Score=29.78 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=10.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99945899886789988834
Q 000853 693 TALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~g 712 (1252)
++++|++|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999982
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.91 E-value=0.018 Score=29.00 Aligned_cols=22 Identities=50% Similarity=0.632 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+++|++|+|||||++.+.+..
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989999999996487
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.02 Score=28.68 Aligned_cols=23 Identities=43% Similarity=0.735 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+++|++|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.90 E-value=0.018 Score=28.98 Aligned_cols=23 Identities=48% Similarity=0.615 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
..+.||+|+||||+.++++.++.
T Consensus 48 lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99978999748799999999987
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.90 E-value=0.018 Score=29.06 Aligned_cols=72 Identities=21% Similarity=0.268 Sum_probs=37.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHHHHH
Q ss_conf 99688993999999999999999999999877989999945898899997200146643958999669987501588898
Q 000853 821 NPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900 (1252)
Q Consensus 821 ~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~~l~~gg~~~~~g~~~~~~~~~~~yf 900 (1252)
+.+++++||.-. +.......+...+.... .....+++.++.+ .+... +.+ --.++.+.++.. ++...+.
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~-~~~~~i~~~~~~~-~i~~~-----l~s-r~~~i~~~~~~~--~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYS-NSTRFAFACNQSN-KIIEP-----LQS-QCAILRYSKLSD--EDVLKRL 169 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTT-TTEEEEEEESCGG-GSCHH-----HHT-TSEEEECCCCCH--HHHHHHH
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHCCCCC-CCEEEEECCCCHH-HHHHH-----HHH-HHHHHHHCCCCH--HHHHHHH
T ss_conf 359999824432-32157787752011233-3336653147430-21067-----887-777765313322--4567888
Q ss_pred HHC
Q ss_conf 519
Q 000853 901 ESI 903 (1252)
Q Consensus 901 ~~~ 903 (1252)
..+
T Consensus 170 ~~i 172 (224)
T d1sxjb2 170 LQI 172 (224)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 777
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.88 E-value=0.019 Score=28.86 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+.++|.+|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.021 Score=28.65 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9985799999689998981
Q 000853 2 TLLLGHPGCGKTTLLSALS 20 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~ 20 (1252)
.+|.|..||||||..+++.
T Consensus 6 IgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 6 VALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9978988688999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.85 E-value=0.016 Score=29.41 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=19.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
+.+++||+|+||||.+-=|+-++.
T Consensus 8 vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 8 VVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999988999999999999
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.82 E-value=0.019 Score=28.85 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=21.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 73999945899886789988834978
Q 000853 690 GILTALMGVSGAGKTTLMDVLSGRKT 715 (1252)
Q Consensus 690 G~~~~i~G~sGaGKtTLl~~l~g~~~ 715 (1252)
...+.|.||+|+||||+++.++....
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 88168889899989999999999975
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.81 E-value=0.016 Score=29.27 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=19.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8739999458998867899888349
Q 000853 689 PGILTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 689 ~G~~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
+-.+++++||+|+||||.+-=|+.+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999889999999999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.78 E-value=0.021 Score=28.62 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+++||+|+||||.+--|+-++.
T Consensus 14 i~lvGptGvGKTTTiAKLAa~~~ 36 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAKMFV 36 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999988999999999999
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.75 E-value=0.021 Score=28.58 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+++|.+|+|||||++-+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.74 E-value=0.02 Score=28.77 Aligned_cols=20 Identities=15% Similarity=0.476 Sum_probs=12.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99857999996899989819
Q 000853 2 TLLLGHPGCGKTTLLSALSG 21 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G 21 (1252)
.+++|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999982
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.72 E-value=0.018 Score=29.06 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=18.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999458998867899888349
Q 000853 691 ILTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 691 ~~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+++++||+|+||||.+-=|+.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999989999999999
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.72 E-value=0.016 Score=29.41 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=11.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99857999996899989819
Q 000853 2 TLLLGHPGCGKTTLLSALSG 21 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G 21 (1252)
.+++|++|+|||||++.+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999399999999962
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.71 E-value=0.017 Score=29.14 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
++||.|+.||||||+.+.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.70 E-value=0.04 Score=26.87 Aligned_cols=33 Identities=27% Similarity=0.174 Sum_probs=24.9
Q ss_pred CCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 2360578748739999458998867899888349
Q 000853 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 680 L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
+|. +...-.|.-+.|.|+||+||||+...|..+
T Consensus 6 ~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 6 LHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 889-999999999999808999999999999984
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.70 E-value=0.024 Score=28.28 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=21.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC-CC
Q ss_conf 99857999996899989819989-99
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS-HS 26 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~-~~ 26 (1252)
.+|+|.-+||||||+|+|+|.-- |.
T Consensus 27 ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 27 IVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCCC
T ss_conf 99981898979999999968997887
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.68 E-value=0.035 Score=27.20 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
+.|+|.+.+|||||+++|++--
T Consensus 13 iGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 13 TGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp EEEEECSSSSHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9997899998999999997789
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.66 E-value=0.016 Score=29.33 Aligned_cols=35 Identities=40% Similarity=0.700 Sum_probs=27.1
Q ss_pred CCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 22236057874873999945899886789988834978
Q 000853 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT 715 (1252)
Q Consensus 678 ~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~ 715 (1252)
.+|+.++. |=-+++|+|+.++|||||||.|.|...
T Consensus 23 ~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 23 KILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp HHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred HHHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 99970799---879999889999979999999809987
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.66 E-value=0.0084 Score=31.07 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=13.1
Q ss_pred EEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 98579999968999898199899
Q 000853 3 LLLGHPGCGKTTLLSALSGKLSH 25 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G~~~~ 25 (1252)
++.|++|+|||||++.+++.+++
T Consensus 32 Ll~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 32 LVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp EEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEECCCCCCHHHHHHHHHHHCCC
T ss_conf 99889985299999999873798
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.66 E-value=0.023 Score=28.34 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.++.||+|+|||++.++|+.+..
T Consensus 43 vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 43 VLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99889699988999999862010
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.64 E-value=0.022 Score=28.48 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.++++|++|+|||||++.+.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.62 E-value=0.022 Score=28.45 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=12.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
+.|+|-+-+|||||+++|++-
T Consensus 5 ~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 5 CGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 888899999889999999779
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.61 E-value=0.017 Score=29.19 Aligned_cols=20 Identities=35% Similarity=0.738 Sum_probs=11.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99857999996899989819
Q 000853 2 TLLLGHPGCGKTTLLSALSG 21 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G 21 (1252)
.+++|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999971
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.61 E-value=0.029 Score=27.74 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
+.+|+||-++|||||||.|.|...
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999889999979999999809987
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.61 E-value=0.03 Score=27.64 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=13.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989929999999997286
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.59 E-value=0.027 Score=27.94 Aligned_cols=23 Identities=43% Similarity=0.793 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.++.||+|+|||++.++|+.++.
T Consensus 48 iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCCCHHHHHHHHHCC
T ss_conf 78668998882289999999829
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.59 E-value=0.025 Score=28.14 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+|+|.-.||||||+|+|+|.-
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9997689897999999996898
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.59 E-value=0.015 Score=29.56 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=13.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+++|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997998999999999809
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.57 E-value=0.015 Score=29.46 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=19.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 739999458998867899888349
Q 000853 690 GILTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 690 G~~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
-.+++++||+|+||||.+-=|+.+
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 989999899999989999999999
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.54 E-value=0.023 Score=28.33 Aligned_cols=23 Identities=43% Similarity=0.836 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.++.||+|+|||+|.++++++..
T Consensus 44 iLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 44 VLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp EEEBCCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCHHHHHHHHHHHC
T ss_conf 78878998763047788787718
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=93.52 E-value=0.018 Score=29.08 Aligned_cols=19 Identities=42% Similarity=0.543 Sum_probs=9.8
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9857999996899989819
Q 000853 3 LLLGHPGCGKTTLLSALSG 21 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G 21 (1252)
+|+||..+|||||++.|.+
T Consensus 7 ~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 7 GTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHH
T ss_conf 9995889809999999999
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.51 E-value=0.02 Score=28.76 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=30.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 99985799999689998981998999832689999891278765542388766544568889889999999
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFS 71 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~~~~~yv~Q~d~l~~~lTVrEnL~f~ 71 (1252)
+..|-|++|||||||...|.-.+... .| ....+..++.+|-. +|-.|....+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~---~~-------------~~~~v~~iS~DdfY---~t~~~r~~L~ 80 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK---YG-------------GEKSIGYASIDDFY---LTHEDQLKLN 80 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH---HG-------------GGSCEEEEEGGGGB---CCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---HC-------------CCCCEEEECCCCCC---CCHHHHHHHH
T ss_conf 99837998788999999999999987---27-------------78606763567777---8889999985
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.51 E-value=0.022 Score=28.44 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.49 E-value=0.026 Score=28.03 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=26.0
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6057874873999945899886789988834
Q 000853 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 682 ~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g 712 (1252)
|.=.-+-.|+..+|.|++|+|||||+..++.
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 4125645787556867999887899999999
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.46 E-value=0.025 Score=28.17 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.++.|+||+||||+...|..+
T Consensus 17 vl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 17 VLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999808999989999999985
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.45 E-value=0.016 Score=29.38 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
.+.++|++|+|||||++-+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999988733
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.44 E-value=0.025 Score=28.11 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+++|++|+|||||++.+.+..
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999909899999998299
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.44 E-value=0.052 Score=26.17 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=13.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
.++++|.+|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999971
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.43 E-value=0.017 Score=29.13 Aligned_cols=19 Identities=42% Similarity=0.581 Sum_probs=9.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9994589988678998883
Q 000853 693 TALMGVSGAGKTTLMDVLS 711 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~ 711 (1252)
++|+|++|+|||||++.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~ 27 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFS 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999909899999996
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.43 E-value=0.023 Score=28.32 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=37.3
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEE-EEEECCCCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHHHHH
Q ss_conf 96889939999999999999999999998779899-99945898899997200146643958999669987501588898
Q 000853 822 PSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTV-VCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900 (1252)
Q Consensus 822 p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tv-i~~~h~~~~~~~~~~d~i~~l~~gg~~~~~g~~~~~~~~~~~yf 900 (1252)
.+++++||.- .+.......+.+.+.+.. ..++ +++.+++. .+... +.+ -...+.+-++.. .++..+.
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~--~~~~~~~~~~~~~-~i~~~-----i~s-r~~~i~~~~~~~--~~i~~~l 167 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYT--KNTRFCVLANYAH-KLTPA-----LLS-QCTRFRFQPLPQ--EAIERRI 167 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG-GSCHH-----HHT-TSEEEECCCCCH--HHHHHHH
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHHHHCC--CCEEECCCCCCHH-HHHHH-----HHH-HHHHHCCCCCCC--CCCCCCC
T ss_conf 1899996632-000237899998863112--0023201267087-75999-----998-875401235652--0001102
Q ss_pred HHC
Q ss_conf 519
Q 000853 901 ESI 903 (1252)
Q Consensus 901 ~~~ 903 (1252)
..+
T Consensus 168 ~~I 170 (227)
T d1sxjc2 168 ANV 170 (227)
T ss_dssp HHH
T ss_pred CCC
T ss_conf 122
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.42 E-value=0.022 Score=28.43 Aligned_cols=23 Identities=48% Similarity=0.761 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.++-||+|+||||+.+++++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.40 E-value=0.018 Score=29.08 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996789999999868
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.39 E-value=0.023 Score=28.30 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.++.|+||+|||||...|.-+
T Consensus 18 vli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 18 VLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEESSSSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999818999989999999985
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.38 E-value=0.022 Score=28.52 Aligned_cols=20 Identities=35% Similarity=0.700 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99857999996899989819
Q 000853 2 TLLLGHPGCGKTTLLSALSG 21 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G 21 (1252)
.+++|++|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999972
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.37 E-value=0.022 Score=28.47 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+++||+|+||||.+--|+-++.
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999988999999999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.37 E-value=0.026 Score=28.00 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
.++++|.+|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.28 E-value=0.038 Score=26.98 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=24.9
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7874873999945899886789988834
Q 000853 685 GTFRPGILTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 685 ~~i~~G~~~~i~G~sGaGKtTLl~~l~g 712 (1252)
|-+++|.++-|.|++|+|||||.--++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9966735899805777478999999999
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.27 E-value=0.021 Score=28.64 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=41.5
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHHHH
Q ss_conf 09968899399999999999999999999987798999994589889999720014664395899966998750158889
Q 000853 820 ANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDY 899 (1252)
Q Consensus 820 ~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~~l~~gg~~~~~g~~~~~~~~~~~y 899 (1252)
.+.+++++||.-. |...+...+.+.+.... ....+|++++.+....-..-+|. ..+.+-|+.. +++.++
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~~i~~~l~sR~-------~~i~~~~~~~--~~~~~~ 198 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSPIIAPIKSQC-------LLIRCPAPSD--SEISTI 198 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCSSCHHHHTTS-------EEEECCCCCH--HHHHHH
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCC-CCCCCEEEECCCCCHHHHHHCCH-------HEEEECCCCH--HHHHHH
T ss_conf 8724999424333-45431112210022135-66430001021110025442100-------0243035330--468999
Q ss_pred HHHC
Q ss_conf 8519
Q 000853 900 FESI 903 (1252)
Q Consensus 900 f~~~ 903 (1252)
.+.+
T Consensus 199 l~~i 202 (252)
T d1sxje2 199 LSDV 202 (252)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.27 E-value=0.03 Score=27.61 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=16.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 739999458998867899888349
Q 000853 690 GILTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 690 G~~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
|..++|-|+.||||||+.+.|...
T Consensus 2 gkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 2 SKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 878999899888799999999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.25 E-value=0.018 Score=28.96 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=11.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
.+.++|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.24 E-value=0.022 Score=28.48 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+++|.+|+|||||++.+.+..
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989939999999997199
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.20 E-value=0.029 Score=27.77 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.++++|.+|+|||||++-+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.20 E-value=0.024 Score=28.21 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
++||.|..||||||..+.+...
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.18 E-value=0.019 Score=28.92 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=11.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
.++++|.+|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899298999999971
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.15 E-value=0.11 Score=24.16 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+++|++|+|||||++.+.+..
T Consensus 8 i~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 8 LGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989978999999997197
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.13 E-value=0.028 Score=27.85 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+.++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.12 E-value=0.034 Score=27.32 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=20.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 873999945899886789988834978
Q 000853 689 PGILTALMGVSGAGKTTLMDVLSGRKT 715 (1252)
Q Consensus 689 ~G~~~~i~G~sGaGKtTLl~~l~g~~~ 715 (1252)
.|..+++-|+.||||||+.+.|+.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.08 E-value=0.023 Score=28.31 Aligned_cols=21 Identities=33% Similarity=0.667 Sum_probs=14.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999729
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.06 E-value=0.017 Score=29.22 Aligned_cols=19 Identities=47% Similarity=0.744 Sum_probs=10.4
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9857999996899989819
Q 000853 3 LLLGHPGCGKTTLLSALSG 21 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G 21 (1252)
+++|.+|+|||||++.+.+
T Consensus 10 ~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 10 LLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEECCCCC-----------
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9999999499999999970
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.035 Score=27.23 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.++++|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.04 E-value=0.032 Score=27.49 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+++||+|+||||.+-=|+-++.
T Consensus 15 i~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp EEEECSCCC----HHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999998999999999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.02 E-value=0.026 Score=28.08 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=25.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCC
Q ss_conf 9985799999689998981998999832689999891278
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLD 41 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~ 41 (1252)
..+.|.|||||||+.+.|.-.+... ...-.+.++|..++
T Consensus 27 IwltGlsGsGKTTia~~L~~~l~~~-~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 27 IWLTGLSASGKSTLAVELEHQLVRD-RRVHAYRLDGDNIR 65 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEECHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCHHHH
T ss_conf 9998999999899999999887774-27508997536788
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.03 Score=27.68 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+|+|++|+|||||++.+.+.
T Consensus 7 v~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 7 IAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998992989999999719
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.01 E-value=0.032 Score=27.50 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
..+-||+|+||||+.++++.++.
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l~ 58 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKELY 58 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999984999999999970
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.038 Score=26.97 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.98 E-value=0.037 Score=27.04 Aligned_cols=24 Identities=42% Similarity=0.569 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998579999968999898199899
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSH 25 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~ 25 (1252)
.+|.||+|+||||+++.++..+..
T Consensus 46 lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 46 ATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 688898999899999999999754
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.98 E-value=0.033 Score=27.41 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+.++|.+|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.97 E-value=0.021 Score=28.66 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=12.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
.+.++|++|+|||||++.+.+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999878999999844
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.97 E-value=0.024 Score=28.26 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=12.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
.+.++|.+|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.94 E-value=0.027 Score=27.96 Aligned_cols=20 Identities=60% Similarity=0.893 Sum_probs=9.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99945899886789988834
Q 000853 693 TALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~g 712 (1252)
++|-|.-||||||+.+.|..
T Consensus 3 I~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989987899999999999
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.94 E-value=0.042 Score=26.73 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=21.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 87399994589988678998883497
Q 000853 689 PGILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 689 ~G~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
|...+.++||+|+|||.|.+.|+...
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 76589997787500699999998633
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.90 E-value=0.033 Score=27.40 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+++||+|+||||.+-=|+-++.
T Consensus 12 i~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999998999999999999
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.89 E-value=0.032 Score=27.51 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+.++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.88 E-value=0.035 Score=27.22 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.++.||+|+|||++.++++.+..
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCHHHHHHHHHHHC
T ss_conf 68766998883089999998748
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.87 E-value=0.033 Score=27.42 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=9.3
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9857999996899989819
Q 000853 3 LLLGHPGCGKTTLLSALSG 21 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G 21 (1252)
+|+|.+|+|||||++.+.+
T Consensus 9 vviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 9 VVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9999999799999999974
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.82 E-value=0.036 Score=27.15 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
-+|++|.-++|||||++.|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.82 E-value=0.025 Score=28.13 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+++|++|+|||||++.+.+..
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~~ 41 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIGE 41 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCSE
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999998899998873387
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.81 E-value=0.032 Score=27.50 Aligned_cols=55 Identities=18% Similarity=0.335 Sum_probs=37.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 99857999996899989819989998326899998912787655423887665445688898899999997
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSA 72 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~~~~~yv~Q~d~l~~~lTVrEnL~f~a 72 (1252)
.+++||+|+|||-|.+.|++.++- --+.+++... ..+|||+. |+ -++-+.+.-.+
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~f------TeaGYvG~-DV----esii~~L~~~a 106 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKF------TEVGYVGK-EV----DSIIRDLTDSA 106 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGG------C----CCC-CT----HHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCEE------EECCEEEC-CH----HHHHHHHHHHH
T ss_conf 799899998899999999987389-----8898625511------41111104-44----57899999987
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.80 E-value=0.033 Score=27.39 Aligned_cols=21 Identities=43% Similarity=0.718 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.80 E-value=0.035 Score=27.26 Aligned_cols=20 Identities=35% Similarity=0.677 Sum_probs=11.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99857999996899989819
Q 000853 2 TLLLGHPGCGKTTLLSALSG 21 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G 21 (1252)
.+++|.+|+|||||++.+..
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999799999999984
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.80 E-value=0.03 Score=27.67 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+|+|.+|+|||||++.+.+..
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989938899999997199
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=92.77 E-value=0.035 Score=27.22 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=12.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99945899886789988834
Q 000853 693 TALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~g 712 (1252)
++++|.-.+|||||++.|..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99993789898999999999
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.72 E-value=0.036 Score=27.15 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=10.6
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 985799999689998981
Q 000853 3 LLLGHPGCGKTTLLSALS 20 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~ 20 (1252)
+++|.+|+|||||++.+.
T Consensus 6 ~liG~~~vGKTsLl~~~~ 23 (165)
T d1z06a1 6 IVIGDSNVGKTCLTYRFC 23 (165)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 999999929899999997
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=92.70 E-value=0.023 Score=28.36 Aligned_cols=27 Identities=26% Similarity=0.112 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 873999945899886789988834978
Q 000853 689 PGILTALMGVSGAGKTTLMDVLSGRKT 715 (1252)
Q Consensus 689 ~G~~~~i~G~sGaGKtTLl~~l~g~~~ 715 (1252)
.+.++.+.||+|+|||++.++|++...
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 767699989999888999999999859
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.69 E-value=0.031 Score=27.53 Aligned_cols=18 Identities=39% Similarity=0.709 Sum_probs=9.1
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 985799999689998981
Q 000853 3 LLLGHPGCGKTTLLSALS 20 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~ 20 (1252)
+++||.++|||||+..|.
T Consensus 7 ~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 7 IVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHH
T ss_conf 999447999999999999
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.66 E-value=0.029 Score=27.71 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=10.3
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9857999996899989819
Q 000853 3 LLLGHPGCGKTTLLSALSG 21 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G 21 (1252)
+++|.+|+|||||++.+.+
T Consensus 7 vlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 7 VLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9999999398999999982
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.66 E-value=0.033 Score=27.41 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=3.9
Q ss_pred EECCCCCCHHHH
Q ss_conf 857999996899
Q 000853 4 LLGHPGCGKTTL 15 (1252)
Q Consensus 4 IlGpsGSGKSTL 15 (1252)
|+|++|||||++
T Consensus 55 I~G~tGsGKT~~ 66 (433)
T d1e9ra_ 55 VNGATGTGKSVL 66 (433)
T ss_dssp EEECTTSSHHHH
T ss_pred EEECCCCCHHHH
T ss_conf 990799968999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.64 E-value=0.035 Score=27.20 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+++|.+|+|||||++-+.+.
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999739
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.62 E-value=0.043 Score=26.69 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+.++|.+|+|||||++-+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.62 E-value=0.039 Score=26.92 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+++|.+|+|||||++.+.+..
T Consensus 10 i~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989908899999997199
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.61 E-value=0.021 Score=28.57 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
++.+.||+|.||||+++.++...
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89967899989999999999998
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.57 E-value=0.051 Score=26.23 Aligned_cols=27 Identities=37% Similarity=0.352 Sum_probs=24.2
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 748739999458998867899888349
Q 000853 687 FRPGILTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 687 i~~G~~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+||.++.+-|+=||||||+.+.++.-
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 799829999668776588999998764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.57 E-value=0.026 Score=28.07 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+++|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.56 E-value=0.04 Score=26.88 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+.++|.+|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.51 E-value=0.04 Score=26.83 Aligned_cols=23 Identities=48% Similarity=0.808 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.++.||+|+|||+|.++|+.+..
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 88766898883599999998739
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.42 E-value=0.043 Score=26.68 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+.|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.42 E-value=0.027 Score=27.88 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=12.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99857999996899989819
Q 000853 2 TLLLGHPGCGKTTLLSALSG 21 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G 21 (1252)
.+++|++|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999099999999970
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.049 Score=26.33 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.+.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.39 E-value=0.025 Score=28.18 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=9.0
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9857999996899989819
Q 000853 3 LLLGHPGCGKTTLLSALSG 21 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G 21 (1252)
+++|++|+|||||++.+.+
T Consensus 7 ~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 7 VLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEECTTSSHHHHHHTTC-
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9999999088999999984
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.38 E-value=0.036 Score=27.13 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+|.|+||+||||+...|..+
T Consensus 18 vli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 18 VLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999808999999999999984
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.34 E-value=0.032 Score=27.50 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=18.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998579999968999898199
Q 000853 1 MTLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~ 22 (1252)
++.|.||+|||||||..-++-.
T Consensus 36 ~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 36 ITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp EEEEEESTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999838999889999999998
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.27 E-value=0.045 Score=26.52 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+.++|.+|+|||||++-+.+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.26 E-value=0.045 Score=26.57 Aligned_cols=19 Identities=32% Similarity=0.613 Sum_probs=10.9
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9857999996899989819
Q 000853 3 LLLGHPGCGKTTLLSALSG 21 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G 21 (1252)
+++|.+|+|||||++-+..
T Consensus 8 ~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 8 CLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9999899499999999973
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.22 E-value=0.046 Score=26.52 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=14.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+++|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999739
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.19 E-value=0.035 Score=27.25 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+++|.+|+|||||++-+.+.
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.15 E-value=0.051 Score=26.23 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994589988678998883497
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.+.++|.+|+|||||++-+.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.15 E-value=0.041 Score=26.79 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=13.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
.+.++|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.15 E-value=0.045 Score=26.56 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.++++|.+|+|||||++-+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.14 E-value=0.053 Score=26.09 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=21.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9998579999968999898199899
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSH 25 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~ 25 (1252)
+.+|-|.-||||||+++.|...+..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999899878999999999999987
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.13 E-value=0.029 Score=27.74 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
++.|.|.-|||||||++-+...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEECCCCCHHHHHHHHHHC
T ss_conf 8998648889999999999856
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.10 E-value=0.046 Score=26.50 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.++++|.+|+|||||++-+.+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990999999999709
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.07 E-value=0.047 Score=26.45 Aligned_cols=18 Identities=39% Similarity=0.654 Sum_probs=11.6
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 998579999968999898
Q 000853 2 TLLLGHPGCGKTTLLSAL 19 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L 19 (1252)
.+++|.+|+|||||++-+
T Consensus 9 illlG~~~vGKTsll~~~ 26 (221)
T d1azta2 9 LLLLGAGESGKSTIVKQM 26 (221)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999889999989
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.03 E-value=0.047 Score=26.42 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+.++|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.03 E-value=0.035 Score=27.21 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=18.7
Q ss_pred EEECCCCCCHHHHHHHHHCCCC
Q ss_conf 9857999996899989819989
Q 000853 3 LLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+.||+|+||||+++.++..+.
T Consensus 50 ~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 50 GSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp ECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
T ss_conf 9678999899999999999987
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.97 E-value=0.048 Score=26.36 Aligned_cols=99 Identities=8% Similarity=0.166 Sum_probs=55.1
Q ss_pred HHHCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEE-EEECCCEEEEECCCCCCC-H
Q ss_conf 9509968899399999-999999999999999987798999994589889999720014-664395899966998750-1
Q 000853 818 LVANPSIIFMDEPTSG-LDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLI-LMKNGGRIIYSGPLGQHS-C 894 (1252)
Q Consensus 818 l~~~p~il~lDEptsg-LD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~-~l~~gg~~~~~g~~~~~~-~ 894 (1252)
.+...+++++|+--.= -+......+..++......|+.+|+++..+..+.-..-+++. -+. .|.++.-.|.++.. .
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~-~g~~~~i~p~d~~~~~ 172 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFE-GGILVEIELDNKTRFK 172 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHH-TSEEEECCCCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCHHHHHHHH-CCEEEEECCCCHHHHH
T ss_conf 876213010112655058657788999999987631663899548751001343267888861-8568997888279999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEE
Q ss_conf 588898519996468898894432211
Q 000853 895 KVIDYFESIPGVLKIKDNYNPATWMLE 921 (1252)
Q Consensus 895 ~~~~yf~~~~~~~~~~~~~npad~~~~ 921 (1252)
-+..++... |. .+++ +.++|+++
T Consensus 173 iL~~~a~~r-gl-~l~~--~v~~yl~~ 195 (213)
T d1l8qa2 173 IIKEKLKEF-NL-ELRK--EVIDYLLE 195 (213)
T ss_dssp HHHHHHHHT-TC-CCCH--HHHHHHHH
T ss_pred HHHHHHHHC-CC-CCCH--HHHHHHHH
T ss_conf 999999982-99-9999--99999998
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.96 E-value=0.052 Score=26.17 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
..+-||+|+||||+..+++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.93 E-value=0.04 Score=26.87 Aligned_cols=23 Identities=43% Similarity=0.489 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+++|++|+|||||++.+.+...
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999878999999844888
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.88 E-value=0.054 Score=26.06 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.++++|.+|+|||||++-+...
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=91.87 E-value=0.044 Score=26.61 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=27.4
Q ss_pred HCCCCEEEEECCCCCCCH--------HHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 329817366269866385--------98999999999985726988999934898
Q 000853 160 VGPTRALFMDEISNGLDS--------STTFQIVSFLKHLVHITDATALISLLQPA 206 (1252)
Q Consensus 160 ~~~p~IllLDEPTSgLDs--------~s~~~I~~~L~~l~~~~~~t~i~~i~q~~ 206 (1252)
-.+|+++++|-.+ -+++ .....+++.|+.++...+.++++ ++|+.
T Consensus 145 ~~~~~~vvID~l~-~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~-~~q~~ 197 (277)
T d1cr2a_ 145 GLGCDVIILDHIS-IVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV-ICHLK 197 (277)
T ss_dssp TTCCSEEEEEEEE-C----------CHHHHHHHHHHHHHHHHHCCEEEE-EEECC
T ss_pred CCCCCEEEECCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE-ECCCC
T ss_conf 3676259970542-12034654430677899999999976501655203-10356
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.84 E-value=0.039 Score=26.96 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.81 E-value=0.053 Score=26.11 Aligned_cols=17 Identities=47% Similarity=0.839 Sum_probs=9.0
Q ss_pred EEECCCCCCHHHHHHHH
Q ss_conf 98579999968999898
Q 000853 3 LLLGHPGCGKTTLLSAL 19 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L 19 (1252)
+++|++|+|||||++.+
T Consensus 10 ~vvG~~~vGKTsli~~~ 26 (170)
T d2g6ba1 10 MLVGDSGVGKTCLLVRF 26 (170)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
T ss_conf 99999992999999999
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.81 E-value=0.053 Score=26.11 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=9.3
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 985799999689998981
Q 000853 3 LLLGHPGCGKTTLLSALS 20 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~ 20 (1252)
+++|.+|+|||||++.+.
T Consensus 8 vlvG~~~vGKTsli~~~~ 25 (168)
T d1u8za_ 8 IMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 999989958899999997
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.81 E-value=0.053 Score=26.11 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=12.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99857999996899989819
Q 000853 2 TLLLGHPGCGKTTLLSALSG 21 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G 21 (1252)
.+++|.+|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999498999999985
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.79 E-value=0.041 Score=26.80 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9994589988678998883
Q 000853 693 TALMGVSGAGKTTLMDVLS 711 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~ 711 (1252)
++++|.-++|||||+..|.
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHH
T ss_conf 9999527989999999999
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.77 E-value=0.048 Score=26.36 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=9.2
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9994589988678998883
Q 000853 693 TALMGVSGAGKTTLMDVLS 711 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~ 711 (1252)
+.|+|.+|+|||||++-+.
T Consensus 12 i~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999989999999996
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.76 E-value=0.052 Score=26.15 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+|+|.+|+|||||++-+.+.
T Consensus 9 v~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997996989999999739
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.73 E-value=0.057 Score=25.93 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+.++|.+|+|||||++-+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.69 E-value=0.044 Score=26.62 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=10.1
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9857999996899989819
Q 000853 3 LLLGHPGCGKTTLLSALSG 21 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~G 21 (1252)
+++|.+|+|||||++-+.+
T Consensus 8 ~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 8 VVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9999899598999999970
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.59 E-value=0.035 Score=27.22 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+.++|.+|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.57 E-value=0.062 Score=25.70 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.57 E-value=0.054 Score=26.05 Aligned_cols=21 Identities=48% Similarity=0.619 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
-++|+|+.|+|||||...|..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999994889809999999999
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.57 E-value=0.057 Score=25.90 Aligned_cols=18 Identities=44% Similarity=0.693 Sum_probs=11.1
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 998579999968999898
Q 000853 2 TLLLGHPGCGKTTLLSAL 19 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L 19 (1252)
.+++|.+|+|||||++-+
T Consensus 5 ivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999989999988
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.53 E-value=0.055 Score=25.99 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHH---HCCCCC
Q ss_conf 998579999968999898---199899
Q 000853 2 TLLLGHPGCGKTTLLSAL---SGKLSH 25 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L---~G~~~~ 25 (1252)
.+|+||.|||||||...| +|..+.
T Consensus 9 i~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf 999958989989999999996485340
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.50 E-value=0.045 Score=26.57 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=16.7
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 99985799999689998981
Q 000853 1 MTLLLGHPGCGKTTLLSALS 20 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~ 20 (1252)
++.|.||+||||||+..-++
T Consensus 38 ~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998589898899999999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.50 E-value=0.047 Score=26.44 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998579999968999898199899
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSH 25 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~ 25 (1252)
.+|-|+.||||||+.+.|.-.+..
T Consensus 5 IviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999899888799999999999996
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.49 E-value=0.041 Score=26.78 Aligned_cols=62 Identities=19% Similarity=0.336 Sum_probs=33.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 222323489888779889999999999950996889939999999999999999999998779899999458
Q 000853 791 IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQ 862 (1252)
Q Consensus 791 ~~~~~ig~~~~~~lSgG~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~ 862 (1252)
..-.++..||.-.+++.-..=+ -+.+..++++| +..|+-+.|...+....+ .+..+++.+..
T Consensus 96 ~~inliDtPGh~dF~~ev~~al-----~~~D~allVVd-a~eGv~~qT~~~~~~a~~----~~~p~i~viNK 157 (341)
T d1n0ua2 96 FLINLIDSPGHVDFSSEVTAAL-----RVTDGALVVVD-TIEGVCVQTETVLRQALG----ERIKPVVVINK 157 (341)
T ss_dssp EEEEEECCCCCCSSCHHHHHHH-----HTCSEEEEEEE-TTTBSCHHHHHHHHHHHH----TTCEEEEEEEC
T ss_pred EEEEEECCCCCHHHHHHHHHHH-----HHCCCEEEEEE-CCCCCCHHHHHHHHHHHH----CCCCEEEEEEC
T ss_conf 3799973787388999999887-----52372499986-566820469999999987----69986999877
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.49 E-value=0.064 Score=25.62 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
.++++|++|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.45 E-value=0.069 Score=25.41 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
.+.++|.+|+|||||++-+..
T Consensus 8 KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 799998999988999998950
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.43 E-value=0.046 Score=26.51 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998579999968999898199899
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSH 25 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~ 25 (1252)
.+|-|+.||||||+.+.|...+..
T Consensus 6 I~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 6 IVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999899888999999999999987
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.40 E-value=0.066 Score=25.53 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
.+.++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.30 E-value=0.065 Score=25.54 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
..+.||+|+||||+..+++.++.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.30 E-value=0.068 Score=25.45 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+.++|.+|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.22 E-value=0.075 Score=25.19 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99994589988678998883
Q 000853 692 LTALMGVSGAGKTTLMDVLS 711 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~ 711 (1252)
.+.++|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999899999899999884
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.20 E-value=0.06 Score=25.76 Aligned_cols=22 Identities=41% Similarity=0.472 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
..+.||+|+||||+..+++-.+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999998899999999762
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.17 E-value=0.072 Score=25.30 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+.++|.+|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.15 E-value=0.051 Score=26.22 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=19.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
+|.|.|++|+||||+..-++-...
T Consensus 36 l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 36 VTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999991799998999999999998
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.13 E-value=0.073 Score=25.26 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
.+|+|.+|+|||||++.+....
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~~ 33 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYANDA 33 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999989999999996499
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.04 E-value=0.062 Score=25.68 Aligned_cols=18 Identities=33% Similarity=0.591 Sum_probs=9.2
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 985799999689998981
Q 000853 3 LLLGHPGCGKTTLLSALS 20 (1252)
Q Consensus 3 ~IlGpsGSGKSTLL~~L~ 20 (1252)
+++|.+|+|||||++-+.
T Consensus 7 vllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 7 VVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 999999969999999997
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.95 E-value=0.077 Score=25.12 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+.++|.+|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.91 E-value=0.074 Score=25.21 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+++|.+|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999998998999999999709
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.91 E-value=0.068 Score=25.42 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=9.4
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9994589988678998883
Q 000853 693 TALMGVSGAGKTTLMDVLS 711 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl~~l~ 711 (1252)
++++|.-++|||||...|.
T Consensus 9 i~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999478998999999999
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.88 E-value=0.066 Score=25.53 Aligned_cols=21 Identities=33% Similarity=0.730 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+++|.+|+|||||++-+...
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999995989999999729
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.85 E-value=0.068 Score=25.43 Aligned_cols=21 Identities=33% Similarity=0.320 Sum_probs=18.1
Q ss_pred CEEEECCCCCCHHHHHHHHHC
Q ss_conf 999857999996899989819
Q 000853 1 MTLLLGHPGCGKTTLLSALSG 21 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G 21 (1252)
++.|.|++||||||+..-++.
T Consensus 39 ~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 39 ITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp EEEEECCTTCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999988998878899999999
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.85 E-value=0.055 Score=25.98 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=21.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9998579999968999898199899
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSH 25 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~ 25 (1252)
+.++=|+-||||||+.+.|+-.+..
T Consensus 5 ~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 5 LILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999899888699999999999971
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=90.85 E-value=0.056 Score=25.96 Aligned_cols=16 Identities=38% Similarity=0.700 Sum_probs=10.9
Q ss_pred EEEECCCCCCHHHHHH
Q ss_conf 9985799999689998
Q 000853 2 TLLLGHPGCGKTTLLS 17 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~ 17 (1252)
.+|.|++||||||.+-
T Consensus 17 ~lI~g~aGTGKTt~l~ 32 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVIT 32 (306)
T ss_dssp EEECCCTTSCHHHHHH
T ss_pred EEEEEECCCCHHHHHH
T ss_conf 8999628843899999
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.84 E-value=0.094 Score=24.56 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
++||.|+-||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999979999889999999998
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=90.82 E-value=0.056 Score=25.97 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=8.1
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 999458998867899
Q 000853 693 TALMGVSGAGKTTLM 707 (1252)
Q Consensus 693 ~~i~G~sGaGKtTLl 707 (1252)
+.|.|+.||||||.+
T Consensus 27 ~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 27 LLIMAGAGSGKTRVL 41 (318)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEEECCCCCHHHHH
T ss_conf 899952986689999
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=90.80 E-value=0.046 Score=26.51 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=21.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 487399994589988678998883497
Q 000853 688 RPGILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 688 ~~G~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.|.-.+.+.||+|+|||.|.+.|++..
T Consensus 121 ~~~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 121 YASGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 688638887799850889999999986
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.65 E-value=0.11 Score=24.07 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=25.3
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6057874873999945899886789988834
Q 000853 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 682 ~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g 712 (1252)
|.-..+-.|+..+|.|++|.|||+|+..++.
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 1025636788777667999898999999999
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.61 E-value=0.069 Score=25.38 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=17.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
+|.|.||+|||||||..-++....
T Consensus 56 itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 56 IVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 899805777478999999999987
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.58 E-value=0.081 Score=24.97 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.++++|.+|+|||||++-+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996999999999719
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.50 E-value=0.074 Score=25.22 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=19.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985799999689998981998
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
+.+|.|+.||||||+.+.|...+
T Consensus 3 iIgiTG~igSGKsTva~~l~e~~ 25 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 99997999988999999999868
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.47 E-value=0.086 Score=24.82 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=24.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCC
Q ss_conf 9985799999689998981998999832689999891
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGY 38 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~ 38 (1252)
.+++||+|+|||.|.+.|+-.+. .--+.+|..
T Consensus 55 ~lf~Gp~GvGKT~lak~la~~l~-----~~~i~~d~s 86 (315)
T d1r6bx3 55 FLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMS 86 (315)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGG
T ss_pred EEEECCCCCHHHHHHHHHHHHCC-----CCEEEECCC
T ss_conf 99977875006999999986336-----770674154
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.47 E-value=0.1 Score=24.31 Aligned_cols=43 Identities=21% Similarity=0.208 Sum_probs=29.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC-CCCCEEEEEEEECCEE
Q ss_conf 78748739999458998867899888349-7897079999999950
Q 000853 685 GTFRPGILTALMGVSGAGKTTLMDVLSGR-KTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 685 ~~i~~G~~~~i~G~sGaGKtTLl~~l~g~-~~~~~~~G~i~~~g~~ 729 (1252)
+-++.|.++-+.|++|+||||+.-.++.. ...+. --|++|...
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~--~~vyIDtE~ 98 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG--VAAFIDAEH 98 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC--EEEEEECCC
T ss_conf 98666336999648874889999999998754898--899998976
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.46 E-value=0.068 Score=25.44 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399994589988678998883497
Q 000853 691 ILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 691 ~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
=.+||+|-+.+|||||+++|++..
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 348888999998899999997799
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.29 E-value=0.081 Score=24.95 Aligned_cols=23 Identities=48% Similarity=0.647 Sum_probs=20.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985799999689998981998
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
++.|-|.-|||||||++-+....
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89986488899999999998567
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.25 E-value=0.07 Score=25.35 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+|=|+-||||||+++.|.-.+.
T Consensus 5 IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 5 LSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989988859999999999873
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.12 E-value=0.13 Score=23.73 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998579999968999898199899
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSH 25 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~ 25 (1252)
.+|+||..+|||||++.|+|....
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~~~~ 34 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGIWTS 34 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSCCC-
T ss_pred EEEEECCCCCHHHHHHHHHHHHCH
T ss_conf 999972488699999999704121
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=89.98 E-value=0.14 Score=23.57 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=23.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4873999945899886789988834978
Q 000853 688 RPGILTALMGVSGAGKTTLMDVLSGRKT 715 (1252)
Q Consensus 688 ~~G~~~~i~G~sGaGKtTLl~~l~g~~~ 715 (1252)
+.+-.++++|.+.+|||||+|.|.|+..
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 7752789986675443555425426615
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.89 E-value=0.11 Score=24.18 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+.++|.+|+|||||++-+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.86 E-value=0.12 Score=23.81 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
-++++|..++|||||++.|..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999994789849999999999
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.83 E-value=0.11 Score=24.11 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999458998867899888349
Q 000853 692 LTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
.+.++|.+|+|||||++-+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=89.75 E-value=0.14 Score=23.40 Aligned_cols=29 Identities=31% Similarity=0.469 Sum_probs=25.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 78748739999458998867899888349
Q 000853 685 GTFRPGILTALMGVSGAGKTTLMDVLSGR 713 (1252)
Q Consensus 685 ~~i~~G~~~~i~G~sGaGKtTLl~~l~g~ 713 (1252)
|-++.|.++-+-|++|+|||||...++..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98667547898058765227999999999
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=89.72 E-value=0.12 Score=23.86 Aligned_cols=43 Identities=9% Similarity=0.244 Sum_probs=24.8
Q ss_pred HCCCEEEEECCCC-------CCCHHH-HHHHHHHHHHH---HH-CCCEEEEEECC
Q ss_conf 0996889939999-------999999-99999999999---87-79899999458
Q 000853 820 ANPSIIFMDEPTS-------GLDARA-AAIVMRAVKNV---VE-TGRTVVCTIHQ 862 (1252)
Q Consensus 820 ~~p~il~lDEpts-------gLD~~~-~~~i~~~l~~~---~~-~g~tvi~~~h~ 862 (1252)
.+|.|+|+||--+ +.++.. .+.+-+.|.++ .. .+.-||.++..
T Consensus 181 ~~~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~ 235 (321)
T d1w44a_ 181 LQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (321)
T ss_dssp HHCSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHCCEEEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf 6265897410122212345678987413345156652035566788499983797
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.65 E-value=0.11 Score=24.09 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999945899886789988834978
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRKT 715 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~~ 715 (1252)
-..++|++|.|||++..-|+.+..
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=89.10 E-value=0.16 Score=23.17 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998579999968999898199899
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSH 25 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~ 25 (1252)
.+|=|+-|+||||+++.|+..+..
T Consensus 9 I~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 9 IYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 999888667899999999998656
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=88.89 E-value=0.1 Score=24.39 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=33.4
Q ss_pred CCCCEEEEECCCCCCCH----HHHHHHHHHHHHHHHHCCCEEEEEECCCCH--------HHHHHCCCEEEEC
Q ss_conf 29817366269866385----989999999999857269889999348982--------6883003189972
Q 000853 161 GPTRALFMDEISNGLDS----STTFQIVSFLKHLVHITDATALISLLQPAP--------ETFDLFDDVMLMA 220 (1252)
Q Consensus 161 ~~p~IllLDEPTSgLDs----~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~--------~~~~lfD~I~vL~ 220 (1252)
.+|++++.|.-+.-.+. .........+....+..+.+++++.|+... .....+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 312220020788998760572678999999999998639716884210255422246762335362999988
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=88.86 E-value=0.17 Score=22.99 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=21.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 487399994589988678998883497
Q 000853 688 RPGILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 688 ~~G~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
+|...+.++||+|+|||.+.+.|+...
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 876699997888624899999999983
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=88.75 E-value=0.14 Score=23.52 Aligned_cols=23 Identities=35% Similarity=0.281 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+|=|+-||||||+++.|+..+.
T Consensus 7 I~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 7 VYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEECSCTTSSHHHHHHHHTC---
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989867789999999999817
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.54 E-value=0.15 Score=23.32 Aligned_cols=50 Identities=8% Similarity=0.145 Sum_probs=30.1
Q ss_pred HHCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH
Q ss_conf 83298173662698663-8598999999999985726988999934898268
Q 000853 159 IVGPTRALFMDEISNGL-DSSTTFQIVSFLKHLVHITDATALISLLQPAPET 209 (1252)
Q Consensus 159 L~~~p~IllLDEPTSgL-Ds~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~ 209 (1252)
.+...+++++||.-.=. +...+..+.+.+..... .++.++++...+..+.
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~-~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQKL 144 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGGGC
T ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCCCHHC
T ss_conf 87621301011265505865778899999998763-1663899548751001
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=88.50 E-value=0.08 Score=25.00 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999945899886789988834978
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRKT 715 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~~ 715 (1252)
-+.+.|++|+|||||.+.+++...
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 089988998529999999987379
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.48 E-value=0.17 Score=22.97 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999945899886789988834978
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRKT 715 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~~ 715 (1252)
.++|=|.-||||||+++.|+....
T Consensus 4 ~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989988859999999999873
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=88.39 E-value=0.13 Score=23.61 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=16.7
Q ss_pred CEEEEEECCCCCCHHHHHHH
Q ss_conf 73999945899886789988
Q 000853 690 GILTALMGVSGAGKTTLMDV 709 (1252)
Q Consensus 690 G~~~~i~G~sGaGKtTLl~~ 709 (1252)
+..+.|.|+.|+||||++..
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCEEEEECCCCCCCEEHHHH
T ss_conf 88599976898875216999
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.12 E-value=0.14 Score=23.45 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998579999968999898199
Q 000853 2 TLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~ 22 (1252)
.+++|..|+|||||++-+...
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999999679
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=87.95 E-value=0.19 Score=22.73 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 873999945899886789988834
Q 000853 689 PGILTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 689 ~G~~~~i~G~sGaGKtTLl~~l~g 712 (1252)
|.--+|++|.-++|||||++.|.+
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 971899995889809999999999
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=87.93 E-value=0.17 Score=22.91 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=21.3
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7487399994589988678998883497
Q 000853 687 FRPGILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 687 i~~G~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
.+|+. +.++||+|+|||-|.+.|+...
T Consensus 66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 66 LSKSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHC
T ss_conf 78753-2441899863789999998644
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.63 E-value=0.18 Score=22.85 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998579999968999898199899
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSH 25 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~ 25 (1252)
.+++|..|+|||||++-+.....|
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~ 28 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEA 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 999999998889999988408979
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=87.08 E-value=0.21 Score=22.43 Aligned_cols=42 Identities=26% Similarity=0.434 Sum_probs=27.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECC
Q ss_conf 99857999996899989819989998326899998912787655423887665
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQ 54 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~~~~~yv~Q 54 (1252)
.+.+||+|+|||-|.+.|+-.+. ..-+.++-... ...+|++.
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~-----~~~ir~D~s~~------~e~gyvg~ 112 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLD-----IPIAISDATSL------TEAGYVGE 112 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEGGGC------C-------
T ss_pred EEEECCCCCCHHHHHHHHHHHCC-----CCEEEHHHHHC------CCCHHHHH
T ss_conf 24418998637899999986443-----53311122201------44316676
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.05 E-value=0.23 Score=22.16 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
.+.++|..|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999888999998840
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.02 E-value=0.21 Score=22.45 Aligned_cols=70 Identities=9% Similarity=0.100 Sum_probs=37.6
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 96889939999999999999999999998779899999458988999972001466439589996699875015888985
Q 000853 822 PSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFE 901 (1252)
Q Consensus 822 p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~~l~~gg~~~~~g~~~~~~~~~~~yf~ 901 (1252)
.+++++||.-. |+..+...+.+.+.+-. .+..+|+++++++. +... +. +-...+.+.++.. +++..+..
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~-i~~~-----i~-SRc~~i~~~~~~~--~~i~~~l~ 184 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPP-EHVKFLLATTDPQK-LPVT-----IL-SRCLQFHLKALDV--EQIRHQLE 184 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCC-TTEEEEEEESCGGG-SCHH-----HH-TTSEEEECCCCCH--HHHHHHHH
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHCCC-CCEEEEEECCCCCC-CCHH-----HH-HHHCCCCCCCCCH--HHHHHHHH
T ss_conf 87999978110-89999999999985689-88699997388563-6765-----76-1210222246767--87666887
Q ss_pred H
Q ss_conf 1
Q 000853 902 S 902 (1252)
Q Consensus 902 ~ 902 (1252)
.
T Consensus 185 ~ 185 (239)
T d1njfa_ 185 H 185 (239)
T ss_dssp H
T ss_pred H
T ss_conf 8
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.98 E-value=0.21 Score=22.34 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999945899886789988834
Q 000853 692 LTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g 712 (1252)
.+.++|.+|+|||||++-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999967
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.76 E-value=0.18 Score=22.82 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=13.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998579999968999898199
Q 000853 1 MTLLLGHPGCGKTTLLSALSGK 22 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~ 22 (1252)
+|.+.||+|+||||+...++..
T Consensus 62 i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 62 VIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 6999648874889999999998
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=86.63 E-value=0.2 Score=22.60 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9985799999689998981998
Q 000853 2 TLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
..|.|++|+|||||+..++...
T Consensus 46 ~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 46 GLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp EEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 5686799988789999999977
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.50 E-value=0.24 Score=22.05 Aligned_cols=71 Identities=11% Similarity=0.288 Sum_probs=35.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHHHHH
Q ss_conf 99688993999999999999999999999877989999945898899997200146643958999669987501588898
Q 000853 821 NPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900 (1252)
Q Consensus 821 ~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~~l~~gg~~~~~g~~~~~~~~~~~yf 900 (1252)
+.+++++||.-. |...++..+.+++.+-. .+..+|+++++++ .+... +.+. -..+.+-|+.. +.+..++
T Consensus 108 ~~kviIide~d~-l~~~a~n~Llk~lEep~-~~~~fIl~t~~~~-~ll~t-----I~SR-c~~i~~~~~~~--~~~~~~L 176 (207)
T d1a5ta2 108 GAKVVWVTDAAL-LTDAAANALLKTLEEPP-AETWFFLATREPE-RLLAT-----LRSR-CRLHYLAPPPE--QYAVTWL 176 (207)
T ss_dssp SCEEEEESCGGG-BCHHHHHHHHHHHTSCC-TTEEEEEEESCGG-GSCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CCCEEEECHHHH-HHHHHHHHHHHHHHHHC-CCCEEEEEECCHH-HHHHH-----HCCE-EEEEECCCCCH--HHHHHHH
T ss_conf 640477313442-00001499999998501-1110455306865-51032-----0021-57882689999--9999999
Q ss_pred HH
Q ss_conf 51
Q 000853 901 ES 902 (1252)
Q Consensus 901 ~~ 902 (1252)
+.
T Consensus 177 ~~ 178 (207)
T d1a5ta2 177 SR 178 (207)
T ss_dssp HH
T ss_pred HH
T ss_conf 97
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=86.40 E-value=0.16 Score=23.16 Aligned_cols=16 Identities=38% Similarity=0.704 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHH
Q ss_conf 9985799999689998
Q 000853 2 TLLLGHPGCGKTTLLS 17 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~ 17 (1252)
+.|.|++||||||.|-
T Consensus 27 ~lV~g~aGSGKTt~l~ 42 (318)
T d1pjra1 27 LLIMAGAGSGKTRVLT 42 (318)
T ss_dssp EEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCHHHHHH
T ss_conf 8999529866899999
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.32 E-value=0.22 Score=22.25 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999945899886789988834978
Q 000853 692 LTALMGVSGAGKTTLMDVLSGRKT 715 (1252)
Q Consensus 692 ~~~i~G~sGaGKtTLl~~l~g~~~ 715 (1252)
-..++|++|.|||++..-|+.+..
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 739983587544799999999998
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=86.06 E-value=0.16 Score=23.14 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998579999968999898199899
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSH 25 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~~ 25 (1252)
.+|=|+-||||||+++.|+-.+..
T Consensus 8 I~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 8 IYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999888778899999999998734
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=86.03 E-value=0.21 Score=22.38 Aligned_cols=17 Identities=53% Similarity=0.892 Sum_probs=8.9
Q ss_pred CEEEEEECCCCCCHHHH
Q ss_conf 73999945899886789
Q 000853 690 GILTALMGVSGAGKTTL 706 (1252)
Q Consensus 690 G~~~~i~G~sGaGKtTL 706 (1252)
|+...+.|.||+|||||
T Consensus 14 ~~~alfFGLSGTGKTTL 30 (313)
T d2olra1 14 GDVAVFFGLSGTGKTTL 30 (313)
T ss_dssp SCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCCCCC
T ss_conf 98899970477985602
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=85.98 E-value=0.21 Score=22.43 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHC--CCEEEEECCCCCCCHHH---HHHHHHHHHHHHHCC-CEEEEEECCCCHHHHHHHCCEEEEECCC
Q ss_conf 99999999999509--96889939999999999---999999999998779-8999994589889999720014664395
Q 000853 808 QRKRLTIAVELVAN--PSIIFMDEPTSGLDARA---AAIVMRAVKNVVETG-RTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 808 ~rkrv~ia~~l~~~--p~il~lDEptsgLD~~~---~~~i~~~l~~~~~~g-~tvi~~~h~~~~~~~~~~d~i~~l~~gg 881 (1252)
|.+...|..++... +-|||+||..+=++..+ ....-+.|+-.-..| -.+|.++. .+.|..+.+=--+.+-=
T Consensus 100 e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT---~~ey~~~e~d~al~rrF 176 (387)
T d1qvra2 100 EERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATT---LDEYREIEKDPALERRF 176 (387)
T ss_dssp HHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEEC---HHHHHHHTTCTTTCSCC
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECC---HHHHHHHCCCHHHHHHC
T ss_conf 999999999850589966987240888842777877413899999997378851666368---99998763367999824
Q ss_pred EEEEECCCC
Q ss_conf 899966998
Q 000853 882 RIIYSGPLG 890 (1252)
Q Consensus 882 ~~~~~g~~~ 890 (1252)
..+...+++
T Consensus 177 ~~v~v~ep~ 185 (387)
T d1qvra2 177 QPVYVDEPT 185 (387)
T ss_dssp CCEEECCCC
T ss_pred CCCCCCCCC
T ss_conf 611279986
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=85.87 E-value=0.19 Score=22.71 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=17.4
Q ss_pred CCCCCCCCEEEEEECCEEEEEECCCCCCHHHHH
Q ss_conf 333222360578748739999458998867899
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLM 707 (1252)
Q Consensus 675 ~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl 707 (1252)
.++.+++.. +|- +.|.|+.|+||||.+
T Consensus 5 eQ~~av~~~-----~~~-~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 5 GQQQAVEFV-----TGP-CLVLAGAGSGKTRVI 31 (306)
T ss_dssp HHHHHHHCC-----SSE-EEECCCTTSCHHHHH
T ss_pred HHHHHHHCC-----CCC-EEEEEECCCCHHHHH
T ss_conf 999998199-----999-899962884389999
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.61 E-value=0.2 Score=22.60 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99857999996899989819989
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLS 24 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~G~~~ 24 (1252)
.+++|++|.|||+++..|+-++.
T Consensus 42 ~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 42 PLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
T ss_conf 67988898867799999999998
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=84.87 E-value=0.23 Score=22.14 Aligned_cols=17 Identities=53% Similarity=0.892 Sum_probs=10.0
Q ss_pred CEEEEEECCCCCCHHHH
Q ss_conf 73999945899886789
Q 000853 690 GILTALMGVSGAGKTTL 706 (1252)
Q Consensus 690 G~~~~i~G~sGaGKtTL 706 (1252)
|+...+.|.||+|||||
T Consensus 14 ~~valffGLSGTGKTTL 30 (318)
T d1j3ba1 14 GDVAVFFGLSGTGKTTL 30 (318)
T ss_dssp CCEEEEEECTTSCHHHH
T ss_pred CCEEEEECCCCCCCCCC
T ss_conf 98899973687981422
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.81 E-value=0.21 Score=22.40 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHH---CCCCC
Q ss_conf 9985799999689998981---99899
Q 000853 2 TLLLGHPGCGKTTLLSALS---GKLSH 25 (1252)
Q Consensus 2 t~IlGpsGSGKSTLL~~L~---G~~~~ 25 (1252)
.+|+||.++|||||+..|. |..+.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i~~ 46 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGIISA 46 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCBC
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf 999968888699999999997798663
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=84.61 E-value=0.24 Score=22.06 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=13.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99985799999689998981998
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKL 23 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~ 23 (1252)
+|-|-||+|||||||...++...
T Consensus 59 itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 59 ITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 78980587652279999999999
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.51 E-value=0.23 Score=22.11 Aligned_cols=31 Identities=19% Similarity=0.096 Sum_probs=24.7
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6057874873999945899886789988834
Q 000853 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSG 712 (1252)
Q Consensus 682 ~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g 712 (1252)
|.-..+-.|+..+|.|++|.|||+|+.-+..
T Consensus 60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp HHHSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred ECCCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 4346766787787656888885899999997
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=83.69 E-value=0.31 Score=21.38 Aligned_cols=17 Identities=59% Similarity=0.929 Sum_probs=7.7
Q ss_pred CEEEEEECCCCCCHHHH
Q ss_conf 73999945899886789
Q 000853 690 GILTALMGVSGAGKTTL 706 (1252)
Q Consensus 690 G~~~~i~G~sGaGKtTL 706 (1252)
|....+.|.||+|||||
T Consensus 14 gd~alfFGLSGTGKTTL 30 (323)
T d1ii2a1 14 GDVTVFFGLSGTGKTTL 30 (323)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CCEEEEECCCCCCCCCC
T ss_conf 98799973677881205
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=82.91 E-value=0.55 Score=19.80 Aligned_cols=13 Identities=8% Similarity=0.220 Sum_probs=8.5
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 8999898199899
Q 000853 13 TTLLSALSGKLSH 25 (1252)
Q Consensus 13 STLL~~L~G~~~~ 25 (1252)
.++|+.|--|+..
T Consensus 14 ~~vl~~L~~Ry~~ 26 (684)
T d1lkxa_ 14 NAFIENLTMRHKS 26 (684)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999999858
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=81.59 E-value=0.2 Score=22.53 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=24.3
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 605787487399994589988678998883
Q 000853 682 DITGTFRPGILTALMGVSGAGKTTLMDVLS 711 (1252)
Q Consensus 682 ~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~ 711 (1252)
|.-..+-.|+..+|.|++|+|||+|+..+.
T Consensus 59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 59 DAMIPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp TTTSCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred ECCCCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 501454677667600677888579999977
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=81.06 E-value=0.64 Score=19.38 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=7.8
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 8999898199899
Q 000853 13 TTLLSALSGKLSH 25 (1252)
Q Consensus 13 STLL~~L~G~~~~ 25 (1252)
+++|+.|--|+..
T Consensus 19 ~~vl~~L~~Ry~~ 31 (710)
T d1br2a2 19 ASVLHNLRERYFS 31 (710)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999999868
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=80.61 E-value=0.56 Score=19.75 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=22.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 487399994589988678998883497
Q 000853 688 RPGILTALMGVSGAGKTTLMDVLSGRK 714 (1252)
Q Consensus 688 ~~G~~~~i~G~sGaGKtTLl~~l~g~~ 714 (1252)
+.-.++-+.||.++|||+++++|....
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 761799998589887789999999983
|